Query 008342
Match_columns 569
No_of_seqs 178 out of 2271
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 23:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 9.9E-81 3.4E-85 656.6 44.6 511 12-561 11-545 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 5.7E-80 1.9E-84 648.9 49.7 504 19-558 21-535 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 5.5E-80 1.9E-84 645.6 48.2 503 14-560 10-515 (517)
4 1v25_A Long-chain-fatty-acid-C 100.0 2.1E-80 7.3E-85 652.4 40.7 513 17-559 15-537 (541)
5 3etc_A AMP-binding protein; ad 100.0 1.8E-78 6.3E-83 641.1 52.2 505 18-558 53-579 (580)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.8E-79 2.3E-83 640.7 48.4 500 17-559 22-532 (539)
7 3rix_A Luciferase, luciferin 4 100.0 4.8E-80 1.6E-84 651.5 37.2 523 4-562 4-545 (550)
8 4fuq_A Malonyl COA synthetase; 100.0 1.5E-78 5.1E-83 632.6 47.9 491 24-559 4-501 (503)
9 2d1s_A Luciferase, luciferin 4 100.0 3.2E-78 1.1E-82 636.4 49.0 504 19-559 24-544 (548)
10 3ivr_A Putative long-chain-fat 100.0 1.2E-79 4.1E-84 643.0 36.9 499 16-562 2-505 (509)
11 3o83_A Peptide arylation enzym 100.0 4.1E-79 1.4E-83 643.1 38.3 504 16-559 26-541 (544)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.6E-77 8.9E-82 624.2 49.9 483 20-557 2-503 (504)
13 3c5e_A Acyl-coenzyme A synthet 100.0 8.5E-77 2.9E-81 627.6 48.8 504 21-561 39-565 (570)
14 3fce_A D-alanine--poly(phospho 100.0 9.7E-77 3.3E-81 621.5 48.3 497 20-562 1-508 (512)
15 3e7w_A D-alanine--poly(phospho 100.0 9.3E-77 3.2E-81 621.1 47.6 494 20-560 1-505 (511)
16 1pg4_A Acetyl-COA synthetase; 100.0 1.7E-76 6E-81 634.6 50.0 513 21-559 77-622 (652)
17 1ry2_A Acetyl-coenzyme A synth 100.0 3E-76 1E-80 632.9 48.5 517 20-559 82-638 (663)
18 3rg2_A Enterobactin synthase c 100.0 2.1E-75 7E-80 623.8 52.1 501 15-559 22-535 (617)
19 1amu_A GRSA, gramicidin synthe 100.0 7.6E-76 2.6E-80 619.4 47.3 479 19-556 38-527 (563)
20 2v7b_A Benzoate-coenzyme A lig 100.0 2.5E-75 8.6E-80 613.3 49.2 500 19-554 22-528 (529)
21 3ipl_A 2-succinylbenzoate--COA 100.0 8.9E-76 3.1E-80 612.8 43.4 497 20-560 1-499 (501)
22 3l8c_A D-alanine--poly(phospho 100.0 1.7E-75 6E-80 613.6 44.8 498 19-561 3-515 (521)
23 4gr5_A Non-ribosomal peptide s 100.0 1.8E-76 6.3E-81 626.4 35.2 483 18-556 73-569 (570)
24 4dg8_A PA1221; ANL superfamily 100.0 1.2E-74 4E-79 615.2 44.3 478 16-558 23-513 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 1.9E-75 6.6E-80 655.9 36.7 512 19-560 60-584 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.7E-74 9.4E-79 600.3 31.9 480 14-554 16-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 1.6E-73 5.4E-78 604.1 34.0 507 9-563 9-548 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 3.1E-72 1.1E-76 598.6 38.1 513 11-562 2-571 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.5E-70 5.1E-75 584.4 42.5 506 13-561 14-566 (576)
30 2vsq_A Surfactin synthetase su 100.0 9.1E-71 3.1E-75 632.8 42.6 487 15-556 459-958 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.1E-58 7.1E-63 479.8 30.4 407 10-451 14-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 9.1E-53 3.1E-57 417.1 24.1 315 195-560 37-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.8E-47 6E-52 391.7 22.7 329 192-551 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 3.3E-47 1.1E-51 390.5 23.5 330 192-552 89-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 3.9E-47 1.3E-51 389.2 22.9 328 192-551 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 4.8E-30 1.6E-34 256.3 14.1 235 192-461 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.5 2.1E-14 7.2E-19 115.0 7.1 96 450-549 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 1E-13 3.5E-18 110.7 9.2 96 450-550 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.8 1.5E-07 5E-12 96.5 18.7 85 401-502 397-493 (609)
40 4eql_A 4-substituted benzoates 98.8 6.8E-08 2.3E-12 98.9 15.4 60 400-475 384-447 (581)
41 4epl_A Jasmonic acid-amido syn 98.7 1.3E-07 4.4E-12 96.5 14.9 86 401-503 392-489 (581)
42 2y27_A Phenylacetate-coenzyme 91.9 0.92 3.2E-05 45.2 11.1 89 44-133 108-198 (437)
43 2y4o_A Phenylacetate-coenzyme 91.5 1 3.5E-05 44.9 10.9 89 44-133 110-200 (443)
44 3qov_A Phenylacetate-coenzyme 91.3 1 3.6E-05 44.7 10.7 90 44-134 104-195 (436)
45 3ipl_A 2-succinylbenzoate--COA 78.6 14 0.00048 37.1 11.6 95 33-131 161-265 (501)
46 3hgu_A EHPF; phenazine, antibi 77.3 5.8 0.0002 38.1 7.9 86 44-131 109-219 (369)
47 2d1s_A Luciferase, luciferin 4 76.6 12 0.0004 38.4 10.3 95 35-131 192-297 (548)
48 3rix_A Luciferase, luciferin 4 74.5 13 0.00045 38.0 10.1 85 213-298 49-137 (550)
49 3ivr_A Putative long-chain-fat 74.0 23 0.00077 35.7 11.6 83 213-296 30-116 (509)
50 1mdb_A 2,3-dihydroxybenzoate-A 73.3 29 0.001 35.2 12.3 97 33-133 180-288 (539)
51 1v25_A Long-chain-fatty-acid-C 72.4 33 0.0011 34.9 12.4 85 212-297 45-133 (541)
52 3o83_A Peptide arylation enzym 70.5 28 0.00095 35.4 11.4 96 33-132 189-296 (544)
53 3ezx_A MMCP 1, monomethylamine 70.5 41 0.0014 29.3 10.9 89 238-330 95-195 (215)
54 3ni2_A 4-coumarate:COA ligase; 69.6 24 0.00081 35.9 10.6 84 213-297 48-135 (536)
55 3r44_A Fatty acyl COA syntheta 69.0 27 0.00091 35.3 10.8 84 44-132 188-273 (517)
56 3g7s_A Long-chain-fatty-acid-- 67.8 39 0.0013 34.3 11.9 85 213-298 51-139 (549)
57 3kxw_A Saframycin MX1 syntheta 67.7 27 0.00093 35.9 10.7 97 33-132 165-275 (590)
58 3fce_A D-alanine--poly(phospho 66.9 18 0.00061 36.5 9.0 94 33-129 142-247 (512)
59 4gs5_A Acyl-COA synthetase (AM 64.9 30 0.001 33.0 9.7 81 44-130 55-136 (358)
60 1t5h_X 4-chlorobenzoyl COA lig 63.3 58 0.002 32.6 12.0 84 213-297 28-117 (504)
61 3etc_A AMP-binding protein; ad 63.2 52 0.0018 33.8 11.7 94 193-291 69-166 (580)
62 3rg2_A Enterobactin synthase c 62.8 51 0.0017 34.1 11.7 97 33-133 182-290 (617)
63 3e7w_A D-alanine--poly(phospho 62.3 23 0.00079 35.7 8.8 94 33-129 141-246 (511)
64 3c5e_A Acyl-coenzyme A synthet 61.2 34 0.0012 35.1 9.9 85 213-298 72-161 (570)
65 3tbh_A O-acetyl serine sulfhyd 60.3 58 0.002 30.6 10.6 91 34-126 34-127 (334)
66 1amu_A GRSA, gramicidin synthe 60.1 59 0.002 33.1 11.5 84 213-297 63-150 (563)
67 3t5a_A Long-chain-fatty-acid-- 59.6 66 0.0023 31.8 11.6 105 194-300 38-149 (480)
68 2v7b_A Benzoate-coenzyme A lig 59.4 36 0.0012 34.4 9.7 82 213-295 47-132 (529)
69 1pg4_A Acetyl-COA synthetase; 58.2 71 0.0024 33.3 11.9 93 195-291 91-187 (652)
70 1ry2_A Acetyl-coenzyme A synth 52.9 66 0.0022 33.7 10.5 95 194-292 96-195 (663)
71 4gr5_A Non-ribosomal peptide s 52.0 91 0.0031 31.7 11.3 79 214-293 100-182 (570)
72 4fuq_A Malonyl COA synthetase; 51.9 52 0.0018 33.0 9.3 79 214-293 28-110 (503)
73 3nyq_A Malonyl-COA ligase; A/B 50.5 58 0.002 32.6 9.4 95 33-132 153-258 (505)
74 3tsy_A Fusion protein 4-coumar 48.3 96 0.0033 34.2 11.4 94 193-294 74-171 (979)
75 3vc3_A Beta-cyanoalnine syntha 45.5 82 0.0028 29.7 8.9 92 34-126 49-142 (344)
76 4dg8_A PA1221; ANL superfamily 44.1 69 0.0024 33.2 8.9 96 33-132 162-268 (620)
77 3l8c_A D-alanine--poly(phospho 43.1 75 0.0026 31.8 8.9 77 214-291 29-109 (521)
78 4eez_A Alcohol dehydrogenase 1 42.1 1.1E+02 0.0037 28.7 9.4 79 45-126 136-217 (348)
79 3gqw_A Fatty acid AMP ligase; 40.1 1.2E+02 0.0041 30.7 10.0 84 213-297 48-142 (576)
80 2q3b_A Cysteine synthase A; py 36.8 2.4E+02 0.0084 25.8 10.7 89 35-126 31-122 (313)
81 4h1h_A LMO1638 protein; MCCF-l 36.4 1.1E+02 0.0037 28.6 8.1 16 65-80 7-22 (327)
82 3tla_A MCCF; serine protease, 35.6 1E+02 0.0035 29.5 7.8 17 65-81 38-54 (371)
83 1z7w_A Cysteine synthase; tran 35.5 2.6E+02 0.0089 25.8 10.7 91 34-126 29-122 (322)
84 2zzt_A Putative uncharacterize 35.3 1.4E+02 0.0048 22.3 8.1 62 465-526 12-73 (107)
85 2egu_A Cysteine synthase; O-ac 35.0 2.7E+02 0.0091 25.5 10.6 89 35-126 29-120 (308)
86 3sr3_A Microcin immunity prote 33.9 1.3E+02 0.0043 28.3 8.1 16 66-81 9-24 (336)
87 1y80_A Predicted cobalamin bin 33.6 2.2E+02 0.0077 24.2 9.4 96 44-139 55-164 (210)
88 3s2e_A Zinc-containing alcohol 33.0 1.3E+02 0.0043 28.1 8.2 79 44-126 138-219 (340)
89 3ju7_A Putative PLP-dependent 33.0 1E+02 0.0034 29.4 7.5 60 62-124 70-136 (377)
90 2pqm_A Cysteine synthase; OASS 32.9 2.7E+02 0.0092 26.0 10.4 89 35-126 42-133 (343)
91 3ite_A SIDN siderophore synthe 32.7 2.4E+02 0.0082 28.4 10.8 95 194-291 34-134 (562)
92 3dzz_A Putative pyridoxal 5'-p 32.4 3E+02 0.01 25.7 11.0 55 67-124 106-167 (391)
93 1ve1_A O-acetylserine sulfhydr 31.9 3E+02 0.01 25.1 11.0 63 63-126 52-117 (304)
94 1h2b_A Alcohol dehydrogenase; 31.6 1.4E+02 0.0048 28.1 8.3 63 61-126 176-240 (359)
95 3jv7_A ADH-A; dehydrogenase, n 31.2 2E+02 0.0069 26.7 9.3 78 46-126 143-225 (345)
96 4e5s_A MCCFLIKE protein (BA_56 31.0 1.4E+02 0.0048 27.9 7.9 16 66-81 8-23 (331)
97 3l6b_A Serine racemase; pyrido 30.4 1.4E+02 0.0046 28.2 7.8 59 70-129 76-134 (346)
98 4aec_A Cysteine synthase, mito 30.1 3.9E+02 0.013 25.9 14.3 63 63-125 166-229 (430)
99 2cvi_A 75AA long hypothetical 30.0 1E+02 0.0036 21.5 5.4 47 465-526 15-61 (83)
100 2v03_A Cysteine synthase B; py 27.9 3.5E+02 0.012 24.6 10.9 89 35-126 25-116 (303)
101 3tqh_A Quinone oxidoreductase; 27.6 1.4E+02 0.0048 27.5 7.4 76 45-125 125-204 (321)
102 3ri6_A O-acetylhomoserine sulf 27.5 1.9E+02 0.0066 28.1 8.6 54 74-127 100-156 (430)
103 3two_A Mannitol dehydrogenase; 27.4 1.5E+02 0.0051 27.8 7.6 75 44-122 148-225 (348)
104 2cf5_A Atccad5, CAD, cinnamyl 26.9 1.3E+02 0.0045 28.3 7.2 79 44-125 151-233 (357)
105 1o69_A Aminotransferase; struc 26.7 2.3E+02 0.0079 26.8 9.0 57 66-125 68-130 (394)
106 2ayi_A Aminopeptidase T; metal 25.8 1E+02 0.0036 29.8 6.1 51 51-101 4-58 (408)
107 3fpc_A NADP-dependent alcohol 25.5 1.3E+02 0.0046 28.1 6.9 77 44-124 138-218 (352)
108 3isl_A Purine catabolism prote 24.9 3.6E+02 0.012 25.4 10.2 69 56-125 47-117 (416)
109 1eg5_A Aminotransferase; PLP-d 24.8 2.3E+02 0.0079 26.4 8.6 55 68-123 87-145 (384)
110 1y7l_A O-acetylserine sulfhydr 24.0 4.2E+02 0.014 24.2 10.5 89 35-126 26-117 (316)
111 3ist_A Glutamate racemase; str 24.0 2.3E+02 0.0079 25.5 7.7 56 24-83 19-80 (269)
112 1mdo_A ARNB aminotransferase; 23.9 1.9E+02 0.0064 27.3 7.8 53 67-123 76-133 (393)
113 3dwg_A Cysteine synthase B; su 23.8 4.3E+02 0.015 24.3 10.3 63 63-126 65-128 (325)
114 3ss7_X D-serine dehydratase; t 23.7 3E+02 0.01 26.9 9.1 102 35-136 101-225 (442)
115 4h27_A L-serine dehydratase/L- 23.7 1.9E+02 0.0066 27.3 7.6 56 77-132 99-154 (364)
116 4dq6_A Putative pyridoxal phos 23.4 4.2E+02 0.014 24.7 10.2 52 67-123 111-170 (391)
117 1zsy_A Mitochondrial 2-enoyl t 23.3 2.5E+02 0.0084 26.3 8.3 79 45-124 139-223 (357)
118 4ej6_A Putative zinc-binding d 23.2 1.7E+02 0.0059 27.7 7.2 58 62-123 175-233 (370)
119 3byp_A CZRB protein; membrane 23.1 1.8E+02 0.0062 20.8 5.8 63 464-526 11-75 (94)
120 3mfq_A TROA, high-affinity zin 23.1 1.7E+02 0.0057 26.6 6.7 85 48-134 138-229 (282)
121 3op7_A Aminotransferase class 23.1 3.3E+02 0.011 25.3 9.4 54 67-124 102-161 (375)
122 3pc3_A CG1753, isoform A; CBS, 23.0 2.6E+02 0.0088 28.1 8.8 61 64-125 106-167 (527)
123 1pl8_A Human sorbitol dehydrog 23.0 1.9E+02 0.0066 27.1 7.5 77 44-125 144-224 (356)
124 1c7n_A Cystalysin; transferase 22.9 4.3E+02 0.015 24.8 10.2 53 68-123 111-170 (399)
125 4a2c_A Galactitol-1-phosphate 22.7 3.6E+02 0.012 24.9 9.4 63 60-126 151-214 (346)
126 1yqd_A Sinapyl alcohol dehydro 22.6 2.2E+02 0.0076 26.8 7.9 62 61-125 178-240 (366)
127 1zjc_A Aminopeptidase AMPS; me 22.6 1.1E+02 0.0039 29.7 5.6 51 51-101 7-61 (418)
128 1d2f_A MALY protein; aminotran 22.3 4.8E+02 0.016 24.3 10.6 53 68-123 109-168 (390)
129 1uuf_A YAHK, zinc-type alcohol 22.3 1.7E+02 0.0057 27.8 6.8 76 46-125 168-246 (369)
130 2zbc_A 83AA long hypothetical 22.3 1.4E+02 0.0049 20.6 5.0 47 465-526 15-61 (83)
131 3qwb_A Probable quinone oxidor 21.9 4.2E+02 0.015 24.3 9.6 57 65-125 144-201 (334)
132 3nra_A Aspartate aminotransfer 21.7 5E+02 0.017 24.3 14.9 23 207-229 258-280 (407)
133 1vjk_A Molybdopterin convertin 21.4 1.3E+02 0.0044 22.1 4.6 46 18-78 35-94 (98)
134 2e7j_A SEP-tRNA:Cys-tRNA synth 21.1 3.5E+02 0.012 25.0 9.0 44 68-114 91-140 (371)
135 1toa_A Tromp-1, protein (perip 21.0 2.1E+02 0.0071 26.4 7.0 84 50-135 174-264 (313)
136 2jwk_A Protein TOLR; periplasm 20.6 1.4E+02 0.0047 20.2 4.4 30 24-53 34-63 (74)
137 1o58_A O-acetylserine sulfhydr 20.3 4.8E+02 0.017 23.6 10.3 47 80-126 74-120 (303)
138 4b7c_A Probable oxidoreductase 20.3 2.9E+02 0.0099 25.5 8.1 59 63-124 143-202 (336)
139 3uko_A Alcohol dehydrogenase c 20.3 2.7E+02 0.0094 26.3 8.0 78 44-125 164-246 (378)
140 3a2b_A Serine palmitoyltransfe 20.1 4.2E+02 0.014 24.8 9.5 54 67-124 124-180 (398)
141 2o1e_A YCDH; alpha-beta protei 20.1 2.3E+02 0.0077 26.2 7.0 64 72-135 191-257 (312)
142 3kax_A Aminotransferase, class 20.0 4.7E+02 0.016 24.2 9.7 53 67-123 103-162 (383)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=9.9e-81 Score=656.55 Aligned_cols=511 Identities=24% Similarity=0.363 Sum_probs=401.7
Q ss_pred cccccccccCHHHHHHHhhhhCCCceeeeeCC--------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH
Q 008342 12 KISANYTALTPLWFINRAATLHPTRKSVVYGS--------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83 (569)
Q Consensus 12 ~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~ 83 (569)
.++..++++|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 44566778999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh
Q 008342 84 YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 84 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (569)
++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... ....++.++..
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------ 156 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE------ 156 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS------
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC------
Confidence 9999999999999999999999999999999999999999998776665543322 23445554432
Q ss_pred hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcC
Q 008342 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTL 243 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~ 243 (569)
...+.+++..............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+
T Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~ 228 (549)
T 3g7s_A 157 --------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCM 228 (549)
T ss_dssp --------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCS
T ss_pred --------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeC
Confidence 134555555444332222223348999999999999999999999999999999888899999999999999
Q ss_pred CccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC--CCCcccceeeeecCCC
Q 008342 244 PMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT--ILPLTNVVNVNTAGAP 321 (569)
Q Consensus 244 p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--~~~l~~l~~~~~~g~~ 321 (569)
|++|.+++...+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+...... .. ++++|.+++||++
T Consensus 229 p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~ 307 (549)
T 3g7s_A 229 PMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWP 307 (549)
T ss_dssp CTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSC
T ss_pred cHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCcc
Confidence 99999999887777788888888888999999999999999999999999999987643222 33 7899999999999
Q ss_pred CCHHHHHHhhh-----cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCc
Q 008342 322 PPPSLLFAMSQ-----KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQ 393 (569)
Q Consensus 322 l~~~~~~~~~~-----~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (569)
+++++.+++.+ ++ +++++.||+||++++++.+.. .......++|.|++++ +++|+|+++++
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~ 376 (549)
T 3g7s_A 308 VAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----------LRLDKSTTQGVPMSDI-ELKVISLEDGR 376 (549)
T ss_dssp CCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----------GGGGGTTSCCEECTTC-EEEEECSSSCC
T ss_pred CCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc----------cccCcCCCccccCCCC-EEEEEeCCCCc
Confidence 99999999874 35 899999999999977665431 1123457899999999 69999977899
Q ss_pred ccCCCCCceEEEEEecCcccccccCCcchhhhhh---cCC--eeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 394 PVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF---ANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 394 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+++.| +.|||+|+|++++.|||++++.+.+.| .+| ||+|||+|++++||+++++||.||+||++|++|+|.+|
T Consensus 377 ~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 454 (549)
T 3g7s_A 377 ELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454 (549)
T ss_dssp EECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHH
T ss_pred CCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHH
Confidence 99988 789999999999999999999999998 677 99999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|++|.+||.|.+++|++.+++..|+.+++++++.++... ....++|+++|+++|+.|++|..+.+++ ||+|++||+
T Consensus 455 E~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 455 EALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG---KVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531 (549)
T ss_dssp HHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTT---SCCHHHHHHHHHTTCC-----CCCCEEEECC-------
T ss_pred HHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccC---cCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCE
Confidence 999999999999999999999889999999998876321 1156889999999999999999988777 999999999
Q ss_pred cHHHHHHHHHhcCC
Q 008342 548 QKHLLRAKAKEMGP 561 (569)
Q Consensus 548 ~r~~l~~~~~~~~~ 561 (569)
+|++|++++.+..-
T Consensus 532 ~R~~L~~~~~~~~~ 545 (549)
T 3g7s_A 532 LRRLLREKEAEGHH 545 (549)
T ss_dssp --------------
T ss_pred eHHHHHHHhhcccc
Confidence 99999998876543
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=5.7e-80 Score=648.85 Aligned_cols=504 Identities=24% Similarity=0.371 Sum_probs=433.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
++|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 589999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|+++.++.+++.+++++++++++|++......+........ ..++.++... .+...++
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~ 160 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP-----------DGCLHFS 160 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------TTCEETH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------CCccCHH
Confidence 9999999999999999999999999999988777766544332 2344444321 1223455
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhCCCCCcEEEEcCCccchhhHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
++........ ......++++++|+|||||||.||+|.+||+++......... .+++.++|++++.+|++|.+++.
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 5544332221 223457789999999999999999999999999887765543 35688999999999999999986
Q ss_pred HH-HHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 253 YT-WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 253 ~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
.. +..+..|+++++.+.+++..+++.++++++|++.++|+++..+++........ ++++|.+++||+++++++.++++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCHHHHHHHH
Confidence 54 45556677888878899999999999999999999999999999886655444 89999999999999999999998
Q ss_pred h-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 Q-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+ + ++++++.||+||++++++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+++|
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g 389 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRG 389 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEES
T ss_pred HHCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeC
Confidence 4 4 8999999999999977665532111 01112347899999999 6999998889999988 789999999
Q ss_pred CcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.||+++++.+.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 390 ~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 390 DQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469 (536)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred cccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeec
Confidence 999999999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
+..|+.++++++..++... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++++.+
T Consensus 470 ~~~g~~~~a~vv~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAGEVPVAFVVKSEKSQA-----TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTEEEEEEEEEECTTCCC-----CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCCceeEEEEEecCCCCC-----CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 9889999999998876544 56889999999999999999998877 99999999999999987754
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.5e-80 Score=645.60 Aligned_cols=503 Identities=29% Similarity=0.402 Sum_probs=431.3
Q ss_pred cccccccCHHHHHHHhhhhCCCceeeeeCCe--eeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 14 SANYTALTPLWFINRAATLHPTRKSVVYGSK--HYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 14 ~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
......+|+.++|+++++++|+++|+++.++ ++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 4456688999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|++++|+++.++.+++.+++++++++++|++......+........ ....++.+..
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------- 147 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG--------------- 147 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE---------------
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC---------------
Confidence 999999999999999999999999999999999887766655433222 1111222111
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
...+.+.+....... ......++++++|+|||||||.||+|++||+++..........+++.++|++++.+|++|.+++
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~ 226 (517)
T 3r44_A 148 ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226 (517)
T ss_dssp HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHH
T ss_pred cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH
Confidence 123444443332222 2234577899999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 252 SYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
...+..++.|+++++.+.+++..+++.++++++|++.++|+++..|.+........ ++++|.+++||+++++++.+++.
T Consensus 227 ~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~~ 305 (517)
T 3r44_A 227 TTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIYA 305 (517)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHHH
Confidence 88777777888888888899999999999999999999999999998765433333 78999999999999999999999
Q ss_pred hcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 332 QKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 332 ~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
+.++++++.||+||+++.++.+... ......+++|.|.+++ +++++|++ +.+++.+ .|||+++|++
T Consensus 306 ~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~~ 371 (517)
T 3r44_A 306 AKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSDI 371 (517)
T ss_dssp HTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEETT
T ss_pred hcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCcc
Confidence 7799999999999998876654321 1123347899999999 69999976 8888765 6999999999
Q ss_pred ccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 412 VMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..
T Consensus 372 v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~ 451 (517)
T 3r44_A 372 LLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKW 451 (517)
T ss_dssp SCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred hhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
|+.+.+++ +.++... ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 452 g~~~~a~v-~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 452 GEIAAAIV-VADQNEV-----SEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEEEEEEE-EECTTTC-----CHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred CceEEEEE-ECCCCCC-----CHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 88888888 4444333 45789999999999999999999877 9999999999999999997654
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2.1e-80 Score=652.42 Aligned_cols=513 Identities=32% Similarity=0.502 Sum_probs=397.3
Q ss_pred ccccCHHHHHHHhhhhCCCceeeee----CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVY----GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
..++|+.++|+++++++|+++|+++ .++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 3467999999999999999999994 458999999999999999999999999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+|++++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++... .+.
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~ 157 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGY 157 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------ccc
Confidence 99999999999999999999999999999999887665544332222 2344555544321 122
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHh--HhHhCCCCCcEEEEcCCccchhh
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG--ALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
..|++++...... ....++++++|+|||||||.||+|.+||+++....... ...++++++|++++.+|++|.++
T Consensus 158 ~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 158 LAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp EEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH
T ss_pred ccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH
Confidence 3455655433221 23456899999999999999999999999998776552 34567889999999999999999
Q ss_pred HHHHHHHHHhcceEEEecc-CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 251 WSYTWSLAALCGTSICLRQ-VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
+...+.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.++
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~ 312 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIAR 312 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHH
Confidence 9777777788888887753 69999999999999999999999999998764332233 789999999999999999999
Q ss_pred hhhcCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 330 MSQKGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 330 ~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+..+|+++++.||+||++++++.+.....+.............++|.|++++ +++|+|++ +++++.++++.|||+++|
T Consensus 313 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g 390 (541)
T 1v25_A 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKG 390 (541)
T ss_dssp HHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEES
T ss_pred HHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeC
Confidence 9667999999999999987766554332222222222223457899999999 69999976 888886444689999999
Q ss_pred CcccccccCCcchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 410 SCVMKGYLKNPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
++++.|||++++.+.+.|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 391 ~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 470 (541)
T 1v25_A 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 470 (541)
T ss_dssp TTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEEC
T ss_pred cchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecC
Confidence 9999999999999999996 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+..++.+++++++. +... ..+++.+++++ +|+.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 471 ~~~~~~~~a~vv~~-~~~~-----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 471 PKWQERPLAVVVPR-GEKP-----TPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSSSEEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred CCcCceEEEEEEEC-CCCC-----CHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 98899999998876 2222 45778999999 899999999998877 999999999999999987543
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.8e-78 Score=641.11 Aligned_cols=505 Identities=20% Similarity=0.282 Sum_probs=411.3
Q ss_pred cccCHH-HHHHHhhhhCCCceeeeeC-----CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhh
Q 008342 18 TALTPL-WFINRAATLHPTRKSVVYG-----SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 18 ~~~~l~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 91 (569)
...++. ++|+++|+++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~ 132 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLH 132 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 455666 9999999999999999972 3789999999999999999999999999999999999999999999999
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccch--HHHHHHHHHHhhhcCCCCCc-CeEEEecCCCcchhhhHHhh
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFF--SLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYAL 168 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~ 168 (569)
++|++++|+++.++.+++.+++++++++++|++.+.. ..+......++ .. ..++.++...
T Consensus 133 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 195 (580)
T 3etc_A 133 KLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV---------- 195 (580)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------
T ss_pred hCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------
Confidence 9999999999999999999999999999999988764 55555555444 22 4455554331
Q ss_pred hcchhhHHhhhhcCCCCCCCC---CCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCc
Q 008342 169 ARGAIEYEKFLETGDPEFAWK---PPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPM 245 (569)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 245 (569)
..++..+.+.+.......... ....++++++|+|||||||.||+|.++|.+++.........+++.+++++++..|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (580)
T 3etc_A 196 LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADS 275 (580)
T ss_dssp CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCT
T ss_pred ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCCh
Confidence 123456666665544433221 23578899999999999999999999999988877766666788999999999999
Q ss_pred cchhhHHHHHH-HHHhcceEEEe--ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCC
Q 008342 246 FHGNGWSYTWS-LAALCGTSICL--RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPP 322 (569)
Q Consensus 246 ~~~~g~~~~~~-~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l 322 (569)
+|..+.+..+. .+..|+++++. ..+++..+++.|+++++|+++++|++++.|.+... .... +++||.+++||+++
T Consensus 276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l 353 (580)
T 3etc_A 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPL 353 (580)
T ss_dssp TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCC
Confidence 99888775444 44555555555 46899999999999999999999999999988632 2233 78999999999999
Q ss_pred CHHHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCc
Q 008342 323 PPSLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKT 401 (569)
Q Consensus 323 ~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~ 401 (569)
++++.+++.+ +|+++++.||+||++..++.+... ....+++|.|++++ +++|+|++ +++++.| +
T Consensus 354 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~ 418 (580)
T 3etc_A 354 NPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--E 418 (580)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--C
T ss_pred CHHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--C
Confidence 9999999985 499999999999998665543211 12347899999999 69999987 9999988 7
Q ss_pred eEEEEEec-----CcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCC
Q 008342 402 IGEIVMRG-----SCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHP 476 (569)
Q Consensus 402 ~Gel~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (569)
.|||+++| +.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||
T Consensus 419 ~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p 498 (580)
T 3etc_A 419 EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHP 498 (580)
T ss_dssp CEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTST
T ss_pred ceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 89999997 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHH
Q 008342 477 LVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAK 555 (569)
Q Consensus 477 ~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (569)
.|.+|+|++.+++..|+.+.++|++.++.... +...++|++++++.|+.|++|..+.+++ ||+|++||++|++|+++
T Consensus 499 ~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~ 576 (580)
T 3etc_A 499 AVLECAITGVPDPVRGQVIKATIVLTKDYTPS--DSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576 (580)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECTTCCCC--HHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------------
T ss_pred CeeeEEEEeeeccCCCcEEEEEEEECCCCCCC--HHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhH
Confidence 99999999999999999999999988775321 2266899999999999999999999877 99999999999999998
Q ss_pred HHh
Q 008342 556 AKE 558 (569)
Q Consensus 556 ~~~ 558 (569)
+.+
T Consensus 577 ~~~ 579 (580)
T 3etc_A 577 DQS 579 (580)
T ss_dssp ---
T ss_pred hhc
Confidence 765
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.8e-79 Score=640.67 Aligned_cols=500 Identities=22% Similarity=0.334 Sum_probs=424.0
Q ss_pred ccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 17 YTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 17 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
+.+.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG 171 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (569)
++|+++.++.+++.+++++++++++|++++.. .........++ ....++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAE------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCT-------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCcc-------------
Confidence 99999999999999999999999999987642 12222222222 233444433321
Q ss_pred hhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhH
Q 008342 172 AIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGW 251 (569)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (569)
.+.++...... ........++++++++|||||||.||+|.++|+++..........+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 12222221111 111123567899999999999999999999999999998888888899999999999999999998
Q ss_pred HH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 252 SY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
.. .+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 64 666777888888888899999999999999999999999999998764433333 899999999999999999999
Q ss_pred hhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEe
Q 008342 330 MSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMR 408 (569)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~ 408 (569)
+.+ +++++++.||+||++..+.. . . ........++|.|+++..+++|+|++ +++++.| +.|||+++
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~-~-~--------~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTR-L-D--------DPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECC-T-T--------SCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccC-C-C--------CcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 984 59999999999996422211 1 0 01123347899999765469999976 8999988 78999999
Q ss_pred cCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 409 GSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
|++++.|||++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+||.|.+++|++.+
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 464 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecc
Confidence 9999999999999999999 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhc-CCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 488 DERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAK-MPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++..|+.+++++++... .. ..++|+++++++ |+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 465 ~~~~g~~~~a~vv~~~~-~~-----~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 465 DQFLGERSCVFIIPRDE-AP-----KAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp ETTTEEEEEEEEEESSS-CC-----CHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred ccccCceEEEEEEECCC-CC-----CHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 98889999999987742 22 457899999998 99999999999877 999999999999999998764
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.8e-80 Score=651.49 Aligned_cols=523 Identities=21% Similarity=0.281 Sum_probs=345.9
Q ss_pred cccCCccccccccccccCHHHHHHHhhhhCCCceeee---e--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 008342 4 VKDIDDLPKISANYTALTPLWFINRAATLHPTRKSVV---Y--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 78 (569)
...+-.-+.+....++.|+.++|.++++++|+++|++ + .++++||+||.++++++|++|.++|+++||+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 83 (550)
T 3rix_A 4 AKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSE 83 (550)
T ss_dssp GGGSEECCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECS
T ss_pred ccceeeCCCCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcC
Confidence 3444455566777888999999999999999999976 3 3589999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCC
Q 008342 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES 158 (569)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 158 (569)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+....+.......+ ....++.++...
T Consensus 84 n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 156 (550)
T 3rix_A 84 NSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKT 156 (550)
T ss_dssp SCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSS
T ss_pred CcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEcCCc
Confidence 9999999999999999999999999999999999999999999999988777776665554 345566655432
Q ss_pred cchhhhHHhhhcchhhHHhhhhcCCCC------CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--
Q 008342 159 CDSKQLEYALARGAIEYEKFLETGDPE------FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-- 230 (569)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~-- 230 (569)
.. .+...+.+++...... ........++++++|+|||||||.||+|.++|+++..........
T Consensus 157 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~ 227 (550)
T 3rix_A 157 DY---------QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF 227 (550)
T ss_dssp CB---------TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT
T ss_pred cc---------cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhc
Confidence 11 1223444544332221 111122345789999999999999999999999998887666554
Q ss_pred -hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCc
Q 008342 231 -WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 309 (569)
Q Consensus 231 -~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 309 (569)
+++.++|++++.+|++|.+|+...+..++.|+++++...+++..+++.|+++++|++.++|+++..+++........ +
T Consensus 228 ~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l 306 (550)
T 3rix_A 228 GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-L 306 (550)
T ss_dssp SCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-C
T ss_pred cccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-c
Confidence 46789999999999999999988888888899998888899999999999999999999999999999876555444 8
Q ss_pred ccceeeeecCCCCCHHHHHHhhh-cCCe-EecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceee
Q 008342 310 TNVVNVNTAGAPPPPSLLFAMSQ-KGFR-ITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVI 387 (569)
Q Consensus 310 ~~l~~~~~~g~~l~~~~~~~~~~-~~~~-i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~ 387 (569)
+++|.+++||+++++++.+++.+ ++.. +++.||+||+++.++.+... ....+++|.|++++ +++|+
T Consensus 307 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~ 374 (550)
T 3rix_A 307 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVV 374 (550)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEE
T ss_pred ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEE
Confidence 99999999999999999999985 4664 99999999999766654321 12347899999999 69999
Q ss_pred eCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechH
Q 008342 388 DARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466 (569)
Q Consensus 388 d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (569)
|++++++++.| +.|||+++|++++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.
T Consensus 375 d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (550)
T 3rix_A 375 DLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPA 452 (550)
T ss_dssp CTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----------------
T ss_pred eCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHH
Confidence 98889999988 789999999999999999999999999 689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCC-ceEEecc-CCCCCC
Q 008342 467 EVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVP-KSVVFAA-LPKSAT 544 (569)
Q Consensus 467 ~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p-~~i~~~~-lP~t~~ 544 (569)
+||++|.+||.|.+++|++.+++..|+.+.++|++.++... ..+++.++++++++.++.| ..+++++ ||+|++
T Consensus 453 eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~ 527 (550)
T 3rix_A 453 ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM-----TEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLT 527 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC-----CHHHHHHHHHHhcccccccCCceEEEeecCCCCC
Confidence 99999999999999999999999989999999988776543 5678999999999988655 4577666 999999
Q ss_pred CcccHHHHHHHHHhcCCc
Q 008342 545 GKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 545 GKi~r~~l~~~~~~~~~~ 562 (569)
||++|++|++++.+....
T Consensus 528 GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 528 GKLDARKIREILIKAKKG 545 (550)
T ss_dssp ------------------
T ss_pred cceeHHHHHHHHHhhccc
Confidence 999999999999775543
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.5e-78 Score=632.58 Aligned_cols=491 Identities=22% Similarity=0.302 Sum_probs=421.3
Q ss_pred HHHHHhhhhCCCceeee---eCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeec
Q 008342 24 WFINRAATLHPTRKSVV---YGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSI 100 (569)
Q Consensus 24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 100 (569)
++|+++++++|+++|+. +.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 456899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhhh
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFLE 180 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (569)
++.++.+++.+++++++++++|++.+....+........ ..+..++..... .+.....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-------------~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDGRG-------------SLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTSCS-------------HHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCccc-------------ccchhhh
Confidence 999999999999999999999999887665554443332 234444332110 1111111
Q ss_pred cCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHH-HHHHHH
Q 008342 181 TGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSY-TWSLAA 259 (569)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~ 259 (569)
... .........++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.+|+.. .+..++
T Consensus 142 ~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GAS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSC-SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCC-CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 111 111223456789999999999999999999999999999998888999999999999999999999754 445666
Q ss_pred hcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc-CCeEe
Q 008342 260 LCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-GFRIT 338 (569)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~ 338 (569)
.|+++++.+.+++..+++.++ ++|++.++|+++..+++........ ++++|.+++||+++++++.+++.+. +++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 788888888899999999998 8999999999999999887655554 8899999999999999999999855 99999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||++..+.... ......+++|.|++++ +++|+|++++++++.| +.|||+++|++++.||++
T Consensus 298 ~~YG~TE~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPY-----------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCS-----------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCC-----------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 9999999986543221 1112336899999999 6999998889999998 799999999999999999
Q ss_pred Ccchhhhhhc-CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 419 NPKANEEAFA-NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 419 ~~~~~~~~~~-~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
+++.+...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||+|.+++|++.+++..|+.+.+
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
+++..++... ..+++.++++++|+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 444 ~v~~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDKGATI-----DEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECTTCCC-----CHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCCCCCC-----CHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9998876544 55789999999999999999999877 999999999999999988654
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.2e-78 Score=636.35 Aligned_cols=504 Identities=20% Similarity=0.283 Sum_probs=428.8
Q ss_pred ccCHHH-HHHHhhhhCCCceeeee--CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 19 ALTPLW-FINRAATLHPTRKSVVY--GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 19 ~~~l~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+|+.+ ++.++++++ +++|+++ .++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 24 ~~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Ga 102 (548)
T 2d1s_A 24 SAGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGV 102 (548)
T ss_dssp CHHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTC
T ss_pred cCcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCC
Confidence 358999 898899999 9999998 468999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++.... .+...|
T Consensus 103 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~ 166 (548)
T 2d1s_A 103 GVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVDY---------RGYQCL 166 (548)
T ss_dssp EEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSCB---------TTBCBH
T ss_pred EEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCcccc---------cccccH
Confidence 99999999999999999999999999999987666555443332 23445555432110 112345
Q ss_pred HhhhhcCCCC-CCCCCCC-----CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCcc
Q 008342 176 EKFLETGDPE-FAWKPPE-----DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMF 246 (569)
Q Consensus 176 ~~~l~~~~~~-~~~~~~~-----~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~ 246 (569)
++++...... .+..... .++++++|+|||||||.||+|.+||+++.......... +++.++|++++.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 246 (548)
T 2d1s_A 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFH 246 (548)
T ss_dssp HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHH
Confidence 5555443211 1110001 23899999999999999999999999998888776665 6788999999999999
Q ss_pred chhhHHHHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHH
Q 008342 247 HGNGWSYTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 247 ~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~ 326 (569)
|.+|+...+...+.|+++++.+.+++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++
T Consensus 247 h~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~ 325 (548)
T 2d1s_A 247 HGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEV 325 (548)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHH
Confidence 9999877555555888888888899999999999999999999999999999875443334 889999999999999999
Q ss_pred HHHhhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEE
Q 008342 327 LFAMSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 327 ~~~~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
.+++.+ + ++++++.||+||+++.++.+... ....+++|.|++++ +++|+|++++++++.| +.||
T Consensus 326 ~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GE 391 (548)
T 2d1s_A 326 GEAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGE 391 (548)
T ss_dssp HHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEE
T ss_pred HHHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeE
Confidence 999985 4 78999999999998766543211 12347899999999 6999997779999988 7899
Q ss_pred EEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++|++++.|||++++.+.+.| .+|||+|||+|++++||++++.||.||+|+++|++|+|.+||++|.+||.|.+++|
T Consensus 392 l~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V 471 (548)
T 2d1s_A 392 VCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471 (548)
T ss_dssp EEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEE
T ss_pred EEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 99999999999999999999999 58999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCc-eEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPK-SVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.+++..|+.++++|++.++... ..++|+++|+++|+.|++|. .+.+++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 472 AGVPDPVAGELPGAVVVLESGKNM-----TEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EEEEETTTEEEEEEEEEECTTCCC-----CHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEEEcCCCCeeeEEEEEEcCCCCC-----CHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 999998889999999998766433 45789999999999999999 888777 999999999999999998754
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.2e-79 Score=643.01 Aligned_cols=499 Identities=26% Similarity=0.423 Sum_probs=337.4
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+.++|+.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|+++.++.+++.+++++++++++|++.+....+......+. ....++.+++.. ..+
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------------~~~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGS--------------GPF 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCC--------------SSC
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCC--------------cCh
Confidence 99999999999999999999999999999987665444332222 344555554421 122
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.+|+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222112222222345788999999999999999999999999999999888899999999999999999999999888
Q ss_pred HHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 256 SLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
..++.+|+.++...+++..+++.|+++++|++.++|+++..+++... ... ++++|.++.+|++ +..+++.+ +
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC--GGG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc--ccc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 88888888888888999999999999999999999999999998762 222 7899999999987 67777764 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||++++++.+.... ....+|.|++++ +++|+|++ +++++.| +.|||+++|++++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 899999999999987766543211 124589999999 69999987 8999988 7899999999999
Q ss_pred ccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEeccc--CceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCC
Q 008342 414 KGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRL--KDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERW 491 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 491 (569)
.||+++++.+...|.+|||+|||+|++++||++++.||. ||+||++|++|+|.+||++|.+||.|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 492 GESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
++.+++++++.++... ..++|+++++++|+.|++|..+.+++ ||+|++||++|++|++++.+....
T Consensus 439 ~~~~~a~v~~~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~ 505 (509)
T 3ivr_A 439 SEAIKAVCVCKPGESI-----AADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHH 505 (509)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCCCC-----CHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccc
Confidence 9999999988776443 56789999999999999999998777 999999999999999998876543
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.1e-79 Score=643.09 Aligned_cols=504 Identities=21% Similarity=0.330 Sum_probs=338.4
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.|.++|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhc
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALAR 170 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (569)
+++|+++.++.+++.+++++++++++|++.... ........... ....++.++.....
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------- 168 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQATD---------- 168 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTTS----------
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCccc----------
Confidence 999999999999999999999999999987653 22222222211 33445555433111
Q ss_pred chhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhh
Q 008342 171 GAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (569)
..+.++...............++++++|+|||||||.||+|.++|+++..........+++.++|++++.+|++|.++
T Consensus 169 --~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 169 --FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp --EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 123333333222222223456789999999999999999999999999999999888999999999999999999998
Q ss_pred HHH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHH
Q 008342 251 WSY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLF 328 (569)
Q Consensus 251 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~ 328 (569)
+.. .+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.+
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~ 325 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLAR 325 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHT
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHH
Confidence 864 566677788888888899999999999999999999999999998876554444 88999999999999999999
Q ss_pred Hhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEEEE
Q 008342 329 AMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGEIV 406 (569)
Q Consensus 329 ~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 406 (569)
++.+. ++++++.||+||++..++.+. ........++|.|+ ++. +++|+|++ +++++.| +.|||+
T Consensus 326 ~~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~ 391 (544)
T 3o83_A 326 QVPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLA 391 (544)
T ss_dssp HHHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEE
T ss_pred HHHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEE
Confidence 99855 999999999999874333221 11223447899996 677 69999965 9999988 899999
Q ss_pred EecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 407 MRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 407 v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
++|++++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++
T Consensus 392 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~ 471 (544)
T 3o83_A 392 TRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471 (544)
T ss_dssp EECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------------------------
T ss_pred EecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEe
Confidence 999999999999999999999 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
.+++..|+.++++++..+.. . ...++++++++ .|+.|++|..+.+++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~g~~~~a~vv~~~~~-~-----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 472 IVDEQFGEKSCAFIVSRNPE-L-----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ccCCCCCceEEEEEEeCCCC-C-----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 99999899999999876532 1 45678888988 799999999999877 999999999999999988754
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.6e-77 Score=624.17 Aligned_cols=483 Identities=25% Similarity=0.359 Sum_probs=408.3
Q ss_pred cCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 20 LTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
+|+.++|+++++++|+++|+.+. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEE--cccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIV--DQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+|+++.++.+++.+++++++++++|+ +.+....+. .... ...++. +
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~--------~~~~~~---------------------~ 129 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS--------GARIIF---------------------L 129 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC--------CCEEEE---------------------G
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc--------cceeEE---------------------e
Confidence 99999999999999999999999999 655433220 1111 111221 2
Q ss_pred HhhhhcCC----CCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCC--CCCcEEEEcCCccchh
Q 008342 176 EKFLETGD----PEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGM--NEGAVFLWTLPMFHGN 249 (569)
Q Consensus 176 ~~~l~~~~----~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~ 249 (569)
++++.... ..........++++++|+|||||||.||+|.++|+++..........+++ .++|++++.+|++|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 22222110 00111123467899999999999999999999999999888887777888 8899999999999999
Q ss_pred hHH-HHHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeeecCCCCCHHH
Q 008342 250 GWS-YTWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 250 g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~~g~~l~~~~ 326 (569)
|+. ..+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.... .... ++++|.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 984 455666778888888889999999999999999999999999999876522 2223 789999999999999999
Q ss_pred HHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCC--cccCCCCCceE
Q 008342 327 LFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTN--QPVPADGKTIG 403 (569)
Q Consensus 327 ~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~--~~~~~~~~~~G 403 (569)
.+++.+. ++++++.||+||++. +.... ....++.|.|.+++ +++++|++++ ++++.| +.|
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~--~~~~~------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~G 351 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAMN--SLYMR------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEG 351 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTEE--EEEEE------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCE
T ss_pred HHHHHHhcCcceeeeeccccccc--ccccc------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccc
Confidence 9999854 899999999999932 22111 11236789999999 6999997632 788877 789
Q ss_pred EEEEe-cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeE
Q 008342 404 EIVMR-GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482 (569)
Q Consensus 404 el~v~-~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 482 (569)
||+++ |+.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+|+
T Consensus 352 El~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
|++.+++..|+.++++|++.++... ..++|.++|++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGETL-----SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTCCC-----CHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCcCc-----CHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999889999999998876433 45789999998 999999999999877 9999999999999998763
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.5e-77 Score=627.60 Aligned_cols=504 Identities=21% Similarity=0.321 Sum_probs=421.9
Q ss_pred CHHHHHHHhhhh-----CCCceeeeeC-----CeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHH
Q 008342 21 TPLWFINRAATL-----HPTRKSVVYG-----SKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 21 ~l~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
++.++|+++++. +|+++|+++. ++++||+||.++++++|++|.+. |+++||+|+++++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 357899999998 9999999973 37899999999999999999998 999999999999999999999999
Q ss_pred hhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 90 APMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
|+++|++++|+++.++.+++.+++++++++++|++.+....+......++ ....++.+++...
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 181 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC---------- 181 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC----------
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc----------
Confidence 99999999999999999999999999999999999887665554333222 2345555554211
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHH--HHHHhHhHhCCCCCcEEEEcCCccc
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYL--MSLNGALIWGMNEGAVFLWTLPMFH 247 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~--~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (569)
.+...+++++........ .....++++++|+|||||||.||+|.++|+ ++. ..... ..+++.++|++++..|++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 182 DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 122345565554332221 123567899999999999999999999999 544 33333 5678899999999999999
Q ss_pred hhhHHH-HHHHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCH
Q 008342 248 GNGWSY-TWSLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324 (569)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~ 324 (569)
.+++.. .+.++..|+++++.. .+++..+++.|+++++|++.++|+++..|.+... .... ++++|.+++||+++++
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~-~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYK-FPHLQNCVTVGESLLP 336 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT-TTCC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc-cccc-cccceEEEEcCCcCCH
Confidence 999874 555666777777775 6899999999999999999999999999998632 2223 7899999999999999
Q ss_pred HHHHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceE
Q 008342 325 SLLFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIG 403 (569)
Q Consensus 325 ~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~G 403 (569)
++.+++.+ +++++++.||+||++..++..... ....+++|.|++++ +++|+|++ +++++.| +.|
T Consensus 337 ~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~~G 401 (570)
T 3c5e_A 337 ETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--TEG 401 (570)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--CCE
T ss_pred HHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--CCC
Confidence 99999985 599999999999998544332110 12347899999999 69999976 8999988 789
Q ss_pred EEEEe-----cCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCc
Q 008342 404 EIVMR-----GSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLV 478 (569)
Q Consensus 404 el~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v 478 (569)
||+++ |++++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|.|
T Consensus 402 El~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V 481 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAV 481 (570)
T ss_dssp EEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTE
T ss_pred eeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCc
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHH
Q 008342 479 LEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAK 557 (569)
Q Consensus 479 ~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (569)
.+++|++.+++..|+.++++|++.++....+.+...++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.
T Consensus 482 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 482 VETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHT
T ss_pred ceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHH
Confidence 999999999988889999999987654222223357889999999999999999999877 9999999999999999886
Q ss_pred hcCC
Q 008342 558 EMGP 561 (569)
Q Consensus 558 ~~~~ 561 (569)
+...
T Consensus 562 ~~s~ 565 (570)
T 3c5e_A 562 KMSG 565 (570)
T ss_dssp C---
T ss_pred hhhh
Confidence 5543
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=9.7e-77 Score=621.47 Aligned_cols=497 Identities=18% Similarity=0.206 Sum_probs=418.9
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
||+.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKFL 179 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (569)
+++.++.+++.+++++++++++|++...... . ....++.. ..+..+.
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--------------~-~~~~~~~~------------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT--------------D-LPVRIVSE------------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS--------------C-CSSEEEET------------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc--------------c-cccceech------------------hhhhhhc
Confidence 9999999999999999999999998543210 0 00111110 0111111
Q ss_pred hcC-CCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 180 ETG-DPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
... ...........++++++|+|||||||.||+|.+||+++.+........+++.++|++++.+|++|..++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 111 1111122335678999999999999999999999999999998888889999999999999999999998888888
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
+.|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+++.+ +
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 88888888865 68999999999999999999999999998876555555 889999999999999999999985 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||+++.++.+..... ........++|.|.+++ ++.|+|++ +++++.| +.|||+++|++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTEE------VLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCHH------HHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEeccc------cccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 8999999999999987765432211 11122346789999999 69999976 9999988 7899999999999
Q ss_pred ccccCCcchhhhhhc----CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 414 KGYLKNPKANEEAFA----NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~----~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
.|||++++.+.+.|. +|||+|||+|++ +||++++.||.||+|+++|++|+|.+||++|.++|.|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999983 569999999999 699999999999999999999999999999999999999999999888
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
..++.+++++++.++... +.....++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.++...
T Consensus 436 ~~~~~~~a~vv~~~~~~~-~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHSFE-KEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp TEEEEEEEEEEECSCCCS-SHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred CCceEEEEEEecCCcccc-chhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 888889999988765432 222356789999999999999999999877 999999999999999999877543
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9.3e-77 Score=621.09 Aligned_cols=494 Identities=21% Similarity=0.258 Sum_probs=424.0
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKL-SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
||+.++|+++|+++|+++|+++.++++||+||.++++++|++|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999884 888999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++....... .. .. .....+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------~~-------~~---------------------~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------VG-------QQ---------------------IQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------CC-------CS---------------------SCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccchh------cc-------cc---------------------cceecHhhh
Confidence 999999999999999999999999975432100 00 00 011233344
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
+..............++++++|+|||||||.||+|.+||+++.....+....+++.++|++++.+|++|..++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 43332222222335678999999999999999999999999999998888889999999999999999999988877788
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-c-
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ-K- 333 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~-~- 333 (569)
..|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.++++|+++++++.+++.+ +
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 88888888765 68999999999999999999999999999876555444 889999999999999999999985 4
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||+++.++.+..... ........++|.|.+++ +++|+|++ +++++.| +.|||+++|++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITND------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHH------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEecccc------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 8999999999999987765542211 01112235699999999 69999987 9999988 7899999999999
Q ss_pred ccccCCcchhhhhhc--CC--eeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCC
Q 008342 414 KGYLKNPKANEEAFA--NG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDE 489 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~--~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 489 (569)
.|||++++.+.+.|. +| ||+|||+|+++ ||+++++||.||+|+++|++|+|.+||++|.+||.|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 999999999999983 44 79999999994 99999999999999999999999999999999999999999999988
Q ss_pred CCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 490 RWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
..++.+++++++.++... +.....++|+++++++||.|++|..+.+++ ||+|++||++|++|++.+....
T Consensus 435 ~~~~~~~a~vv~~~~~~~-~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHEFE-KEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp SSCCEEEEEEEECCCCCS-SHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred CCceEEEEEEEecccccc-chhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 888999999998876432 222356889999999999999999999877 9999999999999999988654
No 16
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.7e-76 Score=634.61 Aligned_cols=513 Identities=22% Similarity=0.302 Sum_probs=425.5
Q ss_pred CHHHHHHHhhhhCCCceeeee------CCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 21 TPLWFINRAATLHPTRKSVVY------GSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 21 ~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
++.++|+++++++|+++|+++ .++++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 477899999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhH
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF---------SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLE 165 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (569)
++++|+++.++.+++.+++++++++++|+++... ..+.++....+ .....+++.++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC---
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999987642 22333222110 002345666654321100
Q ss_pred HhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHH-HhHhHhCCCCCcEEEEcCC
Q 008342 166 YALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSL-NGALIWGMNEGAVFLWTLP 244 (569)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~-~~~~~~~~~~~d~~~~~~p 244 (569)
........|++++........ .....++++++|+|||||||.||||+++|++++.... .....++++++|++++..|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEHQ-PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCCC-CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -ccCCCceeHHHHHhhcCCCCC-ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 001123457777654332221 2234678999999999999999999999999877664 3455688999999999999
Q ss_pred ccchhhHH-HHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceeeee
Q 008342 245 MFHGNGWS-YTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNVNT 317 (569)
Q Consensus 245 ~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~~~ 317 (569)
++|.+|+. ..+.+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... .... +++||.+++
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~ 385 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGS 385 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEE
Confidence 99999984 45566777888887754 5899999999999999999999999999886532 2223 889999999
Q ss_pred cCCCCCHHHHHHhhh-cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCc
Q 008342 318 AGAPPPPSLLFAMSQ-KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQ 393 (569)
Q Consensus 318 ~g~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (569)
||+++++++.+++.+ +| +++++.||+||+++.++...... .....+++|.|++++ +++|+|++ ++
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CC
Confidence 999999999999984 46 89999999999997665543211 112347899999999 69999986 89
Q ss_pred ccCCCCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHH
Q 008342 394 PVPADGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEV 468 (569)
Q Consensus 394 ~~~~~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (569)
+++.| +.|||+++| |+++.|||++++.+...| .+|||+|||+|++++||+++|+||.||+||++|++|+|.||
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99887 899999999 789999999998887766 37999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcc
Q 008342 469 EKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKI 547 (569)
Q Consensus 469 E~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (569)
|++|.+||.|.+|+|++.+++..|+.++++|++.++... .+...++|+++|+++|+.|++|..+++++ ||+|++||+
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEP--SPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCC--CHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence 999999999999999999998889999999998876432 11256889999999999999999999877 999999999
Q ss_pred cHHHHHHHHHhc
Q 008342 548 QKHLLRAKAKEM 559 (569)
Q Consensus 548 ~r~~l~~~~~~~ 559 (569)
+|++|++++.+.
T Consensus 611 ~R~~L~~~~~~~ 622 (652)
T 1pg4_A 611 MRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHTC
T ss_pred hHHHHHHHHhCC
Confidence 999999999865
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3e-76 Score=632.86 Aligned_cols=517 Identities=21% Similarity=0.295 Sum_probs=422.1
Q ss_pred cCHHHHHHHhhhhCCCceeeee------CCeeeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 20 LTPLWFINRAATLHPTRKSVVY------GSKHYTWHQTYRRCRRFASALS-KLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~la~~L~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
.++.++|+++++++|+++|+++ ..+++||+||.+++.++|++|+ ++|+++||+|+++++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3578899999999999999998 3478999999999999999999 99999999999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhh
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS---------LAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQ 163 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (569)
+|++++|+++.++.+++.+++++++++++|+++.... .+.++...++ ...++++++........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP-------GVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT-------TCCEEEEECSSCCSSCC
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC-------CCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999876432 2222222111 23566666543210000
Q ss_pred hHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHH-hHhHhCCCCCcEEEEc
Q 008342 164 LEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLN-GALIWGMNEGAVFLWT 242 (569)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~-~~~~~~~~~~d~~~~~ 242 (569)
. .......|.+++.......+ ..+..++++++|+|||||||.||+|+++|.+++..... ....+++.++|++++.
T Consensus 235 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKTYYP-CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCSCCC-CCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCCCCC-ccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01123456776654332221 22346789999999999999999999999998766643 4456889999999999
Q ss_pred CCccchhhHH-HHHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC--CCCCCcccceee
Q 008342 243 LPMFHGNGWS-YTWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE--DTILPLTNVVNV 315 (569)
Q Consensus 243 ~p~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~--~~~~~l~~l~~~ 315 (569)
.|++|..|+. ..+.+++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... .... +++||.+
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i 389 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCL 389 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEE
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEE
Confidence 9999999984 45566677888888753 5889999999999999999999999999887542 2223 8999999
Q ss_pred eecCCCCCHHHHHHhhh-cC---CeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCC
Q 008342 316 NTAGAPPPPSLLFAMSQ-KG---FRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDART 391 (569)
Q Consensus 316 ~~~g~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~ 391 (569)
+++|+++++++.+++.+ +| +++++.||+||+++.++.+.... ......+++|.|++++ +++|+|+++
T Consensus 390 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~ 460 (663)
T 1ry2_A 390 GSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNT 460 (663)
T ss_dssp EECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSS
T ss_pred EEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCC
Confidence 99999999999999985 46 89999999999987666543210 0112347899999999 699999866
Q ss_pred CcccCC-CCCceEEEEEec--CcccccccCCcchhhhhh---cCCeeecCceeEEcCCCeEEEecccCceEEeCceeech
Q 008342 392 NQPVPA-DGKTIGEIVMRG--SCVMKGYLKNPKANEEAF---ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISS 465 (569)
Q Consensus 392 ~~~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~ 465 (569)
|++++. | +.|||+++| |+++.|||++++.+.+.| .+|||+|||+|++++||+++|+||.||+||++|++|+|
T Consensus 461 g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~ 538 (663)
T 1ry2_A 461 GEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 538 (663)
T ss_dssp TTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred CCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCH
Confidence 999987 5 789999999 589999999998887776 37999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc---h--hhhhhHHHHHHHHHHhcCCCCcCCceEEecc-C
Q 008342 466 VEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD---E--LDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-L 539 (569)
Q Consensus 466 ~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---~--~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-l 539 (569)
.+||++|.+||.|.+++|++.+++..|+.++++|++.++.. . .......++|+++|+++|+.|++|..+++++ |
T Consensus 539 ~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~l 618 (663)
T 1ry2_A 539 AEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDL 618 (663)
T ss_dssp HHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCC
T ss_pred HHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCC
Confidence 99999999999999999999999888999999999887643 1 0001257899999999999999999999887 9
Q ss_pred CCCCCCcccHHHHHHHHHhc
Q 008342 540 PKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 540 P~t~~GKi~r~~l~~~~~~~ 559 (569)
|+|++||++|++|++++.++
T Consensus 619 P~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 619 PKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CBCTTSCBCHHHHHHSCC--
T ss_pred CCCCccCchHHHHHHHHcCC
Confidence 99999999999999987654
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-75 Score=623.83 Aligned_cols=501 Identities=23% Similarity=0.342 Sum_probs=425.3
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
.-|.++|+.++|++++. |+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34678999999999997 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFF-----SLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALA 169 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (569)
++++|+++.++.+++.++++++++++++++.... ........... ....+..+.+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------- 162 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSGE---------- 162 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCST----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeecccccc----------
Confidence 9999999999999999999999999999987653 22232222222 2333444433221
Q ss_pred cchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchh
Q 008342 170 RGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGN 249 (569)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (569)
..+.+......... ...+..++++++|+|||||||.||+|+++|+++.+........+++.++|++++.+|++|.+
T Consensus 163 ---~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 163 ---HNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp ---TBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred ---cchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 12333333222221 22345678999999999999999999999999999999888899999999999999999999
Q ss_pred hHHH--HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCC-CCCcccceeeeecCCCCCHHH
Q 008342 250 GWSY--TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDT-ILPLTNVVNVNTAGAPPPPSL 326 (569)
Q Consensus 250 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-~~~l~~l~~~~~~g~~l~~~~ 326 (569)
++.. .+.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++...... ...++++|.+++||+++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8863 6777788998888888899999999999999999999999999887533221 112889999999999999999
Q ss_pred HHHhhh-cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCcee-eccCCceeeeCCCCcccCCCCCceEE
Q 008342 327 LFAMSQ-KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRT-ICLDGLDVIDARTNQPVPADGKTIGE 404 (569)
Q Consensus 327 ~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (569)
.+++.+ +++++++.||+||++..++.+. ........++|.|+ ++. ++.|+|++ ++++|.| +.||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 999985 4999999999999875433221 11223346789997 555 69999976 8999998 8999
Q ss_pred EEEecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 405 IVMRGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 405 l~v~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
|+++|++++.||+++++.+.+.| .++||+|||+|++++||.++++||.||+||++|++|+|.+||++|.+||.|.+++|
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred EEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHh-cCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhc
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRA-KMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEM 559 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (569)
++.+++..|+.++++++..+.. ...++++++++ .||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~-------~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPL-------RAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCC-------CHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCC-------CHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999888889999999987643 34778999998 699999999999877 999999999999999988653
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.6e-76 Score=619.39 Aligned_cols=479 Identities=18% Similarity=0.259 Sum_probs=406.7
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..++.++|+++++++|+++|+++.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++.+....... .. ....+..+.... +
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~-------------------~ 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDT-------------------I 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCST-------------------T
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchh-------------------h
Confidence 99999999999999999999999999875432211 10 112233222210 0
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
... .......+..++++++|+|||||||.||+|++||+++.+........+++.++|++++..|++|..++...+.++
T Consensus 168 ~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 KIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp TTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred ccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 111112234678999999999999999999999999998888877788999999999999999999988777777
Q ss_pred HhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCC
Q 008342 259 ALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGF 335 (569)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~ 335 (569)
+.|+++++.+. +++..+++.++++++|++.++|+++..+... . ++++|.+++||+++++++.+++.+. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 88888887755 6899999999999999999999998877532 2 6889999999999999999999864 8
Q ss_pred eEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccccc
Q 008342 336 RITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKG 415 (569)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~g 415 (569)
++++.||+||++++++.+...... .....++|.|++++ +++|+|++ +++++.| +.|||+++|++++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998776654322211 11236899999999 69999976 8999988 899999999999999
Q ss_pred ccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecC
Q 008342 416 YLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPD 488 (569)
Q Consensus 416 y~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 488 (569)
||++++.+.+.|. ++||+|||+|++++||+++++||.||+|+++|++|+|.+||++|.+||.|.+++|++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999999999884 249999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 489 ERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
+..++.++++++..... ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 466 ~~~~~~~~a~vv~~~~~-------~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 466 HQEQPYLCAYFVSEKHI-------PLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSCEEEEEEEEESSCC-------CHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCCeEEEEEEEeCCCC-------CHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88889999999876432 34789999999999999999999877 999999999999998653
No 20
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.5e-75 Score=613.27 Aligned_cols=500 Identities=25% Similarity=0.328 Sum_probs=406.9
Q ss_pred ccC-HHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 19 ALT-PLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 19 ~~~-l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
.++ +.++|+++++ +|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence 444 8899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCc-CeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKT-PHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
+|+++.++.+++.+++++++++++|++.+....+.......+ .. ..++.++..... ......++
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~ 165 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFE 165 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHH
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchh
Confidence 999999999999999999999999999887655544332211 12 344444432110 00112455
Q ss_pred hhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHH-HHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 177 KFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGA-YLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
+++....... ......++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|.+|+...+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 166 ELIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp HHHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHT
T ss_pred hhhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHH
Confidence 5554322221 122356789999999999999999999999998 56555555567889999999999999999987644
Q ss_pred -HHHHhcceEEEe-ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 256 -SLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 256 -~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
..+..|+++++. ..+++..+++.++++++|++.++|+++..+++........ ..++|.+++||+++++++.+++.+
T Consensus 245 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~ 323 (529)
T 2v7b_A 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAH 323 (529)
T ss_dssp HHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 455667766666 5689999999999999999999999999998765443332 238999999999999999999985
Q ss_pred cCCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcc
Q 008342 333 KGFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCV 412 (569)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~ 412 (569)
+++++++.||+||++++++.+.... ...+++|.|++++ +++|+|++ +++++.| +.|||+++|+++
T Consensus 324 ~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~ 388 (529)
T 2v7b_A 324 FGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSA 388 (529)
T ss_dssp HSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTC
T ss_pred hCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCc
Confidence 4999999999999976554432111 2337899999999 69999975 8999988 899999999999
Q ss_pred cccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCC
Q 008342 413 MKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWG 492 (569)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g 492 (569)
+.||+++++.+...|.+|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.+||+|.+++|++. ++..+
T Consensus 389 ~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 389 AVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred ccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 66667
Q ss_pred ceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 493 ESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
+.+++++++.++... .+...++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAP--SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCC--CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCc--chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 888999998765421 11144689999999999999999999877 9999999999999985
No 21
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=8.9e-76 Score=612.80 Aligned_cols=497 Identities=21% Similarity=0.300 Sum_probs=390.1
Q ss_pred cCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEee
Q 008342 20 LTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNS 99 (569)
Q Consensus 20 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 99 (569)
||+.++|+++++++|+++|+++.++++||+||.++++++|++|.+. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcc-hhhHHhh
Q 008342 100 INIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARG-AIEYEKF 178 (569)
Q Consensus 100 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~ 178 (569)
+++.++.+++.+++++++++++|++.+.......... .. ....+........ ......... ......+
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LD-------DIEFAGRDITTNG---LLDNTMGIQYDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TT-------C--------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cc-------cceeeeeeccccc---ccccccccccccchhhc
Confidence 9999999999999999999999998765332100000 00 0000000000000 000000000 0001111
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLA 258 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (569)
...............++++++|+|||||||.||+|.+||+++..........+++.++|++++.+|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112335678999999999999999999999999999998888889999999999999999999998888888
Q ss_pred HhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEe
Q 008342 259 ALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRIT 338 (569)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~ 338 (569)
..|+++++.+.+++..+++.|+++++|++.++|+++..|.+..... ..++|.+++||+++++++.+++.+.+++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 302 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE----PYNLQKILLGGAKLSATMIETALQYNLPIY 302 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS----CTTCCEEEECSSCCCHHHHHHHHHTTCCEE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC----cCcccEEEEeCCCCCHHHHHHHHHhCCCEe
Confidence 8899988888899999999999999999999999999999876543 238999999999999999999998899999
Q ss_pred cccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccC
Q 008342 339 HTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLK 418 (569)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~ 418 (569)
+.||+||+++.++.+. .........++|.|++++ +++|+|++. + +.|||+++|+.++.||++
T Consensus 303 ~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~~------~--~~GEl~v~g~~~~~gY~~ 364 (501)
T 3ipl_A 303 NSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPNK------E--GHGELMIKGANVMNGYLY 364 (501)
T ss_dssp EEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCCS------S--CCEEEEEESTTSCSCCSB
T ss_pred ccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCCC------C--CccEEEEeccchhhhhCc
Confidence 9999999986554432 112233457899999999 699999761 2 579999999999999999
Q ss_pred CcchhhhhhcCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEE
Q 008342 419 NPKANEEAFANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAF 498 (569)
Q Consensus 419 ~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~ 498 (569)
+++.+.. |.+|||+|||+|+++++|+++++||.||+|+++|++|+|.+||++|.+||+|.+++|++.+++..|+.++++
T Consensus 365 ~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~ 443 (501)
T 3ipl_A 365 PTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLY 443 (501)
T ss_dssp STTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred Chhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEE
Confidence 9998887 899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 499 VTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
++..... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++...+..
T Consensus 444 v~~~~~~-------~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 444 FVSESDI-------SKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp EEESSCC-------CHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred EEeCCCC-------CHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 8865433 34789999999999999999999887 9999999999999998877653
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.7e-75 Score=613.63 Aligned_cols=498 Identities=21% Similarity=0.221 Sum_probs=408.0
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEe
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLN 98 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v 98 (569)
..|+.++|+++++++|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHhh
Q 008342 99 SINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEKF 178 (569)
Q Consensus 99 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (569)
|+++.++.+++.+++++++++++|++++....+ ....++.+. .+...
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~~------------------~~~~~ 129 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSLS------------------EIESA 129 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEHH------------------HHHHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccchh------------------hhhhc
Confidence 999999999999999999999999987643211 011111111 01111
Q ss_pred hhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--hCCCCCcEEEEcCCccchhhHHHHHH
Q 008342 179 LETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI--WGMNEGAVFLWTLPMFHGNGWSYTWS 256 (569)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (569)
.....+ ........++++++|+|||||||.||+|++||+++.+...+.... +++.+++++++..|++|..++...+.
T Consensus 130 ~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 111111 111233567899999999999999999999999998877766554 67889999999999999999887777
Q ss_pred HHHhcceEEEeccC---ChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc
Q 008342 257 LAALCGTSICLRQV---TAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK 333 (569)
Q Consensus 257 ~~~~g~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~ 333 (569)
.+..|+++++.+.. ++..+++.+.++++|++.++|+++..+.......... ++++|.+++||+++++++.+++.+.
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHH
Confidence 77888888877653 8899999999999999999999999998876554444 8999999999999999999998844
Q ss_pred --CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 334 --GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
++++++.||+||+++.++.+..... ........++|.|++++ +++|+|++ +++++.| +.|||+++|++
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~ 357 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITRE------MVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPA 357 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECHH------HHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTT
T ss_pred CCCceEEeCcCccHHhhhhceeecccc------cccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccc
Confidence 8999999999999987765432211 11122346799999999 69999976 8999988 78999999999
Q ss_pred ccccccCCcchhhhhh----cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeec
Q 008342 412 VMKGYLKNPKANEEAF----ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARP 487 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~----~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~ 487 (569)
++.|||++++.+.+.| .+|||+|||+|+++++|++++.||.||+|+++|++|+|.+||++|.++|.|.+++|++.+
T Consensus 358 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 437 (521)
T 3l8c_A 358 VSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRY 437 (521)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCC
T ss_pred cChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEee
Confidence 9999999999999988 357999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC-CCceeeEEEEecCCcchh--hhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcCC
Q 008342 488 DER-WGESPCAFVTLKPEADEL--DKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 488 ~~~-~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
++. .++.++++|++.++.... ......++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++.+.++..
T Consensus 438 ~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 438 NKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp SSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred cCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 554 467899999988775321 112356889999999999999999999887 99999999999999998876543
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.8e-76 Score=626.44 Aligned_cols=483 Identities=21% Similarity=0.271 Sum_probs=319.7
Q ss_pred cccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceE
Q 008342 18 TALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVL 97 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~ 97 (569)
...++.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHHh
Q 008342 98 NSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYEK 177 (569)
Q Consensus 98 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (569)
+|+++.++.+++.+++++++++++|++.+....+ .....+.+.+..
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~------------------- 198 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEA------------------- 198 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC---------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeeccc-------------------
Confidence 9999999999999999999999999987643211 111111111110
Q ss_pred hhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHH
Q 008342 178 FLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSL 257 (569)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~ 257 (569)
..............++++++|+|||||||.||+|+++|+++.+.... ...+++.++|+++..+|++|..+....+.+
T Consensus 199 --~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 275 (570)
T 4gr5_A 199 --ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGA 275 (570)
T ss_dssp -------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHH
T ss_pred --cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 00011111223356789999999999999999999999998766544 345678899999999999887777777777
Q ss_pred HHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhc--
Q 008342 258 AALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-- 333 (569)
Q Consensus 258 ~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-- 333 (569)
++.|+++++.+ .+++..+++.|+++++|++.++|+++..|.+.... . ++++|.+++||++++++..+++.+.
T Consensus 276 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 276 LLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCC
Confidence 78888888775 47899999999999999999999999999876532 2 8899999999999999998888744
Q ss_pred CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCccc
Q 008342 334 GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVM 413 (569)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~ 413 (569)
++++++.||+||++++++.+..... .......++|.|++++ +++|+|++ +++++.| +.|||+|+|++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~ 420 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVAG-------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLA 420 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCGG-------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCC
T ss_pred CcEEEEeechhhheeeeeeeeeccc-------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccc
Confidence 8999999999999887765432211 1112235689999999 69999976 8999988 8999999999999
Q ss_pred ccccCCcchhhhhhc---------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEE
Q 008342 414 KGYLKNPKANEEAFA---------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVV 484 (569)
Q Consensus 414 ~gy~~~~~~~~~~~~---------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 484 (569)
.|||++++.+.+.|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|+
T Consensus 421 ~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv 500 (570)
T 4gr5_A 421 HGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVL 500 (570)
T ss_dssp CEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------------
T ss_pred hhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEE
Confidence 999999999999984 26999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 485 ARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
+.+++.+++.++++++........ ..++|+++|+++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 501 ~~~~~~~~~~~~a~vv~~~~~~~~----~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 501 AQDSRLGDKQLVAYVVAERADAPP----DAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EeeCCCCCeEEEEEEEecCCCCCc----CHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 999888889999999876543221 56789999999999999999998777 999999999999998753
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-74 Score=615.17 Aligned_cols=478 Identities=16% Similarity=0.194 Sum_probs=395.3
Q ss_pred cccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc
Q 008342 16 NYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA 95 (569)
Q Consensus 16 ~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~ 95 (569)
.+.+.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa 102 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGH 102 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 34577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhH
Q 008342 96 VLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEY 175 (569)
Q Consensus 96 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (569)
+++|++|.++.+++.++++++++++++++....... .....+.+..
T Consensus 103 ~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~------------------- 148 (620)
T 4dg8_A 103 HYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRH------------------- 148 (620)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGG-------------------
T ss_pred EEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeecc-------------------
Confidence 999999999999999999999999999765432100 0000111100
Q ss_pred HhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHH
Q 008342 176 EKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTW 255 (569)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (569)
.. ............++++++|+|||||||.||+|+++|+++.+.... ...+++.++|+++...|++|..++...+
T Consensus 149 --~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 149 --LP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp --CC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred --CC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 00 011111112346789999999999999999999999998776654 4567889999999999999999998888
Q ss_pred HHHHhcceEEEec--cCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhh-
Q 008342 256 SLAALCGTSICLR--QVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQ- 332 (569)
Q Consensus 256 ~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~- 332 (569)
.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..+.+.... . ++++|.+++||++++++..+++.+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---~-l~~lr~v~~gGe~l~~~~~~~~~~~ 299 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---C-LGGLRQLLTGGDILSVPHVRRALLR 299 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChh---h-CCCccEEEEEeCcCCHHHHHHHHHh
Confidence 8888899888863 57899999999999999999999999999875332 2 789999999999999888888763
Q ss_pred c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCc
Q 008342 333 K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSC 411 (569)
Q Consensus 333 ~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~ 411 (569)
. ++++++.||+||++.+++.+.... ........++|.|++++ +++|+|++....+|.| +.|||+|+|++
T Consensus 300 ~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~ 369 (620)
T 4dg8_A 300 HPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAG 369 (620)
T ss_dssp CTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETT
T ss_pred CCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccc
Confidence 3 899999999999997776543221 11223346899999999 6999998844447777 78999999999
Q ss_pred ccccccCCcchhhhhhcC--------CeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEE
Q 008342 412 VMKGYLKNPKANEEAFAN--------GWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAV 483 (569)
Q Consensus 412 ~~~gy~~~~~~~~~~~~~--------g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 483 (569)
++.||+++++.+.+.|.+ +||+|||+|++++||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~V 449 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCAL 449 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEE
T ss_pred cccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEE
Confidence 999999999999999954 799999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHh
Q 008342 484 VARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKE 558 (569)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (569)
++.+++..++ ++++++.... .+.+.++++||.|++|..+++++ ||+|++||++|++|++.+.+
T Consensus 450 v~~~~~~~~~-lv~~~~~~~~-----------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 450 LVRERNGVKQ-LLCAWTGKAD-----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEETTEEE-EEEEEEECTT-----------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred EEEeCCCceE-EEEEEecChH-----------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9988775444 4444443221 23345667899999999999877 99999999999999987654
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.9e-75 Score=655.87 Aligned_cols=512 Identities=24% Similarity=0.343 Sum_probs=342.8
Q ss_pred ccCHHHHHHHhhhhCCCceeeeeC--CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCce
Q 008342 19 ALTPLWFINRAATLHPTRKSVVYG--SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAV 96 (569)
Q Consensus 19 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~ 96 (569)
++|+.++|+++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999987 689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhhHH
Q 008342 97 LNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIEYE 176 (569)
Q Consensus 97 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (569)
++|++|.++.+++.+++++++++++|++.+....+....... ...++.+++..... ...+...|.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---------GVVIVCIDDNESVP------IPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---------CCEEEECCCCTTSC------CCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---------CceEEEeCCccccc------CCcccccHH
Confidence 999999999999999999999999999988766555443221 23345544321110 112234455
Q ss_pred hhhhcCCCC--CCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh----HhCCCCCcEEEEcCCccchhh
Q 008342 177 KFLETGDPE--FAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL----IWGMNEGAVFLWTLPMFHGNG 250 (569)
Q Consensus 177 ~~l~~~~~~--~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g 250 (569)
++....... ........++++++|+|||||||.||+|+++|+++......... .+++.++|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 554433221 11223457889999999999999999999999999888766543 356889999999999999999
Q ss_pred HHHH-HHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHH
Q 008342 251 WSYT-WSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 251 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
+... +..+..|+++++.+.+++..+++.|+++++|++.++|+++..|.+........ ++++|.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 8654 44556677777778899999999999999999999999999999876555545 899999999999999999999
Q ss_pred hhh-c-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEE
Q 008342 330 MSQ-K-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVM 407 (569)
Q Consensus 330 ~~~-~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v 407 (569)
+.+ + ++++++.||+||++++++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 985 4 8999999999999976655421111 01112347899999999 6999998889999988 7899999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEee
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVAR 486 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~ 486 (569)
+|++++.||+++++.+.+.| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.+||.|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 487 PDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
+++..|+.++++|+..++... ..++|+++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 515 ~~~~~g~~~~a~vv~~~~~~~-----~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDSEL-----SEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCCCC-----CHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 998889999999987765443 56789999999999999999988777 9999999999999999987644
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.7e-74 Score=600.33 Aligned_cols=480 Identities=25% Similarity=0.342 Sum_probs=382.5
Q ss_pred cccccccCHHHHHHHhhhhCCC-ceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhh
Q 008342 14 SANYTALTPLWFINRAATLHPT-RKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPM 92 (569)
Q Consensus 14 ~~~~~~~~l~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 92 (569)
+...+-+|+.++|+++++++|+ ++|+++.++++||+||.++++++|++|. .|++|+++++|++++++++|||++
T Consensus 16 ~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 16 PRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp --------CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3334456789999999999998 9999999999999999999999999875 388999999999999999999999
Q ss_pred cCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcch
Q 008342 93 AGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGA 172 (569)
Q Consensus 93 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 172 (569)
+|++++|+++.++.+++.+++++++++++|++.+.... ... .....+.+...
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~--------~~~~~~~~~~~--------------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PAL--------GALERVDVDVR--------------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGG--------TTSEEEECCTT---------------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhh--------ccccccccccc---------------
Confidence 99999999999999999999999999999998652100 000 01111111110
Q ss_pred hhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHH
Q 008342 173 IEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWS 252 (569)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 252 (569)
...........++++++|+|||||||.||+|+++|+++..........+++.++|++++.+|++|..|+.
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHT
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHH
Confidence 0011112335678999999999999999999999999999999888899999999999999999999986
Q ss_pred H-HHHHHHhcceEEEeccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCC--CCCCcccceeeeecCCCCCHHHHHH
Q 008342 253 Y-TWSLAALCGTSICLRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPED--TILPLTNVVNVNTAGAPPPPSLLFA 329 (569)
Q Consensus 253 ~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--~~~~l~~l~~~~~~g~~l~~~~~~~ 329 (569)
. .+.++..|+++++...+++..+++.+ ++++|+++++|+++..+.+..... ....++++|.+++||+++++++.++
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~ 291 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHER 291 (505)
T ss_dssp TTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHH
Confidence 4 55666778888888889999999999 889999999999999998743221 1112678999999999999999999
Q ss_pred hhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCC-CCCceEEEEE
Q 008342 330 MSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPA-DGKTIGEIVM 407 (569)
Q Consensus 330 ~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~v 407 (569)
+.+. ++++++.||+||+++.++..... .....++|.|++++ +++|+|++ +++++. ++++.|||++
T Consensus 292 ~~~~~~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v 358 (505)
T 3nyq_A 292 IAAATGRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQV 358 (505)
T ss_dssp HHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEE
T ss_pred HHHhcCCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEE
Confidence 9854 99999999999998655433211 12336899999999 69999987 888875 2237899999
Q ss_pred ecCcccccccCCcchhhhhh-cCCeeecCceeEEcCCCeEEEeccc-CceEEeCceeechHHHHHHHhcCCCceeeEEEe
Q 008342 408 RGSCVMKGYLKNPKANEEAF-ANGWFHSGDLAVKHPDNYIEIKDRL-KDVIISGGENISSVEVEKVLYLHPLVLEAAVVA 485 (569)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~tGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~ 485 (569)
+|++++.||+++++.+...| .+|||+|||+|++++||+++++||. ||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 359 ~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 359 RGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438 (505)
T ss_dssp ESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred ecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence 99999999999999999999 4899999999999999999999998 599999999999999999999999999999999
Q ss_pred ecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHH
Q 008342 486 RPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRA 554 (569)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (569)
.+++..|+.+++++++.++.... ..++|+++|+++|+.|++|..+.+++ ||+|++||++|++|++
T Consensus 439 ~~~~~~g~~l~a~vv~~~~~~~~----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 439 EPDPDLGERIVAWIVPADPAAPP----ALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEETTTEEEEEEEEEESSTTSCC----CHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred eECCCCCcEEEEEEEECCCCCCC----CHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999899999999987643221 56789999999999999999999877 9999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-73 Score=604.06 Aligned_cols=507 Identities=19% Similarity=0.212 Sum_probs=316.3
Q ss_pred ccccccccccccCHHHHHHHhhhhCCCceeeeeCC----------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 008342 9 DLPKISANYTALTPLWFINRAATLHPTRKSVVYGS----------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78 (569)
Q Consensus 9 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 78 (569)
........++++|+.++|+++|+++|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++
T Consensus 9 ~~~~~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~ 87 (562)
T 3ite_A 9 SSKVSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLD 87 (562)
T ss_dssp ---------CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred ccccceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeC
Confidence 33445556778999999999999999999998753 789999999999999999999999 7999999999
Q ss_pred CchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCC
Q 008342 79 NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDES 158 (569)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 158 (569)
|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+...... .. ....++....
T Consensus 88 n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~-------~~~~~~~~~~-- 153 (562)
T 3ite_A 88 RSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LP-------PETKVLDTKN-- 153 (562)
T ss_dssp SCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CC-------TTCEEEETTC--
T ss_pred CCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cC-------ccceeecccc--
Confidence 999999999999999999999999999999999999999999999876432110 00 1111211111
Q ss_pred cchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH--------
Q 008342 159 CDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-------- 230 (569)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~-------- 230 (569)
..+.+.+....... ......++++++|+|||||||.||+|++||+++..........
T Consensus 154 --------------~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~ 218 (562)
T 3ite_A 154 --------------QSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKS 218 (562)
T ss_dssp --------------HHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGG
T ss_pred --------------hhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchh
Confidence 12222232222221 1123456788999999999999999999999998877654433
Q ss_pred hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCC-hHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCc
Q 008342 231 WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVT-AKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPL 309 (569)
Q Consensus 231 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l 309 (569)
+.+...+++++..|++|..++...+..+..|++.++...+. +..+++.++++++|++.++|++++.+..... . +
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~----~-~ 293 (562)
T 3ite_A 219 LELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----D-A 293 (562)
T ss_dssp GGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGG----G-S
T ss_pred cccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCcc----c-c
Confidence 45778899999999999888887777888888887765543 5778999999999999999999888754332 2 7
Q ss_pred ccceeeeecCCCCCHHHHHHhhhc-CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeee
Q 008342 310 TNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVID 388 (569)
Q Consensus 310 ~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d 388 (569)
+++|.+++||+++++++.+++.+. ++++++.||+||+++.++.....+. ....++|.|++++ +++|+|
T Consensus 294 ~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d 362 (562)
T 3ite_A 294 PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLA 362 (562)
T ss_dssp TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEEC
T ss_pred CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEe
Confidence 899999999999999999999865 8999999999999877665443221 1236789999999 699999
Q ss_pred CCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCC--eeecCceeEEcCCCeEEEecccCceEEeCceeechH
Q 008342 389 ARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANG--WFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSV 466 (569)
Q Consensus 389 ~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g--~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (569)
++++++++.| +.|||+++|++++.|||++++.+...+.+| ||+|||+|++++||++++.||.||+||++|++|+|.
T Consensus 363 ~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~ 440 (562)
T 3ite_A 363 PGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELG 440 (562)
T ss_dssp TTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC--------------
T ss_pred CCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHH
Confidence 9889999988 789999999999999999999888777777 999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCceeeEEEeecCCCCCceeeEEEEecCCcchh--------hhhhHHHHHHHHHHhcCCCCcCCceEEec
Q 008342 467 EVEKVLYLH-PLVLEAAVVARPDERWGESPCAFVTLKPEADEL--------DKGKLAEDVSKFCRAKMPSYWVPKSVVFA 537 (569)
Q Consensus 467 ~iE~~l~~~-~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~~~p~~i~~~ 537 (569)
|||++|.++ +.+.+++|++.+++..++..++.++...+.... +.....++|+++|+++|+.|++|..+.++
T Consensus 441 eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v 520 (562)
T 3ite_A 441 EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPI 520 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEe
Confidence 999999998 778889999888888777766666554432211 11123468999999999999999999987
Q ss_pred c-CCCC-CCCcccHHHHHHHHHhcCCcc
Q 008342 538 A-LPKS-ATGKIQKHLLRAKAKEMGPVK 563 (569)
Q Consensus 538 ~-lP~t-~~GKi~r~~l~~~~~~~~~~~ 563 (569)
+ ||+| ++||++|++|++++.+....+
T Consensus 521 ~~lP~t~~~GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 521 SFIPLRDTSAKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp ----------------------------
T ss_pred ccCCCCCCCCcchHHHHHHHHhccCHHH
Confidence 7 9998 999999999999998766543
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.1e-72 Score=598.60 Aligned_cols=513 Identities=18% Similarity=0.173 Sum_probs=409.8
Q ss_pred ccccccccccCHHHHHHHhhhhCCCceeeeeC----CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHH
Q 008342 11 PKISANYTALTPLWFINRAATLHPTRKSVVYG----SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEA 86 (569)
Q Consensus 11 ~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~ 86 (569)
|......+++|+.++|+++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+++++|+++++++
T Consensus 2 s~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~ 81 (590)
T 3kxw_A 2 SLKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81 (590)
T ss_dssp CCSHHHHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CcchhhcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHH
Confidence 45556678899999999999999999999874 48999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceEeeccccCC---HHHHHHHHhcCCceEEEEcccchHHHHHHH-HHHhhhcCCCCCcCeEEEecCCCcchh
Q 008342 87 QFGAPMAGAVLNSINIRLN---ATVVAFILSHASSAVVIVDQEFFSLAEEAL-KMMEANSEGKLKTPHLIVIGDESCDSK 162 (569)
Q Consensus 87 ~lA~~~~G~~~v~l~~~~~---~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (569)
+|||+++|++++|+++.++ .+++.++++.+++++++++.+....+.... ...+ ....+..+..
T Consensus 82 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~------ 148 (590)
T 3kxw_A 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIAL------ 148 (590)
T ss_dssp HHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEG------
T ss_pred HHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeec------
Confidence 9999999999999999884 578999999999999999877554432211 1110 0111111110
Q ss_pred hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEc
Q 008342 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWT 242 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~ 242 (569)
+.+.... ..........++++++|+|||||||.||+|++||+++..........+++.++|++++.
T Consensus 149 -------------~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~ 214 (590)
T 3kxw_A 149 -------------ESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSW 214 (590)
T ss_dssp -------------GGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred -------------hhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEe
Confidence 0100000 01111123567899999999999999999999999999999998889999999999999
Q ss_pred CCccchhhHHH-HHHHHHhcceEEEeccC----ChHHHHHHHHhcCccEEeehHHHHHHHHccCCC---CCCCCccccee
Q 008342 243 LPMFHGNGWSY-TWSLAALCGTSICLRQV----TAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVVN 314 (569)
Q Consensus 243 ~p~~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~l~~ 314 (569)
+|++|.+|+.. .+.++..|+++++.+.+ ++..+++.|+++++|++.++|+++..+.+.... .... ++++|.
T Consensus 215 ~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~ 293 (590)
T 3kxw_A 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVT 293 (590)
T ss_dssp SCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCE
T ss_pred cCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHH
Confidence 99999999877 44555556666666554 789999999999999999999999998875322 2223 889999
Q ss_pred eeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCC----------------Cchhhhhcc
Q 008342 315 VNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSL----------------PFETQARLN 371 (569)
Q Consensus 315 ~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 371 (569)
+++||+++++++.+++.+. +.++++.||+||++++++.+.....+... .........
T Consensus 294 ~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (590)
T 3kxw_A 294 AFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKL 373 (590)
T ss_dssp EEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEE
T ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceE
Confidence 9999999999999988743 34799999999999877654332111000 001122345
Q ss_pred ccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcC-------C--eeecCceeEEcC
Q 008342 372 ARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFAN-------G--WFHSGDLAVKHP 442 (569)
Q Consensus 372 ~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~tGD~~~~~~ 442 (569)
.++|.|+++ ++|+|++++++++.| +.|||+|+|++++.|||++++.+.+.|.+ | ||+|||+|+++
T Consensus 374 ~~~G~p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d- 447 (590)
T 3kxw_A 374 VSSGNPIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH- 447 (590)
T ss_dssp ECCCEESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-
T ss_pred eccCCCCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-
Confidence 788998886 788999889999988 88999999999999999999999999953 5 99999999999
Q ss_pred CCeEEEecccCceEEeCceeechHHHHHHH-hcCCCce--eeEEEeecCCCCCceeeEEEEecCCcc-hhhhhhHHHHHH
Q 008342 443 DNYIEIKDRLKDVIISGGENISSVEVEKVL-YLHPLVL--EAAVVARPDERWGESPCAFVTLKPEAD-ELDKGKLAEDVS 518 (569)
Q Consensus 443 ~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~g~~~~~~v~~~~~~~-~~~~~~~~~~l~ 518 (569)
+|.++++||.||+||++|++|+|.+||++| ..+|.|. +|+|++.+++. ++.+++++++.++.. .. ..+++.
T Consensus 448 dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~----~~~~l~ 522 (590)
T 3kxw_A 448 ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDV----AQDNLF 522 (590)
T ss_dssp TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHH----HHHHHH
T ss_pred CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccch----hHHHHH
Confidence 999999999999999999999999999999 7888998 89999988776 678888888877642 21 456777
Q ss_pred HHHHhcCCC-CcCCc-eEEec--c-CCCCCCCcccHHHHHHHHHhcCCc
Q 008342 519 KFCRAKMPS-YWVPK-SVVFA--A-LPKSATGKIQKHLLRAKAKEMGPV 562 (569)
Q Consensus 519 ~~~~~~l~~-~~~p~-~i~~~--~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (569)
++|++.++. +++|. .+.++ + ||+|++||++|++|++++.+....
T Consensus 523 ~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 523 NEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence 778777774 67775 44443 4 999999999999999999887653
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.5e-70 Score=584.40 Aligned_cols=506 Identities=19% Similarity=0.206 Sum_probs=405.8
Q ss_pred ccccccccCHHHHHHHhhhhCCCceeeeeC---CeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHH
Q 008342 13 ISANYTALTPLWFINRAATLHPTRKSVVYG---SKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFG 89 (569)
Q Consensus 13 ~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA 89 (569)
+.......|+.++|++++.++|+.+++... ++++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus 14 ~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 93 (576)
T 3gqw_A 14 PMRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFA 93 (576)
T ss_dssp CCCCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CcccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 334445669999999999999999988753 38999999999999999999999999999999999999999999999
Q ss_pred hhhcCceEeeccccCC-------HHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchh
Q 008342 90 APMAGAVLNSINIRLN-------ATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSK 162 (569)
Q Consensus 90 ~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (569)
|+++|++++|+++.++ .+++.++++.++++++|++.+....+.......+ ...++.
T Consensus 94 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--------~~~~~~--------- 156 (576)
T 3gqw_A 94 CQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP--------ELHVLS--------- 156 (576)
T ss_dssp HHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT--------TCEEEE---------
T ss_pred HHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC--------cceecc---------
Confidence 9999999999999998 8999999999999999999887665554322211 111110
Q ss_pred hhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhH-hCCCCCcEEEE
Q 008342 163 QLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALI-WGMNEGAVFLW 241 (569)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~-~~~~~~d~~~~ 241 (569)
..+...+ ...........++++++|+|||||||.||+|+++|+++.......... +++.++|++++
T Consensus 157 ----------~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~ 223 (576)
T 3gqw_A 157 ----------HAWFKAL---PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVS 223 (576)
T ss_dssp ----------HHHHHTS---CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEE
T ss_pred ----------hhhhhcc---cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEE
Confidence 0111111 111111223567899999999999999999999999998888776554 78999999999
Q ss_pred cCCccchhhHHHHHHHHHh-cceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccCCC---CCCCCcccce
Q 008342 242 TLPMFHGNGWSYTWSLAAL-CGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPE---DTILPLTNVV 313 (569)
Q Consensus 242 ~~p~~~~~g~~~~~~~~~~-g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~---~~~~~l~~l~ 313 (569)
.+|++|.+|+...+..++. |+++++... +++..+++.|+++++|++.++|+++..+.+.... .... ++++|
T Consensus 224 ~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr 302 (576)
T 3gqw_A 224 WLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELD-LSCWR 302 (576)
T ss_dssp CCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCC-CTTCC
T ss_pred cCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCC-hhhhH
Confidence 9999999999766555555 444444442 5889999999999999999999999888765332 1222 78999
Q ss_pred eeeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCCCc-----------------hhhhh
Q 008342 314 NVNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSLPF-----------------ETQAR 369 (569)
Q Consensus 314 ~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 369 (569)
.+++||+++++++.+++.+. ++++++.||+||++++++.+........... .....
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 99999999999999998743 6789999999999987766543222110000 00011
Q ss_pred ccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCCCeEEEe
Q 008342 370 LNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPDNYIEIK 449 (569)
Q Consensus 370 ~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~g~l~~~ 449 (569)
...++|.|++++ +++|+|++ +++++.| +.|||+++|++++.||+++++.+...+.+|||+|||+|++ +||+++++
T Consensus 383 ~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~ 457 (576)
T 3gqw_A 383 TFVNCGKALPEH-GIEIRNEA-GMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVT 457 (576)
T ss_dssp EEEBCCEECTTC-EEEEECTT-SCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEE
T ss_pred ceeecCCcCCCC-eEEEECCC-CCCCCCC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEE
Confidence 224789999999 69999965 9999988 8999999999999999999999888889999999999999 69999999
Q ss_pred cccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcC-CCC
Q 008342 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKM-PSY 528 (569)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~ 528 (569)
||.||+||++|++|+|.+||++|.+||.|.++.|++...+. +...+++........ ..+++.+++++++ +.+
T Consensus 458 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~-----~~~~l~~~l~~~l~~~~ 530 (576)
T 3gqw_A 458 GRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEE-----RRGQLIHALAARIQSEF 530 (576)
T ss_dssp EETTTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHH-----HHHHHHHHHHHHHHHHH
T ss_pred ecCcceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchh-----HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888887664 345555555444332 4567888888887 678
Q ss_pred cCCceEEec---cCCCCCCCcccHHHHHHHHHhcCC
Q 008342 529 WVPKSVVFA---ALPKSATGKIQKHLLRAKAKEMGP 561 (569)
Q Consensus 529 ~~p~~i~~~---~lP~t~~GKi~r~~l~~~~~~~~~ 561 (569)
++|..+.++ +||+|++||++|++|++++.+...
T Consensus 531 ~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~ 566 (576)
T 3gqw_A 531 GVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYA 566 (576)
T ss_dssp SCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHT
T ss_pred CCceeEEEECCCCcCcCCCccchHHHHHHHHHHHhh
Confidence 999888754 399999999999999999987543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=9.1e-71 Score=632.81 Aligned_cols=487 Identities=22% Similarity=0.290 Sum_probs=412.9
Q ss_pred ccccccCHHHHHHHhhhhCCCceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcC
Q 008342 15 ANYTALTPLWFINRAATLHPTRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAG 94 (569)
Q Consensus 15 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 94 (569)
...+..++.++|+++++++|+++|+++.++++||+||+++++++|++|.+.|+++|++|+|++++++++++++|||+++|
T Consensus 459 ~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 459 QAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp CCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 34445799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCCCcchhhhHHhhhcchhh
Q 008342 95 AVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDESCDSKQLEYALARGAIE 174 (569)
Q Consensus 95 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (569)
++++|++|.++.+++.++++++++++++++.+....... ++ .....+.+++.. .
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~-------~~~~~~~~~~~~---------------~ 592 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP-------YTGTTLFIDDQT---------------R 592 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC-------CCSEEEESSCGG---------------G
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC-------CCCcEEEecccc---------------c
Confidence 999999999999999999999999999998765332110 00 112223222210 0
Q ss_pred HHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHH
Q 008342 175 YEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYT 254 (569)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (569)
+ .. ..........++++++|+|||||||.||||+++|+++.+. .+....+++.++|+++...|++|..+....
T Consensus 593 ---~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~ 665 (1304)
T 2vsq_A 593 ---F-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDF 665 (1304)
T ss_dssp ---G-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---c-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHH
Confidence 0 00 1111122356789999999999999999999999998865 445556788999999999999998888888
Q ss_pred HHHHHhcceEEEecc---CChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhh
Q 008342 255 WSLAALCGTSICLRQ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMS 331 (569)
Q Consensus 255 ~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~ 331 (569)
+.+++.|+++++.+. .++..+.+.|+++++|++.++|+++..+.+.... . ++++|.+++|||++++++.+++.
T Consensus 666 ~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~---~-~~~lr~~~~gGe~l~~~~~~~~~ 741 (1304)
T 2vsq_A 666 YASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---W-MKGLRCILFGGERASVPHVRKAL 741 (1304)
T ss_dssp HHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH---H-HHTCSEEEEESSCCCHHHHHHHH
T ss_pred HHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh---c-CCCccEEEEecCCCCHHHHHHHH
Confidence 888888988888754 6899999999999999999999999999875321 2 68899999999999999999887
Q ss_pred hc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEec
Q 008342 332 QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRG 409 (569)
Q Consensus 332 ~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~ 409 (569)
+. +++++|.||+||++..++.+..... .......++|.|++++ ++.|+|++ ++++|.| +.|||+|+|
T Consensus 742 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GEl~i~G 810 (1304)
T 2vsq_A 742 RIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGELCISG 810 (1304)
T ss_dssp HHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEEEEEEE
T ss_pred HhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceEEEEec
Confidence 54 5799999999999987765532210 0111236799999999 69999987 8999988 899999999
Q ss_pred CcccccccCCcchhhhhhc-------CCeeecCceeEEcCCCeEEEecccCceEEeCceeechHHHHHHHhcCCCceeeE
Q 008342 410 SCVMKGYLKNPKANEEAFA-------NGWFHSGDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAA 482 (569)
Q Consensus 410 ~~~~~gy~~~~~~~~~~~~-------~g~~~tGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 482 (569)
+++++||+++++.+.++|. ++||+|||+|++++||.++++||.||+||++|++|.|.|||++|.++|+|.+++
T Consensus 811 ~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~ 890 (1304)
T 2vsq_A 811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAV 890 (1304)
T ss_dssp TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEE
T ss_pred cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEE
Confidence 9999999999999999983 349999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHH
Q 008342 483 VVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKA 556 (569)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (569)
|++.+++..++.+++|++..... ..++|+++++++||.|++|..+++.+ ||+|++||++|++|++..
T Consensus 891 V~~~~~~~~~~~l~a~vv~~~~~-------~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 891 VVADRHESGDASINAYLVNRTQL-------SAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp EEEECCSSSCCEEEEEEECSSSS-------CHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred EEEEecCCCCEEEEEEEeCCCCC-------CHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 99998888888999999876532 34789999999999999999999777 999999999999997644
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.1e-58 Score=479.77 Aligned_cols=407 Identities=19% Similarity=0.216 Sum_probs=312.4
Q ss_pred cccccccccccCHHHHHHHhhhhCCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Q 008342 10 LPKISANYTALTPLWFINRAATLHPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV 80 (569)
Q Consensus 10 ~~~~~~~~~~~~l~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~ 80 (569)
.......++++|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|+
T Consensus 14 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~ 92 (480)
T 3t5a_A 14 LVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92 (480)
T ss_dssp ----------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSS
T ss_pred CCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCc
Confidence 3444556778999999999999999999999865 899999999999999999999996 999999999999
Q ss_pred hhHHHHHHHhhhcCceEeeccc---cCCHHHHHHHHhcCCceEEEEcccchHHHHHHHHHHhhhcCCCCCcCeEEEecCC
Q 008342 81 PAMYEAQFGAPMAGAVLNSINI---RLNATVVAFILSHASSAVVIVDQEFFSLAEEALKMMEANSEGKLKTPHLIVIGDE 157 (569)
Q Consensus 81 ~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 157 (569)
+++++++|||+++|++++|+++ .++.+++.+++++++++++|++.+....+......... .....++.++..
T Consensus 93 ~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 167 (480)
T 3t5a_A 93 LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPG-----ESPPSIIEVDLL 167 (480)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGGGS
T ss_pred HHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccc-----ccccceeEeccc
Confidence 9999999999999999999999 78899999999999999999998876655443221110 011223332211
Q ss_pred CcchhhhHHhhhcchhhHHhhhhcCCCCCCCCCCCCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCC--
Q 008342 158 SCDSKQLEYALARGAIEYEKFLETGDPEFAWKPPEDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNE-- 235 (569)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~-- 235 (569)
. .............++++++|+|||||||.||+|++||+++..........+++..
T Consensus 168 ~----------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 225 (480)
T 3t5a_A 168 D----------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDG 225 (480)
T ss_dssp C----------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTT
T ss_pred c----------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccccc
Confidence 1 0111111223356789999999999999999999999999999888888888877
Q ss_pred ----CcEEEEcCCccchhhHHH-HHHHHHhcceEEEecc----CChHHHHHHHHhcCccEEeehHHHHHHHHccC----C
Q 008342 236 ----GAVFLWTLPMFHGNGWSY-TWSLAALCGTSICLRQ----VTAKAVYTAIATHGVTHFCAAPVVLNAIANAS----P 302 (569)
Q Consensus 236 ----~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~----~ 302 (569)
+|++++.+|++|.+|+.. .+.+++.|+++++.+. +++..+++.++++++| +.++|+++..++... .
T Consensus 226 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~ 304 (480)
T 3t5a_A 226 IPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDD 304 (480)
T ss_dssp CCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGG
T ss_pred CCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccc
Confidence 999999999999999765 4555666777777654 3899999999999999 888999888777542 1
Q ss_pred CCCCCCcccceeeeecCCCCCHHHHHHhhhc-------CCeEecccccccCCCCccccccCCCCCCCCch----------
Q 008342 303 EDTILPLTNVVNVNTAGAPPPPSLLFAMSQK-------GFRITHTYGLTELTGPASVCAWKPEWDSLPFE---------- 365 (569)
Q Consensus 303 ~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~---------- 365 (569)
..... +++||.+++||+++++++.+++.+. ++++++.||+||+++.++..............
T Consensus 305 ~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 383 (480)
T 3t5a_A 305 MAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAK 383 (480)
T ss_dssp GTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCC
T ss_pred ccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCcee
Confidence 12233 8999999999999999999999743 24799999999999776655432211000000
Q ss_pred ----hhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhh------------cC
Q 008342 366 ----TQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAF------------AN 429 (569)
Q Consensus 366 ----~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~ 429 (569)
.......++|.|++ + +++|+|++++++++.| +.|||+|+|++++.|||++++.+.+.| .+
T Consensus 384 ~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~ 459 (480)
T 3t5a_A 384 PCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459 (480)
T ss_dssp CCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCC
T ss_pred ecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCC
Confidence 00234468999999 8 6999999989999988 899999999999999999999999999 35
Q ss_pred CeeecCceeEEcCCCeEEEecc
Q 008342 430 GWFHSGDLAVKHPDNYIEIKDR 451 (569)
Q Consensus 430 g~~~tGD~~~~~~~g~l~~~GR 451 (569)
|||+|||+|+++ ||+|+|+||
T Consensus 460 ~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 460 PWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CBEEEEEEEEEE-TTEEEECC-
T ss_pred CeeeccceeeEE-CCEEEEeCC
Confidence 699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=9.1e-53 Score=417.14 Aligned_cols=315 Identities=19% Similarity=0.188 Sum_probs=263.8
Q ss_pred CceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEeccCChHH
Q 008342 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQVTAKA 274 (569)
Q Consensus 195 ~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 274 (569)
+++++|+|||||||.||+|++||+++.+.+......++++++|++++.+|++|.+|+...+..++.|+++++.... ..
T Consensus 37 d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~~ 114 (358)
T 4gs5_A 37 GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--AN 114 (358)
T ss_dssp TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--SC
T ss_pred CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--cc
Confidence 6899999999999999999999999999999988999999999999999999999999888888889988887532 23
Q ss_pred HHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCHHHHHHhhhcCCeEecccccccCCCCccccc
Q 008342 275 VYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPPSLLFAMSQKGFRITHTYGLTELTGPASVCA 354 (569)
Q Consensus 275 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~ 354 (569)
.++.|+++++|++.++|+++..|++...... . ++++|.+++||+++++++.+++++.++++++.||+||+++.++...
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~ 192 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKA 192 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEE
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeeccc
Confidence 4677899999999999999999998765332 3 8999999999999999999999999999999999999987665543
Q ss_pred cCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeec
Q 008342 355 WKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHS 434 (569)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~t 434 (569)
... ...+.+|.+.|++ .+.+. +.||++++|+.. .+|||+|
T Consensus 193 ~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~---------------~~g~~~T 232 (358)
T 4gs5_A 193 LNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT---------------NGQTVQT 232 (358)
T ss_dssp CSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG---------------TTCCEEE
T ss_pred ccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc---------------cCcceec
Confidence 221 1225677777766 23331 349999988632 3689999
Q ss_pred CceeEEcCCCeEEEecccCceEEeCceeechHHHHHHH---hcCCCceeeEEE-eecCCCCCceeeEEEEecCCcchhhh
Q 008342 435 GDLAVKHPDNYIEIKDRLKDVIISGGENISSVEVEKVL---YLHPLVLEAAVV-ARPDERWGESPCAFVTLKPEADELDK 510 (569)
Q Consensus 435 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~~ 510 (569)
||+|+++++| ++++||.||+||++|++|+|.+||++| .+||.|.+++|+ +.+++..|+.++++++..... .
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~-~--- 307 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE-A--- 307 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH-H---
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC-c---
Confidence 9999999888 667799999999999999999999877 467999998876 667888889888888755432 2
Q ss_pred hhHHHHHHHHHHhcCCCCcCCceEEecc-CCCCCCCcccHHHHHHHHHhcC
Q 008342 511 GKLAEDVSKFCRAKMPSYWVPKSVVFAA-LPKSATGKIQKHLLRAKAKEMG 560 (569)
Q Consensus 511 ~~~~~~l~~~~~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (569)
..++|+++|+++|+.|++|+.+++++ ||+|++||++|++|++++.+..
T Consensus 308 --~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 308 --LTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp --HHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred --CHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 55789999999999999999999877 9999999999999999887654
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.8e-47 Score=391.67 Aligned_cols=329 Identities=21% Similarity=0.225 Sum_probs=258.1
Q ss_pred CCc-CceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCccchhhHH-HHHHHHHhcceEEE
Q 008342 192 EDE-WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPMFHGNGWS-YTWSLAALCGTSIC 266 (569)
Q Consensus 192 ~~~-~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~~~~g~~~~~ 266 (569)
..+ +++++++|||||||.||+|.+||+++........ ..+++.++|+++...|+.|..+.. ..+.+...|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 345 8899999999999999999999999877665553 345899999999999987655554 44555666777777
Q ss_pred eccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhhc-CCeEecccccc
Q 008342 267 LRQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLT 344 (569)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~t 344 (569)
.+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+. |+++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 67789999999999999999999999999998764322221 26899999999999999999999865 99999999999
Q ss_pred cCCCCccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchhh
Q 008342 345 ELTGPASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKANE 424 (569)
Q Consensus 345 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 424 (569)
|+++.++...... ....|.+.+++ .++|+|++++++++.| +.|||+++|.. .
T Consensus 242 E~~~~~~~~~~~~-------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~~------------~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQE-------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTLD------------R 293 (436)
T ss_dssp GGTEEEEEEECTT-------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEESS------------C
T ss_pred hhcCCeeEEecCC-------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEeccC------------c
Confidence 9965432221100 02244555677 6999998889999988 78999999842 2
Q ss_pred hhhcCCeeecCceeEEcCCC------e---EEEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCcee
Q 008342 425 EAFANGWFHSGDLAVKHPDN------Y---IEIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESP 495 (569)
Q Consensus 425 ~~~~~g~~~tGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 495 (569)
..|..+||+|||+|+++++| + +++.||.||+|+++|.+|+|.+||++|.++|.|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 34568899999999999998 5 69999999999999999999999999999999999999999888878899
Q ss_pred eEEEEecCCcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEecc---CCCCCCCcccHHH
Q 008342 496 CAFVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFAA---LPKSATGKIQKHL 551 (569)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~~---lP~t~~GKi~r~~ 551 (569)
+++|++. +... +.....+++.+++++.|+.+ .+|..+.+++ ||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DLST-DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TTCC-CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cccc-cchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999988 4322 11123567777787777777 8888887654 99999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.3e-47 Score=390.47 Aligned_cols=330 Identities=17% Similarity=0.197 Sum_probs=265.4
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|.+||+++........ ..+++.++|+++..+|+ +|..++...+.+...|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4678899999999999999999999999877654433 35788999999999998 5777776667777778887777
Q ss_pred ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhhc-CCeEeccccccc
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQK-GFRITHTYGLTE 345 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~~-~~~i~~~YG~tE 345 (569)
+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+. |+++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 7789999999999999999999999999998764322221 15789999999999999999999854 999999999999
Q ss_pred CCCC--ccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchh
Q 008342 346 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423 (569)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 423 (569)
+++. +..|... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +
T Consensus 249 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t 299 (443)
T 2y4o_A 249 VMGPGVACECVET--------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------T 299 (443)
T ss_dssp TTEEEEEEECTTT--------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeEEeccCCC--------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------C
Confidence 8543 2222100 00133344566 6999998889999988 7899999983 2
Q ss_pred hhhhcCCeeecCceeEEcCC-CeE-----EEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 424 EEAFANGWFHSGDLAVKHPD-NYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 424 ~~~~~~g~~~tGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
...|..+||+|||+|+++++ |++ ++.||.||+|+++|.+|+|.+||++|.++|+|.+++|++.+++..++.+.+
T Consensus 300 ~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 300 KEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp CSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred cccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 23456789999999999999 986 899999999999999999999999999999999999988877766788999
Q ss_pred EEEecC--CcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEec---cCCCCCCCcccHHHH
Q 008342 498 FVTLKP--EADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA---ALPKSATGKIQKHLL 552 (569)
Q Consensus 498 ~v~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKi~r~~l 552 (569)
+|++.+ +... .....+++.++|+++|+.+ .+|..+.++ +||+|++||++|+..
T Consensus 380 ~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 380 AVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 998765 2100 0114567888888888876 588877765 399999999999754
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=3.9e-47 Score=389.23 Aligned_cols=328 Identities=18% Similarity=0.162 Sum_probs=266.4
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHhH---hHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---LIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|++||+++........ ..+++.++|+++..+|+ +|..++...+.+...|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 4678999999999999999999999999877654433 35788999999999998 6777777767777778887777
Q ss_pred ccCChHHHHHHHHhcCccEEeehHHHHHHHHccCCCCCCC-CcccceeeeecCCCCCHHHHHHhhh-cCCeEeccccccc
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAPVVLNAIANASPEDTIL-PLTNVVNVNTAGAPPPPSLLFAMSQ-KGFRITHTYGLTE 345 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~-~l~~l~~~~~~g~~l~~~~~~~~~~-~~~~i~~~YG~tE 345 (569)
+.+++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+++.+ +|+++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 7789999999999999999999999999998764322221 1478999999999999999999985 4999999999999
Q ss_pred CCCC--ccccccCCCCCCCCchhhhhccccCCceeeccCCceeeeCCCCcccCCCCCceEEEEEecCcccccccCCcchh
Q 008342 346 LTGP--ASVCAWKPEWDSLPFETQARLNARQGVRTICLDGLDVIDARTNQPVPADGKTIGEIVMRGSCVMKGYLKNPKAN 423 (569)
Q Consensus 346 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 423 (569)
+++. +..|... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 8432 2222110 01234455667 6999998889999988 7899999983 2
Q ss_pred hhhhcCCeeecCceeEEcC-CCeE-----EEecccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeE
Q 008342 424 EEAFANGWFHSGDLAVKHP-DNYI-----EIKDRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCA 497 (569)
Q Consensus 424 ~~~~~~g~~~tGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 497 (569)
...|.++||+|||+|++++ +|++ ++.||.||+|+++|.+|+|.+||++|.+||.|.+++|++.+++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 2345678999999999998 6985 899999999999999999999999999999999999988877777788999
Q ss_pred EEEecCCcchhhhhhHHHHHHHHHHhcCCCC-cCCceEEec---cCCCCCCCcccHHH
Q 008342 498 FVTLKPEADELDKGKLAEDVSKFCRAKMPSY-WVPKSVVFA---ALPKSATGKIQKHL 551 (569)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~~---~lP~t~~GKi~r~~ 551 (569)
+|++.++... .....+++.++|+++|+.+ .+|..+.++ +||+|+ ||++|+.
T Consensus 378 ~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAP--DTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTT--CHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccc--hhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9988765421 0114577888899989887 588887776 399999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=4.8e-30 Score=256.35 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=177.9
Q ss_pred CCcCceEEEEeccCCCCCCcceeecchHHHHHHHHh---HhHhCCCCCcEEEEcCCc-cchhhHHHHHHHHHhcceEEEe
Q 008342 192 EDEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNG---ALIWGMNEGAVFLWTLPM-FHGNGWSYTWSLAALCGTSICL 267 (569)
Q Consensus 192 ~~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (569)
..++++++++|||||||.||+|.++|+++.....+. ...+++.++|++++.+|+ +|..|+...+.+...|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 367788999999999999999999999998887743 345678899999999999 99999988777766676 6666
Q ss_pred ccCChH-----------------------HHHHHHHhcCccEEeehHHHHHHHHccCCCCCCCCcccceeeeecCCCCCH
Q 008342 268 RQVTAK-----------------------AVYTAIATHGVTHFCAAPVVLNAIANASPEDTILPLTNVVNVNTAGAPPPP 324 (569)
Q Consensus 268 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~l~~l~~~~~~g~~l~~ 324 (569)
..+++. .+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 667777 8888999999999999999999998763322122 6889999999999999
Q ss_pred HHHHHhh-hc--CCeEecccccccCCCCccccccCCCCCCCCchhhhhccc-cCCce------eeccCCceeeeCCCCcc
Q 008342 325 SLLFAMS-QK--GFRITHTYGLTELTGPASVCAWKPEWDSLPFETQARLNA-RQGVR------TICLDGLDVIDARTNQP 394 (569)
Q Consensus 325 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~------~~~~~~~~i~d~~~~~~ 394 (569)
++.+++. +. ++++++.||+||+++++..+. . ++|.+ .+++ .++|+|++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~-----------------~~~~G~~~~~~~~~~~~-~v~ivD~~~g~~ 307 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLL-----------------ITSESQQVIYDSFSPFI-TYDVVDSITAQT 307 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC-----------------BCTTCSSCEEECCTTTE-EEEEECTTTCSB
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccc-----------------cccCCCcccccCCCCCe-EEEEECCCCCcC
Confidence 9999998 66 899999999999986554332 2 47888 8888 699999978999
Q ss_pred cCCCCCceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCC--C-------eEEEecccCceEEeCce
Q 008342 395 VPADGKTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD--N-------YIEIKDRLKDVIISGGE 461 (569)
Q Consensus 395 ~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 461 (569)
+|.| +.|||+|++..... + --+|+|||++...+. | .+..++|.++..++.|.
T Consensus 308 vp~G--~~GEl~vt~l~~~~------------~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 308 VEYG--ERGNVIVTHLSPWA------------F-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CCTT--CEEEEEEEEEETTE------------E-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCC--CceEEEEEEcCccc------------c-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9988 89999999853211 1 123899999987653 2 35567777777776664
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.51 E-value=2.1e-14 Score=115.04 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=71.7
Q ss_pred cccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchh--hhhhHHHHHHHHHHhcCCC
Q 008342 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADEL--DKGKLAEDVSKFCRAKMPS 527 (569)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~~~~~l~~ 527 (569)
.|.||+|+++|.+++|.+||++|.+||+|.++++++.+++.+++.+.++++..++.... ......+++.+.+++.+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~-- 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-- 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence 48999999999999999999999999999999999999999899999999888764332 12234455555555544
Q ss_pred CcCCceEEecc---CCCCCCCcccH
Q 008342 528 YWVPKSVVFAA---LPKSATGKIQK 549 (569)
Q Consensus 528 ~~~p~~i~~~~---lP~t~~GKi~r 549 (569)
.++..+.+++ ||+| +||++|
T Consensus 79 -gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 -LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp -SSCCEEEEECTTCSCCC----CCC
T ss_pred -CCccceEEEcCCeecCC-CCCcch
Confidence 2444455542 9998 699987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.48 E-value=1e-13 Score=110.73 Aligned_cols=96 Identities=20% Similarity=0.231 Sum_probs=71.3
Q ss_pred cccCceEEeCceeechHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcc---hhhhhhHHHHHHHHHHhcCC
Q 008342 450 DRLKDVIISGGENISSVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEAD---ELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~---~~~~~~~~~~l~~~~~~~l~ 526 (569)
||.||+|+++|.+++|.+||++|.+||+|.++++++.+++.+++.+.+++++ ++.. ..+.++..+.|.+.+++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888777778899999998 5432 12233355666666665542
Q ss_pred CCcCCceEEecc---CCCCCCCcccHH
Q 008342 527 SYWVPKSVVFAA---LPKSATGKIQKH 550 (569)
Q Consensus 527 ~~~~p~~i~~~~---lP~t~~GKi~r~ 550 (569)
++..+.+++ ||+| +||++|.
T Consensus 80 ---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 ---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp ---SCCEEEEECTTCSCCC----CCCE
T ss_pred ---CceEEEEECCCCccCC-CCceEEE
Confidence 333565553 9999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.82 E-value=1.5e-07 Score=96.54 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=62.4
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhcC-
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLH- 475 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~- 475 (569)
+.+||++|... |+|+ |++||+++++. .+.+.|.||.+|++.+.|+++++.+||++|.+.
T Consensus 397 ~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~ 460 (609)
T 4b2g_A 397 KEYELVITTYA---GLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNAS 460 (609)
T ss_dssp CEEEEEEECTT---SCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CeEEEehhhhh---hhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHH
Confidence 78999998753 5664 99999999973 468999999999999999999999999998732
Q ss_pred -----C--CceeeEEEeecCCCCCceeeEEEEec
Q 008342 476 -----P--LVLEAAVVARPDERWGESPCAFVTLK 502 (569)
Q Consensus 476 -----~--~v~~~~v~~~~~~~~g~~~~~~v~~~ 502 (569)
. .|.|..+....... ...-++|+++.
T Consensus 461 ~~l~~~g~~l~eft~~~d~~~~-p~Hyv~~wEl~ 493 (609)
T 4b2g_A 461 KLLREVNTSVVEYTSFADTKTI-PGHYVIYWELL 493 (609)
T ss_dssp HGGGGTTEEEEEEEEEEECSSS-SCEEEEEEEEE
T ss_pred HhhhccCCeEEEEEEecCCCCC-CCcEEEEEEEe
Confidence 2 35676665432222 11234445554
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.80 E-value=6.8e-08 Score=98.87 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=52.0
Q ss_pred CceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcC----CCeEEEecccCceEEeCceeechHHHHHHHhcC
Q 008342 400 KTIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHP----DNYIEIKDRLKDVIISGGENISSVEVEKVLYLH 475 (569)
Q Consensus 400 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (569)
|+.+||++|..+ |.|+ |++||++++.. ..++.|.||.+|++.+.|++++..+||++|.+.
T Consensus 384 G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred CceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 478999999863 4554 99999999985 368999999999999999999999999999754
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.73 E-value=1.3e-07 Score=96.51 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=63.1
Q ss_pred ceEEEEEecCcccccccCCcchhhhhhcCCeeecCceeEEcCC----CeEEEecccCceEEeCceeechHHHHHHHhcC-
Q 008342 401 TIGEIVMRGSCVMKGYLKNPKANEEAFANGWFHSGDLAVKHPD----NYIEIKDRLKDVIISGGENISSVEVEKVLYLH- 475 (569)
Q Consensus 401 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~tGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~- 475 (569)
+.+||++|... |.|+ |++||++++..- ..+.|.||.++++.+.|++++..+||++|.+.
T Consensus 392 ~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~ 455 (581)
T 4epl_A 392 EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAA 455 (581)
T ss_dssp CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHH
T ss_pred CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHH
Confidence 78999999863 5554 999999998742 57999999999999999999999999998742
Q ss_pred -----C--CceeeEEEeecCCCCCceeeEEEEecC
Q 008342 476 -----P--LVLEAAVVARPDERWGESPCAFVTLKP 503 (569)
Q Consensus 476 -----~--~v~~~~v~~~~~~~~g~~~~~~v~~~~ 503 (569)
. .|.|..+....... .-.-++|++...
T Consensus 456 ~~l~~~~~~l~eft~~~d~~~~-p~hyv~~wE~~~ 489 (581)
T 4epl_A 456 KRLSEEKIEVIDFSSYIDVSTD-PGHYAIFWEISG 489 (581)
T ss_dssp HHHHTTTCCEEEEEEEEECSSS-SCEEEEEEEESS
T ss_pred HhhcccCCeEEEEEEecCCCCC-CCcEEEEEeecC
Confidence 2 46677766532221 122344456643
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.93 E-value=0.92 Score=45.15 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=71.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...|+.++|++...++.. ...+...++++..|+..++++. .+.+.+...+++.++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 3589999988888888888788999999999988853 3345567888999999887765 478899999999999999
Q ss_pred EEcccchHHHHH
Q 008342 122 IVDQEFFSLAEE 133 (569)
Q Consensus 122 i~~~~~~~~~~~ 133 (569)
+..+.....+.+
T Consensus 187 ~~~Ps~~~~l~~ 198 (437)
T 2y27_A 187 MVTPSYMLSIAD 198 (437)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988876655544
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.47 E-value=1 Score=44.87 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=71.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 3589999998888888888788999999999988853 33455678888999998887654 78899999999999999
Q ss_pred EEcccchHHHHH
Q 008342 122 IVDQEFFSLAEE 133 (569)
Q Consensus 122 i~~~~~~~~~~~ 133 (569)
+..+.....+.+
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 988876655443
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.26 E-value=1 Score=44.74 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=72.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCc--hhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNV--PAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+...++.++|++...++-+ ...+..+++++..|+..++.+.. ..+.+...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 4589999999888888888888999999999988753 34455678889999998877554 77889999999999999
Q ss_pred EEcccchHHHHHH
Q 008342 122 IVDQEFFSLAEEA 134 (569)
Q Consensus 122 i~~~~~~~~~~~~ 134 (569)
+..+.....+...
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9888766555443
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=78.55 E-value=14 Score=37.15 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=71.0
Q ss_pred CCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchh-HHHHHHHhhhcCceEeeccc
Q 008342 33 HPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA-MYEAQFGAPMAGAVLNSINI 102 (569)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~ 102 (569)
.++.+|++..- -.+|++.+...+..+... .++.++|++...+|-... .+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 56777766531 458999888777665543 478899999988886533 2444678888999888765
Q ss_pred cCCHHHHHHHHhcCCceEEEEcccchHHH
Q 008342 103 RLNATVVAFILSHASSAVVIVDQEFFSLA 131 (569)
Q Consensus 103 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 131 (569)
..+++.+...+++.++.+++..+.....+
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 265 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWL 265 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHH
Confidence 57899999999999999999887765544
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=77.26 E-value=5.8 Score=38.15 Aligned_cols=86 Identities=10% Similarity=-0.070 Sum_probs=62.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCch--hHHHHHHHhhhcCceEeeccccCCHH--------------
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP--AMYEAQFGAPMAGAVLNSINIRLNAT-------------- 107 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 107 (569)
-.+|.+.+...+..++..+...|+.++|++...+|-+. -.+...++++..|+.+++.+ .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 35889989888887777777789999999999988622 23444555588898555543 3333
Q ss_pred ---------HHHHHHhcCCceEEEEcccchHHH
Q 008342 108 ---------VVAFILSHASSAVVIVDQEFFSLA 131 (569)
Q Consensus 108 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 131 (569)
.+..++++.++.+++..+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666789999999999887655443
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=76.59 E-value=12 Score=38.38 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=69.0
Q ss_pred CceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH--HHHHHHhhhcCceEeecccc
Q 008342 35 TRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM--YEAQFGAPMAGAVLNSINIR 103 (569)
Q Consensus 35 ~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 103 (569)
+.+|++..- -.+|.+.+...+......+...++.++|++...+|-...+ ...+++++ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 677776542 4589998877766655443335788999998888765433 33456777 999888775 5
Q ss_pred CCHHHHHHHHhcCCceEEEEcccchHHH
Q 008342 104 LNATVVAFILSHASSAVVIVDQEFFSLA 131 (569)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 131 (569)
.+++.+...+++.++.+++..+.....+
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l 297 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAIL 297 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 7889999999999999999887655443
No 48
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=74.53 E-value=13 Score=37.99 Aligned_cols=85 Identities=11% Similarity=-0.017 Sum_probs=61.0
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 288 (569)
..+|++.+...+..... ..+++++|++...++-+..+ +...++++..|+..+.+ +....+++...++..++++++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 46888888766655444 45899999999988864332 34445555667666666 457788999999999999999
Q ss_pred ehHHHHHHHH
Q 008342 289 AAPVVLNAIA 298 (569)
Q Consensus 289 ~~P~~~~~l~ 298 (569)
..+.....+.
T Consensus 128 ~~~~~~~~~~ 137 (550)
T 3rix_A 128 VSKKGLQKIL 137 (550)
T ss_dssp ECGGGHHHHH
T ss_pred EcHHHHHHHH
Confidence 8876655443
No 49
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=73.97 E-value=23 Score=35.70 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=60.1
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (569)
..+|++.+...+..... ..++.++|++...++-+.. -....++++..|+..+.++ ....+++...+++.++..++
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 108 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV 108 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEE
T ss_pred cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 46899988777655554 4589999999998876432 2334445555666666664 56788999999999999999
Q ss_pred ehHHHHHH
Q 008342 289 AAPVVLNA 296 (569)
Q Consensus 289 ~~P~~~~~ 296 (569)
..+.....
T Consensus 109 ~~~~~~~~ 116 (509)
T 3ivr_A 109 AGTDYRDI 116 (509)
T ss_dssp ECSTTHHH
T ss_pred ECcchhhh
Confidence 98776555
No 50
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=73.29 E-value=29 Score=35.20 Aligned_cols=97 Identities=7% Similarity=-0.025 Sum_probs=70.8
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH--HH-HHHHhhhcCceEeec
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM--YE-AQFGAPMAGAVLNSI 100 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 100 (569)
.|+.+|++.. + -.+|.+.+...+...... .++.++|++...+|-+..+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4566666543 1 458999888777665544 4788899998888865433 32 478888999988876
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHH
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEE 133 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (569)
+ ...++.+...+++.++.+++..+.....+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 288 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMD 288 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence 4 5688999999999999999988776554443
No 51
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=72.35 E-value=33 Score=34.86 Aligned_cols=85 Identities=7% Similarity=-0.056 Sum_probs=60.2
Q ss_pred ceeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEE
Q 008342 212 GVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHF 287 (569)
Q Consensus 212 ~v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l 287 (569)
...+|++.+...+..... ..++.++|++...++-+.. .....++++..|+..+.+ +....+++...+++.++..+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 346888887766655444 4589999999998886432 233444555566666666 45678899999999999999
Q ss_pred eehHHHHHHH
Q 008342 288 CAAPVVLNAI 297 (569)
Q Consensus 288 ~~~P~~~~~l 297 (569)
+..+.....+
T Consensus 124 i~~~~~~~~~ 133 (541)
T 1v25_A 124 LFDPNLLPLV 133 (541)
T ss_dssp EECGGGHHHH
T ss_pred EEChhHHHHH
Confidence 9987765544
No 52
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=70.55 E-value=28 Score=35.44 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=70.4
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH--HH-HHHHhhhcCceEeec
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM--YE-AQFGAPMAGAVLNSI 100 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 100 (569)
.++.+|++.. + -.+|.+.+...+...+.. .++.++|++...+|....+ .. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 3566676543 1 458999988777766554 4788999999988865433 22 467888899987766
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHH
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAE 132 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (569)
+ ...+..+...+++.++.+++..+.....+.
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 4 467888999999999999998877655443
No 53
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=70.53 E-value=41 Score=29.29 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=53.7
Q ss_pred EEEEcCCc-cchhhHHHHHHHHHhcceEEEe--ccCChHHHHHHHHhcCccEEee------hHHH--HHHHHccCCCCCC
Q 008342 238 VFLWTLPM-FHGNGWSYTWSLAALCGTSICL--RQVTAKAVYTAIATHGVTHFCA------APVV--LNAIANASPEDTI 306 (569)
Q Consensus 238 ~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~------~P~~--~~~l~~~~~~~~~ 306 (569)
+++...+- .|..|....-..+-..|--++. ....++++.+.+++++++++.. ++.+ +..+.+......
T Consensus 95 vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~- 173 (215)
T 3ezx_A 95 AITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK- 173 (215)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT-
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC-
Confidence 34444433 6888887666666666655544 3467899999999999997777 2221 222222221111
Q ss_pred CCc-ccceeeeecCCCCCHHHHHHh
Q 008342 307 LPL-TNVVNVNTAGAPPPPSLLFAM 330 (569)
Q Consensus 307 ~~l-~~l~~~~~~g~~l~~~~~~~~ 330 (569)
+ ..+ .+++||.+++++..+.+
T Consensus 174 --~~~~v-~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 174 --LRDSV-KCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp --CGGGS-EEEEESSSCCHHHHHHH
T ss_pred --CCCCC-EEEEECCCCCHHHHHHh
Confidence 1 123 37899999998765543
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=69.58 E-value=24 Score=35.85 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=59.0
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~ 288 (569)
-.+|++.+...+..... ..+++++|++...++-+.. .....++++..|+..+.+ +....+++...+++.++..++
T Consensus 48 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i 126 (536)
T 3ni2_A 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126 (536)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEE
T ss_pred CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEE
Confidence 45788888766655444 4589999999998886432 233444555566666666 456788999999999999999
Q ss_pred ehHHHHHHH
Q 008342 289 AAPVVLNAI 297 (569)
Q Consensus 289 ~~P~~~~~l 297 (569)
..+.....+
T Consensus 127 ~~~~~~~~~ 135 (536)
T 3ni2_A 127 TQACYYEKV 135 (536)
T ss_dssp ECGGGTHHH
T ss_pred EChHHHHHH
Confidence 876554433
No 55
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=68.97 E-value=27 Score=35.29 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH--HHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM--YEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
-.+|.+.+...+..++..+ ++.++|++...+|-.... ...+++++ .|+..+.. +......+...+++.++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 4589998887776665544 789999999988875433 22345555 88887766 56789999999999999999
Q ss_pred EEcccchHHHH
Q 008342 122 IVDQEFFSLAE 132 (569)
Q Consensus 122 i~~~~~~~~~~ 132 (569)
+..+.....+.
T Consensus 263 ~~~P~~~~~l~ 273 (517)
T 3r44_A 263 GAVPAILNFMR 273 (517)
T ss_dssp EECHHHHHHHH
T ss_pred EeHHHHHHHHH
Confidence 98877655443
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=67.79 E-value=39 Score=34.31 Aligned_cols=85 Identities=8% Similarity=0.019 Sum_probs=60.2
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (569)
-.+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.++ ....+++...+++.+++.++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i 129 (549)
T 3g7s_A 51 ESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLV 129 (549)
T ss_dssp SEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEE
Confidence 46788887766655444 45899999999988764322 334445555666666664 56788999999999999999
Q ss_pred ehHHHHHHHH
Q 008342 289 AAPVVLNAIA 298 (569)
Q Consensus 289 ~~P~~~~~l~ 298 (569)
..+.....+.
T Consensus 130 ~~~~~~~~~~ 139 (549)
T 3g7s_A 130 VHSMLYENFK 139 (549)
T ss_dssp EEGGGHHHHH
T ss_pred EChHHHHHHH
Confidence 8876655443
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.67 E-value=27 Score=35.87 Aligned_cols=97 Identities=6% Similarity=-0.030 Sum_probs=70.4
Q ss_pred CCCceeeeeCC---------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH--HHHHHHhhhcCceEeecc
Q 008342 33 HPTRKSVVYGS---------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM--YEAQFGAPMAGAVLNSIN 101 (569)
Q Consensus 33 ~p~~~a~~~~~---------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~ 101 (569)
.|+.+|++..- -.+|.+.+...+...+.. .++.++|++...+|-...+ ...+++++..|+..+.++
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 46677766531 459999988877766554 4788999999988876543 233688889999888776
Q ss_pred ccC---CHHHHHHHHhcCCceEEEEcccchHHHH
Q 008342 102 IRL---NATVVAFILSHASSAVVIVDQEFFSLAE 132 (569)
Q Consensus 102 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (569)
+.. .+..+...+++.++.++...+.....+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 532 5778889999999999887765544433
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=66.86 E-value=18 Score=36.51 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=69.0
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH-HHHHHHhhhcCceEeeccc
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM-YEAQFGAPMAGAVLNSINI 102 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 102 (569)
.++.+|++.. + -.+|++.+...+...... .++.++|++...+|-+... +..+++++..|+..+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566665542 2 458998888766655443 5788999999988876433 4567888999999888765
Q ss_pred c--CCHHHHHHHHhcCCceEEEEcccchH
Q 008342 103 R--LNATVVAFILSHASSAVVIVDQEFFS 129 (569)
Q Consensus 103 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (569)
. ..+..+...+++.++.+++..+....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 247 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAE 247 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHH
Confidence 3 56788999999999999988776543
No 59
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=64.85 E-value=30 Score=32.96 Aligned_cols=81 Identities=19% Similarity=-0.052 Sum_probs=56.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchh-HHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEE
Q 008342 44 KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPA-MYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 122 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 122 (569)
-.+|++.+...+..++.. .+++++|++...+|-... .+..++..+..|+..+..++... ....+++.++.++.
T Consensus 55 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEE
Confidence 459999988777665554 478999999998886533 24445666777877776665533 24567888999888
Q ss_pred EcccchHH
Q 008342 123 VDQEFFSL 130 (569)
Q Consensus 123 ~~~~~~~~ 130 (569)
..+.....
T Consensus 129 ~~P~~l~~ 136 (358)
T 4gs5_A 129 MVPMQLQS 136 (358)
T ss_dssp ECHHHHHH
T ss_pred cChHHHHH
Confidence 77654433
No 60
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=63.31 E-value=58 Score=32.58 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=58.6
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (569)
..+|++.+...+..... ..++.++|++...++-+..+ ....++++..|+..+.++ ...++++...+++.+++.++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 56899888766655444 45899999999988865332 344455566677666664 46788999999999999998
Q ss_pred e--hHHHHHHH
Q 008342 289 A--APVVLNAI 297 (569)
Q Consensus 289 ~--~P~~~~~l 297 (569)
. .+.....+
T Consensus 107 ~~~~~~~~~~~ 117 (504)
T 1t5h_X 107 IAVGRQVADAI 117 (504)
T ss_dssp ECC--CHHHHH
T ss_pred Eecchhhhhhh
Confidence 8 65555444
No 61
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=63.23 E-value=52 Score=33.76 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=63.4
Q ss_pred CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-c
Q 008342 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 268 (569)
Q Consensus 193 ~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~ 268 (569)
.++.++++..... | ....+|.+.+......... ..+++++|++...++-+.-+ +...++++..|+..+.+ +
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 3556777654321 2 2456888887666655444 45899999999988865332 33444555566666655 4
Q ss_pred cCChHHHHHHHHhcCccEEeehH
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAP 291 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P 291 (569)
...++++...+++.++..++..+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 57788999999999999998744
No 62
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=62.77 E-value=51 Score=34.12 Aligned_cols=97 Identities=16% Similarity=0.084 Sum_probs=70.1
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCch--hHHH-HHHHhhhcCceEeec
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP--AMYE-AQFGAPMAGAVLNSI 100 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~-~~lA~~~~G~~~v~l 100 (569)
.++.+|++.. + -.+|.+.+...+......+ ++.++|++...+|-+. .+.. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3566666542 1 4589998887776665544 6889999999888543 3332 467888889887776
Q ss_pred cccCCHHHHHHHHhcCCceEEEEcccchHHHHH
Q 008342 101 NIRLNATVVAFILSHASSAVVIVDQEFFSLAEE 133 (569)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (569)
+ ......+...+++.++.++...+.....+..
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHH
Confidence 5 4578888899999999999988876555443
No 63
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=62.27 E-value=23 Score=35.67 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=68.7
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH-HHHHHHhhhcCceEeeccc
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM-YEAQFGAPMAGAVLNSINI 102 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 102 (569)
.++.+|++.. + -.+|.+.+...+..++.. .++.++|++...+|-+... +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4556666542 2 458998887776655443 5788899999988876433 4457888999998887755
Q ss_pred c--CCHHHHHHHHhcCCceEEEEcccchH
Q 008342 103 R--LNATVVAFILSHASSAVVIVDQEFFS 129 (569)
Q Consensus 103 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (569)
. ..+..+...+++.++.+++..+....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~ 246 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQ 246 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHH
Confidence 3 56788999999999999998876543
No 64
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=61.25 E-value=34 Score=35.06 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=59.9
Q ss_pred eeecchHHHHHHHHhHh---Hh-CCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEE
Q 008342 213 VVVSHRGAYLMSLNGAL---IW-GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHF 287 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l 287 (569)
..+|++.+...+..... .. +++++|++...++-+..+ +...++++..|+..+.++ ...++++...+++.++..+
T Consensus 72 ~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 72 LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp EEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred eEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 56888888766655444 33 889999999988865322 334455555666666664 4678899999999999999
Q ss_pred eehHHHHHHHH
Q 008342 288 CAAPVVLNAIA 298 (569)
Q Consensus 288 ~~~P~~~~~l~ 298 (569)
+..+.....+.
T Consensus 151 i~~~~~~~~~~ 161 (570)
T 3c5e_A 151 VAGDEVIQEVD 161 (570)
T ss_dssp EEETTTHHHHH
T ss_pred EechHHHHHHH
Confidence 98776655543
No 65
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=60.30 E-value=58 Score=30.61 Aligned_cols=91 Identities=7% Similarity=-0.034 Sum_probs=55.9
Q ss_pred CCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHH
Q 008342 34 PTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVA 110 (569)
Q Consensus 34 p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (569)
+.++.+-.++ .+=+|++-. ....+. .+.+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+..-.
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~-a~~~i~-~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL-GFAIYD-KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH-HHHHHH-HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH-HHHHHH-HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 3456665554 333454431 122222 334455 48888864444555666777778888898766665554445556
Q ss_pred HHHhcCCceEEEEccc
Q 008342 111 FILSHASSAVVIVDQE 126 (569)
Q Consensus 111 ~~l~~~~~~~vi~~~~ 126 (569)
..++.+++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7789999999999764
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.05 E-value=59 Score=33.14 Aligned_cols=84 Identities=5% Similarity=-0.033 Sum_probs=59.2
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (569)
-.+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.++ ....+++...+++.++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 36888888766655444 45899999999888765322 334445555666666664 46778999999999999999
Q ss_pred ehHHHHHHH
Q 008342 289 AAPVVLNAI 297 (569)
Q Consensus 289 ~~P~~~~~l 297 (569)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 887655443
No 67
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.57 E-value=66 Score=31.77 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=68.5
Q ss_pred cCceEEEEeccCCCCCCcceeecchHHHHHHHHhHhHh---CCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEecc-
Q 008342 194 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGALIW---GMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ- 269 (569)
Q Consensus 194 ~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~- 269 (569)
++.++++.........-....+|++.+...+......+ +. ++|++...++-+..+ ....++++..|+..+.+..
T Consensus 38 pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~~ 115 (480)
T 3t5a_A 38 PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSVP 115 (480)
T ss_dssp TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECSC
T ss_pred CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCCC
Confidence 44566665432111111336789998877776665544 54 899999888764322 3344555566666666643
Q ss_pred ---CChHHHHHHHHhcCccEEeehHHHHHHHHcc
Q 008342 270 ---VTAKAVYTAIATHGVTHFCAAPVVLNAIANA 300 (569)
Q Consensus 270 ---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 300 (569)
...+++...+++.++..++..+.....+...
T Consensus 116 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 116 QGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 4568899999999999999988877766554
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=59.41 E-value=36 Score=34.36 Aligned_cols=82 Identities=6% Similarity=-0.147 Sum_probs=58.1
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEe
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFC 288 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (569)
..+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.++ ...++++...+++.++..++
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 125 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEE
Confidence 35788887766655444 45899999999988865432 334455556666666664 46788999999999999998
Q ss_pred ehHHHHH
Q 008342 289 AAPVVLN 295 (569)
Q Consensus 289 ~~P~~~~ 295 (569)
..+....
T Consensus 126 ~~~~~~~ 132 (529)
T 2v7b_A 126 ASGALVQ 132 (529)
T ss_dssp EEGGGHH
T ss_pred echhhhh
Confidence 8766544
No 69
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=58.18 E-value=71 Score=33.27 Aligned_cols=93 Identities=15% Similarity=0.039 Sum_probs=62.8
Q ss_pred CceEEEEeccCCCCCCcceeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccC
Q 008342 195 WQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQV 270 (569)
Q Consensus 195 ~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~ 270 (569)
+.++++.. +..+| ....+|++.+...+..... ..|++++|++...+|.+.-+ ....++++..|+..+.+ +.+
T Consensus 91 d~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~~~ 166 (652)
T 1pg4_A 91 DRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFGGF 166 (652)
T ss_dssp TSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTTS
T ss_pred CceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCCCC
Confidence 45566543 22222 2356888888766655444 45899999999999875332 34455555667666666 457
Q ss_pred ChHHHHHHHHhcCccEEeehH
Q 008342 271 TAKAVYTAIATHGVTHFCAAP 291 (569)
Q Consensus 271 ~~~~~~~~i~~~~~t~l~~~P 291 (569)
.++++...+++.++.+++...
T Consensus 167 ~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 167 SPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CHHHHHHHHHHHTCSEEEEES
T ss_pred CHHHHHHHHHhcCCCEEEEcC
Confidence 889999999999999888753
No 70
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=52.89 E-value=66 Score=33.65 Aligned_cols=95 Identities=7% Similarity=0.030 Sum_probs=63.9
Q ss_pred cCceEEEEeccCCCCCCcceeecchHHHHHHHHhH---h-HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-c
Q 008342 194 EWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGA---L-IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 268 (569)
Q Consensus 194 ~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~---~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~ 268 (569)
++.++++... ..+| ....+|++.+...+.... . ..|++++|++...+|...-+ ....++++..|+..+.+ +
T Consensus 96 pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~~ 171 (663)
T 1ry2_A 96 PNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVFA 171 (663)
T ss_dssp TTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 4556666432 2222 234688888766654433 3 56789999999999875332 34455556667666666 5
Q ss_pred cCChHHHHHHHHhcCccEEeehHH
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAPV 292 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~ 292 (569)
.+.++++...+++.++.+++....
T Consensus 172 ~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 172 GFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCHHHHHHHHHhcCCeEEEEccc
Confidence 678899999999999999988543
No 71
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=52.01 E-value=91 Score=31.75 Aligned_cols=79 Identities=10% Similarity=-0.026 Sum_probs=56.3
Q ss_pred eecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEee
Q 008342 214 VVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCA 289 (569)
Q Consensus 214 ~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~ 289 (569)
.+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.+ +....+++...+++.++..++.
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 178 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT 178 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence 5888887666655444 45899999999988764322 33444555566666666 4567889999999999999988
Q ss_pred hHHH
Q 008342 290 APVV 293 (569)
Q Consensus 290 ~P~~ 293 (569)
....
T Consensus 179 ~~~~ 182 (570)
T 4gr5_A 179 SRPL 182 (570)
T ss_dssp CTTT
T ss_pred cchh
Confidence 6543
No 72
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=51.88 E-value=52 Score=32.96 Aligned_cols=79 Identities=11% Similarity=-0.063 Sum_probs=56.5
Q ss_pred eecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEec-cCChHHHHHHHHhcCccEEee
Q 008342 214 VVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLR-QVTAKAVYTAIATHGVTHFCA 289 (569)
Q Consensus 214 ~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 289 (569)
.+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.++ ....+++...+++.++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5788888766655444 45899999999988865322 334445555666666664 467889999999999999998
Q ss_pred hHHH
Q 008342 290 APVV 293 (569)
Q Consensus 290 ~P~~ 293 (569)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 73
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=50.47 E-value=58 Score=32.60 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=67.8
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCch--hHHHHHHHhhhcCceEeecc
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVP--AMYEAQFGAPMAGAVLNSIN 101 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~ 101 (569)
.++.+|++.. + -.+|.+.+...+..++..+ ++.++|++...+|-.. .++..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 4566666542 2 4589999988887776655 7788999988777543 2234568888999988766
Q ss_pred ccCCHHHHHHHHhcCCceEEEEcccchHHHH
Q 008342 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAE 132 (569)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (569)
+....+.+...+ +.++.+++..+.....+.
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~ 258 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIA 258 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHHHHHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHHHHHHH
Confidence 456777777777 678999888776555443
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=48.33 E-value=96 Score=34.18 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=64.4
Q ss_pred CcCceEEEEeccCCCCCCcceeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-c
Q 008342 193 DEWQSIALGYTSGTTASPKGVVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-R 268 (569)
Q Consensus 193 ~~~~~~~i~~TSGsTG~pk~v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~ 268 (569)
.++.++++... + +..+|++.+...+..... ..+++++|++...++-+. --+...++++..|+..+.+ +
T Consensus 74 ~pd~~Al~~~~---~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---T----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---T----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---C----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 34566665422 2 246788887766655444 458999999999888653 2234445555667766666 4
Q ss_pred cCChHHHHHHHHhcCccEEeehHHHH
Q 008342 269 QVTAKAVYTAIATHGVTHFCAAPVVL 294 (569)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~P~~~ 294 (569)
...++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 57789999999999999999876543
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.50 E-value=82 Score=29.72 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=59.2
Q ss_pred CCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 34 PTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 34 p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.-++++-.++ .+=||++ +-....+.....+--+++|.+..+.....-.-..+.++|.+.|..+..+-|...+..-..
T Consensus 49 G~~IylK~E~lnptGSfK~-RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 49 GAYVAVKQEMMQPTASIAD-RPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp CSEEEEEEGGGSTTSBTTH-HHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CCEEEEEecCCCCCCCcHH-HHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 3456665554 3445543 222333444333333577876556666667777788888999987666666655566677
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++.+++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999998754
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=44.06 E-value=69 Score=33.17 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=68.0
Q ss_pred CCCceeeeeC--C-------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH-HHHHHHhhhcCceEeecc-
Q 008342 33 HPTRKSVVYG--S-------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM-YEAQFGAPMAGAVLNSIN- 101 (569)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~- 101 (569)
.|+.+|++.. + -.+|.+.+...+.. ....++.++|++...+|-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 3667776543 1 45888877543322 2345788999999988876543 445678888898877653
Q ss_pred ccCCHHHHHHHHhcCCceEEEEcccchHHHH
Q 008342 102 IRLNATVVAFILSHASSAVVIVDQEFFSLAE 132 (569)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (569)
...++..+...+++.++.+++..+.....+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 3567899999999999999998877655443
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=43.11 E-value=75 Score=31.85 Aligned_cols=77 Identities=9% Similarity=-0.167 Sum_probs=54.7
Q ss_pred eecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-ccCChHHHHHHHHhcCccEEee
Q 008342 214 VVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL-RQVTAKAVYTAIATHGVTHFCA 289 (569)
Q Consensus 214 ~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~ 289 (569)
.+|++.+...+..... ..++.++|++...++-+.. -+...++++..|+..+.+ +...++++...+++.+++.++.
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYD-MLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHH-HHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 4788888766655444 4588999999888876432 234445555667666666 4577889999999999998886
Q ss_pred hH
Q 008342 290 AP 291 (569)
Q Consensus 290 ~P 291 (569)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 78
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=42.14 E-value=1.1e+02 Score=28.66 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=52.4
Q ss_pred eeeHHHHHHHHHHH--H-HHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEE
Q 008342 45 HYTWHQTYRRCRRF--A-SALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVV 121 (569)
Q Consensus 45 ~~Ty~el~~~~~~l--a-~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 121 (569)
.+++.+........ | +.|...++++|++|+|....+.-.+.++++....|+.++.++.. .++ ..+.+..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 46776654333222 2 33555689999999999887777787888777778776666543 343 456777888888
Q ss_pred EEccc
Q 008342 122 IVDQE 126 (569)
Q Consensus 122 i~~~~ 126 (569)
|-..+
T Consensus 213 i~~~~ 217 (348)
T 4eez_A 213 INSGD 217 (348)
T ss_dssp EEC-C
T ss_pred EeCCC
Confidence 75443
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=40.11 E-value=1.2e+02 Score=30.71 Aligned_cols=84 Identities=7% Similarity=-0.074 Sum_probs=58.5
Q ss_pred eeecchHHHHHHHHhHh---HhCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEecc-CC-------hHHHHHHHHh
Q 008342 213 VVVSHRGAYLMSLNGAL---IWGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICLRQ-VT-------AKAVYTAIAT 281 (569)
Q Consensus 213 v~~t~~~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~i~~ 281 (569)
-.+|++.+...+..... ..+++++|++...++-+..+ ....++++..|+..+.+.. .. ..++...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 46888888776655444 45899999999988865322 3444555666766666643 33 5788889999
Q ss_pred cCccEEeehHHHHHHH
Q 008342 282 HGVTHFCAAPVVLNAI 297 (569)
Q Consensus 282 ~~~t~l~~~P~~~~~l 297 (569)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999877655443
No 80
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=36.83 E-value=2.4e+02 Score=25.82 Aligned_cols=89 Identities=4% Similarity=-0.093 Sum_probs=51.2
Q ss_pred CceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 35 TRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.++.+-.++ .+-+|++-.. ..+...+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554433 3445554322 222233344453 66776655 34444455566677788987666555444444566
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++.+++++++++.+
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 788999999999864
No 81
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=36.37 E-value=1.1e+02 Score=28.61 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.6
Q ss_pred cCCCCCCEEEEEcCCc
Q 008342 65 LSIGLGTTVSVIAPNV 80 (569)
Q Consensus 65 ~g~~~g~~V~i~~~~~ 80 (569)
.-+++||+|+|++|.+
T Consensus 7 ~~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 7 AKLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCCTTCEEEEECSSS
T ss_pred CCCCCCCEEEEEeCCC
Confidence 3578999999999985
No 82
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=35.65 E-value=1e+02 Score=29.45 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.8
Q ss_pred cCCCCCCEEEEEcCCch
Q 008342 65 LSIGLGTTVSVIAPNVP 81 (569)
Q Consensus 65 ~g~~~g~~V~i~~~~~~ 81 (569)
.-+++||+|+|++|.+.
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 46899999999999874
No 83
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=35.49 E-value=2.6e+02 Score=25.77 Aligned_cols=91 Identities=15% Similarity=0.031 Sum_probs=52.2
Q ss_pred CCceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHH
Q 008342 34 PTRKSVVYGS--KHYTWHQTYRRCRRFASALSKLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVA 110 (569)
Q Consensus 34 p~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 110 (569)
..++.+-.++ .+-||++-.. ...+.. +.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-.
T Consensus 29 g~~v~~K~E~~~ptGSfK~R~a-~~~l~~-a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 106 (322)
T 1z7w_A 29 VGRVAAKLEMMEPCSSVKDRIG-FSMISD-AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106 (322)
T ss_dssp SSEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CceEEEEecccCCCCchHHHHH-HHHHHH-HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 3456665544 2334443321 222333 33455 45664333334455555666677889998766655544445556
Q ss_pred HHHhcCCceEEEEccc
Q 008342 111 FILSHASSAVVIVDQE 126 (569)
Q Consensus 111 ~~l~~~~~~~vi~~~~ 126 (569)
..++.+++++++++.+
T Consensus 107 ~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 107 IILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 7888999999998864
No 84
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=35.28 E-value=1.4e+02 Score=22.32 Aligned_cols=62 Identities=13% Similarity=-0.072 Sum_probs=35.8
Q ss_pred hHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC
Q 008342 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 465 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 526 (569)
...|.+.+.++|+|.++-=+-.......-.+.+-|++.+............++.+.+++.++
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45688888899998876443332222122344556665554333333466777777777765
No 85
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.96 E-value=2.7e+02 Score=25.49 Aligned_cols=89 Identities=9% Similarity=-0.077 Sum_probs=50.9
Q ss_pred CceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 35 TRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.++.+-.++ ..-+|++-... ..+. .+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a~-~~l~-~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIAL-AMIE-AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHHH-HHHH-HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 455554443 33455433221 2222 2334453 66666554 44444555666777788987666555433444556
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++.+++++++++.+
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 778999999999864
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=33.85 E-value=1.3e+02 Score=28.29 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=14.0
Q ss_pred CCCCCCEEEEEcCCch
Q 008342 66 SIGLGTTVSVIAPNVP 81 (569)
Q Consensus 66 g~~~g~~V~i~~~~~~ 81 (569)
-+++||+|+|++|.+.
T Consensus 9 ~L~~GD~I~ivaPSs~ 24 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSP 24 (336)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCCCEEEEEeCCCC
Confidence 5789999999999874
No 87
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=33.59 E-value=2.2e+02 Score=24.21 Aligned_cols=96 Identities=2% Similarity=-0.025 Sum_probs=49.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHh-------cCCCCCCEEEEEcCCc----hhHHHHHHHhhhcCceEeeccccCCHHHHHHH
Q 008342 44 KHYTWHQTYRRCRRFASALSK-------LSIGLGTTVSVIAPNV----PAMYEAQFGAPMAGAVLNSINIRLNATVVAFI 112 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la~~L~~-------~g~~~g~~V~i~~~~~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 112 (569)
..++-.|+...+..+-..+.. ..-..+.+|.+....+ +...++...+-..|..++.+..+.+.+.+...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 455656655544444333322 1112233666655442 34455555666789999999999999999999
Q ss_pred HhcCCceEEEEcccc---hHHHHHHHHHHh
Q 008342 113 LSHASSAVVIVDQEF---FSLAEEALKMME 139 (569)
Q Consensus 113 l~~~~~~~vi~~~~~---~~~~~~~~~~~~ 139 (569)
++..+|++|..+... ...+.+..+.+.
T Consensus 135 ~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~ 164 (210)
T 1y80_A 135 VKKYQPDIVGMSALLTTTMMNMKSTIDALI 164 (210)
T ss_dssp HHHHCCSEEEEECCSGGGTHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeccccccHHHHHHHHHHHH
Confidence 999999999987543 334444444443
No 88
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=33.03 E-value=1.3e+02 Score=28.14 Aligned_cols=79 Identities=9% Similarity=0.080 Sum_probs=50.6
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceE
Q 008342 44 KHYTWHQTYRRCRR---FASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120 (569)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (569)
..+++.+....... .-+.|...++++|++|+|.....+..+++.+|-. .|+.++.++. +.+.+ .++++.+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 34677665422211 1234555689999999998876677777777764 5887665543 34444 3567788888
Q ss_pred EEEccc
Q 008342 121 VIVDQE 126 (569)
Q Consensus 121 vi~~~~ 126 (569)
++...+
T Consensus 214 ~i~~~~ 219 (340)
T 3s2e_A 214 AVNARD 219 (340)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 875543
No 89
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=32.95 E-value=1e+02 Score=29.42 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc-----CCHHHHHHHHhcCC--ceEEEEc
Q 008342 62 LSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-----LNATVVAFILSHAS--SAVVIVD 124 (569)
Q Consensus 62 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~~ 124 (569)
|...++++||.|.+-.+....+. -++...|+.++.++.+ .+.+.+...+..-+ .++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34446788888887666554432 3455667766665432 35677777664334 6666644
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=32.90 E-value=2.7e+02 Score=26.03 Aligned_cols=89 Identities=9% Similarity=-0.035 Sum_probs=51.0
Q ss_pred CceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 35 TRKSVVYGS--KHYTWHQTYRRCRRFASALSKLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.++.+-.++ .+=+|++-.. ...+.. +.+.| +++|+.|..... +-.-..+.++|...|..++.+-|...+..-..
T Consensus 42 ~~v~~K~E~~~ptGSfKdR~a-~~~l~~-a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 118 (343)
T 2pqm_A 42 TRILVKLEYFNPMSSVKDRVG-FNIVYQ-AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQM 118 (343)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred cEEEEEeccCCCCCChHHHHH-HHHHHH-HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 345554443 3444444322 222333 33334 467776665544 44445555667778886666555434445566
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++..++++++++..
T Consensus 119 ~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 119 IMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 888999999999864
No 91
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=32.67 E-value=2.4e+02 Score=28.40 Aligned_cols=95 Identities=6% Similarity=-0.128 Sum_probs=59.0
Q ss_pred cCceEEEEeccCCCCCC--cceeecchHHHHHHHHhHhH---hCCCCCcEEEEcCCccchhhHHHHHHHHHhcceEEEe-
Q 008342 194 EWQSIALGYTSGTTASP--KGVVVSHRGAYLMSLNGALI---WGMNEGAVFLWTLPMFHGNGWSYTWSLAALCGTSICL- 267 (569)
Q Consensus 194 ~~~~~~i~~TSGsTG~p--k~v~~t~~~~~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~- 267 (569)
++.++++.. .+..+.. ..-.+|++.+...+...... .+. ++|++...++-+..+ +...++++..|+..+.+
T Consensus 34 p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl~ 110 (562)
T 3ite_A 34 PEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPIE 110 (562)
T ss_dssp TTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecC
Confidence 445565543 2222222 23568888877666555443 466 799999888765332 33444555566666666
Q ss_pred ccCChHHHHHHHHhcCccEEeehH
Q 008342 268 RQVTAKAVYTAIATHGVTHFCAAP 291 (569)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~P 291 (569)
+....+++...+++.++..++...
T Consensus 111 ~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 111 AGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CcCHHHHHHHHHHhcCCCEEEEcc
Confidence 456788999999999998877653
No 92
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=32.36 E-value=3e+02 Score=25.75 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=35.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc-------CCHHHHHHHHhcCCceEEEEc
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-------LNATVVAFILSHASSAVVIVD 124 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 124 (569)
+++||.|.+..+....+ ..++...|+.++.++.. ...+.+...++..++++|++.
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46788887766554442 23445667766666542 667888888876677777653
No 93
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=31.88 E-value=3e+02 Score=25.09 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=40.9
Q ss_pred HhcC-CCCCC--EEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 63 SKLS-IGLGT--TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 63 ~~~g-~~~g~--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++.+
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 46666 4444 33444555566777799987666555434455566788999999999865
No 94
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=31.63 E-value=1.4e+02 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHh--cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 61 ALSK--LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 61 ~L~~--~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
.|.+ .++++|++|+|.....+..+++.+|-...|+.++.++. +.+++ .++++.+++.++...+
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETTS
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEeccc
Confidence 3555 68999999999999777777777776544876555543 34443 3456788888875443
No 95
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=31.16 E-value=2e+02 Score=26.74 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=50.8
Q ss_pred eeHHHHHHHHHH---HHHHHHhc--CCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceE
Q 008342 46 YTWHQTYRRCRR---FASALSKL--SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120 (569)
Q Consensus 46 ~Ty~el~~~~~~---la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (569)
+++.+....... ..+.|.+. ++++|++|+|........+++.+|-..-|+.++.++. +.++ ..++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 777665533221 12334443 7899999999988777888888887665666665543 3444 34567788988
Q ss_pred EEEccc
Q 008342 121 VIVDQE 126 (569)
Q Consensus 121 vi~~~~ 126 (569)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 886544
No 96
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=31.00 E-value=1.4e+02 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.9
Q ss_pred CCCCCCEEEEEcCCch
Q 008342 66 SIGLGTTVSVIAPNVP 81 (569)
Q Consensus 66 g~~~g~~V~i~~~~~~ 81 (569)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999999875
No 97
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=30.39 E-value=1.4e+02 Score=28.19 Aligned_cols=59 Identities=8% Similarity=0.011 Sum_probs=39.4
Q ss_pred CCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchH
Q 008342 70 GTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFS 129 (569)
Q Consensus 70 g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (569)
.+.|.-. ..+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++.....
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~ 134 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDES 134 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 3444333 3344556666778888986666655545555677889999999999876543
No 98
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=30.07 E-value=3.9e+02 Score=25.94 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=44.1
Q ss_pred HhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 63 SKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 63 ~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
.+.|. ++|....+....+-.-..+.++|.+.|..++.+-|......-...++.+++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34564 6775544445556666777778888898776665555555667788999999999975
No 99
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=29.98 E-value=1e+02 Score=21.55 Aligned_cols=47 Identities=28% Similarity=0.220 Sum_probs=31.1
Q ss_pred hHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC
Q 008342 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 465 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 526 (569)
..++++.|.+.|+|.+|..+.-+.+ ..+.+... +.+++.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~~----------d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVETD----------TLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEES----------SHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEEC----------CHHHHHHHHHHHhc
Confidence 4789999999999999988653222 45555443 23566666665543
No 100
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=27.95 E-value=3.5e+02 Score=24.64 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=51.6
Q ss_pred CceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 35 TRKSVVYGS--KHYTWHQTYRRCRRFASALSKLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.++.+..++ .+-||++-.. ...+.. +.+.| +++|+.|..... +-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 25 ~~v~~K~E~~~ptGSfK~R~a-~~~i~~-a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 101 (303)
T 2v03_A 25 SEVWLKLEGNNPAGSVKDRAA-LSMIVE-AEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRA 101 (303)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCCcHHHHH-HHHHHH-HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554443 3344444322 222333 33345 366776666553 44445556667789987666655544445567
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++.+++++++++.+
T Consensus 102 ~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 102 AMRAYGAELILVTKE 116 (303)
T ss_dssp HHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEECCC
Confidence 888999999999863
No 101
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=27.63 E-value=1.4e+02 Score=27.52 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=48.5
Q ss_pred eeeHHHHHHHHHH--HH-HHHHhcCCCCCCEEEEEc-CCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceE
Q 008342 45 HYTWHQTYRRCRR--FA-SALSKLSIGLGTTVSVIA-PNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120 (569)
Q Consensus 45 ~~Ty~el~~~~~~--la-~~L~~~g~~~g~~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (569)
.+++.+....... .| +.|...++++|++|+|.. ...+..+++.+|- ..|+.++.+. +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677766543222 12 334557899999999996 5566777776665 4588655543 3444 55677788887
Q ss_pred EEEcc
Q 008342 121 VIVDQ 125 (569)
Q Consensus 121 vi~~~ 125 (569)
++...
T Consensus 200 ~i~~~ 204 (321)
T 3tqh_A 200 CINYH 204 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77543
No 102
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=27.46 E-value=1.9e+02 Score=28.09 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=27.3
Q ss_pred EEEcCCchhHHH-HHHHhhhcCceEeeccccCCHH--HHHHHHhcCCceEEEEcccc
Q 008342 74 SVIAPNVPAMYE-AQFGAPMAGAVLNSINIRLNAT--VVAFILSHASSAVVIVDQEF 127 (569)
Q Consensus 74 ~i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~ 127 (569)
+++..++.+.+. ++.++...|-.++..++.+... .+...++..++++++++...
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d 156 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMD 156 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCC
Confidence 344455554443 3345556665555445554432 12225566677777766543
No 103
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=27.41 E-value=1.5e+02 Score=27.76 Aligned_cols=75 Identities=12% Similarity=-0.045 Sum_probs=46.9
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceE
Q 008342 44 KHYTWHQTYRRCRR---FASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAV 120 (569)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 120 (569)
..+++.+....... .-+.|.+.++++|++|+|.....+..+++.+|- ..|+.++.+.... +++ .++++.+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCe
Confidence 34677665422111 123455668999999999987666777777765 4588766655432 232 2456678887
Q ss_pred EE
Q 008342 121 VI 122 (569)
Q Consensus 121 vi 122 (569)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 104
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=26.93 E-value=1.3e+02 Score=28.28 Aligned_cols=79 Identities=10% Similarity=0.042 Sum_probs=48.7
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhcCCC-CCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCce
Q 008342 44 KHYTWHQTYRRCRR---FASALSKLSIG-LGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSA 119 (569)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~g~~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 119 (569)
..+++.+....... .-+.|.+.+++ +|++|+|.....+..+++.+|-. .|+.++.+... .+++..+.+..+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 34677664321111 11335566888 99999999876677777777664 58765555433 44555555578888
Q ss_pred EEEEcc
Q 008342 120 VVIVDQ 125 (569)
Q Consensus 120 ~vi~~~ 125 (569)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 777544
No 105
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.72 E-value=2.3e+02 Score=26.85 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=34.0
Q ss_pred CCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc----CCHHHHHHHHhcC--CceEEEEcc
Q 008342 66 SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR----LNATVVAFILSHA--SSAVVIVDQ 125 (569)
Q Consensus 66 g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 125 (569)
++++||.|.+..+....... ++...|+.++.++.+ ...+.+...++.. ++++|++..
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 46778888877776655432 233356665555432 4567777777653 456666543
No 106
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=25.80 E-value=1e+02 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.148 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHh--cCCCCCCEEEEEcCCc-hhHHHHH-HHhhhcCceEeecc
Q 008342 51 TYRRCRRFASALSK--LSIGLGTTVSVIAPNV-PAMYEAQ-FGAPMAGAVLNSIN 101 (569)
Q Consensus 51 l~~~~~~la~~L~~--~g~~~g~~V~i~~~~~-~~~~~~~-lA~~~~G~~~v~l~ 101 (569)
+..+..++|..+.+ .++++|+.|.|..+.. .+++-++ -++.++|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 35677888888887 5679999999998864 3444444 48888999877654
No 107
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=25.54 E-value=1.3e+02 Score=28.14 Aligned_cols=77 Identities=17% Similarity=0.042 Sum_probs=48.1
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc-eEeeccccCCHHHHHHHHhcCCce
Q 008342 44 KHYTWHQTYRRCRR---FASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA-VLNSINIRLNATVVAFILSHASSA 119 (569)
Q Consensus 44 ~~~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 119 (569)
..+++.+....... ..+.+...++++|++|+|+....+..+++.+|- ..|+ .++.++.. .++ ..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--KHC-CDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--HHH-HHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--HHH-HHHHHHhCCc
Confidence 34666665422111 112355678999999999987666777777765 4687 55555433 333 3566778888
Q ss_pred EEEEc
Q 008342 120 VVIVD 124 (569)
Q Consensus 120 ~vi~~ 124 (569)
.++..
T Consensus 214 ~vi~~ 218 (352)
T 3fpc_A 214 DIINY 218 (352)
T ss_dssp EEECG
T ss_pred eEEcC
Confidence 87754
No 108
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=24.89 E-value=3.6e+02 Score=25.39 Aligned_cols=69 Identities=7% Similarity=-0.116 Sum_probs=33.2
Q ss_pred HHHHHHHHh-cCCCCCCEEEEEcCCchhHH-HHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 56 RRFASALSK-LSIGLGTTVSVIAPNVPAMY-EAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 56 ~~la~~L~~-~g~~~g~~V~i~~~~~~~~~-~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
..+..+|.+ .|.. .+.+.+...+..+.+ .++.+++.-|-.++..++.+....+...++..+.+++.++-
T Consensus 47 ~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 47 NETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEec
Confidence 334444433 2433 334444444543433 33334455555555455554443455566666666666543
No 109
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.85 E-value=2.3e+02 Score=26.39 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc----CCHHHHHHHHhcCCceEEEE
Q 008342 68 GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR----LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 68 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~vi~ 123 (569)
++||.|.+..+....+.....++...|+.++.++.+ .+.+.+...++. ++++|++
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 355665554443333322222233345544444321 234555555533 4444444
No 110
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=24.03 E-value=4.2e+02 Score=24.23 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=52.3
Q ss_pred CceeeeeCC--eeeeHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHH
Q 008342 35 TRKSVVYGS--KHYTWHQTYRRCRRFASALSKLSI-GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAF 111 (569)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~la~~L~~~g~-~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 111 (569)
.++.+-.++ .+-||++-.. ...+.. +.+.|. ++|+.|.-.. .+-.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a-~~~i~~-a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG-ANMVWQ-AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH-HHHHHH-HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH-HHHHHH-HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 456665554 3344444322 222333 344454 6666655544 444555666777788986665555434445566
Q ss_pred HHhcCCceEEEEccc
Q 008342 112 ILSHASSAVVIVDQE 126 (569)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (569)
.++.+++++++++.+
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 888999999998865
No 111
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.98 E-value=2.3e+02 Score=25.45 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHhhhhCCCceeeeeCC------eeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchhH
Q 008342 24 WFINRAATLHPTRKSVVYGS------KHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAPNVPAM 83 (569)
Q Consensus 24 ~~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~ 83 (569)
.++.+..+.-|+...+++.+ ..-|..++.+.+.+.+.+|.+.|. ...++.-|+...
T Consensus 19 tv~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~ 80 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATA 80 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccH
Confidence 45666677889998888766 567889999999999999998765 344455555554
No 112
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=23.89 E-value=1.9e+02 Score=27.31 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=23.4
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc-----CCHHHHHHHHhcCCceEEEE
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-----LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~ 123 (569)
+++||.|.+..+...... -++...|+.++.++.+ ...+.+...++. ++++|++
T Consensus 76 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 76 IGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp CCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred CCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 455666555544433322 2233345444333321 344555555543 4455554
No 113
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=23.83 E-value=4.3e+02 Score=24.33 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=42.6
Q ss_pred HhcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 63 SKLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 63 ~~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
.+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++..
T Consensus 65 ~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444 46777766544 344556666777888987666655544555567889999999999863
No 114
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=23.72 E-value=3e+02 Score=26.86 Aligned_cols=102 Identities=12% Similarity=-0.051 Sum_probs=59.0
Q ss_pred CceeeeeCC--e-eeeHHHHH--HHHHHHHHHH-HhcCC-CCCC----------------EEEEEcCCchhHHHHHHHhh
Q 008342 35 TRKSVVYGS--K-HYTWHQTY--RRCRRFASAL-SKLSI-GLGT----------------TVSVIAPNVPAMYEAQFGAP 91 (569)
Q Consensus 35 ~~~a~~~~~--~-~~Ty~el~--~~~~~la~~L-~~~g~-~~g~----------------~V~i~~~~~~~~~~~~lA~~ 91 (569)
.++.+-.++ . +=||++-. ..+.+++..+ .+.|+ ++|+ +..+....+-.-..+.++|.
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa 180 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA 180 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHH
Confidence 456666654 2 44665533 3333443332 34564 5555 23344444555566667788
Q ss_pred hcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHHHHHH
Q 008342 92 MAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAEEALK 136 (569)
Q Consensus 92 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~ 136 (569)
+.|..++.+-|...+..-...++.++++++++...+......+.+
T Consensus 181 ~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a~~ 225 (442)
T 3ss7_X 181 RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRK 225 (442)
T ss_dssp HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHHHH
T ss_pred HhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHH
Confidence 889865555444444455677889999999999876554444433
No 115
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=23.71 E-value=1.9e+02 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=39.2
Q ss_pred cCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcccchHHHH
Q 008342 77 APNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQEFFSLAE 132 (569)
Q Consensus 77 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (569)
...+-.-..+.++|.+.|..++.+-|...+......++.+++++++++..+.....
T Consensus 99 aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~ 154 (364)
T 4h27_A 99 SSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFE 154 (364)
T ss_dssp CCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTHHHH
T ss_pred eCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 33345556666778888987666656555566678889999999999876544433
No 116
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=23.37 E-value=4.2e+02 Score=24.65 Aligned_cols=52 Identities=6% Similarity=0.020 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc--------CCHHHHHHHHhcCCceEEEE
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR--------LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~vi~ 123 (569)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...++. ++++++
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 356777776555444332 2344566666655443 466777777766 565554
No 117
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=23.28 E-value=2.5e+02 Score=26.33 Aligned_cols=79 Identities=16% Similarity=0.044 Sum_probs=49.2
Q ss_pred eeeHHHHHHHH--HHHH-HHHHh-cCCCCCCEEEEEcC-CchhHHHHHHHhhhcCceE-eeccccCCHHHHHHHHhcCCc
Q 008342 45 HYTWHQTYRRC--RRFA-SALSK-LSIGLGTTVSVIAP-NVPAMYEAQFGAPMAGAVL-NSINIRLNATVVAFILSHASS 118 (569)
Q Consensus 45 ~~Ty~el~~~~--~~la-~~L~~-~g~~~g~~V~i~~~-~~~~~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~ 118 (569)
.+++.+..... -..| +.|.+ .++++|++|+|+.. ..+..+++.+|-. .|+.. +..+.....++...+++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654321 1122 23434 47999999999997 5677777777654 57743 444444344445566778888
Q ss_pred eEEEEc
Q 008342 119 AVVIVD 124 (569)
Q Consensus 119 ~~vi~~ 124 (569)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887743
No 118
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=23.17 E-value=1.7e+02 Score=27.68 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc-eEeeccccCCHHHHHHHHhcCCceEEEE
Q 008342 62 LSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA-VLNSINIRLNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 62 L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 123 (569)
|...++++|++|+|........+++.+|- ..|+ .++.++.. .+. ..+++..+++.++.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 55568999999999988666777666665 5687 55555433 333 34566778877764
No 119
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=23.10 E-value=1.8e+02 Score=20.79 Aligned_cols=63 Identities=8% Similarity=0.050 Sum_probs=34.9
Q ss_pred chHHHHHHHhcC--CCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC
Q 008342 464 SSVEVEKVLYLH--PLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 464 ~~~~iE~~l~~~--~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 526 (569)
....|.+.+.++ |+|.++-=+-...-...-.+.+-++..+............++.+.+++.++
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~ 75 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFP 75 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCC
Confidence 356778888888 888765332221111112334556665544333333456777777777775
No 120
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.10 E-value=1.7e+02 Score=26.58 Aligned_cols=85 Identities=5% Similarity=-0.004 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccc--cCCHHHHHH---HHhcCCceE
Q 008342 48 WHQTYRRCRRFASALSK--LSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI--RLNATVVAF---ILSHASSAV 120 (569)
Q Consensus 48 y~el~~~~~~la~~L~~--~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l~~---~l~~~~~~~ 120 (569)
+..+.++...+-..+.+ ..+..+.++.+...+...++.--|++-..|..- +++ .-++.++.. .+++.++++
T Consensus 138 ~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~--~~~~~eps~~~l~~l~~~ik~~~v~~ 215 (282)
T 3mfq_A 138 TEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQG--VSTDSEVANSDMIETVNLIIDHNIKA 215 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSC--SSSCSCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccc--cCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34455555555555544 234445677777888888888888887776422 222 234555554 556778999
Q ss_pred EEEcccchHHHHHH
Q 008342 121 VIVDQEFFSLAEEA 134 (569)
Q Consensus 121 vi~~~~~~~~~~~~ 134 (569)
||+++.......+.
T Consensus 216 if~e~~~~~~~~~~ 229 (282)
T 3mfq_A 216 IFTESTTNPERMKK 229 (282)
T ss_dssp EECBTTSCTHHHHH
T ss_pred EEEeCCCChHHHHH
Confidence 99988766554443
No 121
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=23.09 E-value=3.3e+02 Score=25.25 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc------CCHHHHHHHHhcCCceEEEEc
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR------LNATVVAFILSHASSAVVIVD 124 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~------~~~~~l~~~l~~~~~~~vi~~ 124 (569)
+++||.|.+..+....+.- ++...|+.+++++.. ...+.+...++. ++++|++.
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYD---IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 5688998887776555432 344556655554432 367778777753 56666654
No 122
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=23.05 E-value=2.6e+02 Score=28.09 Aligned_cols=61 Identities=7% Similarity=-0.049 Sum_probs=42.3
Q ss_pred hcC-CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 64 KLS-IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 64 ~~g-~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
+.| +++|+.|.-. ..+-.-..+.++|...|..++.+-|...+..-...++.++++++++..
T Consensus 106 ~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIEP-TSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEEe-CCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 5778877553 444455666678888898776665554455566788999999999875
No 123
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.95 E-value=1.9e+02 Score=27.08 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=47.4
Q ss_pred eeeeHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc-eEeeccccCCHHHHHHHHhcCCce
Q 008342 44 KHYTWHQTYRRCRRFA---SALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA-VLNSINIRLNATVVAFILSHASSA 119 (569)
Q Consensus 44 ~~~Ty~el~~~~~~la---~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 119 (569)
..+++.+..- ..-++ +.|...++++|++|+|+....+..+++.+|- ..|+ .++.++. +.+++ .++++.+++
T Consensus 144 ~~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~ 218 (356)
T 1pl8_A 144 DNVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATRL-SKAKEIGAD 218 (356)
T ss_dssp TTSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHHH-HHHHHTTCS
T ss_pred CCCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHHH-HHHHHhCCC
Confidence 3467766432 22222 2344568999999999987667777777765 4587 5555543 23333 455677888
Q ss_pred EEEEcc
Q 008342 120 VVIVDQ 125 (569)
Q Consensus 120 ~vi~~~ 125 (569)
.++...
T Consensus 219 ~vi~~~ 224 (356)
T 1pl8_A 219 LVLQIS 224 (356)
T ss_dssp EEEECS
T ss_pred EEEcCc
Confidence 777543
No 124
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=22.93 E-value=4.3e+02 Score=24.76 Aligned_cols=53 Identities=8% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc-------CCHHHHHHHHhcCCceEEEE
Q 008342 68 GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-------LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 68 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~ 123 (569)
++||.|.+..|.-..+. .++...|+.++.++.. ...+.+...++..++++|++
T Consensus 111 ~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 111 KPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred CCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 45666666544433322 2233445555444331 45666666665445566554
No 125
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.69 E-value=3.6e+02 Score=24.86 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc-eEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 60 SALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA-VLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 60 ~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
..+...++++|++|+|...-....+.+++|-. .|+ +++.++. +.++ ..++++.+++.++...+
T Consensus 151 ~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~-~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVA-LGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHTTCCTTSEEEEECCSHHHHHHHHHHHH-TTCSEEEEEES--CHHH-HHHHHHTTCSEEEETTT
T ss_pred HHHHHhccCCCCEEEEECCCCcchHHHHHHHH-cCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCCC
Confidence 33455788999999999876677666666654 454 3344433 3343 45677889988886554
No 126
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=22.65 E-value=2.2e+02 Score=26.80 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHhcCCC-CCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 61 ALSKLSIG-LGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 61 ~L~~~g~~-~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
.|.+.+++ +|++|+|.....+...++.+|- ..|+.++.+.. +.+++....+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 35566888 9999999987667777777765 46876554443 345555555578888776543
No 127
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=22.58 E-value=1.1e+02 Score=29.67 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHh--cCCCCCCEEEEEcCCc-hhHHHHH-HHhhhcCceEeecc
Q 008342 51 TYRRCRRFASALSK--LSIGLGTTVSVIAPNV-PAMYEAQ-FGAPMAGAVLNSIN 101 (569)
Q Consensus 51 l~~~~~~la~~L~~--~g~~~g~~V~i~~~~~-~~~~~~~-lA~~~~G~~~v~l~ 101 (569)
+..+..++|..|.+ .++++|+.|.|..+-. .+++-++ -++..+|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45678888988887 5679999999988864 3444444 48888999877654
No 128
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=22.32 E-value=4.8e+02 Score=24.32 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccc--c-----CCHHHHHHHHhcCCceEEEE
Q 008342 68 GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI--R-----LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 68 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~-----~~~~~l~~~l~~~~~~~vi~ 123 (569)
++||.|.+..|.-..+. .++...|+.++.++. . ...+.+...++..++++|++
T Consensus 109 ~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 56777776665544332 223345655444432 1 45677777776555666664
No 129
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=22.29 E-value=1.7e+02 Score=27.80 Aligned_cols=76 Identities=12% Similarity=0.040 Sum_probs=45.4
Q ss_pred eeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEE
Q 008342 46 YTWHQTYRRCRR---FASALSKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVI 122 (569)
Q Consensus 46 ~Ty~el~~~~~~---la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 122 (569)
+++.+....... .-+.|.+.++++|++|+|.....+..+++.+|-. .|+.++.+... .+++. ++++.+++.++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~~--~~~~~-~a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTS--EAKRE-AAKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESS--GGGHH-HHHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCC--HHHHH-HHHHcCCcEEe
Confidence 777664322111 1234555689999999999886677777777654 58765544433 33333 34456777776
Q ss_pred Ecc
Q 008342 123 VDQ 125 (569)
Q Consensus 123 ~~~ 125 (569)
...
T Consensus 244 ~~~ 246 (369)
T 1uuf_A 244 NSR 246 (369)
T ss_dssp ETT
T ss_pred ccc
Confidence 443
No 130
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=22.27 E-value=1.4e+02 Score=20.60 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=30.0
Q ss_pred hHHHHHHHhcCCCceeeEEEeecCCCCCceeeEEEEecCCcchhhhhhHHHHHHHHHHhcCC
Q 008342 465 SVEVEKVLYLHPLVLEAAVVARPDERWGESPCAFVTLKPEADELDKGKLAEDVSKFCRAKMP 526 (569)
Q Consensus 465 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 526 (569)
..++++.|.++|+|.+|..+.-+.+ ..+.+... +.+++.+++.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~~----------d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEAD----------SMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEECS----------SHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEEC----------CHHHHHHHHHHHhc
Confidence 4788999999999999988643222 44444433 23556666655554
No 131
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=21.86 E-value=4.2e+02 Score=24.28 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=39.1
Q ss_pred cCCCCCCEEEEEcC-CchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEcc
Q 008342 65 LSIGLGTTVSVIAP-NVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQ 125 (569)
Q Consensus 65 ~g~~~g~~V~i~~~-~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (569)
.++++|++|+|... ..+...++.+|. ..|+.++.+.. +.+++. .+++.+++.++...
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~~ 201 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVAS--TDEKLK-IAKEYGAEYLINAS 201 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeCC
Confidence 47899999999984 456666666655 56887666554 355544 56778888777543
No 132
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=21.66 E-value=5e+02 Score=24.28 Aligned_cols=23 Identities=13% Similarity=-0.010 Sum_probs=14.4
Q ss_pred CCCCcceeecchHHHHHHHHhHh
Q 008342 207 TASPKGVVVSHRGAYLMSLNGAL 229 (569)
Q Consensus 207 TG~pk~v~~t~~~~~~~~~~~~~ 229 (569)
.|.+-|.......+.........
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~ 280 (407)
T 3nra_A 258 SGYRLGVAFGSRAIIARMEKLQA 280 (407)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHH
T ss_pred CeeeEEEEEcCHHHHHHHHHHHh
Confidence 34556777777777666554443
No 133
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=21.42 E-value=1.3e+02 Score=22.07 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=33.3
Q ss_pred cccCHHHHHHHhhhhCC--------------CceeeeeCCeeeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Q 008342 18 TALTPLWFINRAATLHP--------------TRKSVVYGSKHYTWHQTYRRCRRFASALSKLSIGLGTTVSVIAP 78 (569)
Q Consensus 18 ~~~~l~~~l~~~a~~~p--------------~~~a~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~i~~~ 78 (569)
...|+.++++....++| ..+++..+++.+.. ..-++.||.|+++-|
T Consensus 35 ~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 35 EGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECC
Confidence 34699999999888875 44556666666641 445889999999755
No 134
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.09 E-value=3.5e+02 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.009 Sum_probs=20.1
Q ss_pred CCCCEEEEEcCCchhHHHHHHHhhhcCceEeecc--cc----CCHHHHHHHHh
Q 008342 68 GLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSIN--IR----LNATVVAFILS 114 (569)
Q Consensus 68 ~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~ 114 (569)
++||.|.+..+........ +...|+.++.++ .+ ...+.+...++
T Consensus 91 ~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 140 (371)
T 2e7j_A 91 KKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIE 140 (371)
T ss_dssp CTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHH
T ss_pred CCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHH
Confidence 4566665554443332222 344455444443 21 24555555554
No 135
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=20.95 E-value=2.1e+02 Score=26.44 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhc--CCCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccc--cCCHHHHH---HHHhcCCceEEE
Q 008342 50 QTYRRCRRFASALSKL--SIGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINI--RLNATVVA---FILSHASSAVVI 122 (569)
Q Consensus 50 el~~~~~~la~~L~~~--g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l~---~~l~~~~~~~vi 122 (569)
.+.++..++-..+++. .++...+..+...+...++.-.|++-..|.. -+++ .-++.++. ..++..++++||
T Consensus 174 ~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~If 251 (313)
T 1toa_A 174 AYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQ--GVSTASEASAHDMQELAAFIAQRKLPAIF 251 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEE--CSSCSSCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3444444444443331 3333356666777788999998988766542 2322 33455544 456678999999
Q ss_pred EcccchHHHHHHH
Q 008342 123 VDQEFFSLAEEAL 135 (569)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (569)
+++.......+.+
T Consensus 252 ~e~~~~~~~~~~l 264 (313)
T 1toa_A 252 IESSIPHKNVEAL 264 (313)
T ss_dssp EETTSCTHHHHHH
T ss_pred EeCCCChHHHHHH
Confidence 9988766554443
No 136
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=20.58 E-value=1.4e+02 Score=20.24 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=14.6
Q ss_pred HHHHHhhhhCCCceeeeeCCeeeeHHHHHH
Q 008342 24 WFINRAATLHPTRKSVVYGSKHYTWHQTYR 53 (569)
Q Consensus 24 ~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~ 53 (569)
..|......+|+.+.++..++..+|..+.+
T Consensus 34 ~~l~~~~~~~~~~~V~I~aD~~~~y~~vv~ 63 (74)
T 2jwk_A 34 QLSRQEFDKDNNTLFLVGGAKEVPYEEVIK 63 (74)
T ss_dssp HHHHHHHHHCTTCCEEEEECTTSCHHHHHH
T ss_pred HHHHHHHhhCCCceEEEEcCCCCCHHHHHH
Confidence 333344444555555555555555554443
No 137
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=20.33 E-value=4.8e+02 Score=23.61 Aligned_cols=47 Identities=9% Similarity=-0.087 Sum_probs=31.8
Q ss_pred chhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEccc
Q 008342 80 VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVDQE 126 (569)
Q Consensus 80 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (569)
+-.-..+.++|.+.|..++.+-|...+..-...++.+++++++++..
T Consensus 74 GN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 74 GNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred hHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 34445555667788886665545434445566788999999998865
No 138
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=20.32 E-value=2.9e+02 Score=25.47 Aligned_cols=59 Identities=15% Similarity=0.070 Sum_probs=40.5
Q ss_pred HhcCCCCCCEEEEEcCC-chhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcCCceEEEEc
Q 008342 63 SKLSIGLGTTVSVIAPN-VPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHASSAVVIVD 124 (569)
Q Consensus 63 ~~~g~~~g~~V~i~~~~-~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 124 (569)
...++++|++|+|...+ .+...++.++. ..|+.++.+.. +.+++..+.+..+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIAR-LKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 44689999999999984 56666665554 57886655543 45566555578888877753
No 139
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=20.31 E-value=2.7e+02 Score=26.25 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=48.5
Q ss_pred eeeeHHHHHHHHHHH--HH-HH-HhcCCCCCCEEEEEcCCchhHHHHHHHhhhcCc-eEeeccccCCHHHHHHHHhcCCc
Q 008342 44 KHYTWHQTYRRCRRF--AS-AL-SKLSIGLGTTVSVIAPNVPAMYEAQFGAPMAGA-VLNSINIRLNATVVAFILSHASS 118 (569)
Q Consensus 44 ~~~Ty~el~~~~~~l--a~-~L-~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~ 118 (569)
..+++.+.......+ |. .+ ...++++|++|+|+....+..+++.+|- ..|+ .++.++.. .+++ .++++.++
T Consensus 164 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~--~~~~-~~a~~lGa 239 (378)
T 3uko_A 164 PTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDID--SKKY-ETAKKFGV 239 (378)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSC--TTHH-HHHHTTTC
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCC--HHHH-HHHHHcCC
Confidence 346776654432222 21 13 3468899999999988666777776665 4587 55655544 3333 35678888
Q ss_pred eEEEEcc
Q 008342 119 AVVIVDQ 125 (569)
Q Consensus 119 ~~vi~~~ 125 (569)
+.++...
T Consensus 240 ~~vi~~~ 246 (378)
T 3uko_A 240 NEFVNPK 246 (378)
T ss_dssp CEEECGG
T ss_pred cEEEccc
Confidence 8877544
No 140
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.15 E-value=4.2e+02 Score=24.83 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHHHhcC---CceEEEEc
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFILSHA---SSAVVIVD 124 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~ 124 (569)
+++||.|.+..+....+. .++...|+.+++++. ...+.+...++.. ++++|++.
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 356666666555443322 233345665555543 3456666666554 45555543
No 141
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.12 E-value=2.3e+02 Score=26.18 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=40.5
Q ss_pred EEEEEcCCchhHHHHHHHhhhcCceEeeccccCCHHHHHHH---HhcCCceEEEEcccchHHHHHHH
Q 008342 72 TVSVIAPNVPAMYEAQFGAPMAGAVLNSINIRLNATVVAFI---LSHASSAVVIVDQEFFSLAEEAL 135 (569)
Q Consensus 72 ~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~---l~~~~~~~vi~~~~~~~~~~~~~ 135 (569)
+..+...+...++.--|++-.+|..-+.-...-++.++..+ ++..++++||+++.......+.+
T Consensus 191 ~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~i 257 (312)
T 2o1e_A 191 KEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTL 257 (312)
T ss_dssp CEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHH
T ss_pred CEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHH
Confidence 45566777888888888887665432111223445555555 55678899999988766554443
No 142
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=20.00 E-value=4.7e+02 Score=24.19 Aligned_cols=53 Identities=9% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCchhHHHHHHHhhhcCceEeecccc-------CCHHHHHHHHhcCCceEEEE
Q 008342 67 IGLGTTVSVIAPNVPAMYEAQFGAPMAGAVLNSINIR-------LNATVVAFILSHASSAVVIV 123 (569)
Q Consensus 67 ~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~ 123 (569)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...+ ..++++++.
T Consensus 103 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i 162 (383)
T 3kax_A 103 TKENESVLVQPPIYPPFF---EMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLL 162 (383)
T ss_dssp CCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEE
T ss_pred CCCCCEEEEcCCCcHHHH---HHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEE
Confidence 457787776665544332 3344566666655432 4667777777 445666654
Done!