BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008342
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 249 bits (635), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 198/551 (35%), Positives = 275/551 (49%), Gaps = 51/551 (9%)
Query: 23 LW-FINRAATLHPTRKSVV----YGSKHYT-WHQTYRRCRRFASALSKLSIGLGTTVSVI 76
LW F+ RAA L RK VV G H T + + Y+R RR L L +G+G V+ +
Sbjct: 20 LWDFLERAAALF-GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATL 78
Query: 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136
N EA F P GAVL++ N RL+ +A+IL+HA V++ D L E A++
Sbjct: 79 GFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE-AIR 137
Query: 137 MMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQ 196
G+LKT V+ DE L Y A G E DP + PE
Sbjct: 138 -------GELKTVQHFVVMDEKAPEGYLAYEEALG--------EEADP---VRVPER--A 177
Query: 197 SIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYT 254
+ + YT+GTT PKGVV SHR L SL +L+ G ++E V L +PMFH N W
Sbjct: 178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237
Query: 255 WSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
++ A L G L ++ ++ GVT P V A+A+ E T L +
Sbjct: 238 YA-ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYL-ESTGHRLKTL 295
Query: 313 VNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAW-KPEWDSLPFETQARLN 371
+ G+ P SL+ + G + YGLTE T P V + K +SL E + L
Sbjct: 296 RRLVVGGSAAPRSLIARFERMGVEVRQGYGLTE-TSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NG 430
A+ G+ I L L V D +PVP DGK +GE+ ++G + GY N +A A +G
Sbjct: 355 AKTGL-PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412
Query: 431 WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDER 490
+F +GD+AV + Y+EIKDRLKD+I SGGE ISSV++E L HP V EAAVVA P +
Sbjct: 413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPK 472
Query: 491 WGESPCAFVT---LKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 546
W E P A V KP +EL++ +A + +P + VFA +P+++ GK
Sbjct: 473 WQERPLAVVVPRGEKPTPEELNE--------HLLKAGFAKWQLPDAYVFAEEIPRTSAGK 524
Query: 547 IQKHLLRAKAK 557
K LR + K
Sbjct: 525 FLKRALREQYK 535
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 166/538 (30%), Positives = 251/538 (46%), Gaps = 53/538 (9%)
Query: 24 WFINRAATLHPTRKSVVYGSK--HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP 81
W + + AT+ P ++ V S T+ Q R A L+ L I G V+++ PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN 141
+GA GAV IN RL A V+FILS + S VVI + + + + + A
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 135
Query: 142 SEGKLKTPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
++ P + IG +S + R A E +E G + ++
Sbjct: 136 AD----PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLF 174
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+ YTSGTT PKGVV +H + + + A + L LPMFH + T +A
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSA 233
Query: 260 LCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
+ G T I + Q A V++ I V A P +LN + PE L + T
Sbjct: 234 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITG 292
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
GAP P +L+ + K + Y LTE G ++ L E R G T
Sbjct: 293 GAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRAT 343
Query: 379 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA 438
+ D + R + V + GE+V++ ++K Y P+A +AF NGWF +GD+
Sbjct: 344 MFTD----VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIG 398
Query: 439 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498
+ Y+ IKDRLKD+IISGGEN+ E+E V+ P V E AV+ PDE+WGE A
Sbjct: 399 EIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAI 458
Query: 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
V + +E+ + ++ E +C ++ Y +PK V+FA A+P++ TGKI K +LR +
Sbjct: 459 VV--ADQNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 139/538 (25%), Positives = 223/538 (41%), Gaps = 51/538 (9%)
Query: 27 NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86
R A L P R + + T R R AS L + + G V++++ N M E
Sbjct: 13 RRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIEL 72
Query: 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKL 146
+ GA+L +N RLNA +AF+L + +VV+ ++ + L S G +
Sbjct: 73 IGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-----SLGGV 127
Query: 147 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGT 206
K YA+ G+ + F + P + +T+
Sbjct: 128 KK----------------AYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAV 171
Query: 207 TASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSIC 266
P+G ++S + + W + E V L LP+FH G +L G S+
Sbjct: 172 GGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI 231
Query: 267 LRQVTAKAVYTAIATHGVTHFCA-APVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPS 325
+ I H VT AP++ N + A+P + L V ++T P
Sbjct: 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQ-LASLRAVTGLDT----PETI 286
Query: 326 LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
F + T+G +E +G ++ + R + R + +
Sbjct: 287 ERFEATCPNATFWATFGQSETSGLSTFAPY-------------RDRPKSAGRPLFWRTVA 333
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNY 445
V+DA ++P+P +GEIV+RG V KGY N A + AF NGW H+GD+ D Y
Sbjct: 334 VVDAE-DRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGY 390
Query: 446 IEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP 503
+ R K++I +GGEN+ EVE L HP + +A V+ PD +W E+ A KP
Sbjct: 391 LFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450
Query: 504 EADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKEMG 560
+ A+ +++F + + Y PK VVF ALPK A G I + ++ + G
Sbjct: 451 -----GESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 151/544 (27%), Positives = 246/544 (45%), Gaps = 67/544 (12%)
Query: 33 HPTRKSVVYGSKH--YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGA 90
H ++ ++ G+ YT+ RR AS L+K+ I G + + P+ P A GA
Sbjct: 35 HSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGA 94
Query: 91 PMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEANSEGKLKT 148
GA++ + N + A + HA S A +++ Q + E +K S+ K
Sbjct: 95 SHRGAIITAAN---PFSTPAELAKHAKASRAKLLITQACYY---EKVKDFARESDVK--- 145
Query: 149 PHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTA 208
V+ +S L ++ A E E P+ P + +AL Y+SGTT
Sbjct: 146 ----VMCVDSAPDGCLHFSELTQADENEA------PQVDISPDD----VVALPYSSGTTG 191
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGWSYTWSLAALCG 262
PKGV+++H+G L++ + G N F L LPMFH Y + LCG
Sbjct: 192 LPKGVMLTHKG--LITSVAQQVDGDNPNLYFHSEDVILCVLPMFH----IYALNSIMLCG 245
Query: 263 TSI-----CLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
+ + + ++ I + V+ P V+ +IA SP+ L+++ + +
Sbjct: 246 LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK-SPDLDKHDLSSLRMIKS 304
Query: 318 AGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQG 375
GAP L + K R+ YG+TE GP V A + PF+ +
Sbjct: 305 GGAPLGKELEDTVRAKFPQARLGQGYGMTE-AGP--VLAMCLAFAKEPFDIKP-----GA 356
Query: 376 VRTICLDG-LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFH 433
T+ + + ++D T +P + GEI +RG +MKGYL +P+A GW H
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLH 414
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GD+ D+ + I DRLK++I G ++ E+E +L HP + +AAVV DE GE
Sbjct: 415 TGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGE 474
Query: 494 SPCAFVTLKPEADELDKGKLAED-VSKFCRAKMPSYWVPKSVVF-AALPKSATGKIQKHL 551
P AFV + +K + ED + ++ ++ Y K V F A+PK+ +GKI +
Sbjct: 475 VPVAFVV------KSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKN 528
Query: 552 LRAK 555
L+ K
Sbjct: 529 LKEK 532
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/534 (27%), Positives = 242/534 (45%), Gaps = 67/534 (12%)
Query: 46 YTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLN 105
YT+ + R+ A+ KL + V ++ PN P + A GA + N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 106 ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGD-------ES 158
+A +++ ++I + + + +K ++ N +G + ++ I D E
Sbjct: 149 PAEIAKQAKASNTKLIITEARYV----DKIKPLQ-NDDGVV----IVCIDDNESVPIPEG 199
Query: 159 CDSKQLEYA-LARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSH 217
C L + L + E + +++ + P+D +AL Y+SGTT PKGV+++H
Sbjct: 200 C----LRFTELTQSTTEASEVIDSVEIS-----PDD---VVALPYSSGTTGLPKGVMLTH 247
Query: 218 RGAYLMSLNGALIWGMNEGAVF------LWTLPMFHGNGWSYTWSLAALCGTSI-----C 266
+G L++ + G N F L LPMFH Y + LCG +
Sbjct: 248 KG--LVTSVAQQVDGENPNLYFHSDDVILCVLPMFH----IYALNSIMLCGLRVGAAILI 301
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
+ + + I VT P ++ AIA +S E L+++ V + AP L
Sbjct: 302 MPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSS-ETEKYDLSSIRVVKSGAAPLGKEL 360
Query: 327 LFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
A++ K ++ YG+TE GP + + P ++ A + +D
Sbjct: 361 EDAVNAKFPNAKLGQGYGMTE-AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDP- 418
Query: 385 DVIDART-NQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHP 442
D D+ + NQP GEI +RG +MKGYL NP A E +GW H+GD+ +
Sbjct: 419 DTGDSLSRNQP--------GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD 470
Query: 443 DNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLK 502
D+ + I DRLK++I G ++ E+E +L HP + + AVVA +E GE P AFV +K
Sbjct: 471 DDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFV-VK 529
Query: 503 PEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
+ EL + +DV +F ++ Y V F ++PK+ +GKI + LRAK
Sbjct: 530 SKDSELSE----DDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAK 579
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 146/542 (26%), Positives = 235/542 (43%), Gaps = 64/542 (11%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPA 82
+ RAAT P ++ ++ R R A A + GL V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEA 140
+ A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
S ++ I +GD D + Y G P P + Q +
Sbjct: 121 GSGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PK ++ R A L + G+ G V L +P++H G+ A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218
Query: 259 -ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVN 316
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 219 LALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNAR 373
AGA P ++L + Q G ++ + YG TE + K + P F ++ R+
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI 337
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWF 432
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 338 GG-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWY 381
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+ D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKH 550
+S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 442 QSVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 551 LL 552
L
Sbjct: 497 QL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 146/542 (26%), Positives = 235/542 (43%), Gaps = 64/542 (11%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPA 82
+ RAAT P ++ ++ R R A A + GL V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEA 140
+ A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
S ++ I +GD D + Y G P P + Q +
Sbjct: 121 GSGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PK ++ R A L + G+ G V L +P++H G+ A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218
Query: 259 -ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVN 316
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 219 LALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNAR 373
AGA P ++L + Q G ++ + YG TE + K + P F ++ R+
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI 337
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWF 432
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 338 GG-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPEATAEKLQDGWY 381
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+ D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKH 550
+S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 442 QSVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 551 LL 552
L
Sbjct: 497 QL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 146/542 (26%), Positives = 235/542 (43%), Gaps = 64/542 (11%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPA 82
+ RAAT P ++ ++ R R A A + GL V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEA 140
+ A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
S ++ I +GD D + Y G P P + Q +
Sbjct: 121 GSGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PK ++ R A L + G+ G V L +P++H G+ A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218
Query: 259 -ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVN 316
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 219 LALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNAR 373
AGA P ++L + Q G ++ + YG TE + K + P F ++ R+
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI 337
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWF 432
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 338 GG-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWY 381
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+ D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKH 550
+S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 442 QSVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 551 LL 552
L
Sbjct: 497 QL 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 146/542 (26%), Positives = 235/542 (43%), Gaps = 64/542 (11%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPA 82
+ RAAT P ++ ++ R R A A + GL V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEA 140
+ A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
S ++ I +GD D + Y G P P + Q +
Sbjct: 121 GSGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PK ++ R A L + G+ G V L +P++H G+ A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218
Query: 259 -ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVN 316
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 219 LALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNAR 373
AGA P ++L + Q G ++ + YG TE + K + P F ++ R+
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI 337
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWF 432
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 338 GG-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWY 381
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+ D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKH 550
+S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 442 QSVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 551 LL 552
L
Sbjct: 497 QL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 146/542 (26%), Positives = 235/542 (43%), Gaps = 64/542 (11%)
Query: 25 FINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPA 82
+ RAAT P ++ ++ R R A A + GL V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEA 140
+ A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 NSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIAL 200
S ++ I +GD D + Y G P P + Q +
Sbjct: 121 GSGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA 258
YTSGTT PK ++ R A L + G+ G V L +P++H G+ A
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218
Query: 259 -ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVN 316
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 219 LALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVT 278
Query: 317 TAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNAR 373
AGA P ++L + Q G ++ + YG TE + K + P F ++ R+
Sbjct: 279 FAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRI 337
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWF 432
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 338 GG-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWY 381
Query: 433 HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492
+ D+AV P+ + I R+ D+IISGGENI E+E+VL P V E V+ D+RWG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKH 550
+S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 442 QSVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 551 LL 552
L
Sbjct: 497 QL 498
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 138/531 (25%), Positives = 230/531 (43%), Gaps = 46/531 (8%)
Query: 33 HPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92
HP +++ G + ++ + R A+ L++ +G G T V PNV Y F
Sbjct: 43 HPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLK 102
Query: 93 AGAV-LNSINIRLNATVVAFILSHASSAVVIVDQ-EFFSLAEEALKMMEANSEGKLKTPH 150
AG V LN++ + AFI ++ Q E FS + + + N L
Sbjct: 103 AGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVN----LSPEI 158
Query: 151 LIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASP 210
++++ ++ D L++ + A + F T P DE L + G+T +P
Sbjct: 159 ILMLNHQATDFGLLDW-IETPAETFVDFSST---------PADEVAFFQL--SGGSTGTP 206
Query: 211 KGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL--CGTSICLR 268
K + +H A I G+N L LP H S +L L G +
Sbjct: 207 KLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266
Query: 269 QVTAKAVYTAIATHGVTHFCAAP--VVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326
++ I H V P V++ A +D I L + GA P SL
Sbjct: 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLL---QVGGASFPESL 323
Query: 327 LFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLD 385
+ + ++ +G+ E G + + D F TQ R + D +
Sbjct: 324 ARQVPEVLNCKLQQVFGMAE--GLVNYTRLD-DSDEQIFTTQGRPISSD-------DEIK 373
Query: 386 VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDN 444
++D + + VP +G+ IG + RG GY ++P+ N + F + +++SGDL + PD
Sbjct: 374 IVDEQYRE-VP-EGE-IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDG 430
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
+ + R+KD I GGE I+S E+EK++ LHP V+ AA+VA DE++GE CAF+ +
Sbjct: 431 NLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSR-- 488
Query: 505 ADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLLRA 554
EL L + + A+ Y +P + + +LP +A GK+ K LR+
Sbjct: 489 NPELKAVVLRRHLMELGIAQ---YKLPDQIKLIESLPLTAVGKVDKKQLRS 536
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 146/541 (26%), Positives = 232/541 (42%), Gaps = 64/541 (11%)
Query: 26 INRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGL--GTTVSVIAPNVPAM 83
+ RAAT P ++ ++ R R A A + GL V+V+APN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHA--SSAVVIVDQEFFSLAEEALKMMEAN 141
A GAV +N RL + +A ++ ++AV+ V ++ A + ++
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQV------ADAIFQSG 121
Query: 142 SEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALG 201
S ++ I +GD D + Y G P P + Q +
Sbjct: 122 SGARI-----IFLGDLVRDGEPYSY---------------GPP--IEDPQREPAQPAFIF 159
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGA--VFLWTLPMFHGNGWSYTWSLA- 258
YTSGTT PK ++ R A L + G+ G V L P++H G+ A
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAAL 219
Query: 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNT 317
AL GT + + + + VT A P L+A+A A+ + L L ++ +V
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279
Query: 318 AGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVCAWKPEWDSLP-FETQARLNARQ 374
AGA P ++L + Q G ++ + YG TE K + P F ++ R+
Sbjct: 280 AGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIG 338
Query: 375 GVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS-CVMKGYLKNPKANEEAFANGWFH 433
G G+D I A + GE+++ S GYL P+A E +GW+
Sbjct: 339 G-------GVDEIVANGEE---------GELIVAASDSAFVGYLNQPQATAEKLQDGWYR 382
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+ D+AV P+ + I R+ D IISGGENI E+E+VL P V E V+ D+RWG+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCR-AKMPSYWVPKS-VVFAALPKSATGKIQKHL 551
S A V + L + A+ + FCR +++ + PK + LPK+A K+ +
Sbjct: 443 SVTACVVPR-----LGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 552 L 552
L
Sbjct: 498 L 498
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 128/506 (25%), Positives = 206/506 (40%), Gaps = 57/506 (11%)
Query: 70 GTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQ 125
G V+V+ P VP + G AG + I++ +T + + L + + ++ V Q
Sbjct: 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQ 158
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE 185
E ++A E + ++K +++ ++SCD L A +ETG E
Sbjct: 159 EVDTVASECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQE 207
Query: 186 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245
+ A+ +TSGT+ PK S+ L + A W + + +WT+
Sbjct: 208 AS-----------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI-- 253
Query: 246 FHGNGWSYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI 297
GW W+L A C L + + ++++ + AP+V +
Sbjct: 254 -SDTGWILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML 311
Query: 298 ANASPEDTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK 356
P L N V V + P +L +Q G I +YG TE TG + +
Sbjct: 312 LQQDLSSYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-- 366
Query: 357 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMK 414
+T G C D + +ID + N P IG V +R +
Sbjct: 367 --------KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
GY+ NP ++ GD +K D Y + R D+I S G I EVE L
Sbjct: 418 GYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
HP V+E AV++ PD GE AFV L + D +L +++ + ++ Y P+ +
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKI 537
Query: 535 VFAA-LPKSATGKIQKHLLRAKAKEM 559
F LPK+ TGKIQ+ LR K +M
Sbjct: 538 EFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 137/535 (25%), Positives = 227/535 (42%), Gaps = 51/535 (9%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + + R A A+ + + + V + N + GA G + N N
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE- 165
+ ++ + VV V +++ L+ + N + KL I+I D D + +
Sbjct: 112 RELLNSMNISQPTVVFV-------SKKGLQKI-LNVQKKLPIIQKIIIMDSKTDYQGFQS 163
Query: 166 -YALARGAIEYEKFLETGDPEFAWKPPE-DEWQSIALGY-TSGTTASPKGVVVSHRGAYL 222
Y L G E+ + P D ++IAL +SG+T PKGV + HR A +
Sbjct: 164 MYTFVT------SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV 217
Query: 223 -MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-TA 278
S I+G + L +P HG G T +CG + L + ++ +
Sbjct: 218 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-ICGFRVVLMYRFEEELFLRS 276
Query: 279 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR-- 336
+ + + P + + A ++ D L+N+ + + GAP + A++++ F
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKR-FHLP 334
Query: 337 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPV 395
I YGLTE T S PE D P + + V+D T + +
Sbjct: 335 GIRQGYGLTETT---SAILITPEGDDKPGAVG---------KVVPFFEAKVVDLDTGKTL 382
Query: 396 PADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKD 454
+ + GE+ +RG +M GY+ NP+A N +GW HSGD+A D + I DRLK
Sbjct: 383 GVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 440
Query: 455 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 514
+I G ++ E+E +L HP + +A V PD+ GE P A V L+ +K +
Sbjct: 441 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500
Query: 515 EDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA---KAKEMGPVKMI 565
S+ AK + VVF +PK TGK+ +R KAK+ G K++
Sbjct: 501 YVASQVTTAKK----LRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKLV 551
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 160/360 (44%), Gaps = 41/360 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
++ +TSGTT K V + R Y ++ G + +L LP++H +G S
Sbjct: 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226
Query: 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
T + + A+ + T I +TH P LN + + N+ +
Sbjct: 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY----NLQKILLG 282
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTE-----LTGPASVCAWKPEWDSLPFETQARLNAR 373
GA +++ Q I +++G+TE LT + +P+ +P
Sbjct: 283 GAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSAN------- 335
Query: 374 QGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH 433
+D + P + + GE++++G+ VM GYL P F NG+F+
Sbjct: 336 -------------VDVKIKNP---NKEGHGELMIKGANVMNGYLY-PTDLTGTFENGYFN 378
Query: 434 SGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGE 493
+GD+A + Y+ I DR KD+IISGGENI ++E V P + +A V PD+ WG+
Sbjct: 379 TGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQ 438
Query: 494 SPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV-VFAALPKSATGKIQKHLL 552
P + E+D + K +L +SK + Y VPK LP ++TGK+Q++ L
Sbjct: 439 VPKLYFV--SESD-ISKAQLIAYLSK----HLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 128/506 (25%), Positives = 206/506 (40%), Gaps = 57/506 (11%)
Query: 70 GTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI----VDQ 125
G V+V+ P VP + G AG + I++ +T + + L + + ++ V Q
Sbjct: 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQ 158
Query: 126 EFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPE 185
E ++A E + ++K +++ ++SCD L A +ETG E
Sbjct: 159 EVDTVASECPSL-------RIK----LLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQE 207
Query: 186 FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245
+ A+ +TSGT+ PK S+ L + A W + + +WT+
Sbjct: 208 AS-----------AIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG-WTGLQASDIMWTI-- 253
Query: 246 FHGNGWSYT--------WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAI 297
GW W+L A C L + + ++++ + AP+V +
Sbjct: 254 -SDTGWILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML 311
Query: 298 ANASPEDTILP-LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWK 356
P L N V V + P +L +Q G I +YG TE TG + +
Sbjct: 312 LQQDLSSYKFPHLQNCVTVGESLLPE--TLENWRAQTGLDIRESYGQTE-TGLTCMVS-- 366
Query: 357 PEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIV--MRGSCVMK 414
+T G C D + +ID + N P IG V +R +
Sbjct: 367 --------KTMKIKPGYMGTAASCYD-VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFS 417
Query: 415 GYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
GY+ NP ++ GD +K D Y + R D+I S G I EVE L
Sbjct: 418 GYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
HP V+E AV++ PD GE AFV L + D +L +++ + ++ Y P+ +
Sbjct: 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKI 537
Query: 535 VFAA-LPKSATGKIQKHLLRAKAKEM 559
F LPK+ TGKIQ+ LR K +M
Sbjct: 538 EFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 226/534 (42%), Gaps = 51/534 (9%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + + R A A+ + + + V + N + GA G + N N
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE- 165
+ ++ + VV V +++ L+ + N + KL I+I D D + +
Sbjct: 112 RELLNSMNISQPTVVFV-------SKKGLQKI-LNVQKKLPIIQKIIIMDSKTDYQGFQS 163
Query: 166 -YALARGAIEYEKFLETGDPEFAWKPPE-DEWQSIALGY-TSGTTASPKGVVVSHRGAYL 222
Y L G E+ + P D ++IAL +SG+T PKGV + HR A +
Sbjct: 164 MYTFVT------SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV 217
Query: 223 -MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-TA 278
S I+G + L +P HG G T +CG + L + ++ +
Sbjct: 218 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-ICGFRVVLMYRFEEELFLRS 276
Query: 279 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR-- 336
+ + + P + + A ++ D L+N+ + + GAP + A++++ F
Sbjct: 277 LQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKR-FHLP 334
Query: 337 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPV 395
I YGLTE T S PE D P + + V+D T + +
Sbjct: 335 GIRQGYGLTETT---SAILITPEGDDKPGAVG---------KVVPFFEAKVVDLDTGKTL 382
Query: 396 PADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKD 454
+ + GE+ +RG +M GY+ NP+A N +GW HSGD+A D + I DRLK
Sbjct: 383 GVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 440
Query: 455 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 514
+I G ++ E+E +L HP + +A V PD+ GE P A V L+ +K +
Sbjct: 441 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 500
Query: 515 EDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA---KAKEMGPVKM 564
S+ AK + VVF +PK TGK+ +R KAK+ G K+
Sbjct: 501 YVASQVTTAKK----LRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 226/534 (42%), Gaps = 51/534 (9%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + + R A A+ + + + V + N + GA G + N N
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE- 165
+ ++ + VV V +++ L+ + N + KL I+I D D + +
Sbjct: 117 RELLNSMNISQPTVVFV-------SKKGLQKI-LNVQKKLPIIQKIIIMDSKTDYQGFQS 168
Query: 166 -YALARGAIEYEKFLETGDPEFAWKPPE-DEWQSIALGY-TSGTTASPKGVVVSHRGAYL 222
Y L G E+ + P D ++IAL +SG+T PKGV + HR A +
Sbjct: 169 MYTFVT------SHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV 222
Query: 223 -MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-TA 278
S I+G + L +P HG G T +CG + L + ++ +
Sbjct: 223 RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-ICGFRVVLMYRFEEELFLRS 281
Query: 279 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR-- 336
+ + + P + + A ++ D L+N+ + + GAP + A++++ F
Sbjct: 282 LQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKR-FHLP 339
Query: 337 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPV 395
I YGLTE T S PE D P + + V+D T + +
Sbjct: 340 GIRQGYGLTETT---SAILITPEGDDKPGAVG---------KVVPFFEAKVVDLDTGKTL 387
Query: 396 PADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKD 454
+ + GE+ +RG +M GY+ NP+A N +GW HSGD+A D + I DRLK
Sbjct: 388 GVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKS 445
Query: 455 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 514
+I G ++ E+E +L HP + +A V PD+ GE P A V L+ +K +
Sbjct: 446 LIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVD 505
Query: 515 EDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA---KAKEMGPVKM 564
S+ AK + VVF +PK TGK+ +R KAK+ G K+
Sbjct: 506 YVASQVTTAKK----LRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 173/394 (43%), Gaps = 44/394 (11%)
Query: 169 ARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG- 227
ARGA+ E + GDP YTSGTT PKG V+ R A +L+
Sbjct: 143 ARGAVP-EDGADDGDPALVV-------------YTSGTTGPPKGAVIPRR-ALATTLDAL 187
Query: 228 ALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSI-CLRQVTAKAVYTAIATHGVTH 286
A W V + LP+FH +G G S+ L + + + + G T
Sbjct: 188 ADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATM 246
Query: 287 FCAAPVVLNAIANASPEDTILPLTNV---VNVNTAGAPPPPSLLFAMSQKGFRITHTYGL 343
P + + IA P D L + V+ + A P + G R+ YG+
Sbjct: 247 LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGM 306
Query: 344 TELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDV-IDARTNQPVPA-DGKT 401
TE SV A D P R G + L G+++ + P+ A DG++
Sbjct: 307 TETLMNTSVRA-----DGEP---------RAGTVGVPLPGVELRLVEEDGTPIAALDGES 352
Query: 402 IGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDR-LKDVIISG 459
+GEI +RG + YL P A AF +G+F +GD+AV+ PD Y+ I R D+I SG
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 460 GENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSK 519
G I + E+E L HP V EAAV PD GE A++ A G LA+ V+
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVA- 471
Query: 520 FCRAKMPSYWVPKSVVF-AALPKSATGKIQKHLL 552
A++ + P+ V + A+P++ GKI K L
Sbjct: 472 ---ARLAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 121/432 (28%), Positives = 184/432 (42%), Gaps = 46/432 (10%)
Query: 24 WFINRAATLHPTRKSVVYGSK--HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP 81
W + + AT+ P ++ V S T+ Q R A L+ L I G V+++ PN
Sbjct: 6 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 65
Query: 82 AMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN 141
+GA GAV IN RL A V+FILS + S VVI + + + + + A
Sbjct: 66 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 121
Query: 142 SEGKLKTPHLIV--IGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIA 199
++ P + IG +S + R A E +E G + ++
Sbjct: 122 AD----PPGTVTDWIGADSLAER------LRSAAADEPAVECGGDD-----------NLF 160
Query: 200 LGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAA 259
+ YTSGTT PKGVV +H + + + A + L LPMFH + T +A
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSA 219
Query: 260 LCG-TSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
+ G T I + Q A V++ I V A P +LN + PE L + T
Sbjct: 220 MRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQV-PEFAELDAPDFRYFITG 278
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
GAP P +L+ + K + Y LTE G ++ L E R G T
Sbjct: 279 GAPMPEALIKIYAAKNIEVVQGYALTESCGGGTL---------LLSEDALRKAGSAGRAT 329
Query: 379 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLA 438
+ D + R + V + GE+V++ ++K Y P+A +AF NGWF +GD+
Sbjct: 330 MFTD----VAVRGDDGVIREHGE-GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIG 384
Query: 439 VKHPDNYIEIKD 450
+ Y+ IKD
Sbjct: 385 EIDDEGYLYIKD 396
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/532 (24%), Positives = 219/532 (41%), Gaps = 61/532 (11%)
Query: 38 SVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97
+V+ G + ++ + + A +L + I G T V NV +Y F
Sbjct: 43 AVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFAL------- 95
Query: 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDE 157
++L V + SH S + + S E AL + + H + GD+
Sbjct: 96 ----LKLGVAPVLALFSHQRSEL----NAYASQIEPALLIADRQ--------HALFSGDD 139
Query: 158 SCDSKQLEYALAR--------GAIEYEKFLETGDPEFAWKP-PEDEWQSIALGYTSGTTA 208
++ E++ R G + + +F P P DE L + GTT
Sbjct: 140 FLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQL--SGGTTG 197
Query: 209 SPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALC--GTSIC 266
+PK + +H Y I + +L +P H S SL GT +
Sbjct: 198 TPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257
Query: 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE-DTILPLTNVVNVNTAGAPPPPS 325
+A + I H V P ++ A E ++ L ++ + GA +
Sbjct: 258 AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSAT 317
Query: 326 LLFAM-SQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
L + ++ G ++ +G+ E + + DS ++ QG D +
Sbjct: 318 LAARIPAEIGCQLQQVFGMAE-----GLVNYTRLDDS-----AEKIIHTQGYPMCPDDEV 367
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPD 443
V DA N P+P +G ++ RG +GY K+P+ N AF ANG++ SGDL P+
Sbjct: 368 WVADAEGN-PLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE 424
Query: 444 NYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKP 503
YI ++ R KD I GGE I++ E+E +L HP V+ AA+V+ DE GE CA++ +K
Sbjct: 425 GYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK- 483
Query: 504 EADELDKGKLAEDVSKFCRAK-MPSYWVPKSV-VFAALPKSATGKIQKHLLR 553
+ A V +F R + + + +P V +LP +A GK+ K LR
Sbjct: 484 ------EPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLR 529
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 167/377 (44%), Gaps = 33/377 (8%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 248
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
G T +CG + L + + + + T+ P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-AILNKSELLNKY 306
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 363
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 364 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 541
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 542 SATGKIQKHLLRAKAKE 558
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 248
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
G T +CG + L + + + + T P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 363
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 364 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 541
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 542 SATGKIQKHLLRAKAKE 558
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 133/533 (24%), Positives = 222/533 (41%), Gaps = 49/533 (9%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + + R A A+ + + + V + N + GA G + N N
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE- 165
+ ++ + VV V +++ L+ + N + KL I+I D D + +
Sbjct: 117 RELLNSMNISQPTVVFV-------SKKGLQKI-LNVQKKLPIIQKIIIMDSKTDYQGFQS 168
Query: 166 -YALARGAIEYEKFLETGDPEFAWKPPE-DEWQSIALGY-TSGTTASPKGVVVSHRG-AY 221
Y L G E+ + P D ++IAL +SG+T PKGV + HR A
Sbjct: 169 MYTFV------TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAV 222
Query: 222 LMSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAI 279
S I+G + L +P HG G T + + + + ++
Sbjct: 223 RFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSL 282
Query: 280 ATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--- 336
+ + P + + +A ++ D L+N+ + + GAP + A++++ F
Sbjct: 283 QDYKIQSALLVPTLFSFLAKSTLIDK-YDLSNLHEIASGGAPLSKEVGEAVAKR-FHLPG 340
Query: 337 ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVP 396
I YGLTE T S P+ D P + + V+D T + +
Sbjct: 341 IRQGYGLTETT---SAILITPKGDDKPGAVG---------KVVPFFEAKVVDLDTGKTLG 388
Query: 397 ADGKTIGEIVMRGSCVMKGYLKNPKA-NEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDV 455
+ + GE+ +RG +M GY+ NP+A N +GW HSGD+A D + I DRLK +
Sbjct: 389 VNQR--GELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSL 446
Query: 456 IISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAE 515
I G ++ E+E +L HP + +A V PD+ GE P A V L+ +K +
Sbjct: 447 IKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDY 506
Query: 516 DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRA---KAKEMGPVKM 564
S+ AK + VVF +PK TGK+ +R KAK+ G K+
Sbjct: 507 VASQVTTAKK----LRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 33/377 (8%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVVSHRGAYL-MSLNGALIWG--MNEGAVFLWTLPMFHG 248
D + +AL +SG+T PKGV ++H S I+G ++ G L +P HG
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWSYTWSLAALCGTSIC-LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL 307
G T +CG + L + + + + T P + AI N S
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 308 PLTNVVNVNTAGAPPPPSLLFAMSQK----GFRITHTYGLTELTGPASVCAWKPEWDSLP 363
L+N+V + + GAP + A++++ G R YGLTE T S PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARRFNLPGVR--QGYGLTETT---SAIIITPEGDDKP 361
Query: 364 FETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423
+ + + L VID T + + + + GE+ ++G +MKGY+ NP+A
Sbjct: 362 GASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEAT 410
Query: 424 EEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482
+E GW H+GD+ + + I DRLK +I G + E+E VL HP + +A
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAG 470
Query: 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPK 541
V PD GE P A V L+ + +K + S+ AK + V F +PK
Sbjct: 471 VAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK----RLRGGVRFVDEVPK 526
Query: 542 SATGKIQKHLLRAKAKE 558
TGKI +R K+
Sbjct: 527 GLTGKIDGRAIREILKK 543
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 128/520 (24%), Positives = 222/520 (42%), Gaps = 47/520 (9%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + + R A + + +GL ++V + N QF P+ GA+ I + +
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN-----SLQFFMPVCGALF--IGVGVAP 138
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCD--SKQL 164
T + +++ I ++ AL+ + + KL IVI D D KQ
Sbjct: 139 TNDIYNERELYNSLSISQPTIVFCSKRALQKI-LGVQKKLPIIQKIVILDSREDYMGKQS 197
Query: 165 EYALARGAIEYEKFLETGDPEFAWKPP--EDEWQSIALGYTSGTTASPKGVVVSHRGAYL 222
Y+ E L G E+ + P + E + + +SG+T PKGV ++H+ +
Sbjct: 198 MYSFI------ESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICV 251
Query: 223 -MSLNGALIWG--MNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVY-TA 278
S ++G + L +P HG G T CG I L + ++ +
Sbjct: 252 RFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLT-CGFRIVLMYRFEEELFLRS 310
Query: 279 IATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR-- 336
+ + + P + + A ++ D L+N+ + + GAP + A++++ F+
Sbjct: 311 LQDYKIQSALLVPTLFSFFAKSTLVDK-YDLSNLHEIASGGAPLAKEVGEAVAKR-FKLP 368
Query: 337 -ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPV 395
I YGLTE T +++ D P + + ++D T + +
Sbjct: 369 GIRQGYGLTETT--SAIIITPRGRDDKPGACG---------KVVPFFSAKIVDLDTGKTL 417
Query: 396 PADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKD 454
+ + GE+ ++G +MKGY+ NP+A +GW HSGD+A D Y I DRLK
Sbjct: 418 GVNQR--GELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKS 475
Query: 455 VIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLA 514
+I G + E+E +L HP + +A V PD GE P A V L+ E + + ++
Sbjct: 476 LIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDPDAGELPAAVVVLE-EGKTMTEQEVM 534
Query: 515 EDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLR 553
+ V+ A S + V F +PK TGKI +R
Sbjct: 535 DYVAGQVTA---SKRLRGGVKFVDEVPKGLTGKIDARKIR 571
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/527 (27%), Positives = 218/527 (41%), Gaps = 65/527 (12%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
T+ + R RRFASAL L + + ++ + A+ A GA AG V N L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 107 TVVAFILSHASSAVVIVDQEFFSLAEEALKMMEAN------SEGKLKTPHLIVIGDESCD 160
++L+H+ + VI +AL+ E + S+ + P L + +E D
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELID 169
Query: 161 SKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA 220
+ A TG + A+ W Y+SG+T PKG V +H
Sbjct: 170 AAAPAAKAA----------ATGCDDIAF------WL-----YSSGSTGKPKGTVHTHANL 208
Query: 221 Y-LMSLNGALIWGMNEGAVFLWTLPMFH----GNGWSYTWSLAALCGTSICL-RQVTAKA 274
Y L I G+ E V +F GNG ++ S+ A T+I + + TA A
Sbjct: 209 YWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGA---TAILMAERPTADA 265
Query: 275 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVN---TAGAPPPPSLLFAMS 331
++ + H T F P L A SP LP V + +AG P +
Sbjct: 266 IFARLVEHRPTVFYGVPT-LYANMLVSPN---LPARADVAIRICTSAGEALPREI----- 316
Query: 332 QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQ-GVRTICLDGLDV-IDA 389
G R T +G L G S + L R A + G + G ++ +
Sbjct: 317 --GERFTAHFGCEILDGIGST-------EMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD 367
Query: 390 RTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIK 449
VP DG+ +G++ ++G Y N + + F W SGD + P+
Sbjct: 368 EAGHAVP-DGE-VGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA 425
Query: 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELD 509
R D++ G+ +S VEVE VL H VLEAAVV D AFV LK E +
Sbjct: 426 GRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSE 484
Query: 510 KGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAK 555
LAE++ F + ++ + P+ +VF LPK+ATGKIQ+ LR +
Sbjct: 485 --ILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 131/524 (25%), Positives = 213/524 (40%), Gaps = 65/524 (12%)
Query: 56 RRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSH 115
++ AS +S+ + G V V PN + A IN + + IL+
Sbjct: 63 KKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILND 122
Query: 116 ASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175
+ + ++V + + L+ K + V+G E L G+ ++
Sbjct: 123 SEATTLVVHSXLYENFKPVLE--------KTGVERVFVVGGEV---NSLSEVXDSGSEDF 171
Query: 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE 235
E + + A P YT GTT PKGV ++H +L A+ G++
Sbjct: 172 ENVKVNPEEDVALIP-----------YTGGTTGXPKGVXLTHFNLAANALQLAVATGLSH 220
Query: 236 GAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLN 295
+ P FH + + + + + I + T A P LN
Sbjct: 221 XDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALN 280
Query: 296 AIANASPEDTILPLTNVVNVNTAGA-PPPPSL------LFAMSQKGFRITHTYGLTELTG 348
+ N + + V GA P P+L L A R+ H ++ G
Sbjct: 281 VLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN----QIWG 336
Query: 349 PASVCAWKPEWDSLPFETQARLN--ARQGVRTICLDGLDVIDARTNQPVPADGKTIG--- 403
C P + P RL+ QGV ++ L VI DG+ +G
Sbjct: 337 XTEAC---PXVTTNP---PLRLDKSTTQGVPXSDIE-LKVISLE-------DGRELGVGE 382
Query: 404 --EIVMRGSCVMKGYLKNPKANEEAF-----ANGWFHSGDLAVKHPDNYIEIKDRLKDVI 456
EIV+RG + KGY K K N+E + +F +GD+ + ++ +DR+K+VI
Sbjct: 383 SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVI 442
Query: 457 ISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKL-AE 515
G I+ E+E +L H V + AV+ +PDE GE P AF+ LKPE +GK+ E
Sbjct: 443 KYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEY----RGKVDEE 498
Query: 516 DVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAKE 558
D+ ++ R ++ Y + V F LP++A+GK+ + LLR K E
Sbjct: 499 DIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAE 542
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 129/542 (23%), Positives = 218/542 (40%), Gaps = 53/542 (9%)
Query: 27 NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86
+RAA + R ++ G+ H+++ + R R A+ KL I V V PN+ +E
Sbjct: 33 DRAAK-YGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKL 146
F GA+ ++ + + A +A I+ + +L + KL
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR---QVQSKL 148
Query: 147 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA-WKPPEDEWQSIALGYTSG 205
T I++ E+ E+FL D K PE + +A SG
Sbjct: 149 PTLKNIIVAGEA-----------------EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSG 191
Query: 206 TTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL-CGT 263
+ ++ Y+ SL ++ + ++ V+L LPM H S L L G
Sbjct: 192 GSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGG 251
Query: 264 SICLR-QVTAKAVYTAIATHGVT-HFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAP 321
+ L + + I VT P+ + + AS L V+ V A
Sbjct: 252 RVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK-- 309
Query: 322 PPPSLLFAMSQKGFRITHTYG--LTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTI 379
F+ ++ R+ +G L ++ G A D + + + QG
Sbjct: 310 ------FS-AEAARRVKAVFGCTLQQVFGMAEGLVNYTRLD----DPEEIIVNTQGKPMS 358
Query: 380 CLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGDLA 438
D V D P + G ++ RG ++GY K + N +F +G++ +GD+
Sbjct: 359 PYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 439 VKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498
D YI ++ R KD I GGE +++ EVE L HP V +AA+V+ PD+ GE C F
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 499 VTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+ + EA + A ++ F R + + +Y +P V F + P++ GK+ K LR
Sbjct: 476 IIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAI 529
Query: 557 KE 558
E
Sbjct: 530 SE 531
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 127/544 (23%), Positives = 217/544 (39%), Gaps = 57/544 (10%)
Query: 27 NRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86
+RAA + R ++ G+ H+++ + R R A+ KL I V V PN+ +E
Sbjct: 33 DRAAK-YGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 87 QFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKL 146
F GA+ ++ + + A +A I+ + +L + KL
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR---QVQSKL 148
Query: 147 KTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFA-WKPPEDEWQSIALGYTSG 205
T I++ E+ E+FL D K PE + +A SG
Sbjct: 149 PTLKNIIVAGEA-----------------EEFLPLEDLHTEPVKLPEVKSSDVAFLQLSG 191
Query: 206 TTASPKGVVVSHRGAYLMSLNGAL-IWGMNEGAVFLWTLPMFHGNGWSYTWSLAAL-CGT 263
+ ++ Y+ SL ++ + ++ V+L LP H S L L G
Sbjct: 192 GSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGG 251
Query: 264 SICLR-QVTAKAVYTAIATHGVTHFCAAP---VVLNAIANASPEDTILPLTNVVNVNTAG 319
+ L + + I VT P V A++ +D L+++ + G
Sbjct: 252 RVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDD----LSSLQVLQVGG 307
Query: 320 APPPPSLLFAMSQKGFRITHTYG--LTELTGPASVCAWKPEWDSLPFETQARLNARQGVR 377
A ++ R+ +G L ++ G A D + + + QG
Sbjct: 308 AK-------FSAEAARRVKAVFGCTLQQVFGXAEGLVNYTRLD----DPEEIIVNTQGKP 356
Query: 378 TICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA-NGWFHSGD 436
D V D P + G ++ RG ++GY K + N +F +G++ +GD
Sbjct: 357 XSPYDESRVWDDHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413
Query: 437 LAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPC 496
+ D YI ++ R KD I GGE +++ EVE L HP V +AA V+ PD+ GE C
Sbjct: 414 IVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSC 473
Query: 497 AFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFA-ALPKSATGKIQKHLLRA 554
F+ + EA + A ++ F R + + +Y +P V F + P++ GK+ K LR
Sbjct: 474 VFIIPRDEAPK------AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALRE 527
Query: 555 KAKE 558
E
Sbjct: 528 AISE 531
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 133/540 (24%), Positives = 218/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + +AG P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH-------SGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + R ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 217/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGCIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH-------SGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + R ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 42/373 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A+ YTSGTT KG +SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G+ I L + + A T P + SP T T +
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQ-SPRLT-KETTGHXRLFI 274
Query: 318 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 370
+G+ P L A + + G + YG TE S P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAKTGHAVLERYGXTETNXNTS----NPYDGDRVP------- 319
Query: 371 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
G L G+ V D T + +P IG I ++G V KGY + P+ + F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373
Query: 429 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
+ G+F +GDL Y+ I R KD++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVP 433
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 546
+GE A V ++ + +D+ ++ + ++ + PK V+F LP++ GK
Sbjct: 434 HADFGEGVTA-VVVRDKGATIDEAQVLHGLD----GQLAKFKXPKKVIFVDDLPRNTXGK 488
Query: 547 IQKHLLRAKAKEM 559
+QK++LR K++
Sbjct: 489 VQKNVLRETYKDI 501
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 133/540 (24%), Positives = 219/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E + A ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADE--GVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH-------SGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + R ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 217/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF-------HSGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + R ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 131/540 (24%), Positives = 216/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF-------HSGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 131/540 (24%), Positives = 216/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH-------SGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + R ++ P + + +LPK+ +G I + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 157/375 (41%), Gaps = 43/375 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 318 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 370
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 371 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 488 DERWGESPCAFVTLKPE--ADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSAT 544
+GE AFV L E E+ LAE++ F ++ + +P V+F LP++
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEI----LAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTM 489
Query: 545 GKIQKHLLRAKAKEM 559
G +Q ++LR ++
Sbjct: 490 GAVQXNVLRETYXDI 504
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 131/540 (24%), Positives = 216/540 (40%), Gaps = 51/540 (9%)
Query: 43 SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI 102
SKH ++ + +R RFA+ L L I G V++ P VP A GAV + I
Sbjct: 105 SKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFG 164
Query: 103 RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTP------HLIVIGD 156
+ VA + +SS +VI E ++ N + LK P H+IV+
Sbjct: 165 GFSPEAVAGRIIDSSSRLVITADEGVRAGRSI--PLKKNVDDALKNPNVTSVEHVIVLKR 222
Query: 157 ESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVS 216
D +++ R + + +E PE + E + + YTSG+T PKGV+ +
Sbjct: 223 TGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE-DPLFILYTSGSTGKPKGVLHT 277
Query: 217 HRGAYLM--SLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCG-TSICLRQV--- 270
G YL+ + ++ + G ++ T + G SY CG T++ V
Sbjct: 278 -TGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 271 -TAKAVYTAIATHGVTHFCAAPVVLNAI-ANASPEDTILPLTNVVNVNTAGAPPPPS--- 325
T + + H V AP + A+ A +++ + + G P P
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWE 396
Query: 326 -LLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGL 384
+ ++ + T+ TE G + P L A R
Sbjct: 397 WYWKKIGKEKCPVVDTWWQTETGG----------FMITPLPGAIELKAGSATRPFFGVQP 446
Query: 385 DVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFH-------SGDL 437
++D N+ P +G T G +V+ S G + + E F +F SGD
Sbjct: 447 ALVD---NEGHPQEGATEGNLVITDS--WPGQARTLFGDHERFEQTYFSTFKNMYFSGDG 501
Query: 438 AVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497
A + D Y I R+ DV+ G + + E+E L HP + EAAVV P G++ A
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYA 561
Query: 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKA 556
+VTL E +L +V + ++ P + + +LPK+ +GKI + +LR A
Sbjct: 562 YVTLN--HGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 137/590 (23%), Positives = 232/590 (39%), Gaps = 75/590 (12%)
Query: 1 MVGVKDIDDLPKISANYTALTPLWF------INRAATLHPTRKSVV----YGS-KHYTWH 49
V D + N+ L P F ++ A P + +++ YG+ K +T+
Sbjct: 31 FVSKTDFESYEDFQENFKILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFK 90
Query: 50 QTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVV 109
+ A+ K IG G V + + + G GA+ L +
Sbjct: 91 DLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDI 150
Query: 110 AFILSHASSAVVIVDQEFFSLAEEAL--KMMEANSE-GKLKTPHLIVIGDESCDSKQLEY 166
+ + A +++ +AE+ + ++ EA++E G + V GD
Sbjct: 151 VYRIEKAGLKMIVC------IAEDDVPEQVDEAHAECGDIPLKKAKVGGD---------- 194
Query: 167 ALARGAIEYEKFLETGDPEFAWKPPE--DEWQSIALGY-TSGTTASPKGVVVSHRGAY-L 222
+ G I++ K LE P F E + + I L Y +SGT PK +V H Y L
Sbjct: 195 -VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPL 251
Query: 223 MSLNGALIWGMNEGAVFLWTLPMFHGNGWS-------YTWSLAALCGTSICLRQVTAKAV 275
+ A W E +T+ +GW Y +A + AK +
Sbjct: 252 GHILTAKYWQNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNM 308
Query: 276 YTAIATHGVTHFCAAPVVLNAIANASPED-TILPLTNVVNVNTAGAPPPPSLLFAMSQ-K 333
+ +GVT FCA P + + ED + + + AG P P + +
Sbjct: 309 LEKASKYGVTTFCAPPTIYRFLIK---EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365
Query: 334 GFRITHTYGLTELTGPASVCAW-KPEWDSLPFET---QARLNARQG-VRTICLDGLDVID 388
G ++ +G TE + W +P+ S+ T + L R G + + +G VI+
Sbjct: 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVIN 425
Query: 389 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEI 448
+GK +G V G K+P+ EE + +G++H+GD+A D Y+
Sbjct: 426 T-------MEGKPVGLFVHYG--------KDPERTEETWHDGYYHTGDMAWMDEDGYLWF 470
Query: 449 KDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL 508
R D+I + G + EVE L HP VLE A+ PD G+ A + L +
Sbjct: 471 VGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPS 530
Query: 509 DKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLLRAKAK 557
D L ++ + Y P+ + F LPK+ +GKI++ +R K +
Sbjct: 531 D--SLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 125/559 (22%), Positives = 224/559 (40%), Gaps = 77/559 (13%)
Query: 11 PKISANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLG 70
P A+ T WF A +P ++ Y + ++ + R A L K G G
Sbjct: 456 PPAQAHETKPLTYWF-KEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKG 514
Query: 71 TTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSL 130
+ V++ + G AGA ++ +L ++++L+ +++A ++ QE +
Sbjct: 515 SVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE---M 571
Query: 131 AEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKP 190
E+A ++ T + I D++ +Q DP A P
Sbjct: 572 KEQAAELP--------YTGTTLFIDDQTRFEEQ-----------------ASDPATAIDP 606
Query: 191 PEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW-GMNEGAVFLWTLPMFHGN 249
+ + + YTSGTT PKG + +H A + L + + ++ FL ++ + +
Sbjct: 607 NDPAY----IMYTSGTTGKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFL-SVSNYAFD 659
Query: 250 GWSYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT 305
+++ + + L + + + + + I V A + N + +A ED
Sbjct: 660 AFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-EDW 718
Query: 306 ILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELT--GPASVCAWKPE-WDSL 362
+ L ++ + P + G ++ + YG TE T A V P+ SL
Sbjct: 719 MKGLRCILFGGERASVPHVRKALRIMGPG-KLINCYGPTEGTVFATAHVVHDLPDSISSL 777
Query: 363 PFETQARLNARQGVRTICLDGLDVIDARTN-QPVPADGKTIGEIVMRGSCVMKGYLKNPK 421
P + I + +++ ++ QP A +GE+ + G V KGY+
Sbjct: 778 PIG-----------KPISNASVYILNEQSQLQPFGA----VGELCISGMGVSKGYVNRAD 822
Query: 422 ANEEAFANGWF-------HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYL 474
+E F F +GDLA PD IE R+ D + G I E+EK L
Sbjct: 823 LTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882
Query: 475 HPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSV 534
+P V +A VVA E S A++ + + AEDV + ++P+Y VP++
Sbjct: 883 YPGVKDAVVVADRHESGDASINAYLVNRTQLS-------AEDVKAHLKKQLPAYMVPQTF 935
Query: 535 VF-AALPKSATGKIQKHLL 552
F LP + GK+ K LL
Sbjct: 936 TFLDELPLTTNGKVNKRLL 954
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 146/617 (23%), Positives = 236/617 (38%), Gaps = 133/617 (21%)
Query: 26 INRAATLHPTRKSVVYGSKH------YTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAP 78
++R A P +K++++ T+ + + A L+ + + G TV+V P
Sbjct: 88 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 147
Query: 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMM 138
VP GA+ + + ++ + ++ S VVI E
Sbjct: 148 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDE------------ 195
Query: 139 EANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPED-EWQS 197
+N GK+ IV D E R + Y K T +P A+ P D +W +
Sbjct: 196 -SNRGGKVIETKRIV------DDALRETPGVRHVLVYRK---TNNPSVAFHAPRDLDWAT 245
Query: 198 -------------------IALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-----WGM 233
+ L YTSG+T +PKGV S G YL+ GAL+ +
Sbjct: 246 EKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAG-YLL---GALLTMRYTFDT 301
Query: 234 NEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTA-----KAVYTAIATHGVTHFC 288
++ VF + G +Y L G + + + T + I H VT F
Sbjct: 302 HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFY 361
Query: 289 AAPVVLNAIANASPEDTIL---PLTNVVNVNTAGAPPPPSLLFAMSQKGFR----ITHTY 341
AP L + A D+ + L ++ + + G P + S+K + I TY
Sbjct: 362 VAPTALRLLKRAG--DSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY 419
Query: 342 GLTE----LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPV 395
TE L P V KP S PF G+ + LD
Sbjct: 420 WQTESGSHLVTPLAGGVTPMKPGSASFPF---------FGIDAVVLD------------- 457
Query: 396 PADGKTIGEIVMRGSCVMKG--------YLKNPKANEEAFAN---GWFHSGDLAVKHPDN 444
P G+ + G +K KN + + N G++ +GD A K D
Sbjct: 458 PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDG 517
Query: 445 YIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPE 504
YI I R+ DV+ G +S+ E+E + P+V E AVV D+ G++ AFV LK +
Sbjct: 518 YIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNK 577
Query: 505 A-------DELDKGKLAEDVSKF----CRAKMPSYWVPKSVVFA-ALPKSATGKIQKHLL 552
+ DEL +D+ K R + + PK ++ LPK+ +GKI + +L
Sbjct: 578 SSWSTATDDEL------QDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRIL 631
Query: 553 R----AKAKEMGPVKMI 565
R ++ ++G V +
Sbjct: 632 RKILAGESDQLGDVSTL 648
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 150/373 (40%), Gaps = 42/373 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 318 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 370
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 371 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 546
+GE AFV L E V ++ + +P V+F LP++ G
Sbjct: 434 HADFGEGVTAFVVLXREF-----APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 547 IQKHLLRAKAKEM 559
+Q ++LR ++
Sbjct: 489 VQXNVLRETYXDI 501
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 154/373 (41%), Gaps = 42/373 (11%)
Query: 199 ALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258
A+ YTSGTT G ++SH SL W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNT 317
G+ I L + +A T P + SP T T + +
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQ-SPRLTX-ETTGHMRLFI 274
Query: 318 AGAPPPPSLLFAMSQK------GFRITHTYGLTELTGPASVCAWKP-EWDSLPFETQARL 370
+G+ P L A + + G + YG+TE ++ P + D +P
Sbjct: 275 SGSAP----LLADTHREWSAXTGHAVLERYGMTE----TNMNTSNPYDGDRVP------- 319
Query: 371 NARQGVRTICLDGLD--VIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFA 428
G L G+ V D T +P IG I + G V GY + P+ F
Sbjct: 320 ----GAVGPALPGVSARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
Query: 429 N-GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487
+ G+F +GDL Y+ I R D++I+GG N+ E+E + P V+E+AV+ P
Sbjct: 374 DDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVP 433
Query: 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFA-ALPKSATGK 546
+GE A V ++ +D+ ++ + ++ + +P V+F LP++ G
Sbjct: 434 HADFGEGVTA-VVVRDXGATIDEAQVLHGLD----GQLAXFXMPXXVIFVDDLPRNTMGA 488
Query: 547 IQKHLLRAKAKEM 559
+Q ++LR ++
Sbjct: 489 VQXNVLRETYXDI 501
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 146/376 (38%), Gaps = 56/376 (14%)
Query: 202 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSL 257
+TSG+T PKGV+ HR G YL G G VFL P+ W ++ L
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV----SWDAFGLEL 272
Query: 258 -AALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
AL + C+ Q + +A HGVT + + N + + PE V
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGV 328
Query: 313 VNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLPFETQ 367
T G P P R+ + YG E T +V A +LP
Sbjct: 329 RYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVP 388
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
G R LD + PA +GE+ + G+ + GY+ P E F
Sbjct: 389 L-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434
Query: 428 ---------ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478
+ +GDLA + D +E R D + G + EVE L HP V
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAV 494
Query: 479 LEAAVVARPDERWGESP-CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVF 536
+AAV+A+ D R G+ A+V A+ D A ++ + +P+Y VP + V
Sbjct: 495 RQAAVLAQ-DSRLGDKQLVAYVV----AERADAPPDAAELRRHVAEALPAYMVPVECVPV 549
Query: 537 AALPKSATGKIQKHLL 552
LP++ GK+ + L
Sbjct: 550 DELPRTPNGKLDRRAL 565
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 156/375 (41%), Gaps = 54/375 (14%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLP-MFHGNGWSYTWSLA-- 258
+TSGTT PKGV +SH L+S W + + A + P M +S+ S+
Sbjct: 152 FTSGTTGQPKGVQISHDN--LLSFTN---WMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206
Query: 259 ----ALCGTSICL-RQVTA--KAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTN 311
AL GT L +++ A K ++T IA V + + P + +A S + +
Sbjct: 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFAD-MAMLSDDFCQAKMPA 265
Query: 312 VVNVNTAGAPPPPSLLFAMSQKGF------RITHTYGLTELTGPASVCAWKPEWDSLPFE 365
+ + G L + ++K F +I + YG TE T S E +
Sbjct: 266 LTHFYFDGE----ELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM----VD 317
Query: 366 TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNP 420
RL G D+ T + DGK + GEI++ G V KGYL NP
Sbjct: 318 NYTRLPI----------GYPKPDSPTYI-IDEDGKELSSGEQGEIIVTGPAVSKGYLNNP 366
Query: 421 KANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476
+ EAF +H+GD+ DN + RL I G I +V + L P
Sbjct: 367 EKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSP 426
Query: 477 LVLEAAVVARPD-ERWGESPCAFVTLKPEADE-LDKG-KLAEDVSKFCRAKMPSYWVPKS 533
+V A V R + E ++ A++ +K E D+ +L + + + M SY +P
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK 486
Query: 534 VVFA-ALPKSATGKI 547
++ +LP + GKI
Sbjct: 487 FLYRDSLPLTPNGKI 501
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 142/362 (39%), Gaps = 38/362 (10%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE-GAVFLWTLPMFHGNGWSYTWSLAAL 260
YTSGTT +PKG ++ H+G + + + E + + F + W +L
Sbjct: 189 YTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248
Query: 261 CGTSICLRQVTAKAVY--TAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTA 318
I L+ V I +T P + + PE IL + ++ TA
Sbjct: 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTY---VVHLDPE-RILSIQTLI---TA 301
Query: 319 GAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT 378
G+ PSL+ +K I + YG TE T A+ E A + Q
Sbjct: 302 GSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQ---- 356
Query: 379 ICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWF------ 432
+ ++D N + + G+ GE+ + G + +GY K P+ + F + F
Sbjct: 357 -----IYIVDE--NLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKL 408
Query: 433 -HSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491
+GD A D IE R+ + + G + EVE +L H + E AV D +
Sbjct: 409 YKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468
Query: 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVV-FAALPKSATGKIQKH 550
CA+ +K E + +F ++P+Y +P + +P ++ GKI +
Sbjct: 469 QPYLCAYFV-------SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRK 521
Query: 551 LL 552
L
Sbjct: 522 QL 523
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 162/383 (42%), Gaps = 49/383 (12%)
Query: 192 EDEW----QSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPM 245
+D+W ++ + YTSG+T +PKGV +S A L S + + ++ G +FL P
Sbjct: 136 QDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPVSGGKIFLNQAP- 192
Query: 246 FHGNGWSYTWSLAAL--C----GTSICLRQVTA---KAVYTAIATHGVTHFCAAP-VVLN 295
+S+ S+ L C GT C+ + K ++ + G+ + + P V
Sbjct: 193 -----FSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247
Query: 296 AIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK--GFRITHTYGLTELTGPASVC 353
+ + +LP + G P S+ A+ ++ +I +TYG TE T +V
Sbjct: 248 CLMDPGFSQDLLPHADTFMF--CGEVLPVSVAKALLERFPKAKIFNTYGPTEAT--VAVT 303
Query: 354 AWKPEWDSLPFETQARLN-ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412
+ + D + + A+ + +D QP+P K GEIV+ G V
Sbjct: 304 SVEITNDVISRSESLPVGFAKPDMNIFIMD-------EEGQPLPEGEK--GEIVIAGPSV 354
Query: 413 MKGYLKNPKANEEAF---ANGW-FHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468
+GYL P+ E+AF W + +GD D I + RL I G + E+
Sbjct: 355 SRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEI 413
Query: 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRAKMPS 527
E + V A V+ P + G + PE E +K +L + K A +P+
Sbjct: 414 EFHVRQSQYVRSAVVI--PYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPA 471
Query: 528 YWVPKSVVFA-ALPKSATGKIQK 549
Y +P+ ++ + +A GKI +
Sbjct: 472 YMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 387 IDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYI 446
I+ R P + +G I + G + GY + + +E A GW +GDL D Y+
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYL 453
Query: 447 EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485
+ R+KD+II G NI ++E + P + +A
Sbjct: 454 YVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA 492
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 200 LGYTSGTTASPKGVVVSHR--GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250
L YTSG+T P+GV+++HR A L +++ I + G + LP +H G
Sbjct: 180 LQYTSGSTRFPRGVIITHREVXANLRAISHDGI-KLRPGDRCVSWLPFYHDXG 231
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 159/393 (40%), Gaps = 43/393 (10%)
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
T +PE A K E+ + + YTSG+T +PKGV +++ + + + G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 296
P + GT + + K ++ ++ + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 297 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 350
+ AS +++LP N+ G P + + ++ + I +TYG TE +TG
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410
++ SLP C ++ + + + DG+ GEIV+ G
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 411 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 464
V GYL +P+ E+AF G+ A K D Y+E RL I G +
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 523
E+E L V A +V P ++ + + P +K KL + K
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 524 KMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
++P+Y +P+ ++ +++P + GK+ + L ++
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 159/393 (40%), Gaps = 43/393 (10%)
Query: 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFL 240
T +PE A K E+ + + YTSG+T +PKGV +++ + + + G VFL
Sbjct: 134 TPNPEHAVKGDENFY----IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 241 WTLPMFHGNGWSYTWSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLN-A 296
P + GT + + K ++ ++ + + + P
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 297 IANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFR--ITHTYGLTE----LTGPA 350
+ AS +++LP N+ G P + + ++ + I +TYG TE +TG
Sbjct: 250 LMEASFSESMLP--NMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIH 307
Query: 351 SVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGS 410
++ SLP C ++ + + + DG+ GEIV+ G
Sbjct: 308 VTEEVLDQYKSLPV-------------GYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGP 353
Query: 411 CVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD-NYIE-----IKDRLKDVIISGGENIS 464
V GYL +P+ E+AF G+ A K D Y+E RL I G +
Sbjct: 354 SVSVGYLGSPELTEKAFT---MIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKG-KLAEDVSKFCRA 523
E+E L V A +V P ++ + + P +K KL + K
Sbjct: 411 LEEIEHHLRACSYVEGAVIV--PIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNE 468
Query: 524 KMPSYWVPKSVVF-AALPKSATGKIQKHLLRAK 555
++P+Y +P+ ++ +++P + GK+ + L ++
Sbjct: 469 RLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSE 501
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG---------WFHSGDLAVKHPDNY 445
+P D +GEI ++ + V KGY P+ AFA + +GDL H +N
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450
Query: 446 IEIKDRLKDVIISGGENISSVEVEKVLYLHPL 477
+ + R+KD+II G+N ++E L PL
Sbjct: 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPL 482
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 187 AWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRGAYLMSLNGAL--IWGMNEGAVFLWTL 243
+W+P + IA L YTSG+T PKGV VSH L +LN +E +F W L
Sbjct: 158 SWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNL-LDNLNKIFTSFHXNDETIIFSW-L 215
Query: 244 PMFHGNG 250
P H G
Sbjct: 216 PPHHDXG 222
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 143/375 (38%), Gaps = 53/375 (14%)
Query: 202 YTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT-WSLAAL 260
YTSGTT +PKGV V H + ++ + +L +FH + ++ W +
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGA 237
Query: 261 CGTSICLRQV------TAKAVYTAIATHGVTHFCAAPVVLNAIANASPED--TILPLTNV 312
T L + T + I GVT P A+ A+ + L V
Sbjct: 238 FSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYV 297
Query: 313 VNVNTAGAPP---PPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQAR 369
+ P P + F + + R+ + YG+TE T + + + R
Sbjct: 298 IFGGEKLTAPMLRPWAKAFGLDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 370 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
G R + DG DV A G+T GE+ + G+ + +GYL+ P+ E F
Sbjct: 356 ALPSFGTRVVGDDGRDV----------APGET-GELWLSGAQLAEGYLRRPELTAEKFPE 404
Query: 430 ----------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVL 479
++ +GDL + PD + R I G I ++E + H V+
Sbjct: 405 VTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVV 464
Query: 480 EAAVVARP----DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSV 534
+A V R D R CA+V + A A ++ + +P+Y P + +
Sbjct: 465 DAVVTVREFKPGDLRL---VCAYVAREGSA------TTARELRNHIKTLLPAYMHPARYL 515
Query: 535 VFAALPKSATGKIQK 549
LP++ GK+ +
Sbjct: 516 PLPGLPRTVNGKVDR 530
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 97/273 (35%), Gaps = 49/273 (17%)
Query: 202 YTSGTTASPKGVVVSHR---GAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW-SYTWSL 257
+TSG+T PKGV+ HR G YL G G VFL P+ W ++ L
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPV----SWDAFGLEL 272
Query: 258 -AALCGTSICLRQVTAK----AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNV 312
AL + C+ Q + +A HGVT + + N + + PE V
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGV 328
Query: 313 VNVNTAGAPP--PPSLLFAMSQKGFRITHTYGLTE---LTGPASVCAWKPEWDSLPFETQ 367
T G P P R+ + YG E T +V A +LP
Sbjct: 329 RYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVP 388
Query: 368 ARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF 427
G R LD + PA +GE+ + G+ + GY+ P E F
Sbjct: 389 L-----AGKRAYVLD---------DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434
Query: 428 ---------ANGWFHSGDLAVKHPDNYIEIKDR 451
+ +GDLA + D +E R
Sbjct: 435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 135/365 (36%), Gaps = 55/365 (15%)
Query: 200 LGYTSGTTASPKGVVVS-HRGAYLMSLNGALIWGMNEGAVFLWTLPMF----------HG 248
L YTSG+T +PKGV VS H + G LI + ++ L + F H
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 249 NGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILP 308
W LC + R + GVTH P +L+ PED P
Sbjct: 240 GEXFLAWRFG-LCAVT-GERLSXLDDLPRTFRELGVTHAGIVPSLLDQTG-LVPEDA--P 294
Query: 309 LTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQA 368
+ V P +++ S + + + YG TE+T S P+ D
Sbjct: 295 HLVYLGVGGEKXTPRTQQIWSSSDR-VALVNVYGPTEVTIGCSAGRILPDSD-------- 345
Query: 369 RLNARQGVRTICLDGLDVIDARTNQPVPADGKTI-----GEIVMRGSCVMKGYLKNPKAN 423
T C+ G + D+ + P + + GE+V+ GS V GYL P A
Sbjct: 346 ---------TRCI-GHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAK 395
Query: 424 EEAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLY-LHPLVLE 480
NG + +GD+ D+ I R + + G+ + EV +V+ L P ++
Sbjct: 396 GFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDID 455
Query: 481 AAVVARPDERWGESPCAFVTLKPEADELDKGKLA----------EDVSKFCRAKMPSYWV 530
VV G S V+ + +G+L + + C +P+Y V
Sbjct: 456 --VVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYXV 513
Query: 531 PKSVV 535
P ++
Sbjct: 514 PDFII 518
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 154/431 (35%), Gaps = 91/431 (21%)
Query: 47 TWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNA 106
TW Q YRR A LS+ G V + AP A GA AG + +++
Sbjct: 60 TWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGG 118
Query: 107 TV---VAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163
+LS +S ++ S A + + A G+ P +I +
Sbjct: 119 VTDERSDSVLSDSSPVAILTT----SSAVDDVVQHVARRPGE-SPPSIIEV--------- 164
Query: 164 LEYALARGAIEYEKFLETGDPE-FAWKPPEDEWQSIA-LGYTSGTTASPKGVVVSHRG-- 219
L+ P + +K EDE+ S A L YTSG+T +P GVV SH+
Sbjct: 165 -------------DLLDLDAPNGYTFK--EDEYPSTAYLQYTSGSTRTPAGVVXSHQNVR 209
Query: 220 --------AYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-- 269
Y +G I N A+ W LP +H G L G L
Sbjct: 210 VNFEQLXSGYFADTDG--IPPPNS-ALVSW-LPFYHDXGLVIGICAPILGGYPAVLTSPV 265
Query: 270 --VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED------------TILPLTNVVNV 315
+ A + + F AAP +A D TIL + V
Sbjct: 266 SFLQRPARWXHLXASDFHAFSAAPNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQA 325
Query: 316 NTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCAWKPEW--DSLPFETQARLNAR 373
T F + ++ R +YGL E T V KP +++ F+T++ L+A
Sbjct: 326 ATIKRFADRFARFNLQERVIR--PSYGLAEAT--VYVATSKPGQPPETVDFDTES-LSA- 379
Query: 374 QGVRTICLDG---------------LDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418
G C G + ++D+ T P DG T+GEI + G V GY +
Sbjct: 380 -GHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECP-DG-TVGEIWVHGDNVANGYWQ 436
Query: 419 NPKANEEAFAN 429
P +E F
Sbjct: 437 KPDESERTFGG 447
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 109/277 (39%), Gaps = 47/277 (16%)
Query: 192 EDEWQSIA-LGYTSGTTASPKGVVVSHRGA-----YLMSLNGALIWGM--NEGAVFLWTL 243
EDE+ S A L YTSG+T +P GVV+SH+ LMS A G+ A+ W L
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-L 237
Query: 244 PMFHGNGWSYTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIAN 299
P +H G L G L + A + + F AAP +A
Sbjct: 238 PFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAA 297
Query: 300 ASPEDTIL---PLTNVVNVNTAGAPPPPSLLFAMSQKGFR-------ITHTYGLTELTGP 349
D + L N++ + + + + + + R I +Y L E T
Sbjct: 298 RRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT-- 355
Query: 350 ASVCAWKPEW--DSLPFETQARLNARQGVRTICLDG---------------LDVIDARTN 392
V KP +++ F+T++ L+A G C G + ++D+ T
Sbjct: 356 VYVATSKPGQPPETVDFDTES-LSA--GHAKPCAGGGATSLISYMLPRSPIVRIVDSDTC 412
Query: 393 QPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN 429
P DG T+GEI + G V GY + P +E F
Sbjct: 413 IECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFGG 447
>pdb|3QLB|A Chain A, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
pdb|3QLB|B Chain B, Enantiopyochelin Outer Membrane Tonb-Dependent Transporter
From Pseudomonas Fluorescens Bound To The
Ferri-Enantiopyochelin
Length = 748
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 184 PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL 229
P F WKP +D ++ YT T +P+ V + +G L + NG +
Sbjct: 268 PSFTWKPNDDTSLTLLADYTQDTFGAPR-VFLPAQGTLLGNPNGKV 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,169,243
Number of Sequences: 62578
Number of extensions: 720182
Number of successful extensions: 1692
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1499
Number of HSP's gapped (non-prelim): 107
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)