Query 008343
Match_columns 569
No_of_seqs 501 out of 2808
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 1.2E-81 2.7E-86 652.5 39.6 420 44-551 8-444 (452)
2 PLN02533 probable purple acid 100.0 3.8E-77 8.2E-82 639.0 48.2 378 81-546 39-420 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 1.6E-45 3.5E-50 378.5 29.5 276 207-544 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 4.4E-32 9.6E-37 282.6 27.7 256 208-547 26-332 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 1.5E-30 3.3E-35 265.2 25.2 243 209-528 1-274 (277)
6 PF09423 PhoD: PhoD-like phosp 100.0 2.8E-28 6.1E-33 265.4 32.0 313 94-426 5-381 (453)
7 COG3540 PhoD Phosphodiesterase 100.0 1.5E-27 3.3E-32 246.6 21.1 310 94-425 45-421 (522)
8 cd07395 MPP_CSTP1 Homo sapiens 100.0 7.9E-27 1.7E-31 236.1 23.8 205 207-448 3-236 (262)
9 cd07402 MPP_GpdQ Enterobacter 99.9 6E-23 1.3E-27 204.6 20.1 192 210-449 1-213 (240)
10 cd07396 MPP_Nbla03831 Homo sap 99.9 5.5E-23 1.2E-27 208.7 18.0 198 209-449 1-247 (267)
11 KOG2679 Purple (tartrate-resis 99.9 1.6E-22 3.5E-27 195.6 19.8 203 208-448 43-275 (336)
12 PRK11148 cyclic 3',5'-adenosin 99.9 1.5E-20 3.2E-25 191.8 23.6 191 208-448 14-225 (275)
13 cd07401 MPP_TMEM62_N Homo sapi 99.8 3.7E-20 7.9E-25 186.8 19.4 192 211-428 2-216 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.8 1.9E-18 4.2E-23 169.6 14.6 149 209-426 1-165 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 1.4E-17 3E-22 171.6 16.5 192 213-425 42-264 (296)
16 PF00149 Metallophos: Calcineu 99.7 4.6E-17 9.9E-22 149.8 11.1 191 209-422 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 2E-15 4.2E-20 152.1 18.4 173 225-426 35-232 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.6 4.6E-15 1E-19 147.6 17.8 191 211-446 1-226 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 4E-15 8.7E-20 144.4 13.8 150 208-426 2-180 (199)
20 TIGR03729 acc_ester putative p 99.6 1E-14 2.2E-19 145.8 14.5 176 210-423 1-222 (239)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.6 2.2E-14 4.7E-19 137.0 16.1 167 211-423 1-174 (188)
22 TIGR03767 P_acnes_RR metalloph 99.6 2.7E-14 5.8E-19 151.8 17.3 94 329-425 290-395 (496)
23 COG1409 Icc Predicted phosphoh 99.5 2.4E-13 5.2E-18 138.9 17.8 179 209-422 1-193 (301)
24 cd07400 MPP_YydB Bacillus subt 99.5 3.1E-13 6.8E-18 123.9 13.2 132 211-445 1-144 (144)
25 PF14008 Metallophos_C: Iron/z 99.5 5.6E-14 1.2E-18 110.1 6.4 43 496-540 20-62 (62)
26 cd07385 MPP_YkuE_C Bacillus su 99.5 1.1E-12 2.4E-17 129.2 14.9 167 208-428 1-172 (223)
27 cd07404 MPP_MS158 Microscilla 99.4 3.4E-13 7.3E-18 126.9 9.8 145 211-425 1-152 (166)
28 TIGR03768 RPA4764 metallophosp 99.4 5E-12 1.1E-16 133.3 16.5 93 329-422 291-411 (492)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.4 2.6E-12 5.7E-17 126.1 13.1 185 210-425 1-204 (223)
30 cd07388 MPP_Tt1561 Thermus the 99.4 1.8E-11 3.9E-16 120.5 18.6 173 208-420 4-189 (224)
31 cd07389 MPP_PhoD Bacillus subt 99.4 8.5E-12 1.9E-16 123.5 15.7 178 210-425 1-207 (228)
32 PRK11340 phosphodiesterase Yae 99.4 1.4E-11 3.1E-16 125.3 16.9 164 208-428 49-220 (271)
33 KOG1432 Predicted DNA repair e 99.4 1.2E-10 2.7E-15 117.3 21.9 210 208-448 53-330 (379)
34 cd00838 MPP_superfamily metall 99.3 4.1E-11 8.8E-16 106.0 11.8 116 212-426 1-119 (131)
35 cd07397 MPP_DevT Myxococcus xa 99.1 3.5E-09 7.5E-14 104.8 17.9 196 209-442 1-230 (238)
36 cd07379 MPP_239FB Homo sapiens 99.1 8.3E-10 1.8E-14 100.3 11.5 116 210-423 1-117 (135)
37 PF12850 Metallophos_2: Calcin 99.1 1.4E-09 2.9E-14 100.6 11.6 138 209-448 1-139 (156)
38 PRK05340 UDP-2,3-diacylglucosa 99.0 4.4E-09 9.6E-14 105.2 13.2 198 209-448 1-221 (241)
39 COG1408 Predicted phosphohydro 99.0 5.8E-09 1.3E-13 106.4 13.3 75 208-306 44-121 (284)
40 cd08166 MPP_Cdc1_like_1 unchar 98.9 1.1E-08 2.4E-13 98.0 11.3 39 377-425 112-150 (195)
41 cd00841 MPP_YfcE Escherichia c 98.9 1.1E-08 2.5E-13 94.8 10.8 57 375-448 76-132 (155)
42 COG1768 Predicted phosphohydro 98.8 1.3E-07 2.8E-12 87.4 14.6 63 372-445 157-219 (230)
43 TIGR00040 yfcE phosphoesterase 98.8 5.6E-08 1.2E-12 90.7 12.2 37 209-245 1-39 (158)
44 cd08165 MPP_MPPE1 human MPPE1 98.8 3.3E-08 7E-13 92.3 10.5 52 231-303 35-89 (156)
45 cd07394 MPP_Vps29 Homo sapiens 98.8 5.8E-07 1.3E-11 85.8 18.8 40 401-448 97-136 (178)
46 KOG3770 Acid sphingomyelinase 98.8 1E-07 2.2E-12 103.3 14.3 179 225-425 199-407 (577)
47 cd07384 MPP_Cdc1_like Saccharo 98.7 1.1E-07 2.4E-12 90.1 12.0 32 377-426 119-150 (171)
48 TIGR01854 lipid_A_lpxH UDP-2,3 98.7 4.2E-07 9.1E-12 90.4 16.6 186 212-448 2-219 (231)
49 PF14582 Metallophos_3: Metall 98.7 1.9E-07 4.1E-12 89.9 13.4 194 208-423 5-219 (255)
50 cd07403 MPP_TTHA0053 Thermus t 98.7 5.6E-08 1.2E-12 87.8 8.7 49 376-425 58-106 (129)
51 COG2129 Predicted phosphoester 98.7 1E-06 2.2E-11 85.2 17.6 178 208-425 3-190 (226)
52 cd00845 MPP_UshA_N_like Escher 98.7 3.3E-07 7.2E-12 92.1 13.5 175 209-425 1-209 (252)
53 cd08164 MPP_Ted1 Saccharomyces 98.6 2E-07 4.2E-12 89.4 8.5 32 377-426 129-160 (193)
54 cd07398 MPP_YbbF-LpxH Escheric 98.6 4.3E-07 9.2E-12 89.0 11.2 194 212-445 1-216 (217)
55 cd07410 MPP_CpdB_N Escherichia 98.5 2.5E-06 5.4E-11 87.2 16.7 189 209-424 1-232 (277)
56 cd07406 MPP_CG11883_N Drosophi 98.5 1.5E-06 3.2E-11 88.0 14.7 174 209-423 1-208 (257)
57 PRK09453 phosphodiesterase; Pr 98.5 1.3E-06 2.8E-11 83.6 12.9 75 209-303 1-76 (182)
58 TIGR00583 mre11 DNA repair pro 98.4 1.9E-06 4.1E-11 92.2 12.5 40 208-247 3-55 (405)
59 cd07411 MPP_SoxB_N Thermus the 98.3 1.3E-05 2.9E-10 81.3 14.8 176 226-448 41-240 (264)
60 cd07382 MPP_DR1281 Deinococcus 98.3 3.5E-05 7.5E-10 77.6 17.2 189 210-451 1-203 (255)
61 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.3 2.2E-05 4.7E-10 79.5 15.8 188 211-427 1-234 (262)
62 COG0420 SbcD DNA repair exonuc 98.3 5.2E-06 1.1E-10 89.0 11.5 74 209-304 1-89 (390)
63 cd07408 MPP_SA0022_N Staphyloc 98.2 1.5E-05 3.3E-10 80.5 13.7 181 209-424 1-215 (257)
64 cd07412 MPP_YhcR_N Bacillus su 98.2 3.1E-05 6.7E-10 79.7 15.3 84 358-448 177-262 (288)
65 COG0622 Predicted phosphoester 98.2 2.3E-05 4.9E-10 74.2 12.6 38 209-246 2-40 (172)
66 cd07407 MPP_YHR202W_N Saccharo 98.2 0.00018 3.9E-09 73.7 19.3 201 208-448 5-250 (282)
67 COG2908 Uncharacterized protei 98.1 6.9E-06 1.5E-10 80.3 7.6 189 213-447 2-216 (237)
68 TIGR00282 metallophosphoestera 98.1 0.00023 4.9E-09 72.0 18.5 194 209-451 1-206 (266)
69 cd07409 MPP_CD73_N CD73 ecto-5 98.1 4.4E-05 9.6E-10 78.2 13.7 157 226-423 40-219 (281)
70 PRK09419 bifunctional 2',3'-cy 98.1 0.00012 2.6E-09 89.0 18.5 184 207-423 659-883 (1163)
71 PRK04036 DNA polymerase II sma 98.0 6.2E-05 1.3E-09 83.2 13.4 204 207-448 242-470 (504)
72 cd07405 MPP_UshA_N Escherichia 98.0 0.00022 4.7E-09 73.3 15.4 188 209-424 1-223 (285)
73 KOG3662 Cell division control 97.9 7.8E-05 1.7E-09 78.7 11.4 113 208-351 48-184 (410)
74 TIGR00619 sbcd exonuclease Sbc 97.9 4E-05 8.7E-10 77.3 8.1 73 209-303 1-88 (253)
75 cd07390 MPP_AQ1575 Aquifex aeo 97.8 0.00011 2.4E-09 69.3 10.2 17 409-425 124-140 (168)
76 cd07424 MPP_PrpA_PrpB PrpA and 97.8 2.8E-05 6E-10 76.0 5.8 37 210-246 2-40 (207)
77 cd07386 MPP_DNA_pol_II_small_a 97.8 0.0003 6.4E-09 70.5 12.3 82 212-303 2-94 (243)
78 COG0737 UshA 5'-nucleotidase/2 97.7 0.00063 1.4E-08 75.8 16.0 185 207-422 25-247 (517)
79 PRK10966 exonuclease subunit S 97.7 0.0001 2.2E-09 79.3 8.5 74 209-304 1-88 (407)
80 TIGR01530 nadN NAD pyrophospha 97.7 0.00085 1.8E-08 75.2 15.8 114 293-423 84-219 (550)
81 PRK09558 ushA bifunctional UDP 97.7 0.00075 1.6E-08 75.8 15.0 186 207-423 33-258 (551)
82 PHA02546 47 endonuclease subun 97.7 0.00011 2.4E-09 77.4 7.8 74 209-303 1-89 (340)
83 cd07425 MPP_Shelphs Shewanella 97.6 0.00011 2.4E-09 71.9 6.8 24 401-424 158-181 (208)
84 COG4186 Predicted phosphoester 97.6 0.0014 3E-08 59.8 12.5 41 376-425 110-150 (186)
85 cd08162 MPP_PhoA_N Synechococc 97.6 0.00092 2E-08 69.6 12.8 39 371-423 206-245 (313)
86 KOG2863 RNA lariat debranching 97.5 0.001 2.2E-08 68.2 12.0 182 209-421 1-229 (456)
87 PRK11439 pphA serine/threonine 97.5 0.00019 4.2E-09 70.7 6.5 37 210-246 18-56 (218)
88 PRK11907 bifunctional 2',3'-cy 97.3 0.011 2.3E-07 68.8 18.3 59 359-422 296-354 (814)
89 cd07380 MPP_CWF19_N Schizosacc 97.2 0.0012 2.6E-08 61.1 7.8 50 376-425 71-126 (150)
90 cd07391 MPP_PF1019 Pyrococcus 97.1 0.00075 1.6E-08 63.9 5.9 52 230-303 37-88 (172)
91 PRK09419 bifunctional 2',3'-cy 97.1 0.01 2.2E-07 72.5 16.3 59 361-424 223-282 (1163)
92 PRK09418 bifunctional 2',3'-cy 97.0 0.026 5.7E-07 65.4 17.6 48 371-424 243-291 (780)
93 PHA02239 putative protein phos 96.9 0.002 4.3E-08 64.3 6.6 70 209-303 1-73 (235)
94 TIGR00024 SbcD_rel_arch putati 96.7 0.0043 9.4E-08 61.5 7.0 70 209-303 15-102 (225)
95 PRK09420 cpdB bifunctional 2', 96.6 0.056 1.2E-06 61.9 16.6 58 359-422 205-263 (649)
96 TIGR01390 CycNucDiestase 2',3' 96.6 0.042 9.2E-07 62.6 15.5 46 371-422 194-240 (626)
97 PRK00166 apaH diadenosine tetr 96.5 0.0039 8.4E-08 63.6 5.6 67 209-303 1-69 (275)
98 cd07423 MPP_PrpE Bacillus subt 96.4 0.0039 8.4E-08 62.1 5.1 69 209-303 1-80 (234)
99 COG1311 HYS2 Archaeal DNA poly 96.4 0.074 1.6E-06 57.3 14.4 89 207-305 224-323 (481)
100 cd07387 MPP_PolD2_C PolD2 (DNA 96.4 0.033 7.1E-07 56.2 11.3 191 211-425 2-218 (257)
101 cd07381 MPP_CapA CapA and rela 96.2 0.076 1.7E-06 52.9 12.7 128 290-425 77-222 (239)
102 PF13277 YmdB: YmdB-like prote 96.2 0.097 2.1E-06 52.2 13.0 190 212-451 1-201 (253)
103 PRK13625 bis(5'-nucleosyl)-tet 96.2 0.0095 2.1E-07 59.8 6.1 38 209-246 1-48 (245)
104 COG5555 Cytolysin, a secreted 96.0 0.016 3.6E-07 57.8 6.7 142 284-426 164-338 (392)
105 PRK09968 serine/threonine-spec 95.8 0.012 2.5E-07 58.1 5.0 37 210-246 16-54 (218)
106 COG1692 Calcineurin-like phosp 95.7 0.49 1.1E-05 46.8 15.3 193 209-448 1-202 (266)
107 PF00041 fn3: Fibronectin type 95.6 0.027 5.9E-07 45.6 5.5 76 85-186 2-77 (85)
108 smart00854 PGA_cap Bacterial c 95.6 0.31 6.6E-06 48.6 14.1 61 360-426 161-221 (239)
109 cd07422 MPP_ApaH Escherichia c 95.4 0.019 4.1E-07 58.0 4.8 64 212-303 2-67 (257)
110 cd07413 MPP_PA3087 Pseudomonas 95.3 0.024 5.2E-07 56.1 5.0 67 211-303 1-76 (222)
111 cd00144 MPP_PPP_family phospho 95.2 0.02 4.4E-07 56.1 4.2 35 212-246 1-36 (225)
112 TIGR00668 apaH bis(5'-nucleosy 95.1 0.026 5.7E-07 57.4 4.8 37 210-246 2-40 (279)
113 cd07421 MPP_Rhilphs Rhilph pho 95.1 0.034 7.4E-07 56.9 5.5 37 210-246 3-46 (304)
114 COG1407 Predicted ICC-like pho 95.1 0.048 1E-06 53.9 6.3 73 209-303 20-110 (235)
115 PF09587 PGA_cap: Bacterial ca 94.1 0.99 2.1E-05 45.3 13.4 131 290-426 75-232 (250)
116 KOG4419 5' nucleotidase [Nucle 93.8 0.44 9.5E-06 52.6 10.6 60 354-424 210-271 (602)
117 KOG2310 DNA repair exonuclease 92.4 0.31 6.7E-06 53.1 6.8 42 207-248 12-66 (646)
118 cd07416 MPP_PP2B PP2B, metallo 91.8 0.24 5.3E-06 51.3 5.2 23 399-421 222-244 (305)
119 smart00156 PP2Ac Protein phosp 90.6 0.45 9.9E-06 48.5 5.7 21 399-419 200-220 (271)
120 cd07420 MPP_RdgC Drosophila me 90.5 0.39 8.4E-06 50.1 5.1 23 399-421 253-275 (321)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 89.7 0.4 8.7E-06 49.3 4.5 23 399-421 214-236 (285)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 88.8 0.5 1.1E-05 48.7 4.4 23 399-421 222-244 (293)
123 PTZ00239 serine/threonine prot 88.7 0.55 1.2E-05 48.7 4.6 23 399-421 215-237 (303)
124 KOG4221 Receptor mediating net 88.3 1.5 3.2E-05 52.2 8.1 34 168-201 677-713 (1381)
125 KOG0196 Tyrosine kinase, EPH ( 88.0 2.4 5.2E-05 48.6 9.2 37 165-201 498-537 (996)
126 KOG3325 Membrane coat complex 87.9 4.4 9.5E-05 37.1 9.1 39 400-446 97-135 (183)
127 cd07418 MPP_PP7 PP7, metalloph 87.7 0.87 1.9E-05 48.5 5.5 22 399-420 273-294 (377)
128 PTZ00480 serine/threonine-prot 87.6 0.69 1.5E-05 48.3 4.5 23 399-421 231-253 (320)
129 PTZ00244 serine/threonine-prot 87.1 0.57 1.2E-05 48.3 3.6 23 399-421 224-246 (294)
130 cd00063 FN3 Fibronectin type 3 84.3 8.7 0.00019 30.0 8.8 23 164-186 56-78 (93)
131 cd07419 MPP_Bsu1_C Arabidopsis 83.1 2 4.3E-05 44.7 5.4 21 399-419 242-262 (311)
132 cd07417 MPP_PP5_C PP5, C-termi 82.6 2.2 4.7E-05 44.6 5.4 23 399-421 233-255 (316)
133 PF04042 DNA_pol_E_B: DNA poly 78.3 1.2 2.5E-05 43.3 1.6 82 211-304 1-92 (209)
134 KOG3947 Phosphoesterases [Gene 77.8 35 0.00075 34.7 11.7 33 208-246 61-94 (305)
135 smart00060 FN3 Fibronectin typ 77.4 15 0.00032 27.6 7.6 23 164-186 56-78 (83)
136 KOG4258 Insulin/growth factor 74.3 11 0.00023 43.8 7.9 122 84-218 487-624 (1025)
137 KOG3513 Neural cell adhesion m 71.7 21 0.00045 42.7 9.7 92 86-202 823-917 (1051)
138 KOG4221 Receptor mediating net 67.9 42 0.00091 40.7 11.1 38 164-201 573-613 (1381)
139 PTZ00235 DNA polymerase epsilo 59.1 58 0.0013 33.5 9.1 82 208-303 27-122 (291)
140 KOG0374 Serine/threonine speci 34.9 34 0.00074 35.9 3.1 23 399-421 233-255 (331)
141 PF07353 Uroplakin_II: Uroplak 34.3 45 0.00098 30.9 3.4 35 167-201 104-140 (184)
142 KOG0371 Serine/threonine prote 32.4 41 0.00089 33.9 3.0 34 211-246 62-98 (319)
143 PF09294 Interfer-bind: Interf 32.1 40 0.00086 28.5 2.6 19 166-184 68-86 (106)
144 KOG0372 Serine/threonine speci 31.1 77 0.0017 31.8 4.6 35 211-247 45-82 (303)
145 cd02852 Isoamylase_N_term Isoa 29.5 69 0.0015 27.9 3.8 23 162-184 48-70 (119)
146 cd02856 Glycogen_debranching_e 28.8 70 0.0015 27.1 3.6 23 162-184 44-66 (103)
147 cd02853 MTHase_N_term Maltooli 26.7 76 0.0017 25.8 3.3 20 163-183 40-59 (85)
148 cd02860 Pullulanase_N_term Pul 25.0 94 0.002 26.1 3.7 24 162-185 46-69 (100)
149 PF01784 NIF3: NIF3 (NGG1p int 24.0 1.1E+02 0.0023 30.6 4.4 43 377-421 56-98 (241)
150 PRK10301 hypothetical protein; 21.7 5.7E+02 0.012 22.7 11.7 35 163-197 86-122 (124)
151 cd01987 USP_OKCHK USP domain i 20.5 5.2E+02 0.011 21.8 7.8 23 399-421 74-96 (124)
152 PF10179 DUF2369: Uncharacteri 20.1 1.1E+02 0.0025 31.6 3.7 20 167-186 262-281 (300)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-81 Score=652.53 Aligned_cols=420 Identities=39% Similarity=0.631 Sum_probs=360.8
Q ss_pred ccccCCCCCCCcccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCC
Q 008343 44 IPTTLDGPFKPVTIPLDESFRGNAIDLPDTDPRVQRTVEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSV 123 (569)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qi~ls~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~ 123 (569)
.+..+.|+..+..+.+.++++-....++...|++ .+.|||||||+++..++|+|+|.|.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~peQvhlS~~~~~~~m~VswvT~~~~------------- 69 (452)
T KOG1378|consen 8 QSEINPKHTLHDINPLPGTLHLLSESEQLTFPSV-----VNSPEQVHLSFTDNLNEMRVSWVTGDGE------------- 69 (452)
T ss_pred eeeccCCCccccccccCcccccccccccccCccc-----CCCCCeEEEeccCCCCcEEEEEeCCCCC-------------
Confidence 3455667778888889999887777777666653 3569999999999888999999998752
Q ss_pred ccEEEEcccCCCCceE-EEeEEEEeeeecccCCccccccCeEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCC
Q 008343 124 VSVVRYGTRRSQLNRK-ATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDS 202 (569)
Q Consensus 124 ~~~V~yg~~~~~~~~~-~~g~~~~y~~~~p~~g~~~~~~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~ 202 (569)
.++|+||+..++.... +.|.++.++..+.. -++++|++|+|+|++|+|+|+||||||++. .||++|+|+|+|
T Consensus 70 ~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p-- 142 (452)
T KOG1378|consen 70 ENVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPP-- 142 (452)
T ss_pred CceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCC--
Confidence 3789999887764433 35666666655433 247899999999999999999999999987 599999999998
Q ss_pred CCCCCCeEEEEEcccCCCCChHHHHHHHHhC-CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008343 203 SSTSYPSRIAIVGDVGLTYNTTSTVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (569)
Q Consensus 203 g~~~~~~rfavigD~g~~~~~~~~~~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (569)
+ ...+.+|+++||+|.+.....++....+. ++|+|||+||++|++.+.+ .+||.|.
T Consensus 143 ~-~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n----------------------~~wD~f~ 199 (452)
T KOG1378|consen 143 G-QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSN----------------------WQWDEFG 199 (452)
T ss_pred C-ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCCCc----------------------cchHHHH
Confidence 2 22489999999999997777777776655 5999999999999864310 4899999
Q ss_pred HhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccC--CCCHHHHH
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--DKSGDQYK 359 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~--~~~~~Q~~ 359 (569)
++++++++.+|+|++.||||++..... .|..|..||.||.++..+..+.||||++|++|||+|+|+.++ ....+|++
T Consensus 200 r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~ 278 (452)
T KOG1378|consen 200 RQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQ 278 (452)
T ss_pred hhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHH
Confidence 999999999999999999999866544 799999999999988877788999999999999999999885 45789999
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCcc-cccchH--HHHHHHHHHHHHcCCcEEEEccccCcceeeccccCcc---
Q 008343 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKA-HYREAE--CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTL--- 433 (569)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~-~~~~~~--~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~--- 433 (569)
||+++|++++|+++||+|++.|+|||++... ++++.+ .+|+.||+||.+++||++|+||+|+|||++|++|.++
T Consensus 279 WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~ 358 (452)
T KOG1378|consen 279 WLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTG 358 (452)
T ss_pred HHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeecc
Confidence 9999999999877999999999999999765 666665 8999999999999999999999999999999999887
Q ss_pred -------CCCCCeEEEECCCCccCCcCCCCCCCCCCCCCCCCCCCcccCCCcccccccccCCCCCCCCCCCCCCccceee
Q 008343 434 -------DPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRE 506 (569)
Q Consensus 434 -------~~~g~vyIv~G~gG~~e~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~n~~~~p~~~~~~~~~~p~~s~~~~ 506 (569)
++++|+||++|+||+.|+.+.. ..+||+||+||+
T Consensus 359 ~~~~~~~d~~aPvyI~~G~~G~~e~~~~~---------------------------------------~~~~p~~Sa~R~ 399 (452)
T KOG1378|consen 359 WGPVHLVDGMAPIYITVGDGGNHEHLDPF---------------------------------------SSPQPEWSAFRE 399 (452)
T ss_pred CCcccccCCCCCEEEEEccCCcccccCcc---------------------------------------cCCCCccccccc
Confidence 8899999999999999876520 026999999999
Q ss_pred CCcceEEEEEecCCceEEEEEEecCCcceeeEEEEEEeCCCCCCC
Q 008343 507 SSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPDLCPV 551 (569)
Q Consensus 507 ~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~D~~~i~k~~~~~~~ 551 (569)
.+|||++|+++|.||++|+|++++|.++++.|+|||+|+...|..
T Consensus 400 ~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 400 GDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDYRDMVV 444 (452)
T ss_pred ccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEcccCcccc
Confidence 999999999999999999999999988999999999999766543
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=3.8e-77 Score=638.99 Aligned_cols=378 Identities=46% Similarity=0.829 Sum_probs=329.1
Q ss_pred CCCCCCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEcccCCCCceEEEeEEEEeeeecccCCccccc
Q 008343 81 VEGFEPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYT 160 (569)
Q Consensus 81 ~~~~~P~qi~ls~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~p~~g~~~~~ 160 (569)
.....|+||||++++ +++|+|+|.|.+. ..+.|+||++++.+...+.|++.+|+.. ..+.
T Consensus 39 ~~~~~P~qvhls~~~-~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~ 98 (427)
T PLN02533 39 DDPTHPDQVHISLVG-PDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYR 98 (427)
T ss_pred CCCCCCceEEEEEcC-CCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------cccc
Confidence 355689999999998 9999999999753 2478999999999999999998888632 2457
Q ss_pred cCeEEEEEeCCCCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHhCCCCEEEE
Q 008343 161 SGIIHHVRLTGLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILL 240 (569)
Q Consensus 161 ~~~~h~v~l~gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~g~~~~~~rfavigD~g~~~~~~~~~~~l~~~~pDfvl~ 240 (569)
++++|+|+|+||+|+|+|+|||+.. .+|++++|+|+|.. .++||+++||+|.......+++++.+.+||||||
T Consensus 99 ~g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~ 171 (427)
T PLN02533 99 SGQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFIL 171 (427)
T ss_pred CCeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEE
Confidence 8999999999999999999999964 45899999998853 3799999999997766667888998889999999
Q ss_pred cCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCccccccc--cchhhHHhhhcc
Q 008343 241 VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQA--ENRTFVAYTSRF 318 (569)
Q Consensus 241 ~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~--~~~~~~~y~~~f 318 (569)
+||++|++. |+.+|+.|.+.++++.+.+|+|+++||||..... ....|..|..+|
T Consensus 172 ~GDl~y~~~-----------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf 228 (427)
T PLN02533 172 PGDLSYANF-----------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARW 228 (427)
T ss_pred cCccccccc-----------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhcc
Confidence 999999631 3578999999999999999999999999986431 234678899999
Q ss_pred CCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccc--hH
Q 008343 319 AFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE--AE 396 (569)
Q Consensus 319 ~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~--~~ 396 (569)
.||.++.+...+.||||++|++|||+||++.++....+|++||+++|++++++.+||+|+++|+|+|++...+..+ ..
T Consensus 229 ~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~ 308 (427)
T PLN02533 229 RMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESV 308 (427)
T ss_pred cCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhH
Confidence 9998766667789999999999999999999888889999999999999988889999999999999876543222 34
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCccCCcCCCCCCCCCCCCCCCCCCCcccCC
Q 008343 397 CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGG 476 (569)
Q Consensus 397 ~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~~e~~~~~~~d~~~~~p~~~~~~~~~~~~ 476 (569)
.+|+.|++||.+++||++|+||+|.|||++|+++++.+++|++||++|+||+.|++...
T Consensus 309 ~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~--------------------- 367 (427)
T PLN02533 309 GMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATK--------------------- 367 (427)
T ss_pred HHHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCccccccccc---------------------
Confidence 57899999999999999999999999999999999999999999999999998865310
Q ss_pred CcccccccccCCCCCCCCCCCCCCccceeeCCcceEEEEEecCCceEEEEEEecCCcceeeEEEEEEeCC
Q 008343 477 GKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQP 546 (569)
Q Consensus 477 ~~~~~~n~~~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~D~~~i~k~~ 546 (569)
| +.++|+||+||+.+|||++|+|.|.|||+|+|++++|++..+.|+|||.|..
T Consensus 368 ----------------~-~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~ 420 (427)
T PLN02533 368 ----------------Y-IDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLL 420 (427)
T ss_pred ----------------c-CCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEecc
Confidence 1 1367999999999999999999999999999999988877899999999984
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.6e-45 Score=378.48 Aligned_cols=276 Identities=45% Similarity=0.775 Sum_probs=220.4
Q ss_pred CCeEEEEEcccCCC-CChHHHHHHHHh--CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHh
Q 008343 207 YPSRIAIVGDVGLT-YNTTSTVSHMIS--NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRY 283 (569)
Q Consensus 207 ~~~rfavigD~g~~-~~~~~~~~~l~~--~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~ 283 (569)
.++||+++||+|.. .....+++++.+ .+|||||++||++|+.. . ..+.+|+.|.+.
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~-----~----------------~~~~~~~~~~~~ 61 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADG-----Y----------------NNGSRWDTFMRQ 61 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcC-----C----------------ccchhHHHHHHH
Confidence 37999999999973 456778888877 68999999999998642 1 012579999999
Q ss_pred hhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccC---CCCHHHHHH
Q 008343 284 MQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF---DKSGDQYKW 360 (569)
Q Consensus 284 l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~---~~~~~Q~~W 360 (569)
++++...+|+++++||||............+..++.++........+.||+|++|++|||+|||+... ....+|++|
T Consensus 62 ~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~W 141 (294)
T cd00839 62 IEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDW 141 (294)
T ss_pred HHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHH
Confidence 99998899999999999997543221111111122233333334567899999999999999998765 568999999
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCccccc--chHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCc------
Q 008343 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYT------ 432 (569)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~------ 432 (569)
|+++|+++++.+.+|+||++|+|+|+....... .....++.|++||.+|+|+++|+||+|.|+|++|+++++
T Consensus 142 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~ 221 (294)
T cd00839 142 LEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCN 221 (294)
T ss_pred HHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccc
Confidence 999999987667799999999999987544322 245678999999999999999999999999999998855
Q ss_pred --cCCCCCeEEEECCCCccCCcCCCCCCCCCCCCCCCCCCCcccCCCcccccccccCCCCCCCCCCCCCCccceeeCCcc
Q 008343 433 --LDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFG 510 (569)
Q Consensus 433 --~~~~g~vyIv~G~gG~~e~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~n~~~~p~~~~~~~~~~p~~s~~~~~~~G 510 (569)
.+++|++||++|+||+.+..... . ...++|++++...||
T Consensus 222 ~~~~~~g~~yiv~G~~G~~~~~~~~-------------------~--------------------~~~~~~~~~~~~~~g 262 (294)
T cd00839 222 PYSNPKGPVHIVIGAGGNDEGLDPF-------------------S--------------------APPPAWSAFRESDYG 262 (294)
T ss_pred cccCCCccEEEEECCCccccCcCcc-------------------c--------------------CCCCCceEEEeccCC
Confidence 36789999999999997653210 0 012679999999999
Q ss_pred eEEEEEecCCceEEEEEEecCCcceeeEEEEEEe
Q 008343 511 HGILEVKNETHALWTWHRNQDFYEAAGDQIYIVR 544 (569)
Q Consensus 511 ~~~l~v~n~t~~~~~~~~~~~~~~~~~D~~~i~k 544 (569)
|++|+|.|+|+|.|+|+++.++ +++|+|+|+|
T Consensus 263 ~~~~~~~~~t~l~~~~~~~~~g--~v~D~f~i~k 294 (294)
T cd00839 263 FGRLTVHNSTHLHFEWIRNDDG--VVIDSFWIIK 294 (294)
T ss_pred EEEEEEEecCeEEEEEEECCCC--eEEEEEEEeC
Confidence 9999999999999999998877 9999999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=4.4e-32 Score=282.64 Aligned_cols=256 Identities=16% Similarity=0.287 Sum_probs=184.9
Q ss_pred CeEEEEEcccCCCCChHHHHHH-HH----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH-HH
Q 008343 208 PSRIAIVGDVGLTYNTTSTVSH-MI----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY-WG 281 (569)
Q Consensus 208 ~~rfavigD~g~~~~~~~~~~~-l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~-~~ 281 (569)
.++|+++||+|.+...+..+++ |. +.++||||.+||+. .++ -. ....++|.. |.
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~G-----v~--------------sv~Dp~f~~~FE 85 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGG-----VD--------------GLNDPKWKHCFE 85 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCC-----CC--------------CccchhHHhhHh
Confidence 6899999999976555544432 22 35899999999998 432 21 011355655 44
Q ss_pred Hhhhhhh--ccCCcEEecCCccccccccchh--hH------------Hh------hhccCCCCCCCCCCCceeEEE----
Q 008343 282 RYMQPVL--SKVPIMVVEGNHEYEEQAENRT--FV------------AY------TSRFAFPSKESGSLSKFYYSF---- 335 (569)
Q Consensus 282 ~~l~~l~--~~~P~~~v~GNHD~~~~~~~~~--~~------------~y------~~~f~~P~~~~~~~~~~yYsf---- 335 (569)
+...... .++||++++||||+..+...+. +. .| ..||.||. .||.+
T Consensus 86 ~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f 157 (394)
T PTZ00422 86 NVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHF 157 (394)
T ss_pred hhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeee
Confidence 4444433 4799999999999975433211 10 11 24666663 57754
Q ss_pred Ee-------------CcEEEEEEecccc-----C-CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchH
Q 008343 336 NA-------------GGIHFLMLAAYVS-----F-DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAE 396 (569)
Q Consensus 336 ~~-------------G~v~fI~LDt~~~-----~-~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~ 396 (569)
.. ..+.||+|||... + .....|++||+++|+.+ ++.++|+||++|||+|+++.. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~h--g~~~ 234 (394)
T PTZ00422 158 TDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSS--KGDS 234 (394)
T ss_pred ecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCC--CCCH
Confidence 21 2389999999632 1 23578999999999754 356789999999999998753 2345
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCccCCcCCCCCCCCCCCCCCCCCCCcccCC
Q 008343 397 CMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGG 476 (569)
Q Consensus 397 ~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~~e~~~~~~~d~~~~~p~~~~~~~~~~~~ 476 (569)
+++..|++||++|+||++|+||+|.+||.. ++|+.||++|+||+..+...
T Consensus 235 ~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~~---------------------- 284 (394)
T PTZ00422 235 YLSYYLLPLLKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKSI---------------------- 284 (394)
T ss_pred HHHHHHHHHHHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCCC----------------------
Confidence 789999999999999999999999999983 46899999999998543210
Q ss_pred CcccccccccCCCCCCCCCCCCCCccceeeCCcceEEEEEecCCceEEEEEEecCCcceeeEEEEEEeCCC
Q 008343 477 GKFCGFNFTSGPASGKFCWDRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQIYIVRQPD 547 (569)
Q Consensus 477 ~~~~~~n~~~~p~~~~~~~~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~D~~~i~k~~~ 547 (569)
..++|+.|....+||+.+++ +.+.+.++|+.+.+| ++++.+.+.|.+.
T Consensus 285 --------------------~~~~~s~F~~~~~GF~~~~l-~~~~l~~~fid~~~G--kvL~~~~~~~~~~ 332 (394)
T PTZ00422 285 --------------------MKNSKSLFYSEDIGFCIHEL-NAEGMVTKFVSGNTG--EVLYTHKQPLKKR 332 (394)
T ss_pred --------------------CCCCCcceecCCCCEEEEEE-ecCEEEEEEEeCCCC--cEEEEeeecccch
Confidence 12456788888899999998 888999999954455 8999999977654
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.97 E-value=1.5e-30 Score=265.20 Aligned_cols=243 Identities=23% Similarity=0.388 Sum_probs=171.0
Q ss_pred eEEEEEcccCCC-CC-hHHH---HHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH-HHHH
Q 008343 209 SRIAIVGDVGLT-YN-TTST---VSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW-DYWG 281 (569)
Q Consensus 209 ~rfavigD~g~~-~~-~~~~---~~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w-d~~~ 281 (569)
++|+++||+|.. .. ...+ +.++. +.+|||||++||++|+++... .+..+| +.|.
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~-------------------~~~~~~~~~~~ 61 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGS-------------------VDDPRFETTFE 61 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCC-------------------CcchHHHHHHH
Confidence 489999999985 22 2222 23333 368999999999999753210 111233 3455
Q ss_pred HhhhhhhccCCcEEecCCccccccccch-hhHH--hhhccCCCCCCCCCCCceeEEEEeC------cEEEEEEeccccC-
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYEEQAENR-TFVA--YTSRFAFPSKESGSLSKFYYSFNAG------GIHFLMLAAYVSF- 351 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~-~~~~--y~~~f~~P~~~~~~~~~~yYsf~~G------~v~fI~LDt~~~~- 351 (569)
+.++.+..++|+|+++||||+....... .+.. +..++.+ ...||+|+++ +++||+|||....
T Consensus 62 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~--------~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~ 133 (277)
T cd07378 62 DVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTM--------PAYYYRVSFPFPSSDTTVEFIMIDTVPLCG 133 (277)
T ss_pred HHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccC--------cchheEEEeecCCCCCEEEEEEEeChhHcC
Confidence 5555555689999999999997432110 0111 1222222 3579999988 7999999997532
Q ss_pred --------------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEc
Q 008343 352 --------------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNG 417 (569)
Q Consensus 352 --------------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsG 417 (569)
....+|++||+++|+++. .+|+||++|+|+++..... .....++.|++++.+++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~G 208 (277)
T cd07378 134 NSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSG 208 (277)
T ss_pred ccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeC
Confidence 236899999999999864 2799999999999764322 124678999999999999999999
Q ss_pred cccCcceeeccccCccCCCCCeEEEECCCCccCCcCCCCCCCCCCCCCCCCCCCcccCCCcccccccccCCCCCCCCCCC
Q 008343 418 HVHAYERSNRVYNYTLDPCGPVHITVGDGGNREKMAVPHADEPGNCPEPSTTPDKILGGGKFCGFNFTSGPASGKFCWDR 497 (569)
Q Consensus 418 H~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~~e~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~n~~~~p~~~~~~~~~ 497 (569)
|.|.+++..+ +..|+.||++|+||......... ...
T Consensus 209 H~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~~--------------------------------------~~~ 244 (277)
T cd07378 209 HDHNLQHIKD------DGSGTSFVVSGAGSKARPSVKHI--------------------------------------DKV 244 (277)
T ss_pred Ccccceeeec------CCCCcEEEEeCCCcccCCCCCcc--------------------------------------Ccc
Confidence 9999999854 34699999999998864422000 012
Q ss_pred CCCccceeeCCcceEEEEEecCCceEEEEEE
Q 008343 498 QPDYSAFRESSFGHGILEVKNETHALWTWHR 528 (569)
Q Consensus 498 ~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~ 528 (569)
+|.|+.++...+||.+|+|. ...+.++|+.
T Consensus 245 ~~~~~~~~~~~~Gy~~i~v~-~~~l~~~~~~ 274 (277)
T cd07378 245 PQFFSGFTSSGGGFAYLELT-KEELTVRFYD 274 (277)
T ss_pred cccccccccCCCCEEEEEEe-cCEEEEEEEC
Confidence 34677888899999999995 5589999984
No 6
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.97 E-value=2.8e-28 Score=265.37 Aligned_cols=313 Identities=21% Similarity=0.283 Sum_probs=167.1
Q ss_pred cCCC-CceEEEEEcCcccccCCCCCCCCCCCccEEEEcccCCCCc--eEEEeEEEEeeeecccCCccccccCeEEEEEeC
Q 008343 94 SSAH-DSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLN--RKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLT 170 (569)
Q Consensus 94 ~~~p-~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~--~~~~g~~~~y~~~~p~~g~~~~~~~~~h~v~l~ 170 (569)
+||| .+.+|.|++..+.......| ..+..|+|..+.+... .+..+...+ +...+++++|.|+
T Consensus 5 sGdp~~~svilWtR~~~~~~~~~~~----~~~~~V~~~va~d~~~~~~~~~~~~~~-----------~~~~d~t~~v~v~ 69 (453)
T PF09423_consen 5 SGDPTPDSVILWTRVTPPAAAGGMP----KAPVPVRWEVATDPEFSNVVRSGTVTT-----------TAERDFTVKVDVT 69 (453)
T ss_dssp EE---SS-EEEEEE--SBGGTB-------SS-EEEEEEEESSTTSSSEEEEEEEEE------------GGGTTEEEEEE-
T ss_pred ccCCCCCEEEEEEEecCcccCCCCC----CCcEEEEEEEECCCCccceEEecceec-----------ccCCCeEeecccC
Confidence 4667 67899999977631111111 1234566665544433 333333221 1245789999999
Q ss_pred CCCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHh-CCCCEEEEcCCcccccc
Q 008343 171 GLKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMIS-NRPDLILLVGDVTYANL 249 (569)
Q Consensus 171 gL~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~g~~~~~~rfavigD~g~~~~~~~~~~~l~~-~~pDfvl~~GDl~Y~d~ 249 (569)
||+|+|+|+|||..++....|.+++|||+|..... ++||+++||.+.......+++++.+ .+|||+||+||.+|++.
T Consensus 70 gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~--~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~d~ 147 (453)
T PF09423_consen 70 GLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPD--PFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYEDG 147 (453)
T ss_dssp S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS----
T ss_pred CCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCC--ceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeeccC
Confidence 99999999999998654578899999999765433 6999999999886666788899988 69999999999999974
Q ss_pred c--ccCCCCCccccccCC--CCCCccchhHHHHHHH--HhhhhhhccCCcEEecCCcccccccc----------------
Q 008343 250 Y--LTNGTGSDCYACSFA--NSPIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAE---------------- 307 (569)
Q Consensus 250 ~--~~~G~~~~~~~~~~~--~~~~~e~Y~~~wd~~~--~~l~~l~~~~P~~~v~GNHD~~~~~~---------------- 307 (569)
. ..........+...| .....+.|+.+|..+. ..++.+.+++|+++++.+||+.++..
T Consensus 148 ~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~ 227 (453)
T PF09423_consen 148 GGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQD 227 (453)
T ss_dssp TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHH
Confidence 1 000000000000011 1233457888887665 34777889999999999999975532
Q ss_pred --chhhHHhhhccCCCCCC-CCCCCceeEEEEeCc-EEEEEEeccccCC---------------------CCHHHHHHHH
Q 008343 308 --NRTFVAYTSRFAFPSKE-SGSLSKFYYSFNAGG-IHFLMLAAYVSFD---------------------KSGDQYKWLE 362 (569)
Q Consensus 308 --~~~~~~y~~~f~~P~~~-~~~~~~~yYsf~~G~-v~fI~LDt~~~~~---------------------~~~~Q~~WL~ 362 (569)
...+++|.++.++.... .+.....|++|.+|+ +.|++||++.... .+.+|++||+
T Consensus 228 ~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~ 307 (453)
T PF09423_consen 228 RRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLE 307 (453)
T ss_dssp HHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHH
T ss_pred HHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHH
Confidence 01234455544443211 123456799999999 9999999964322 2789999999
Q ss_pred HHHhccccCCCCEEEEEeCCCccccC-----------cccccchHHHHHHHHHHHHHcCCc--EEEEccccCcceee
Q 008343 363 EDLANVEREVTPWLVATWHAPWYSTY-----------KAHYREAECMRVAMEDLLYKYGVD--VVFNGHVHAYERSN 426 (569)
Q Consensus 363 ~~L~~~~~~~~~wvIv~~H~P~y~s~-----------~~~~~~~~~~r~~l~~ll~~~~Vd--lvlsGH~H~yeR~~ 426 (569)
+.|++. .++|+|++.-.|+.... ...|......|++|.++|.+.++. ++|+|++|......
T Consensus 308 ~~L~~s---~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~ 381 (453)
T PF09423_consen 308 DWLASS---QATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASR 381 (453)
T ss_dssp HHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEE
T ss_pred HHHhcC---CCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeee
Confidence 999984 47899999988875432 223555667899999999988875 78999999977664
No 7
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=246.64 Aligned_cols=310 Identities=19% Similarity=0.243 Sum_probs=221.6
Q ss_pred cCCC-CceEEEEEcCcccccCCCCCCCCC-CCccEEEEcccCCCCceEEEeEEEEeeeecccCCccccccCeEEEEEeCC
Q 008343 94 SSAH-DSVWISWITGEFQIGNNLKPLDPK-SVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIHHVRLTG 171 (569)
Q Consensus 94 ~~~p-~s~~I~W~T~~~~~g~~~~~~~p~-~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~p~~g~~~~~~~~~h~v~l~g 171 (569)
++|| ...+|.|++-+|. |++-. .++..+++++.++..+.+..|+..+ .-..++.++|.+.|
T Consensus 45 SGDp~~~svviWTRl~P~------p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a-----------~p~~dhtv~v~~~g 107 (522)
T COG3540 45 SGDPTATSVVIWTRLDPE------PLNGGRPVPVIWEVSTDENFSNIVRKGTVIA-----------SPELDHTVHVDLRG 107 (522)
T ss_pred cCCCCCCeEEEEEccCCc------cccCCCCcceEEEecCCccHHHHHhcCCccC-----------CcccCceEEEeccC
Confidence 4778 6799999998763 22212 3455677777666555444343221 12356899999999
Q ss_pred CCCCCEEEEEEecCCCCCccceeEEEcCCCCCCCCCCeEEEEEcccCCCCChHHHHHHHHhCCCCEEEEcCCcccccccc
Q 008343 172 LKPDTLYHYQCGDPSIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYL 251 (569)
Q Consensus 172 L~P~T~Y~Yrvg~~~~~~~S~~~~F~T~P~~g~~~~~~rfavigD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Y~d~~~ 251 (569)
|+|++.|+||+...+ ..|.+++|||+|..+....-++|++.++.|...+...+.++|.+.+||||||+||.+|+++..
T Consensus 108 L~P~~~yfYRf~~~~--~~spvGrtrTapa~~~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 108 LSPDQDYFYRFKAGD--ERSPVGRTRTAPAPGRAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred CCCCceEEEEEeeCC--ccccccccccCCCCCCcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeeccCCc
Confidence 999999999999887 778999999999988765566777777778777788899999999999999999999997532
Q ss_pred cCCCCCccccc-cCCCC-----CCccchhHHHHHHH--HhhhhhhccCCcEEecCCcccccccc----------------
Q 008343 252 TNGTGSDCYAC-SFANS-----PIHETYQPRWDYWG--RYMQPVLSKVPIMVVEGNHEYEEQAE---------------- 307 (569)
Q Consensus 252 ~~G~~~~~~~~-~~~~~-----~~~e~Y~~~wd~~~--~~l~~l~~~~P~~~v~GNHD~~~~~~---------------- 307 (569)
..-........ .-++. ...++|+.+|..++ ..++...+..||++.|.+||+.++..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~ 265 (522)
T COG3540 186 PDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFV 265 (522)
T ss_pred ccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHH
Confidence 11000000000 11111 12358999998876 45777889999999999999986521
Q ss_pred ---chhhHHhhhccCCCCCCCCCCCceeEEEEeCc-EEEEEEeccccC------C----------------CCHHHHHHH
Q 008343 308 ---NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGG-IHFLMLAAYVSF------D----------------KSGDQYKWL 361 (569)
Q Consensus 308 ---~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~-v~fI~LDt~~~~------~----------------~~~~Q~~WL 361 (569)
...+++|.+++++...........|.+|.+|+ +.|.+||++... + .+.+|.+||
T Consensus 266 ~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWL 345 (522)
T COG3540 266 LRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWL 345 (522)
T ss_pred HHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHH
Confidence 12346777776554433223468999999998 789999997544 1 278999999
Q ss_pred HHHHhccccCCCCEEEEEeCCCcccc----C---------cccccchHHHHHHHHHHHHHcCCc--EEEEccccCccee
Q 008343 362 EEDLANVEREVTPWLVATWHAPWYST----Y---------KAHYREAECMRVAMEDLLYKYGVD--VVFNGHVHAYERS 425 (569)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s----~---------~~~~~~~~~~r~~l~~ll~~~~Vd--lvlsGH~H~yeR~ 425 (569)
++.|.+ +++.|.|+....|+--- . ...+..+..-|+.|...+.+.++. ++|.|++|...-.
T Consensus 346 k~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~wA~ 421 (522)
T COG3540 346 KRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSWAH 421 (522)
T ss_pred Hhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHHHh
Confidence 999999 67889999988886311 1 112334455689999999999876 8999999975544
No 8
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=7.9e-27 Score=236.08 Aligned_cols=205 Identities=23% Similarity=0.367 Sum_probs=148.1
Q ss_pred CCeEEEEEcccCCCCC-----------------hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCC
Q 008343 207 YPSRIAIVGDVGLTYN-----------------TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANS 267 (569)
Q Consensus 207 ~~~rfavigD~g~~~~-----------------~~~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~ 267 (569)
.+++|+++||+|.+.. ...+++.+.+. +||||+++||+++.. ..
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~------~~----------- 65 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAM------PG----------- 65 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCC------cc-----------
Confidence 3799999999998731 12334555555 899999999999642 10
Q ss_pred CCccchhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEec
Q 008343 268 PIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAA 347 (569)
Q Consensus 268 ~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt 347 (569)
.+..+.+|+.+.+.++.+...+|+++++||||+........+..|...| +..||+|++|+++||+|||
T Consensus 66 --~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds 133 (262)
T cd07395 66 --DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVF----------GDDYFSFWVGGVFFIVLNS 133 (262)
T ss_pred --hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHh----------CCcceEEEECCEEEEEecc
Confidence 1111245667777777766689999999999986433333344454444 2358999999999999999
Q ss_pred cccC------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccc----cchHHHHHHHHHHHHHcCCcEEEEc
Q 008343 348 YVSF------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY----REAECMRVAMEDLLYKYGVDVVFNG 417 (569)
Q Consensus 348 ~~~~------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~----~~~~~~r~~l~~ll~~~~VdlvlsG 417 (569)
.... ....+|++||+++|+++.+.+.+|+||++|+|++....... ......+.++.++|++++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 134 QLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred ccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEEC
Confidence 6432 23579999999999997644567899999999986432211 1234568899999999999999999
Q ss_pred cccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 418 HVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 418 H~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
|+|.+.+.. -.|+.+++++++|.
T Consensus 214 H~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 214 HYHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred ccccCCceE--------ECCEEEEEcCceec
Confidence 999987752 24777888777765
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.91 E-value=6e-23 Score=204.59 Aligned_cols=192 Identities=21% Similarity=0.331 Sum_probs=135.9
Q ss_pred EEEEEcccCCCCCh-------------HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008343 210 RIAIVGDVGLTYNT-------------TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (569)
Q Consensus 210 rfavigD~g~~~~~-------------~~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (569)
||++++|+|.+... .++++.+.+. +||+||++||+++. +. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~------~~------------------~ 56 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD------GS------------------P 56 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC------CC------------------H
Confidence 69999999987431 2345555565 89999999999953 22 1
Q ss_pred HHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccC---
Q 008343 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--- 351 (569)
Q Consensus 275 ~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~--- 351 (569)
..|+.+.+.++.+ ++|+++++||||... .+ ...|..... .....+|+|+.++++||+||+....
T Consensus 57 ~~~~~~~~~l~~~--~~p~~~v~GNHD~~~-----~~---~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~ 123 (240)
T cd07402 57 ESYERLRELLAAL--PIPVYLLPGNHDDRA-----AM---RAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHG 123 (240)
T ss_pred HHHHHHHHHHhhc--CCCEEEeCCCCCCHH-----HH---HHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcC
Confidence 3455666667666 899999999999842 12 222211100 2345688999999999999986432
Q ss_pred -CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccc-hHHHHHHHHHHHHHc-CCcEEEEccccCcceeecc
Q 008343 352 -DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKY-GVDVVFNGHVHAYERSNRV 428 (569)
Q Consensus 352 -~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~~v 428 (569)
....+|++||++.|++.. ..++|+++|+|++......... ....++++.+++.++ +|+++|+||+|......
T Consensus 124 ~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~-- 198 (240)
T cd07402 124 GELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS-- 198 (240)
T ss_pred CEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE--
Confidence 236899999999999864 2357888899887643211111 112367899999999 99999999999976653
Q ss_pred ccCccCCCCCeEEEECCCCcc
Q 008343 429 YNYTLDPCGPVHITVGDGGNR 449 (569)
Q Consensus 429 ~n~~~~~~g~vyIv~G~gG~~ 449 (569)
-+|+.++++|+.|..
T Consensus 199 ------~~g~~~~~~gs~~~~ 213 (240)
T cd07402 199 ------WGGIPLLTAPSTCHQ 213 (240)
T ss_pred ------ECCEEEEEcCcceee
Confidence 368889998888773
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=5.5e-23 Score=208.68 Aligned_cols=198 Identities=20% Similarity=0.282 Sum_probs=137.0
Q ss_pred eEEEEEcccCCCCCh--------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008343 209 SRIAIVGDVGLTYNT--------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (569)
Q Consensus 209 ~rfavigD~g~~~~~--------------~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (569)
|||++++|+|..... .++++++.+.+||+||++||+++. |.. ..+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~------~~~---------------~~~ 59 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDG------DNA---------------RAE 59 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecC------CCc---------------hHH
Confidence 699999999965421 234566666789999999999953 210 012
Q ss_pred HHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc----
Q 008343 275 PRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS---- 350 (569)
Q Consensus 275 ~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~---- 350 (569)
..|+.+.+.++.+ ++|+++++||||...... .+.. +... ...+..||+|++++++||+||+...
T Consensus 60 ~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~-----~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~ 127 (267)
T cd07396 60 EALDAVLAILDRL--KGPVHHVLGNHDLYNPSR-----EYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALG 127 (267)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCccccccccH-----hhhh-cccc----cCCCCceEEEecCCcEEEEEeCCcccccc
Confidence 4566666666665 689999999999864321 1111 0001 1234579999999999999999531
Q ss_pred ------------------------------CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHH
Q 008343 351 ------------------------------FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRV 400 (569)
Q Consensus 351 ------------------------------~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~ 400 (569)
.....+|++||+++|+++..+. .++||++|+|++...... ......++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~-~~viV~~Hhp~~~~~~~~-~~~~~~~~ 205 (267)
T cd07396 128 RPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG-EKVIIFSHFPLHPESTSP-HGLLWNHE 205 (267)
T ss_pred CCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCCCc-cccccCHH
Confidence 1235899999999999875332 458999999987654211 11112357
Q ss_pred HHHHHHHHc-CCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCcc
Q 008343 401 AMEDLLYKY-GVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGNR 449 (569)
Q Consensus 401 ~l~~ll~~~-~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~~ 449 (569)
.+.+++.++ +|+++|+||+|.++... .+|+.|+++|+-...
T Consensus 206 ~~~~ll~~~~~V~~v~~GH~H~~~~~~--------~~gi~~~~~~a~~~~ 247 (267)
T cd07396 206 EVLSILRAYGCVKACISGHDHEGGYAQ--------RHGIHFLTLEGMVET 247 (267)
T ss_pred HHHHHHHhCCCEEEEEcCCcCCCCccc--------cCCeeEEEechhhcC
Confidence 788999996 89999999999987652 468999988776553
No 11
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.6e-22 Score=195.61 Aligned_cols=203 Identities=21% Similarity=0.313 Sum_probs=134.4
Q ss_pred CeEEEEEcccCCCCC--hHHHHH---HHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHH-HH
Q 008343 208 PSRIAIVGDVGLTYN--TTSTVS---HMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWD-YW 280 (569)
Q Consensus 208 ~~rfavigD~g~~~~--~~~~~~---~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd-~~ 280 (569)
.++|+++||+|.... ...+.. .|. +.+.||||.+||++|.++..+. +.+++. .|
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~-------------------~Dp~Fq~sF 103 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSE-------------------NDPRFQDSF 103 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCC-------------------CChhHHhhh
Confidence 699999999995532 222222 232 3589999999999997643211 112222 22
Q ss_pred HHhhhhhhccCCcEEecCCccccccccch---hhHHhhhccCCCCCCCCCCCceeE--E----EEeCcEEEEEEeccccC
Q 008343 281 GRYMQPVLSKVPIMVVEGNHEYEEQAENR---TFVAYTSRFAFPSKESGSLSKFYY--S----FNAGGIHFLMLAAYVSF 351 (569)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~~~~~~~---~~~~y~~~f~~P~~~~~~~~~~yY--s----f~~G~v~fI~LDt~~~~ 351 (569)
.+....-..+.||+.+.||||+.++...+ .++....||..|. .|| + +..-++.++|+|+....
T Consensus 104 ~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~r--------sf~~~ae~ve~f~v~~~~f~~d~~~~~ 175 (336)
T KOG2679|consen 104 ENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPR--------SFYVDAEIVEMFFVDTTPFMDDTFTLC 175 (336)
T ss_pred hhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceeccc--------HHhhcceeeeeeccccccchhhheecc
Confidence 23322222356999999999998664322 2444555665443 122 0 11123455555553211
Q ss_pred -------C-------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEc
Q 008343 352 -------D-------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNG 417 (569)
Q Consensus 352 -------~-------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsG 417 (569)
. ....++.||+..|++ +.++|+||++|||+.+.+ +.+...|+++.|.+||+.++||++++|
T Consensus 176 ~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~nG 250 (336)
T KOG2679|consen 176 TDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYING 250 (336)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEec
Confidence 1 136788999999999 467899999999998864 345678999999999999999999999
Q ss_pred cccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 418 HVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 418 H~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
|+|..|..-- ...++-|+++|+|..
T Consensus 251 HDHcLQhis~------~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 251 HDHCLQHISS------PESGIQFVTSGAGSK 275 (336)
T ss_pred chhhhhhccC------CCCCeeEEeeCCccc
Confidence 9999999742 134666777777755
No 12
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.87 E-value=1.5e-20 Score=191.76 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=121.8
Q ss_pred CeEEEEEcccCCCC---------C----hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccc
Q 008343 208 PSRIAIVGDVGLTY---------N----TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHET 272 (569)
Q Consensus 208 ~~rfavigD~g~~~---------~----~~~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~ 272 (569)
++||++++|+|... + ..++++++.+. +|||||++||++.. |.
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~------~~----------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD------HS----------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC------CC-----------------
Confidence 79999999999742 1 12345555543 68999999999952 22
Q ss_pred hhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc--
Q 008343 273 YQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-- 350 (569)
Q Consensus 273 Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~-- 350 (569)
...+..+.+.++.+ ++|+++++||||... .+..+.....+ ...++.+..++++||+||+...
T Consensus 71 -~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~ 134 (275)
T PRK11148 71 -SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGV 134 (275)
T ss_pred -HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCC
Confidence 12345556666666 689999999999852 12222211111 1123334455799999999643
Q ss_pred --CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCccccc-chHHHHHHHHHHHHHc-CCcEEEEccccCcceee
Q 008343 351 --FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYR-EAECMRVAMEDLLYKY-GVDVVFNGHVHAYERSN 426 (569)
Q Consensus 351 --~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~-~~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~ 426 (569)
...+.+|++||+++|++...+ +-+|++.|+|+... ..... ......+++.+++++| +|+++|+||+|.....
T Consensus 135 ~~G~l~~~ql~wL~~~L~~~~~~--~~vv~~hH~P~~~~-~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~- 210 (275)
T PRK11148 135 PHGELSEYQLEWLERKLADAPER--HTLVLLHHHPLPAG-CAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDL- 210 (275)
T ss_pred cCCEeCHHHHHHHHHHHhhCCCC--CeEEEEcCCCCCCC-cchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhc-
Confidence 224689999999999986432 22444444555432 11100 0111346899999998 8999999999986543
Q ss_pred ccccCccCCCCCeEEEECCCCc
Q 008343 427 RVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 427 ~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
.-+|+.++++++.+.
T Consensus 211 -------~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 -------DWNGRRLLATPSTCV 225 (275)
T ss_pred -------eECCEEEEEcCCCcC
Confidence 235887777666654
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.85 E-value=3.7e-20 Score=186.77 Aligned_cols=192 Identities=18% Similarity=0.244 Sum_probs=125.5
Q ss_pred EEEEcccCCCCChH--------HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008343 211 IAIVGDVGLTYNTT--------STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (569)
Q Consensus 211 favigD~g~~~~~~--------~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (569)
|++++|+|.+.... .+++.+.+.+||+||++||++.... ..+. ....++.+|+.|.+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~--~~~~-------------~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKT--GNKL-------------PSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccc--cCCC-------------cccccHHHHHHHHH
Confidence 78999999874321 1234555679999999999995321 0110 01223567888877
Q ss_pred hhhhhh--ccCCcEEecCCccccccccchhhHHhhhcc-CCCCCCCCCCCceeE--EEEeCcEEEEEEecccc-------
Q 008343 283 YMQPVL--SKVPIMVVEGNHEYEEQAENRTFVAYTSRF-AFPSKESGSLSKFYY--SFNAGGIHFLMLAAYVS------- 350 (569)
Q Consensus 283 ~l~~l~--~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f-~~P~~~~~~~~~~yY--sf~~G~v~fI~LDt~~~------- 350 (569)
.+.... ...|++.++||||..+.........|..+| .... ....+| .++.|+++||+|||...
T Consensus 67 ~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~ 141 (256)
T cd07401 67 ILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPF 141 (256)
T ss_pred HHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCC
Confidence 765543 258999999999996432222222222222 1111 112233 33458999999999642
Q ss_pred ---CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeec
Q 008343 351 ---FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNR 427 (569)
Q Consensus 351 ---~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~ 427 (569)
.....+|++||+++|++..+ .+++||++|+|++...... . ...+ .+.++|++++|+++||||+|.+++..|
T Consensus 142 ~~~g~l~~~ql~wL~~~L~~~~~--~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p 215 (256)
T cd07401 142 NFFGSLDKKLLDRLEKELEKSTN--SNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEP 215 (256)
T ss_pred ceeccCCHHHHHHHHHHHHhccc--CCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCCccCCCccee
Confidence 22468999999999998642 3579999999986532211 1 1122 389999999999999999999999655
Q ss_pred c
Q 008343 428 V 428 (569)
Q Consensus 428 v 428 (569)
+
T Consensus 216 ~ 216 (256)
T cd07401 216 V 216 (256)
T ss_pred e
Confidence 4
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.78 E-value=1.9e-18 Score=169.64 Aligned_cols=149 Identities=20% Similarity=0.263 Sum_probs=107.3
Q ss_pred eEEEEEcccCCCCCh-----HH----HHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH
Q 008343 209 SRIAIVGDVGLTYNT-----TS----TVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (569)
Q Consensus 209 ~rfavigD~g~~~~~-----~~----~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~ 279 (569)
|||++++|+|..... .+ +++.+.+.+||+|+++||+++. +. ...+|+.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~------~~-----------------~~~~~~~ 57 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDD------GD-----------------NDAEWEA 57 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCC------CC-----------------CHHHHHH
Confidence 689999999975431 12 2334445689999999999963 11 0246788
Q ss_pred HHHhhhhhh-ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHH
Q 008343 280 WGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (569)
Q Consensus 280 ~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~ 358 (569)
+.+.++.+. ..+|+++++||||. ++.+|+. ...+|+
T Consensus 58 ~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~~----~~~~ql 94 (214)
T cd07399 58 ADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEFG----PRDEVL 94 (214)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCCC----CCHHHH
Confidence 888888876 67999999999991 2333332 358999
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCcccccc-----hHHHHHHHHHHHHHc-CCcEEEEccccCcceee
Q 008343 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-----AECMRVAMEDLLYKY-GVDVVFNGHVHAYERSN 426 (569)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-----~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR~~ 426 (569)
+||++.|++.. ..++|+++|+|++......... ....++.|+++++++ +|+++|+||.|.+.+..
T Consensus 95 ~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 95 QWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred HHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 99999999854 2358999999988654321111 123456788999999 79999999999998875
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.76 E-value=1.4e-17 Score=171.64 Aligned_cols=192 Identities=20% Similarity=0.280 Sum_probs=125.8
Q ss_pred EEcccCCCCC---hHHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH--HHHHHHHhhh
Q 008343 213 IVGDVGLTYN---TTSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP--RWDYWGRYMQ 285 (569)
Q Consensus 213 vigD~g~~~~---~~~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~--~wd~~~~~l~ 285 (569)
-+|+.++... ..++++.+.+. +|||||++||+++.+.+.. ..+ ... .+..+.+.++
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~----------------~~~-~~~~~~~~~~~~~l~ 104 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQ----------------TPE-TLVLISISNLTSLLK 104 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhh----------------chh-HHHHHHHHHHHHHHH
Confidence 3566664432 23566677766 8999999999997542200 000 011 2445556677
Q ss_pred hhhccCCcEEecCCcccccccc-------chhhHHhhhccC--CCCCCC-CCCCceeEEEE-eCcEEEEEEeccccC---
Q 008343 286 PVLSKVPIMVVEGNHEYEEQAE-------NRTFVAYTSRFA--FPSKES-GSLSKFYYSFN-AGGIHFLMLAAYVSF--- 351 (569)
Q Consensus 286 ~l~~~~P~~~v~GNHD~~~~~~-------~~~~~~y~~~f~--~P~~~~-~~~~~~yYsf~-~G~v~fI~LDt~~~~--- 351 (569)
.....+|+++++||||...... ...+..+...|. ++.+.. ......||++. .++++||+|||....
T Consensus 105 ~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~ 184 (296)
T cd00842 105 KAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKN 184 (296)
T ss_pred HhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccC
Confidence 6667899999999999975321 112222222221 222110 11245789998 889999999996432
Q ss_pred --------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcC--CcEEEEccccC
Q 008343 352 --------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHA 421 (569)
Q Consensus 352 --------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~ 421 (569)
....+|++||+++|+++++++. .+||++|+|+....... ....++++.+|+.+|. |.++|+||+|.
T Consensus 185 ~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~-~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~ 260 (296)
T cd00842 185 FWLLGSNETDPAGQLQWLEDELQEAEQAGE-KVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHR 260 (296)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeeccccc
Confidence 2347899999999999865443 47788999987653221 1345788999999997 77899999999
Q ss_pred ccee
Q 008343 422 YERS 425 (569)
Q Consensus 422 yeR~ 425 (569)
.+..
T Consensus 261 d~~~ 264 (296)
T cd00842 261 DEFR 264 (296)
T ss_pred ceEE
Confidence 7665
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.71 E-value=4.6e-17 Score=149.84 Aligned_cols=191 Identities=23% Similarity=0.292 Sum_probs=100.8
Q ss_pred eEEEEEcccCCCCChH----H-HHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH-H
Q 008343 209 SRIAIVGDVGLTYNTT----S-TVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG-R 282 (569)
Q Consensus 209 ~rfavigD~g~~~~~~----~-~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~-~ 282 (569)
+||+++||+|...... . ......+.++|+||++||+++.. .. ...+.... .
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~------~~-----------------~~~~~~~~~~ 57 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGG------NP-----------------SEEWRAQFWF 57 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSS------SH-----------------HHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccc------cc-----------------cccchhhhcc
Confidence 6999999999885533 2 23344567999999999999742 10 01111111 1
Q ss_pred hhhhhhccCCcEEecCCccccccccchhhHHhhhccCC-CCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHH
Q 008343 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAF-PSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (569)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~-P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL 361 (569)
.........|+++++||||+...........+...... .....................+..............+..|+
T Consensus 58 ~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (200)
T PF00149_consen 58 FIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWW 137 (200)
T ss_dssp HHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHH
T ss_pred chhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcc
Confidence 23334568999999999999743221111111111100 00000000000011122222222222211112222333333
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCccccc--chHHHHHHHHHHHHHcCCcEEEEccccCc
Q 008343 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYR--EAECMRVAMEDLLYKYGVDVVFNGHVHAY 422 (569)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~--~~~~~r~~l~~ll~~~~VdlvlsGH~H~y 422 (569)
...+....+...+++|+++|+|++........ .....++.+..++.+++|+++|+||+|.|
T Consensus 138 ~~~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 138 LWLLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 33322222344678999999999987543211 01235788899999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.67 E-value=2e-15 Score=152.08 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=110.2
Q ss_pred HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCcccc
Q 008343 225 STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 225 ~~~~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
+.+..+.+ .+||+||++||++.. |... ..+.+...++.|.+.+..+....|++.++||||+.
T Consensus 35 ~~~~~~~~~l~PD~vv~lGDL~d~------G~~~-----------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 35 RNWRYMQKQLKPDSTIFLGDLFDG------GRDW-----------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred HHHHHHHHhcCCCEEEEecccccC------CeeC-----------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 34444443 589999999999853 3210 01112222333444444433357999999999985
Q ss_pred cccc--chhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc-----CCCCHHHHHHHHHHHhccccCCCCEE
Q 008343 304 EQAE--NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-----FDKSGDQYKWLEEDLANVEREVTPWL 376 (569)
Q Consensus 304 ~~~~--~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~-----~~~~~~Q~~WL~~~L~~~~~~~~~wv 376 (569)
.... ......|.+.|. ..+|+|++|+++||+||+... .....+|.+||++.|+..... . .+
T Consensus 98 ~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-~-p~ 165 (257)
T cd08163 98 FGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKS-K-PR 165 (257)
T ss_pred CCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCC-C-cE
Confidence 3321 123456666663 235789999999999999632 224568999999999875432 2 38
Q ss_pred EEEeCCCccccCccccc---c------------hH-HH-HHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 377 VATWHAPWYSTYKAHYR---E------------AE-CM-RVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 377 Iv~~H~P~y~s~~~~~~---~------------~~-~~-r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
|+++|+|+|.......+ + ++ .+ .+.-..||...+..+||+||+|.|=...
T Consensus 166 ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 166 ILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred EEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 99999999865321100 0 00 11 2444477888899999999999986653
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.65 E-value=4.6e-15 Score=147.55 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=116.3
Q ss_pred EEEEcccCCCC--------C---hHHHHHHHHhC------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccch
Q 008343 211 IAIVGDVGLTY--------N---TTSTVSHMISN------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (569)
Q Consensus 211 favigD~g~~~--------~---~~~~~~~l~~~------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y 273 (569)
+.+++|+|... - ..+.++.+.+. +||+||++||+++. +. +
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~------~~-----------------~ 57 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA------MK-----------------L 57 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC------CC-----------------h
Confidence 35788999762 1 13444444443 89999999999842 11 0
Q ss_pred hHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc-C-
Q 008343 274 QPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS-F- 351 (569)
Q Consensus 274 ~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~-~- 351 (569)
.......+.++.+ ..|+++|+||||+... .. ..+.+.+. .. +.......++.++++.|++++.... +
T Consensus 58 -~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~-~~---~~~~~~l~--~~--~~~~~~n~~~~~~~i~i~G~~~~~~~~~ 126 (232)
T cd07393 58 -EEAKLDLAWIDAL--PGTKVLLKGNHDYWWG-SA---SKLRKALE--ES--RLALLFNNAYIDDDVAICGTRGWDNPGN 126 (232)
T ss_pred -HHHHHHHHHHHhC--CCCeEEEeCCccccCC-CH---HHHHHHHH--hc--CeEEeccCcEEECCEEEEEEEeeCCCCC
Confidence 1122223344443 3578999999998421 11 22222111 00 0000012345668899998863211 0
Q ss_pred ---------------CCCHHHHHHHHHHHhccccCC-CCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEE
Q 008343 352 ---------------DKSGDQYKWLEEDLANVEREV-TPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVF 415 (569)
Q Consensus 352 ---------------~~~~~Q~~WL~~~L~~~~~~~-~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~Vdlvl 415 (569)
....+|++||++.|+++.... ..++|+++|+|++..... .+.+..++++++++++|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl 198 (232)
T cd07393 127 PWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICV 198 (232)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEE
Confidence 013569999999999864332 246899999998764321 23567888999999999
Q ss_pred EccccCcceeeccccCccCCCCCeEEEECCC
Q 008343 416 NGHVHAYERSNRVYNYTLDPCGPVHITVGDG 446 (569)
Q Consensus 416 sGH~H~yeR~~~v~n~~~~~~g~vyIv~G~g 446 (569)
+||+|.+++..|+.. .-+|+.|+++.++
T Consensus 199 ~GH~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 199 YGHLHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred ECCCCCCcccccccc---eECCEEEEEEcch
Confidence 999999998765532 2457777776554
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.62 E-value=4e-15 Score=144.40 Aligned_cols=150 Identities=20% Similarity=0.255 Sum_probs=95.7
Q ss_pred CeEEEEEcccCCCCCh------------HHHHHH-HHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008343 208 PSRIAIVGDVGLTYNT------------TSTVSH-MISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (569)
Q Consensus 208 ~~rfavigD~g~~~~~------------~~~~~~-l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (569)
.+||++++|+|..... ...+.+ +.+.+||+||++||+++.... .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~-------------------~~--- 59 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT-------------------ND--- 59 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC-------------------ch---
Confidence 5899999999986432 122333 334689999999999974210 00
Q ss_pred HHHHHHHHhhhhhh-ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCC
Q 008343 275 PRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK 353 (569)
Q Consensus 275 ~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~ 353 (569)
..+..+.++++.+. .++|+++++||||. ....
T Consensus 60 ~~~~~~~~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~l 92 (199)
T cd07383 60 NSTSALDKAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDWI 92 (199)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCCC
Confidence 01233444444443 37999999999990 1123
Q ss_pred CHHHHHHHHHHHhccc--cCCCCEEEEEeCCCccccCcc---------cccc---hHHHHHHHH-HHHHHcCCcEEEEcc
Q 008343 354 SGDQYKWLEEDLANVE--REVTPWLVATWHAPWYSTYKA---------HYRE---AECMRVAME-DLLYKYGVDVVFNGH 418 (569)
Q Consensus 354 ~~~Q~~WL~~~L~~~~--~~~~~wvIv~~H~P~y~s~~~---------~~~~---~~~~r~~l~-~ll~~~~VdlvlsGH 418 (569)
...|++||+++|++.. +....+.++++|+|+...... ...+ .......+. .+.+..+|+++|+||
T Consensus 93 ~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH 172 (199)
T cd07383 93 RPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGH 172 (199)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCC
Confidence 4789999999999863 223457899999997653211 1111 001123333 444667899999999
Q ss_pred ccCcceee
Q 008343 419 VHAYERSN 426 (569)
Q Consensus 419 ~H~yeR~~ 426 (569)
+|.++...
T Consensus 173 ~H~~~~~~ 180 (199)
T cd07383 173 DHGNDFCG 180 (199)
T ss_pred CCCcceec
Confidence 99987654
No 20
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.60 E-value=1e-14 Score=145.78 Aligned_cols=176 Identities=15% Similarity=0.203 Sum_probs=107.3
Q ss_pred EEEEEcccCCCCCh---H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008343 210 RIAIVGDVGLTYNT---T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (569)
Q Consensus 210 rfavigD~g~~~~~---~----~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (569)
||++++|+|..... . ..++.+.+.++|+||++||++.. .. +...+.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~------~~--------------------~~~~~~~ 54 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND------FQ--------------------RSLPFIE 54 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc------hh--------------------hHHHHHH
Confidence 58999999975322 2 34555667789999999999942 00 1112233
Q ss_pred hhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCC----------
Q 008343 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFD---------- 352 (569)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~---------- 352 (569)
.+..+ ...|++.++||||+..... +..+.+.+. + ....+.++.+..++++|++++.+.++.
T Consensus 55 ~l~~~-~~~pv~~v~GNHD~~~~~~---~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 55 KLQEL-KGIKVTFNAGNHDMLKDLT---YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred HHHHh-cCCcEEEECCCCCCCCCCC---HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 33322 3689999999999852211 122222110 0 011223334444778888888533320
Q ss_pred ---------------------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCc------ccccchH--HHHHHHH
Q 008343 353 ---------------------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYK------AHYREAE--CMRVAME 403 (569)
Q Consensus 353 ---------------------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~------~~~~~~~--~~r~~l~ 403 (569)
...+|++||++.|++...+ .+|+++|+|+..... ..+.... .....|.
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~---~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~ 202 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDNK---QVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFG 202 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCCC---CEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHH
Confidence 1367899999999886432 278888888754211 1121111 1247888
Q ss_pred HHHHHcCCcEEEEccccCcc
Q 008343 404 DLLYKYGVDVVFNGHVHAYE 423 (569)
Q Consensus 404 ~ll~~~~VdlvlsGH~H~ye 423 (569)
+++++++++++|+||+|.-.
T Consensus 203 ~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 203 QLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHhCCCEEEECCccCCC
Confidence 99999999999999999865
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.60 E-value=2.2e-14 Score=137.01 Aligned_cols=167 Identities=20% Similarity=0.211 Sum_probs=102.1
Q ss_pred EEEEcccCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhcc
Q 008343 211 IAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSK 290 (569)
Q Consensus 211 favigD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~ 290 (569)
|+++||+|........ ..+.+.++|+||++||+++. +. .+.| ..+ +.++.+ +
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~------~~--------------~~~~----~~~-~~l~~~--~ 52 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNF------GG--------------KEAA----VEI-NLLLAI--G 52 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCc------CC--------------HHHH----HHH-HHHHhc--C
Confidence 5789999986433222 34456689999999999852 22 0111 111 334433 7
Q ss_pred CCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc------CCCCHHHHHHHHHH
Q 008343 291 VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS------FDKSGDQYKWLEED 364 (569)
Q Consensus 291 ~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~------~~~~~~Q~~WL~~~ 364 (569)
.|+++++||||.... .......... ..+ ..+.++++.|+++++... .....+|++|+ +.
T Consensus 53 ~p~~~v~GNHD~~~~-----~~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~ 117 (188)
T cd07392 53 VPVLAVPGNCDTPEI-----LGLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GR 117 (188)
T ss_pred CCEEEEcCCCCCHHH-----HHhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hh
Confidence 899999999997421 1111000000 011 235578899999987421 23357899998 44
Q ss_pred HhccccCCCCEEEEEeCCCccccCcc-cccchHHHHHHHHHHHHHcCCcEEEEccccCcc
Q 008343 365 LANVEREVTPWLVATWHAPWYSTYKA-HYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (569)
Q Consensus 365 L~~~~~~~~~wvIv~~H~P~y~s~~~-~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (569)
|.... .+..|+++|+|++..... .......-.+.+.+++++++++++|+||+|.-.
T Consensus 118 l~~~~---~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 118 LNNLL---AKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred hhccC---CCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 44422 234888999998763111 111111224678889999999999999999864
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.59 E-value=2.7e-14 Score=151.80 Aligned_cols=94 Identities=22% Similarity=0.336 Sum_probs=71.8
Q ss_pred CceeEEEE-eCcEEEEEEecccc-----CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccc-----cchHH
Q 008343 329 SKFYYSFN-AGGIHFLMLAAYVS-----FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY-----REAEC 397 (569)
Q Consensus 329 ~~~yYsf~-~G~v~fI~LDt~~~-----~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~-----~~~~~ 397 (569)
+..||+|+ .++++||+|||... .....+|++||+++|++. ..+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 89999999999643 234799999999999974 235699999999886532111 01112
Q ss_pred HHHHHHHHHHHc-CCcEEEEccccCccee
Q 008343 398 MRVAMEDLLYKY-GVDVVFNGHVHAYERS 425 (569)
Q Consensus 398 ~r~~l~~ll~~~-~VdlvlsGH~H~yeR~ 425 (569)
..++|.++|.+| +|.++|+||.|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 357899999998 7999999999987654
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.53 E-value=2.4e-13 Score=138.88 Aligned_cols=179 Identities=25% Similarity=0.331 Sum_probs=117.5
Q ss_pred eEEEEEcccCCC--CC-hH----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008343 209 SRIAIVGDVGLT--YN-TT----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (569)
Q Consensus 209 ~rfavigD~g~~--~~-~~----~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (569)
+||++++|.|.. .. .. .+++.+...+||+||++||+++. |. ...++...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~------~~------------------~~~~~~~~ 56 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND------GE------------------PEEYRRLK 56 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC------CC------------------HHHHHHHH
Confidence 589999999988 22 22 33455666789999999999963 32 12334455
Q ss_pred HhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEe-CcEEEEEEecccc----CCCCHH
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVS----FDKSGD 356 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~-G~v~fI~LDt~~~----~~~~~~ 356 (569)
++++.+....|++++|||||..... ...+...+.... ..+..... ++++++.+|+... ...+..
T Consensus 57 ~~l~~~~~~~~~~~vpGNHD~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~ 125 (301)
T COG1409 57 ELLARLELPAPVIVVPGNHDARVVN----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAE 125 (301)
T ss_pred HHHhhccCCCceEeeCCCCcCCchH----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHH
Confidence 6666444578999999999986432 222323321110 11111222 6789999999744 235799
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcC--CcEEEEccccCc
Q 008343 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHAY 422 (569)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~y 422 (569)
|++||++.|++........+|+++|+|..................+..++..++ |+++|+||.|.-
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 999999999986543112467888888776443332222233456677888888 999999999976
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.49 E-value=3.1e-13 Score=123.94 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=90.4
Q ss_pred EEEEcccCCCCChH-----------HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHH
Q 008343 211 IAIVGDVGLTYNTT-----------STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDY 279 (569)
Q Consensus 211 favigD~g~~~~~~-----------~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~ 279 (569)
|++++|+|.+.... ..++.+.+.++|+|+++||+++. +. +..|+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~------~~------------------~~~~~~ 56 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQR------GL------------------PEEFEE 56 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCC------CC------------------HHHHHH
Confidence 57899999875421 12334456789999999999963 22 234566
Q ss_pred HHHhhhhhhcc-CCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHH
Q 008343 280 WGRYMQPVLSK-VPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQY 358 (569)
Q Consensus 280 ~~~~l~~l~~~-~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~ 358 (569)
+.++++.+... .|++.++||||.
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~-------------------------------------------------------- 80 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV-------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE--------------------------------------------------------
Confidence 66777776533 699999999996
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCC
Q 008343 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGP 438 (569)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~ 438 (569)
|+++|+|++......... ...++.+.+++.+++++++++||+|........ ...+++
T Consensus 81 ------------------iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~~~----~~~~~~ 137 (144)
T cd07400 81 ------------------IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGHKHVPYVGNIS----NAGGGL 137 (144)
T ss_pred ------------------EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECCCCCcCeeecc----CCCCCE
Confidence 778888887653321111 114567889999999999999999997655311 124456
Q ss_pred eEEEECC
Q 008343 439 VHITVGD 445 (569)
Q Consensus 439 vyIv~G~ 445 (569)
+++..|+
T Consensus 138 ~~~~aGs 144 (144)
T cd07400 138 VVIGAGT 144 (144)
T ss_pred EEEecCC
Confidence 6666653
No 25
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.48 E-value=5.6e-14 Score=110.07 Aligned_cols=43 Identities=40% Similarity=0.678 Sum_probs=32.2
Q ss_pred CCCCCccceeeCCcceEEEEEecCCceEEEEEEecCCcceeeEEE
Q 008343 496 DRQPDYSAFRESSFGHGILEVKNETHALWTWHRNQDFYEAAGDQI 540 (569)
Q Consensus 496 ~~~p~~s~~~~~~~G~~~l~v~n~t~~~~~~~~~~~~~~~~~D~~ 540 (569)
.++|+|+++|..+|||++|+|.|.|||+|||++++|+ +|+|+|
T Consensus 20 ~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g--~v~D~f 62 (62)
T PF14008_consen 20 YPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDG--SVLDEF 62 (62)
T ss_dssp SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS---T-CEE-
T ss_pred CCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCC--cEecCC
Confidence 4679999999999999999999999999999999876 899997
No 26
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.45 E-value=1.1e-12 Score=129.19 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=102.2
Q ss_pred CeEEEEEcccCCCCCh-----HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008343 208 PSRIAIVGDVGLTYNT-----TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (569)
Q Consensus 208 ~~rfavigD~g~~~~~-----~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (569)
++||++++|+|..... .+.++.+.+.+||+|+++||+++.. . ... +.+.+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~------~------------------~~~-~~~~~ 55 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGS------V------------------DVL-ELLLE 55 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCc------c------------------hhh-HHHHH
Confidence 4799999999987432 3455566677899999999999632 1 000 23445
Q ss_pred hhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHH
Q 008343 283 YMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLE 362 (569)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~ 362 (569)
.++.+....|+++++||||+...... .+....+...+. ...+.+..++.++..+.++.-. ......+++.
T Consensus 56 ~l~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~~ 125 (223)
T cd07385 56 LLKKLKAPLGVYAVLGNHDYYSGDEE-NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVD----DGLGRRPDLE 125 (223)
T ss_pred HHhccCCCCCEEEECCCcccccCchH-HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEecc----CccccCCCHH
Confidence 56666667899999999998643221 101122211111 1123345566666544443211 1122234566
Q ss_pred HHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeecc
Q 008343 363 EDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRV 428 (569)
Q Consensus 363 ~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v 428 (569)
+.+++.+. ....|++.|.|.+.. .+.+.++|++++||+|..|...|.
T Consensus 126 ~~~~~~~~--~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~ 172 (223)
T cd07385 126 KALKGLDE--DDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPG 172 (223)
T ss_pred HHHhCCCC--CCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccc
Confidence 77766443 346899999986421 125679999999999999876553
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.44 E-value=3.4e-13 Score=126.94 Aligned_cols=145 Identities=19% Similarity=0.292 Sum_probs=87.7
Q ss_pred EEEEcccCCCCChHHHH--HHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008343 211 IAIVGDVGLTYNTTSTV--SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (569)
Q Consensus 211 favigD~g~~~~~~~~~--~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (569)
|+++||+|......... +.+.+.++|+++++||+++.. . ...+.. ......
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~------~------------------~~~~~~---~~~~~~ 53 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLT------D------------------APRFAP---LLLALK 53 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCc------c------------------hHHHHH---HHHhhc
Confidence 57899999875433222 223456899999999999521 1 011111 222333
Q ss_pred ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCC-CHHHHHHHHHHHhc
Q 008343 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDK-SGDQYKWLEEDLAN 367 (569)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~-~~~Q~~WL~~~L~~ 367 (569)
...|+++++||||+. +.|+...-+.++.. +.++.+|+.++++
T Consensus 54 ~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~- 96 (166)
T cd07404 54 GFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR- 96 (166)
T ss_pred CCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCC-
Confidence 578999999999985 12222211112211 2345566666554
Q ss_pred cccCCCCEEEEEeCCCccccCccc---cc-chHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 368 VEREVTPWLVATWHAPWYSTYKAH---YR-EAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 368 ~~~~~~~wvIv~~H~P~y~s~~~~---~~-~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
+.+|+++|+|++...... .. .....++.+.+++++++|+++++||+|.....
T Consensus 97 ------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 ------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred ------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 237888899887653221 11 11244566778888999999999999987543
No 28
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.41 E-value=5e-12 Score=133.27 Aligned_cols=93 Identities=18% Similarity=0.268 Sum_probs=66.6
Q ss_pred CceeEEEE-eCcE--EEEEEecccc-----------CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCccc---
Q 008343 329 SKFYYSFN-AGGI--HFLMLAAYVS-----------FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAH--- 391 (569)
Q Consensus 329 ~~~yYsf~-~G~v--~fI~LDt~~~-----------~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~--- 391 (569)
+..||+|+ .|++ |||+||+... .....+|++||+++|+.+.+ +.+++|+++|+|+.+.....
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhh
Confidence 34599999 5855 9999998641 12469999999999998753 35789999999987632211
Q ss_pred cc----------chHHHHHHHHHHHHHc-CCcEEEEccccCc
Q 008343 392 YR----------EAECMRVAMEDLLYKY-GVDVVFNGHVHAY 422 (569)
Q Consensus 392 ~~----------~~~~~r~~l~~ll~~~-~VdlvlsGH~H~y 422 (569)
+. .....-.+|..+|.+| +|.++|+||.|.-
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 11 0001123789999999 6889999999964
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.40 E-value=2.6e-12 Score=126.11 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=104.9
Q ss_pred EEEEEcccCCCCCh----------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccch
Q 008343 210 RIAIVGDVGLTYNT----------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (569)
Q Consensus 210 rfavigD~g~~~~~----------------~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y 273 (569)
||++++|+|.+... ..+++.+.+.++|+||++||++.... ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~----~~------------------ 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNN----PS------------------ 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCC----CC------------------
Confidence 68999999987431 22344455679999999999985321 00
Q ss_pred hHHHHHHHHhhhhhh-ccCCcEEecCCccccccccchhhHHhhhccCCCCC--CCCCCCceeEEEEeCcEEEEEEecccc
Q 008343 274 QPRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK--ESGSLSKFYYSFNAGGIHFLMLAAYVS 350 (569)
Q Consensus 274 ~~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~--~~~~~~~~yYsf~~G~v~fI~LDt~~~ 350 (569)
...+..+.+.++.+. ..+|+++++||||....... .........+... ...........++.+++.|+.++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~ 136 (223)
T cd00840 59 PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR 136 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH
Confidence 123445566666654 47999999999998743211 1111111110000 000011223334455688888875422
Q ss_pred CCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 351 FDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 351 ~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
. ....+.++++..+.+.. .....|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 137 S-RLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 1 12334445455555543 23468999999986543221110 123334556789999999999987653
No 30
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.39 E-value=1.8e-11 Score=120.53 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=101.6
Q ss_pred CeEEEEEcccCCCCChH-HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008343 208 PSRIAIVGDVGLTYNTT-STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (569)
Q Consensus 208 ~~rfavigD~g~~~~~~-~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (569)
+.|+++++|+|.....- +.++.+.+.++|+||++||+++. |. .. .....+.+.+..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~------g~-------------~~----~~~~~~l~~l~~ 60 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPK------AA-------------KS----EDYAAFFRILGE 60 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCC------CC-------------CH----HHHHHHHHHHHh
Confidence 67999999999753322 33444445689999999999962 21 00 122233333333
Q ss_pred hhccCCcEEecCCccccccccchhhH-HhhhccCCCCCCCCCCCceeEEEEe-CcEEEEEEeccccC--CCCHHHH----
Q 008343 287 VLSKVPIMVVEGNHEYEEQAENRTFV-AYTSRFAFPSKESGSLSKFYYSFNA-GGIHFLMLAAYVSF--DKSGDQY---- 358 (569)
Q Consensus 287 l~~~~P~~~v~GNHD~~~~~~~~~~~-~y~~~f~~P~~~~~~~~~~yYsf~~-G~v~fI~LDt~~~~--~~~~~Q~---- 358 (569)
+ ..|+++++||||... ...+. .|...-..|..- .....+ ..+ |+++|+.|+....+ ...++|.
T Consensus 61 l--~~pv~~V~GNhD~~v---~~~l~~~~~~~~~~p~~~--~lh~~~--~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~ 131 (224)
T cd07388 61 A--HLPTFYVPGPQDAPL---WEYLREAYNAELVHPEIR--NVHETF--AFWRGPYLVAGVGGEIADEGEPEEHEALRYP 131 (224)
T ss_pred c--CCceEEEcCCCChHH---HHHHHHHhcccccCccce--ecCCCe--EEecCCeEEEEecCCcCCCCCcCHHHHhhhh
Confidence 3 589999999999630 01111 111111112210 011122 334 56999999965433 2345552
Q ss_pred HHHHH----HHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEcccc
Q 008343 359 KWLEE----DLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVH 420 (569)
Q Consensus 359 ~WL~~----~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H 420 (569)
.||.+ .+.+. ..+..|+++|+|+|.....| . -...+.+++++++..+++|||+|
T Consensus 132 ~~~~~~~l~~~~~~---~~~~~VLv~H~PP~g~g~~h-~----GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 132 AWVAEYRLKALWEL---KDYRKVFLFHTPPYHKGLNE-Q----GSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhHHHHHHHHHHhC---CCCCeEEEECCCCCCCCCCc-c----CHHHHHHHHHHhCCCEEEEcCCc
Confidence 56433 33332 23358999999999874322 1 23567789999999999999999
No 31
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.38 E-value=8.5e-12 Score=123.51 Aligned_cols=178 Identities=20% Similarity=0.200 Sum_probs=116.8
Q ss_pred EEEEEcccCCCCChHHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCc--cccccCCCCCCccchhHHHHHHH--
Q 008343 210 RIAIVGDVGLTYNTTSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSD--CYACSFANSPIHETYQPRWDYWG-- 281 (569)
Q Consensus 210 rfavigD~g~~~~~~~~~~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~--~~~~~~~~~~~~e~Y~~~wd~~~-- 281 (569)
||++.+|.+...........+. +.+||++|++||.+|++.......... --..........+.|+.++..+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5889999887766655555654 679999999999999974211000000 00000001233456666666654
Q ss_pred HhhhhhhccCCcEEecCCccccccccc----------------hhhHHhhhccCCCCCCCC--CCCceeEEEEeCcE-EE
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYEEQAEN----------------RTFVAYTSRFAFPSKESG--SLSKFYYSFNAGGI-HF 342 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~----------------~~~~~y~~~f~~P~~~~~--~~~~~yYsf~~G~v-~f 342 (569)
..++.+.+++|++.++++||+.++.+. ...++|.+..+.+..... .....|++|.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 346777889999999999999866432 233466666655554332 34678999999996 99
Q ss_pred EEEeccccCCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcC--CcEEEEcccc
Q 008343 343 LMLAAYVSFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVH 420 (569)
Q Consensus 343 I~LDt~~~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H 420 (569)
|+||++... ..|......|+++..++.+.+ -.++|||++|
T Consensus 161 ~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999998654 233444566788888766654 3388999999
Q ss_pred Cccee
Q 008343 421 AYERS 425 (569)
Q Consensus 421 ~yeR~ 425 (569)
..+..
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 76654
No 32
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.37 E-value=1.4e-11 Score=125.32 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=97.1
Q ss_pred CeEEEEEcccCCCCC-----hHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008343 208 PSRIAIVGDVGLTYN-----TTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (569)
Q Consensus 208 ~~rfavigD~g~~~~-----~~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (569)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.+ . ...++.+.+
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~------~------------------~~~~~~~~~ 104 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFD------M------------------PLNFSAFSD 104 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCC------c------------------cccHHHHHH
Confidence 699999999998632 12345556677999999999998521 1 012344556
Q ss_pred hhhhhhccCCcEEecCCcccccccc-chhhHHhhhccCCCCCCCCCCCceeEEEEeCc--EEEEEEeccccCCCCHHHHH
Q 008343 283 YMQPVLSKVPIMVVEGNHEYEEQAE-NRTFVAYTSRFAFPSKESGSLSKFYYSFNAGG--IHFLMLAAYVSFDKSGDQYK 359 (569)
Q Consensus 283 ~l~~l~~~~P~~~v~GNHD~~~~~~-~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~--v~fI~LDt~~~~~~~~~Q~~ 359 (569)
.++.+.+..|+++|+||||+..... .+.+....+...+. -..+....+..++ +.++.+|........
T Consensus 105 ~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi~-----lL~n~~~~i~~~~~~i~i~G~~d~~~~~~~----- 174 (271)
T PRK11340 105 VLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGIT-----VLFNQATVIATPNRQFELVGTGDLWAGQCK----- 174 (271)
T ss_pred HHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCcE-----EeeCCeEEEeeCCcEEEEEEecchhccCCC-----
Confidence 6777766789999999999853211 11122222221110 1123444555543 666777542111111
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeecc
Q 008343 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRV 428 (569)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v 428 (569)
..+.+++ .. ..|++.|.|-+- +.+.+.++|++||||+|.-|-..|.
T Consensus 175 -~~~~~~~----~~-~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 175 -PPPASEA----NL-PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred -hhHhcCC----CC-CeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 1112222 22 478899999642 1235678999999999998876553
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.35 E-value=1.2e-10 Score=117.30 Aligned_cols=210 Identities=20% Similarity=0.337 Sum_probs=117.6
Q ss_pred CeEEEEEcccCCCCC--------------------hHHHHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCC
Q 008343 208 PSRIAIVGDVGLTYN--------------------TTSTVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFAN 266 (569)
Q Consensus 208 ~~rfavigD~g~~~~--------------------~~~~~~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~ 266 (569)
+|||+.++|+|.+.. ....+++++ .++||||+++||++++...
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t---------------- 116 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST---------------- 116 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc----------------
Confidence 799999999998743 223455554 5799999999999975210
Q ss_pred CCCccchhHHHHHHHHhhhhhh-ccCCcEEecCCccccccccchhhHHhhhccC--CCCCCCCCCCceeEEEEeCc----
Q 008343 267 SPIHETYQPRWDYWGRYMQPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFA--FPSKESGSLSKFYYSFNAGG---- 339 (569)
Q Consensus 267 ~~~~e~Y~~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~--~P~~~~~~~~~~yYsf~~G~---- 339 (569)
.+++ ..+...+.|.. .++||.+++||||-...........+....+ +++..+ ..+..+.-..+|+
T Consensus 117 ----~Da~---~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~~~v~p-~dg~~~~~~g~gnyn~~ 188 (379)
T KOG1432|consen 117 ----QDAA---TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSLSQVNP-PDGHMYIIDGFGNYNLQ 188 (379)
T ss_pred ----HhHH---HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCccccCCC-cccceeeeecccceEEE
Confidence 1122 23445556543 7999999999999875543333333433221 111110 0111111111121
Q ss_pred --------------EEEEEEeccccC----------CCCHHHHHHHHHHHhcc---ccCCCC-EEEEEeCCCcc--ccCc
Q 008343 340 --------------IHFLMLAAYVSF----------DKSGDQYKWLEEDLANV---EREVTP-WLVATWHAPWY--STYK 389 (569)
Q Consensus 340 --------------v~fI~LDt~~~~----------~~~~~Q~~WL~~~L~~~---~~~~~~-wvIv~~H~P~y--~s~~ 389 (569)
..++.||+..+- .....|.+||+..-.+- +.+-.| --++++|.|+- ..-.
T Consensus 189 i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~ 268 (379)
T KOG1432|consen 189 IEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELE 268 (379)
T ss_pred eccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhcc
Confidence 234566654221 13578999999887331 111122 35778899862 2111
Q ss_pred c------cccch---HHHHHHHHHHHH-HcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 390 A------HYREA---ECMRVAMEDLLY-KYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 390 ~------~~~~~---~~~r~~l~~ll~-~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
. .+++. ......+...|. ..+|+.|++||+|...-..+. .+.+++.=|+|+.
T Consensus 269 ~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaG 330 (379)
T KOG1432|consen 269 SKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAG 330 (379)
T ss_pred CCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCc
Confidence 1 11111 112234555666 778999999999997766542 2446666555544
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.27 E-value=4.1e-11 Score=106.01 Aligned_cols=116 Identities=29% Similarity=0.500 Sum_probs=81.7
Q ss_pred EEEcccCCCCChHHHH---HHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008343 212 AIVGDVGLTYNTTSTV---SHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (569)
Q Consensus 212 avigD~g~~~~~~~~~---~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (569)
+++||+|......... ....+.++|+|+++||+++.. .. ..+..+........
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~------~~------------------~~~~~~~~~~~~~~ 56 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDG------PD------------------PEEVLAAALALLLL 56 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCC------CC------------------chHHHHHHHHHhhc
Confidence 3689999886544333 344457899999999999732 10 11222222233334
Q ss_pred ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHHHhcc
Q 008343 289 SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANV 368 (569)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~ 368 (569)
...|+++++||||
T Consensus 57 ~~~~~~~~~GNHD------------------------------------------------------------------- 69 (131)
T cd00838 57 LGIPVYVVPGNHD------------------------------------------------------------------- 69 (131)
T ss_pred CCCCEEEeCCCce-------------------------------------------------------------------
Confidence 6899999999999
Q ss_pred ccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 369 EREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 369 ~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
|++.|.|++.............+..+..++.+.+++++|+||.|.+++..
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 88899998776443222222257888899999999999999999999874
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.11 E-value=3.5e-09 Score=104.75 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=101.5
Q ss_pred eEEEEEcccCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh
Q 008343 209 SRIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL 288 (569)
Q Consensus 209 ~rfavigD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~ 288 (569)
+||+++||+|..... ...+.+.+.+||+|+++||++.. . . .+.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~-------~-------------------~---~~~~~l~~l- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNE-------S-------------------V---QLVRAISSL- 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcC-------h-------------------H---HHHHHHHhC-
Confidence 589999999976433 23445566789999999999832 0 0 122333333
Q ss_pred ccCCcEEecCCccccccccc-hhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecccc----------------C
Q 008343 289 SKVPIMVVEGNHEYEEQAEN-RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVS----------------F 351 (569)
Q Consensus 289 ~~~P~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~----------------~ 351 (569)
..|++++.||||....... .....+.+....-.+ .--.|-..++....+.++.++.. |
T Consensus 50 -~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg~----~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~f 124 (238)
T cd07397 50 -PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLGD----LHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVY 124 (238)
T ss_pred -CCCeEEEcCCCcccccccccchHHHHHHHHHHhCC----cEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHh
Confidence 5789999999998643211 012223322211110 00001111222223333333210 1
Q ss_pred --CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCccc-------------ccchHHHHHHHHHHHHHcCCcEEEE
Q 008343 352 --DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAH-------------YREAECMRVAMEDLLYKYGVDVVFN 416 (569)
Q Consensus 352 --~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~-------------~~~~~~~r~~l~~ll~~~~Vdlvls 416 (569)
..-.+-.+.+-+.++..+... + .|++.|.++....... ......+++++..+-..-.++++++
T Consensus 125 gi~s~~eA~~~ive~~~~~~~~~-~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~f 202 (238)
T cd07397 125 GVISLEESAQRIIAAAKKAPPDL-P-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVF 202 (238)
T ss_pred CCCCHHHHHHHHHHHhhhcCCCC-C-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEe
Confidence 011233344444443333222 2 6888899987653111 1123456677765553445899999
Q ss_pred ccccCcceeecccc--CccCCCCCeEEE
Q 008343 417 GHVHAYERSNRVYN--YTLDPCGPVHIT 442 (569)
Q Consensus 417 GH~H~yeR~~~v~n--~~~~~~g~vyIv 442 (569)
||.|.--|...-.. ...+..|++|+.
T Consensus 203 GH~H~~l~~~~~~r~~~~~~~~gt~y~N 230 (238)
T cd07397 203 GHMHHRLRRGKGLRNMIAVDREGTVYLN 230 (238)
T ss_pred CCccCcccccccccceeeecCCCeEEEe
Confidence 99997533321100 113567888885
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.09 E-value=8.3e-10 Score=100.31 Aligned_cols=116 Identities=17% Similarity=0.225 Sum_probs=73.7
Q ss_pred EEEEEcccCCCCChHHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhc
Q 008343 210 RIAIVGDVGLTYNTTSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (569)
Q Consensus 210 rfavigD~g~~~~~~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (569)
||+++||+|.... .+...++|+++++||++.. +. ...++.+.+.++.+
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~------~~------------------~~~~~~~~~~l~~~-- 48 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTER------GT------------------LEELQKFLDWLKSL-- 48 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCC------CC------------------HHHHHHHHHHHHhC--
Confidence 5899999997644 2234589999999999852 11 12233444455544
Q ss_pred cCC-cEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHHHhcc
Q 008343 290 KVP-IMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLANV 368 (569)
Q Consensus 290 ~~P-~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~~ 368 (569)
..| +++++||||....
T Consensus 49 ~~~~~~~v~GNHD~~~~--------------------------------------------------------------- 65 (135)
T cd07379 49 PHPHKIVIAGNHDLTLD--------------------------------------------------------------- 65 (135)
T ss_pred CCCeEEEEECCCCCcCC---------------------------------------------------------------
Confidence 233 5789999996310
Q ss_pred ccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcc
Q 008343 369 EREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (569)
Q Consensus 369 ~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (569)
.. .+.|++.|.|++............-.+.+.+++.+++++++|+||+|...
T Consensus 66 -~~--~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 66 -PE--DTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred -CC--CCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 01 23678889998765322111011112456677788999999999999864
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.06 E-value=1.4e-09 Score=100.55 Aligned_cols=138 Identities=20% Similarity=0.346 Sum_probs=81.2
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (569)
+||+++||+|..... .+.++.+ +++|+|+++||++.. ..+.+.++.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------------------------~~~~~~~~~~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------------------------EEVLELLRDI 48 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------------------------HHHHHHHhcC
Confidence 699999999986432 3455555 579999999999831 1233333333
Q ss_pred hccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHHHhc
Q 008343 288 LSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEEDLAN 367 (569)
Q Consensus 288 ~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~L~~ 367 (569)
|++++.||||... +....... . .+..
T Consensus 49 ----~~~~v~GNHD~~~---------~~~~~~~~---------~--------------------------------~~~~ 74 (156)
T PF12850_consen 49 ----PVYVVRGNHDNWA---------FPNENDEE---------Y--------------------------------LLDA 74 (156)
T ss_dssp ----EEEEE--CCHSTH---------HHSEECTC---------S--------------------------------SHSE
T ss_pred ----CEEEEeCCccccc---------chhhhhcc---------c--------------------------------cccc
Confidence 8999999999531 11111000 0 0000
Q ss_pred cccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCC
Q 008343 368 VEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGG 447 (569)
Q Consensus 368 ~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG 447 (569)
.......+.|++.|...+.... ..+.+..++...+++++++||.|..+... .+++.++..|+-+
T Consensus 75 ~~~~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~ 138 (156)
T PF12850_consen 75 LRLTIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIG 138 (156)
T ss_dssp EEEEETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSS
T ss_pred eeeeecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCC
Confidence 0001123578888877665321 12345577789999999999999977763 4578888888766
Q ss_pred c
Q 008343 448 N 448 (569)
Q Consensus 448 ~ 448 (569)
.
T Consensus 139 ~ 139 (156)
T PF12850_consen 139 G 139 (156)
T ss_dssp S
T ss_pred C
Confidence 5
No 38
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.99 E-value=4.4e-09 Score=105.24 Aligned_cols=198 Identities=17% Similarity=0.208 Sum_probs=104.4
Q ss_pred eEEEEEcccCCCCChHH----HHHHHH--hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHH
Q 008343 209 SRIAIVGDVGLTYNTTS----TVSHMI--SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGR 282 (569)
Q Consensus 209 ~rfavigD~g~~~~~~~----~~~~l~--~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~ 282 (569)
+|+++++|+|.+..... .++.+. +.++|+|+++||+++. + .|.. .. ........+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~--~g~~-----------~~----~~~~~~~~~ 61 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--W--IGDD-----------DP----SPFAREIAA 61 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--c--cccC-----------cC----CHHHHHHHH
Confidence 58999999998754322 233332 3589999999999952 1 1110 00 011223445
Q ss_pred hhhhhhc-cCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHH
Q 008343 283 YMQPVLS-KVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWL 361 (569)
Q Consensus 283 ~l~~l~~-~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL 361 (569)
.++.+.. .+|+++++||||.... ..+.+...+.. -.....+++++.++++.-.... ...+..++++
T Consensus 62 ~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~~------l~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~ 128 (241)
T PRK05340 62 ALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMTL------LPDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRF 128 (241)
T ss_pred HHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCEE------eCCcEEEEECCEEEEEECCccc-ccCCHHHHHH
Confidence 5555553 4899999999997421 12222221100 0112346777777776644321 1234555555
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCcc-------------cccc---hHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 362 EEDLANVEREVTPWLVATWHAPWYSTYKA-------------HYRE---AECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s~~~-------------~~~~---~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
++.+.+. |.+..+|.+++..... ..+. .....+.+.+++.+++++++++||+|.-...
T Consensus 129 r~~~r~~------~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 129 RRKVRNP------WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HHHHhCH------HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCccee
Confidence 5555441 1222223332211000 0000 0011245778889999999999999986543
Q ss_pred eccccCccCCCCCeEEEECCCCc
Q 008343 426 NRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 426 ~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
. +.+ +..+..|++.|+...
T Consensus 203 ~-~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 203 Q-LQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred e-ccC---CCcceEEEEeCCCCC
Confidence 2 110 111246899998844
No 39
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.97 E-value=5.8e-09 Score=106.38 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=56.9
Q ss_pred CeEEEEEcccCCCCCh---HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008343 208 PSRIAIVGDVGLTYNT---TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (569)
Q Consensus 208 ~~rfavigD~g~~~~~---~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (569)
+++|+.++|+|..... .+.+..+....||+|+++||+++.+ . .+.+..+.+.+
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~------~------------------~~~~~~~~~~L 99 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGD------R------------------PPGVAALALFL 99 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCC------C------------------CCCHHHHHHHH
Confidence 6899999999987554 2344555667889999999999631 0 02345667788
Q ss_pred hhhhccCCcEEecCCccccccc
Q 008343 285 QPVLSKVPIMVVEGNHEYEEQA 306 (569)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~ 306 (569)
+++.+..++++++||||+....
T Consensus 100 ~~L~~~~gv~av~GNHd~~~~~ 121 (284)
T COG1408 100 AKLKAPLGVFAVLGNHDYGVDR 121 (284)
T ss_pred HhhhccCCEEEEeccccccccc
Confidence 8888899999999999998543
No 40
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.89 E-value=1.1e-08 Score=98.05 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.6
Q ss_pred EEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
|+++|.|...... ..+..++.+++++++|+||.|.+...
T Consensus 112 i~lsH~P~~~~~~----------~~~~~~~~~~~p~~Ifs~H~H~s~~~ 150 (195)
T cd08166 112 IMLSHVPLLAEGG----------QALKHVVTDLDPDLIFSAHRHKSSIF 150 (195)
T ss_pred eeeeccccccccc----------HHHHHHHHhcCceEEEEcCccceeeE
Confidence 8889999876432 25667889999999999999997765
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.89 E-value=1.1e-08 Score=94.83 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=37.5
Q ss_pred EEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 375 WLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 375 wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
+.|++.|.+....... .+. ..++.+.++|++++||+|...... .+++.+|..|+.|.
T Consensus 76 ~~i~v~Hg~~~~~~~~-------~~~--~~~~~~~~~d~vi~GHtH~~~~~~--------~~~~~~inpGs~~~ 132 (155)
T cd00841 76 KRIFLTHGHLYGVKNG-------LDR--LYLAKEGGADVVLYGHTHIPVIEK--------IGGVLLLNPGSLSL 132 (155)
T ss_pred EEEEEECCcccccccc-------hhh--hhhhhhcCCCEEEECcccCCccEE--------ECCEEEEeCCCccC
Confidence 3677888776543211 011 455677899999999999865432 34777787777665
No 42
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.81 E-value=1.3e-07 Score=87.40 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=44.6
Q ss_pred CCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECC
Q 008343 372 VTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGD 445 (569)
Q Consensus 372 ~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~ 445 (569)
...-+|||.|.|+++..... ..+.+++++++|+.++.||.|.-.|-.+-+. +-.|+.|+.+-+
T Consensus 157 ~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~~~~s---~v~Gi~y~Lvaa 219 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPNIGFS---NVRGIEYMLVAA 219 (230)
T ss_pred CcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCCCCcc---cccCceEEEEec
Confidence 34458999999999864332 2456788899999999999999887544222 234777766543
No 43
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.80 E-value=5.6e-08 Score=90.73 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.5
Q ss_pred eEEEEEcccCCCCChHHH-HHHHHhC-CCCEEEEcCCcc
Q 008343 209 SRIAIVGDVGLTYNTTST-VSHMISN-RPDLILLVGDVT 245 (569)
Q Consensus 209 ~rfavigD~g~~~~~~~~-~~~l~~~-~pDfvl~~GDl~ 245 (569)
+|++++||+|......+. .+.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 589999999976543333 3344455 799999999997
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.79 E-value=3.3e-08 Score=92.33 Aligned_cols=52 Identities=23% Similarity=0.510 Sum_probs=32.9
Q ss_pred HhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhh---ccCCcEEecCCcccc
Q 008343 231 ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVL---SKVPIMVVEGNHEYE 303 (569)
Q Consensus 231 ~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~---~~~P~~~v~GNHD~~ 303 (569)
.+.+||+|+++||++... .. .. ...|..+...+..+. ...|++.++||||..
T Consensus 35 ~~~~pd~vv~~GDl~~~~------~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 35 WLLQPDVVFVLGDLFDEG------KW--------------ST-DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HhcCCCEEEECCCCCCCC------cc--------------CC-HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 346899999999999531 10 00 134544333333322 258999999999985
No 45
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.78 E-value=5.8e-07 Score=85.78 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 401 AMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 401 ~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
.+..++.+.++|++++||+|...... .+|..+|..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCC
Confidence 34455677889999999999755432 24777787788764
No 46
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.76 E-value=1e-07 Score=103.31 Aligned_cols=179 Identities=19% Similarity=0.284 Sum_probs=103.2
Q ss_pred HHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCccc
Q 008343 225 STVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEY 302 (569)
Q Consensus 225 ~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~ 302 (569)
.++++|.++ ++|||+++||++-.+.|. ...+.--.......+.|......+|++++.||||.
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~----------------~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWA----------------QTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEI 262 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchh----------------hhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCC
Confidence 356666654 489999999999655321 00111011222233456666789999999999999
Q ss_pred ccccc-------ch-----hhHHhhhcc--CCCCCCC-CCCCceeEE-EEeCcEEEEEEeccccC----------CCCHH
Q 008343 303 EEQAE-------NR-----TFVAYTSRF--AFPSKES-GSLSKFYYS-FNAGGIHFLMLAAYVSF----------DKSGD 356 (569)
Q Consensus 303 ~~~~~-------~~-----~~~~y~~~f--~~P~~~~-~~~~~~yYs-f~~G~v~fI~LDt~~~~----------~~~~~ 356 (569)
..... .. -+..+...+ -+|.+.. ....+.||. .-++|.++|+||+..-+ .....
T Consensus 263 ~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~ 342 (577)
T KOG3770|consen 263 HPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPID 342 (577)
T ss_pred CcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchH
Confidence 74311 01 011111111 1333211 123344554 44689999999985322 23578
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcC--CcEEEEccccCccee
Q 008343 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYG--VDVVFNGHVHAYERS 425 (569)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~--VdlvlsGH~H~yeR~ 425 (569)
|++||..+|.++..++.. |=+++|.|.-... .. +.-...+-.++.++. |...|.||.|.-+-.
T Consensus 343 ~lqWf~~~L~~ae~~Gek-Vhil~HIPpG~~~---c~--~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 343 QLQWFVDQLQEAESAGEK-VHILGHIPPGDGV---CL--EGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred HhhHHHHHHHHHHhcCCE-EEEEEeeCCCCcc---hh--hhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 899999999997655433 6677899974321 10 111223444555553 456799999976543
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.73 E-value=1.1e-07 Score=90.14 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=26.0
Q ss_pred EEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
|++.|.|.+. ++.+.+++++|+||+|.+-+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH~H~~~~~~ 150 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGHDHDQCEVV 150 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCcccCCeEEE
Confidence 8889999632 5677899999999999986654
No 48
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.72 E-value=4.2e-07 Score=90.41 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=95.7
Q ss_pred EEEcccCCCCCh----HHHHHHHHh--CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhh
Q 008343 212 AIVGDVGLTYNT----TSTVSHMIS--NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (569)
Q Consensus 212 avigD~g~~~~~----~~~~~~l~~--~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (569)
++++|+|.+... ...++.+.+ .+||+|+++||+++. +. |.. . . ......+.+.++
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~--~~--~~~-----------~-~---~~~~~~~~~~l~ 62 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEA--WI--GDD-----------D-P---STLARSVAQAIR 62 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceecc--cc--CCC-----------C-C---CHHHHHHHHHHH
Confidence 689999987542 234444543 379999999999952 11 110 0 0 011233445555
Q ss_pred hhhc-cCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccC--CC---------
Q 008343 286 PVLS-KVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF--DK--------- 353 (569)
Q Consensus 286 ~l~~-~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~--~~--------- 353 (569)
.+.. ..|+++++||||.... . .+.+...+.. . .....+.+++-+++++-..... +.
T Consensus 63 ~L~~~~~~v~~v~GNHD~~~~---~---~~~~~~gi~~-----l-~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~ 130 (231)
T TIGR01854 63 QVSDQGVPCYFMHGNRDFLIG---K---RFAREAGMTL-----L-PDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKV 130 (231)
T ss_pred HHHHCCCeEEEEcCCCchhhh---H---HHHHHCCCEE-----E-CCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHH
Confidence 5553 5899999999998521 1 1222111110 0 0112355566555555322110 00
Q ss_pred ------------CHHHHHHHHHHHhccccCCC--CEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccc
Q 008343 354 ------------SGDQYKWLEEDLANVEREVT--PWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHV 419 (569)
Q Consensus 354 ------------~~~Q~~WL~~~L~~~~~~~~--~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~ 419 (569)
......||.+.+.+..+++. +=..++.+ ..+.+++++.+++++++++||+
T Consensus 131 r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~i~GHt 194 (231)
T TIGR01854 131 HQPWLQRLFLHLPLAVRVKLARKIRAESRADKQMKSQDIMDV----------------NPAEVAAVMRRYGVDRLIHGHT 194 (231)
T ss_pred hCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcchhhCC----------------CHHHHHHHHHHcCCCEEEECCc
Confidence 01123444444433211110 00011111 1244677888899999999999
Q ss_pred cCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 420 HAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 420 H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
|.-+.. +..+ +..+..|++.|+...
T Consensus 195 H~~~~~-~~~~---~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 195 HRPAIH-PLQA---DGQPATRIVLGDWYR 219 (231)
T ss_pred cCccee-eccc---CCCccEEEEECCCcc
Confidence 987644 2211 223568999999843
No 49
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.72 E-value=1.9e-07 Score=89.94 Aligned_cols=194 Identities=21% Similarity=0.302 Sum_probs=89.8
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCcccc-----ccCCCCC-Ccc--chhH-HH
Q 008343 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYA-----CSFANSP-IHE--TYQP-RW 277 (569)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~-----~~~~~~~-~~e--~Y~~-~w 277 (569)
+-+++.++|.+..... .+.++.+...++|.|+++||+.-.. ...+.|. ...|+.+ +.+ .|+. ..
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~------a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAE------ARSDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TC------HHHHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccc------hhhhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 4589999998765332 2344445566999999999998431 1111110 1111100 000 1110 12
Q ss_pred HHHHHhhhhhhccCCcEEecCCccccccccchhh-HHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccC-CC--
Q 008343 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTF-VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSF-DK-- 353 (569)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~-~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~-~~-- 353 (569)
+.+.+.+..+ .+|.+++|||||.... .-+ .+|....-.|.-- .-..-+.+.-|..-++.+..+... ..
T Consensus 79 ~~ff~~L~~~--~~p~~~vPG~~Dap~~---~~lr~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~~ 150 (255)
T PF14582_consen 79 DKFFRILGEL--GVPVFVVPGNMDAPER---FFLREAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQREE 150 (255)
T ss_dssp HHHHHHHHCC---SEEEEE--TTS-SHH---HHHHHHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-BC
T ss_pred HHHHHHHHhc--CCcEEEecCCCCchHH---HHHHHHhccceecccee---eeeeeecccCCcEEEEecCccccCCCccc
Confidence 2444555544 8999999999998521 111 2233222222100 001112334455888888765321 11
Q ss_pred ------CHHHHHHHHHHHhccccCCCCEEEEEeCCCc-cccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcc
Q 008343 354 ------SGDQYKWLEEDLANVEREVTPWLVATWHAPW-YSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYE 423 (569)
Q Consensus 354 ------~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~-y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ye 423 (569)
.....+|..+.|..++ ..-+|+++|.|+ +.....+.+ .+.+.+++++|+.++||+||.|.-.
T Consensus 151 ~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~G-----S~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 151 EFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVG-----SAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTS-----BHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred cccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCccccc-----HHHHHHHHHhcCCcEEEecccccch
Confidence 1234455566666653 223788899998 444322322 2567789999999999999999744
No 50
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.70 E-value=5.6e-08 Score=87.78 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=32.0
Q ss_pred EEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 376 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
.|+++|+|++....... ....-.+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 47778888764332110 00112456778888999999999999975543
No 51
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.70 E-value=1e-06 Score=85.20 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=104.9
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008343 208 PSRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (569)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (569)
.+|+++++|+|..... .+.++.+...++|+++.+||++|.+ .|.. ...-+.. + ++.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~----~~~~-------------~~~~~~~---~---~e~ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFH----FGPK-------------EVAEELN---K---LEA 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhh----cCch-------------HHHHhhh---H---HHH
Confidence 6899999999987543 3344444556899999999999542 2221 0000100 1 333
Q ss_pred hh-ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEecc------ccCCCCHHH-H
Q 008343 287 VL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAY------VSFDKSGDQ-Y 358 (569)
Q Consensus 287 l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~------~~~~~~~~Q-~ 358 (569)
+. ..+|+++++||-|-.. -.... ....... -+ -..+++++.|+.+... +.+...+++ +
T Consensus 60 l~~~~~~v~avpGNcD~~~-----v~~~l-~~~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 60 LKELGIPVLAVPGNCDPPE-----VIDVL-KNAGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred HHhcCCeEEEEcCCCChHH-----HHHHH-Hhccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 33 5899999999987631 11111 1111111 01 4577888888885431 112223333 3
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCcccccc-hHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE-AECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~-~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
.-|++-+.+.+.. -.|+.+|.|+|.+......+ ...-...+.+++++.+..+.++||+|.+.-.
T Consensus 126 s~l~~~v~~~~~~---~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~ 190 (226)
T COG2129 126 SKLKSLVKKADNP---VNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGI 190 (226)
T ss_pred HHHHHHHhcccCc---ceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccc
Confidence 4444555554311 13999999999875442222 1223467888999999999999999985444
No 52
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.65 E-value=3.3e-07 Score=92.10 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=91.8
Q ss_pred eEEEEEcccCCCC-------Ch---HHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008343 209 SRIAIVGDVGLTY-------NT---TSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (569)
Q Consensus 209 ~rfavigD~g~~~-------~~---~~~~~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (569)
++|++++|+|... +. ...++++.+..+| +++..||++....... .. ..
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~-----------------~~----~~ 59 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST-----------------AT----KG 59 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh-----------------cc----CC
Confidence 4899999999553 11 2455666666788 7899999985321100 00 00
Q ss_pred HHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCC---C----C---CCCCCceeEEEEeCcEEE--EEE
Q 008343 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS---K----E---SGSLSKFYYSFNAGGIHF--LML 345 (569)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~---~~~~~~~yYsf~~G~v~f--I~L 345 (569)
....+.+..+ -.-++++||||+... .+.+.........|- + . .......|.-++.+++++ +.+
T Consensus 60 ~~~~~~l~~~---g~d~~~~GNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~ 134 (252)
T cd00845 60 EANIELMNAL---GYDAVTIGNHEFDYG--LDALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGL 134 (252)
T ss_pred cHHHHHHHhc---CCCEEeecccccccc--HHHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEe
Confidence 1122333332 345678899998632 223444433333221 0 0 001123455677887554 444
Q ss_pred eccccCC----------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEE
Q 008343 346 AAYVSFD----------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (569)
Q Consensus 346 Dt~~~~~----------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (569)
.+..... ......+.+++..+. .+.+...+|++.|-+.... . .+.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~~------------~---~la~~~~giDlv 198 (252)
T cd00845 135 TTPDTPTYTPLGWIIGLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDDD------------E---ELAEEVPGIDVI 198 (252)
T ss_pred ccccceeecCCCcccCceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccch------------H---HHHhcCCCccEE
Confidence 3321100 001223334332222 2245678999999886431 1 12222 589999
Q ss_pred EEccccCccee
Q 008343 415 FNGHVHAYERS 425 (569)
Q Consensus 415 lsGH~H~yeR~ 425 (569)
|+||.|..+..
T Consensus 199 lggH~H~~~~~ 209 (252)
T cd00845 199 LGGHTHHLLEE 209 (252)
T ss_pred EcCCcCcccCC
Confidence 99999987653
No 53
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.56 E-value=2e-07 Score=89.42 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.9
Q ss_pred EEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
|++.|.|.+. +..+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8889999765 2234579999999999977763
No 54
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.56 E-value=4.3e-07 Score=88.95 Aligned_cols=194 Identities=19% Similarity=0.259 Sum_probs=97.9
Q ss_pred EEEcccCCCCChH---HHHHHHHh----CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008343 212 AIVGDVGLTYNTT---STVSHMIS----NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (569)
Q Consensus 212 avigD~g~~~~~~---~~~~~l~~----~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (569)
++++|+|.+.... .....+.. .++|.++++||++.. +. +... .....+ ...+...+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~--~~--~~~~----------~~~~~~---~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDL--WF--GDDE----------VVPPAA---HEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEE--Ee--cCCC----------CCChHH---HHHHHHHH
Confidence 4789999875432 22333322 489999999999953 11 1100 000111 11123344
Q ss_pred hhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHH
Q 008343 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEED 364 (569)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~ 364 (569)
+......+++.++||||.... .+ +........ .......+.+++.+++++-... ++.....+.|+...
T Consensus 64 ~~~~~~~~v~~v~GNHD~~~~----~~--~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~ 131 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFLLG----DF--FAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRL 131 (217)
T ss_pred HHHHCCCeEEEECCCchHHHH----hH--HHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHH
Confidence 445568999999999998521 11 111111100 0111215677888888776532 22334445555544
Q ss_pred HhccccCCCCEEEEEeCCC---------ccc------cCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccc
Q 008343 365 LANVEREVTPWLVATWHAP---------WYS------TYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVY 429 (569)
Q Consensus 365 L~~~~~~~~~wvIv~~H~P---------~y~------s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~ 429 (569)
+...... +.++..+.. ... .............+.+..++.+++++++++||+|......
T Consensus 132 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~--- 205 (217)
T cd07398 132 GRNPYDQ---LLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE--- 205 (217)
T ss_pred hCcHHHH---HHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE---
Confidence 3221000 000000000 000 0000011123345666777888999999999999876553
Q ss_pred cCccCCCCCeEEEECC
Q 008343 430 NYTLDPCGPVHITVGD 445 (569)
Q Consensus 430 n~~~~~~g~vyIv~G~ 445 (569)
.++..|+.+|+
T Consensus 206 -----~~~~~~~n~G~ 216 (217)
T cd07398 206 -----LDGKLYINLGD 216 (217)
T ss_pred -----ECCEEEEECCC
Confidence 23678888876
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.55 E-value=2.5e-06 Score=87.17 Aligned_cols=189 Identities=16% Similarity=0.154 Sum_probs=93.9
Q ss_pred eEEEEEcccCCCCC-----------------hHHHHHHHHhCCCCEEEE-cCCcccccccccCCCCCccccccCCCCCCc
Q 008343 209 SRIAIVGDVGLTYN-----------------TTSTVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (569)
Q Consensus 209 ~rfavigD~g~~~~-----------------~~~~~~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (569)
++|++++|+|.... ....++++.+.+++.+++ +||++...... .+....
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~-------~~~~~~------ 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLA-------DYYAKI------ 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHH-------HHhhhc------
Confidence 47888888885421 123455555567887765 99998532100 000000
Q ss_pred cchhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCC-------C-CCCCCceeEEEEeC-cEE
Q 008343 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------E-SGSLSKFYYSFNAG-GIH 341 (569)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~-~~~~~~~yYsf~~G-~v~ 341 (569)
+ ........+.|+.+ .. -+.++||||+.. +...+........+|-- . .......|.-++.+ +++
T Consensus 68 ~--~~~~~~~~~~ln~~--g~-d~~~lGNHe~d~--g~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 68 E--DGDPHPMIAAMNAL--GY-DAGTLGNHEFNY--GLDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred c--cCCCChHHHHHHhc--CC-CEEeecccCccc--CHHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 0 00001123334443 33 366789999863 22334444444433310 0 01112446667888 866
Q ss_pred EEEEe--cccc--C-----------CCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHH
Q 008343 342 FLMLA--AYVS--F-----------DKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (569)
Q Consensus 342 fI~LD--t~~~--~-----------~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (569)
+-++. +... . ....+..++..+.|++ .++..+|+++|-.......... ..+.....|.
T Consensus 141 VgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~----~~~~~~~~la 213 (277)
T cd07410 141 VGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL----TGENAAYELA 213 (277)
T ss_pred EEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc----CCccHHHHHH
Confidence 55544 2210 0 0112233444444443 4577899999988764321000 0111223344
Q ss_pred HH-cCCcEEEEccccCcce
Q 008343 407 YK-YGVDVVFNGHVHAYER 424 (569)
Q Consensus 407 ~~-~~VdlvlsGH~H~yeR 424 (569)
++ .+||++|+||.|....
T Consensus 214 ~~~~~vD~IlgGHsH~~~~ 232 (277)
T cd07410 214 EEVPGIDAILTGHQHRRFP 232 (277)
T ss_pred hcCCCCcEEEeCCCccccc
Confidence 44 5899999999997543
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.54 E-value=1.5e-06 Score=87.96 Aligned_cols=174 Identities=17% Similarity=0.166 Sum_probs=91.3
Q ss_pred eEEEEEcccCCCC--------C---hHHHHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHH
Q 008343 209 SRIAIVGDVGLTY--------N---TTSTVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPR 276 (569)
Q Consensus 209 ~rfavigD~g~~~--------~---~~~~~~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~ 276 (569)
++|+.++|+|.-. . ....++++.+.+++ +++.+||++..... . . + .+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~-------~------------~-~-~~ 59 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLL-------S------------T-A-TK 59 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccc-------h------------h-h-cC
Confidence 4677788877211 1 12345555556788 89999999843210 0 0 0 00
Q ss_pred HHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCC----------CCCCCCceeEEEEeCcEEE--EE
Q 008343 277 WDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK----------ESGSLSKFYYSFNAGGIHF--LM 344 (569)
Q Consensus 277 wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~----------~~~~~~~~yYsf~~G~v~f--I~ 344 (569)
.+...+.|+.+ . .-+.++||||+... ...+........+|-- +.-.....|.-++.+++++ |.
T Consensus 60 g~~~~~~l~~l--~-~d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG 134 (257)
T cd07406 60 GKQMVPVLNAL--G-VDLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLG 134 (257)
T ss_pred CccHHHHHHhc--C-CcEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEE
Confidence 01122334333 2 23678999999532 2334443333322210 0001124677888888654 55
Q ss_pred EeccccC------C---CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEE
Q 008343 345 LAAYVSF------D---KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (569)
Q Consensus 345 LDt~~~~------~---~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (569)
+-+.... . .-..-.+.+++.+++..+.++..+|++.|-+.... . ++.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~d------------~---~la~~~~~iD~I 199 (257)
T cd07406 135 LVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPND------------K---RLAREVPEIDLI 199 (257)
T ss_pred EecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchhh------------H---HHHHhCCCCceE
Confidence 4443111 0 01223344455443433456788999999875311 1 23333 479999
Q ss_pred EEccccCcc
Q 008343 415 FNGHVHAYE 423 (569)
Q Consensus 415 lsGH~H~ye 423 (569)
|+||.|..+
T Consensus 200 lgGH~H~~~ 208 (257)
T cd07406 200 LGGHDHEYI 208 (257)
T ss_pred EecccceeE
Confidence 999999866
No 57
>PRK09453 phosphodiesterase; Provisional
Probab=98.52 E-value=1.3e-06 Score=83.59 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=46.0
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (569)
+|++++||+|..... .++++.+.+.++|.|+++||++.. |.. .+..+.|+ .+...+.++.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~------~~~----------~~~~~~~~--~~~~~~~l~~~ 62 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYH------GPR----------NPLPEGYA--PKKVAELLNAY 62 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEccccccc------CcC----------CCCccccC--HHHHHHHHHhc
Confidence 589999999965322 234455556789999999999852 110 01111221 12233334333
Q ss_pred hccCCcEEecCCcccc
Q 008343 288 LSKVPIMVVEGNHEYE 303 (569)
Q Consensus 288 ~~~~P~~~v~GNHD~~ 303 (569)
..+++++.||||..
T Consensus 63 --~~~v~~V~GNhD~~ 76 (182)
T PRK09453 63 --ADKIIAVRGNCDSE 76 (182)
T ss_pred --CCceEEEccCCcch
Confidence 46899999999964
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.43 E-value=1.9e-06 Score=92.18 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=30.2
Q ss_pred CeEEEEEcccCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccc
Q 008343 208 PSRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYA 247 (569)
Q Consensus 208 ~~rfavigD~g~~~~~---------~----~~~~~l~~~~pDfvl~~GDl~Y~ 247 (569)
.+||++++|+|.+... . ++++.+.+.++|+||++||+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~ 55 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHE 55 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 5899999999987321 1 23444556799999999999964
No 59
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.30 E-value=1.3e-05 Score=81.29 Aligned_cols=176 Identities=17% Similarity=0.192 Sum_probs=87.8
Q ss_pred HHHHHHhC-CCCEE-EEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCcccc
Q 008343 226 TVSHMISN-RPDLI-LLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 226 ~~~~l~~~-~pDfv-l~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
.++++.+. .+|.+ +.+||+...... . +........+.|+. +++.++.||||+.
T Consensus 41 ~v~~~~~~~~~~~l~l~~GD~~~gs~~-------------------~--~~~~g~~~~~~l~~----~g~da~~GNHefd 95 (264)
T cd07411 41 LIKRIRAERNPNTLLLDGGDTWQGSGE-------------------A--LYTRGQAMVDALNA----LGVDAMVGHWEFT 95 (264)
T ss_pred HHHHHHHhcCCCeEEEeCCCccCCChH-------------------H--hhcCChhHHHHHHh----hCCeEEecccccc
Confidence 45555556 78876 679999953210 0 00011122233332 4555555999986
Q ss_pred ccccchhhHHhhhccCCCCC-------CCC-CCCceeEEEEeCcE--EEEEEeccccCC----------CCHHHHHHHHH
Q 008343 304 EQAENRTFVAYTSRFAFPSK-------ESG-SLSKFYYSFNAGGI--HFLMLAAYVSFD----------KSGDQYKWLEE 363 (569)
Q Consensus 304 ~~~~~~~~~~y~~~f~~P~~-------~~~-~~~~~yYsf~~G~v--~fI~LDt~~~~~----------~~~~Q~~WL~~ 363 (569)
.. ...+....+...+|-- +.+ .....|.-++.+++ -||.+.+..... ......+.+++
T Consensus 96 ~g--~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (264)
T cd07411 96 YG--PERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQE 173 (264)
T ss_pred cC--HHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHH
Confidence 32 2334444444443321 000 11123566788875 455554421100 01233455555
Q ss_pred HHhccc-cCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCcceeeccccCccCCCCCeEE
Q 008343 364 DLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHI 441 (569)
Q Consensus 364 ~L~~~~-~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyI 441 (569)
.+++.. +.+...+|++.|-+.... + .+.++ .+||++|+||.|..... |. ..-++++.+
T Consensus 174 ~~~~~~~~~~~D~iI~l~H~g~~~~-----------~----~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~v~ 233 (264)
T cd07411 174 VVVKLRREEGVDVVVLLSHNGLPVD-----------V----ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTLVV 233 (264)
T ss_pred HHHHHHHhCCCCEEEEEecCCchhh-----------H----HHHhcCCCCcEEEeCcccccccC-cc----cccCCEEEE
Confidence 544432 245778999999875321 1 12223 47999999999975322 10 012455555
Q ss_pred EECCCCc
Q 008343 442 TVGDGGN 448 (569)
Q Consensus 442 v~G~gG~ 448 (569)
-+|.-|.
T Consensus 234 ~~g~~~~ 240 (264)
T cd07411 234 EAGSHGK 240 (264)
T ss_pred EcCcccc
Confidence 5555544
No 60
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.29 E-value=3.5e-05 Score=77.58 Aligned_cols=189 Identities=17% Similarity=0.298 Sum_probs=102.3
Q ss_pred EEEEEcccCCCCChHH---HHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhh
Q 008343 210 RIAIVGDVGLTYNTTS---TVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (569)
Q Consensus 210 rfavigD~g~~~~~~~---~~~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (569)
||+++||.=....... .+.++.+ .++||++..||++-. |.. +. + ...+.|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g------g~g------------l~---~----~~~~~L~ 55 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAG------GKG------------IT---P----KIAKELL 55 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccC------CCC------------CC---H----HHHHHHH
Confidence 5889999754433332 3444443 478999999999842 211 00 1 1223333
Q ss_pred hhhccCCcEEecCCccccccccchhhHHhhhcc-------CCCCCCCCCCCceeEEEEeCcEEEEEEe--ccccCCCCHH
Q 008343 286 PVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRF-------AFPSKESGSLSKFYYSFNAGGIHFLMLA--AYVSFDKSGD 356 (569)
Q Consensus 286 ~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f-------~~P~~~~~~~~~~yYsf~~G~v~fI~LD--t~~~~~~~~~ 356 (569)
.+ .+- +++.||||+... ....+.+.. ++|.. .....|.-++.+++++-+++ +.........
T Consensus 56 ~~--G~D-~iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~---~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~ 125 (255)
T cd07382 56 SA--GVD-VITMGNHTWDKK----EILDFIDEEPRLLRPANYPPG---TPGRGYGVVEVNGKKIAVINLMGRVFMPPLDN 125 (255)
T ss_pred hc--CCC-EEEecccccCcc----hHHHHHhcCcCceEeeecCCC---CCCCCeEEEEECCEEEEEEEEecccCCCcCCC
Confidence 33 333 455699999743 223333322 22221 22345777888886655544 2221111122
Q ss_pred HHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCC
Q 008343 357 QYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPC 436 (569)
Q Consensus 357 Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~ 436 (569)
-++-+++.+++.+. +++.+||.+|--..+ ...++.. ...-+||+++.||+|...--. .+-|+
T Consensus 126 P~~~~~~~v~~lk~-~~D~IIV~~H~g~ts-----------Ek~ala~-~ldg~VdvIvGtHTHv~t~d~-----~il~~ 187 (255)
T cd07382 126 PFRAADELLEELKE-EADIIFVDFHAEATS-----------EKIALGW-YLDGRVSAVVGTHTHVQTADE-----RILPG 187 (255)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEECCCCCH-----------HHHHHHH-hCCCCceEEEeCCCCccCCcc-----EEeeC
Confidence 23446666665543 567899999974311 1122221 123359999999999853322 11367
Q ss_pred CCeEEE-ECCCCccCC
Q 008343 437 GPVHIT-VGDGGNREK 451 (569)
Q Consensus 437 g~vyIv-~G~gG~~e~ 451 (569)
|+.||+ .|.-|...+
T Consensus 188 gTa~itd~Gm~G~~~s 203 (255)
T cd07382 188 GTAYITDVGMTGPYDS 203 (255)
T ss_pred CeEEEecCccccCCCc
Confidence 999988 477776544
No 61
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.29 E-value=2.2e-05 Score=79.46 Aligned_cols=188 Identities=19% Similarity=0.245 Sum_probs=99.3
Q ss_pred EEEEcccCCCCChHHHH---HHHHh---CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008343 211 IAIVGDVGLTYNTTSTV---SHMIS---NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (569)
Q Consensus 211 favigD~g~~~~~~~~~---~~l~~---~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (569)
|+|.||.|.. ...++ +.+.+ .++|++|++||+.-.. +....++-+ ....|+ .+..|.+.+
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~----~~~d~~~~~-------~p~k~~-~~~~f~~~~ 66 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAVR----NEADLKCMA-------VPPKYR-KMGDFYKYY 66 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcC----Ccchhhhhc-------cchhhh-hhhhHHHHh
Confidence 5899999975 33333 33332 3689999999995211 111100100 011222 234454554
Q ss_pred hhhh-ccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeE-----EEEeCcEEEEEEeccc---cCC---
Q 008343 285 QPVL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAAYV---SFD--- 352 (569)
Q Consensus 285 ~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~G~v~fI~LDt~~---~~~--- 352 (569)
+... ..+|+++|.||||-.. .+.. ++..+. ...+.+| .|++++++|..|.... ++.
T Consensus 67 ~g~~~~p~~t~fi~GNHE~~~-----~l~~------l~~gg~-v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~ 134 (262)
T cd00844 67 SGEKKAPILTIFIGGNHEASN-----YLWE------LPYGGW-VAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGH 134 (262)
T ss_pred cCCccCCeeEEEECCCCCCHH-----HHHh------hcCCCe-ecCcEEEecCCCEEEECCeEEEEeccccccccccccc
Confidence 4432 4778899999999531 1111 111100 0123333 4667899999987632 111
Q ss_pred -----CCHHHHHHHH-------HHHhccccCCCCEEEEEeCCCccccCcccccc---------------hHHHHHHHHHH
Q 008343 353 -----KSGDQYKWLE-------EDLANVEREVTPWLVATWHAPWYSTYKAHYRE---------------AECMRVAMEDL 405 (569)
Q Consensus 353 -----~~~~Q~~WL~-------~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~---------------~~~~r~~l~~l 405 (569)
....++..+. +.|.... .. --|+++|.|+.......... ...-...+..+
T Consensus 135 ~~~~~~t~~~~rs~y~~r~~~~~kl~~~~-~~--vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~l 211 (262)
T cd00844 135 FERPPYSEDTKRSAYHVRNIEVFKLKQLK-QP--IDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEEL 211 (262)
T ss_pred ccCCCCCHHHHHHhhhhhHHHHHHHHhcC-CC--CcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHH
Confidence 1223333211 1122211 12 25889999987753211100 00113457789
Q ss_pred HHHcCCcEEEEccccC-cceeec
Q 008343 406 LYKYGVDVVFNGHVHA-YERSNR 427 (569)
Q Consensus 406 l~~~~VdlvlsGH~H~-yeR~~~ 427 (569)
+++.+....|+||.|. |++..|
T Consensus 212 l~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 212 LKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred HHHhCCCEEEEecCCcccceecC
Confidence 9999999999999998 776643
No 62
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.27 E-value=5.2e-06 Score=89.04 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=50.4
Q ss_pred eEEEEEcccCCC-CC--h-----------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchh
Q 008343 209 SRIAIVGDVGLT-YN--T-----------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQ 274 (569)
Q Consensus 209 ~rfavigD~g~~-~~--~-----------~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~ 274 (569)
+||++++|+|.+ .. . ...++.+.+.++||||++||+.... . |..
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~------~------------Ps~---- 58 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTN------N------------PSP---- 58 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCC------C------------CCH----
Confidence 589999999998 21 1 1244555678999999999999642 1 111
Q ss_pred HHHHHHHHhhhhhh-ccCCcEEecCCccccc
Q 008343 275 PRWDYWGRYMQPVL-SKVPIMVVEGNHEYEE 304 (569)
Q Consensus 275 ~~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~ 304 (569)
..-..+.+.++.+. .++|++++.||||...
T Consensus 59 ~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 59 RALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 11223445555553 5899999999999864
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.24 E-value=1.5e-05 Score=80.48 Aligned_cols=181 Identities=19% Similarity=0.207 Sum_probs=91.2
Q ss_pred eEEEEEcccCCCCC--------hH---HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008343 209 SRIAIVGDVGLTYN--------TT---STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (569)
Q Consensus 209 ~rfavigD~g~~~~--------~~---~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (569)
++|+.++|+|.... .. ..++++.+...++++.+||++..... ... ...
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-------------------~~~--~~g 59 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-------------------SDL--DKG 59 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-------------------hhh--cCC
Confidence 47899999996421 11 23344443456899999999853210 000 001
Q ss_pred HHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCC-------CCCC-CCceeEEEEeC-cE--EEEEEe
Q 008343 278 DYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ESGS-LSKFYYSFNAG-GI--HFLMLA 346 (569)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~~~-~~~~yYsf~~G-~v--~fI~LD 346 (569)
....+.|..+ ..-+ .++||||+.. +.+.+..+.+...+|-- +.+. .-..|.-++.+ ++ -||.+-
T Consensus 60 ~~~~~~ln~~--g~d~-~~~GNHefd~--G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 60 ETIIKIMNAV--GYDA-VTPGNHEFDY--GLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cHHHHHHHhc--CCcE-EccccccccC--CHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 1122334333 3344 5689999863 33444445454444421 1010 11235556777 64 455554
Q ss_pred ccc-cC----C--C---CHHHHHHHHHH-HhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEE
Q 008343 347 AYV-SF----D--K---SGDQYKWLEED-LANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVV 414 (569)
Q Consensus 347 t~~-~~----~--~---~~~Q~~WL~~~-L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~Vdlv 414 (569)
+.. .. . . -..-.+-+++. .....+.++.-+|++.|.+....... +. .. ++..+ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~~-----~~---~la~~~~giDvI 205 (257)
T cd07408 135 TPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-WT-----ST---ELAANVTGIDLI 205 (257)
T ss_pred CcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-cc-----HH---HHHHhCCCceEE
Confidence 421 00 0 0 01122334333 22222346778999999887553211 10 11 22223 489999
Q ss_pred EEccccCcce
Q 008343 415 FNGHVHAYER 424 (569)
Q Consensus 415 lsGH~H~yeR 424 (569)
|.||.|....
T Consensus 206 igGH~H~~~~ 215 (257)
T cd07408 206 IDGHSHTTIE 215 (257)
T ss_pred EeCCCccccc
Confidence 9999998654
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.21 E-value=3.1e-05 Score=79.68 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH--cCCcEEEEccccCcceeeccccCccCC
Q 008343 358 YKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK--YGVDVVFNGHVHAYERSNRVYNYTLDP 435 (569)
Q Consensus 358 ~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~--~~VdlvlsGH~H~yeR~~~v~n~~~~~ 435 (569)
.+.+++.+++.+..++..+|++.|-......... ..+.......+++.+ .+||++|+||.|..... +. ...
T Consensus 177 ~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~--~~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~-~~----~~~ 249 (288)
T cd07412 177 VEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDD--TCSAASGPIADIVNRLDPDVDVVFAGHTHQAYNC-TV----PAG 249 (288)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCc--cccccChhHHHHHhhcCCCCCEEEeCccCccccc-cc----cCc
Confidence 3445555555443467789999998765321110 000011122334444 37999999999986542 10 012
Q ss_pred CCCeEEEECCCCc
Q 008343 436 CGPVHITVGDGGN 448 (569)
Q Consensus 436 ~g~vyIv~G~gG~ 448 (569)
+++..+-.|+-|.
T Consensus 250 ~~~~v~q~g~~g~ 262 (288)
T cd07412 250 NPRLVTQAGSYGK 262 (288)
T ss_pred CCEEEEecChhhc
Confidence 4566666666555
No 65
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.19 E-value=2.3e-05 Score=74.16 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=29.1
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCccc
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTY 246 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y 246 (569)
++|+++||+|..... ....+.....++|+|||+||.+.
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~ 40 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTS 40 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCC
Confidence 689999999987532 23344445579999999999995
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.15 E-value=0.00018 Score=73.68 Aligned_cols=201 Identities=16% Similarity=0.202 Sum_probs=99.3
Q ss_pred CeEEEEEcccCCCCC--------------hHHHHHHHH----hCCCC-EEEEcCCcccccccccCCCCCccccccCCCCC
Q 008343 208 PSRIAIVGDVGLTYN--------------TTSTVSHMI----SNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (569)
Q Consensus 208 ~~rfavigD~g~~~~--------------~~~~~~~l~----~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~ 268 (569)
.++|+..+|+|.... ..+.++++. +.+++ ++|..||.+....+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 689999999996421 012233332 23455 67889999953211
Q ss_pred CccchhHHHHHHHHhhhhhhccCCcEEecCCccccccc-cchhhHHhhhccCCCC--------CCCCC---CCceeEEEE
Q 008343 269 IHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQA-ENRTFVAYTSRFAFPS--------KESGS---LSKFYYSFN 336 (569)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~-~~~~~~~y~~~f~~P~--------~~~~~---~~~~yYsf~ 336 (569)
...+...+....+.|..+ --=.+++||||+.... ....+..+.....+|- .+.+. ....|.-++
T Consensus 67 -~~~~~~~g~~~~~~mN~m---gyDa~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~ 142 (282)
T cd07407 67 -SDASPPPGSYSNPIFRMM---PYDLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFT 142 (282)
T ss_pred -eeeecCCChHHHHHHHhc---CCcEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEE
Confidence 111101122233444433 1226789999996321 1122222323222221 00001 112356667
Q ss_pred eC-cEE--EEEEecccc-------CCC--CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHH
Q 008343 337 AG-GIH--FLMLAAYVS-------FDK--SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMED 404 (569)
Q Consensus 337 ~G-~v~--fI~LDt~~~-------~~~--~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ 404 (569)
.+ +++ +|.+-+... +.. ...+.+|+.+.|++ .+...+|+++|....... +. .+....
T Consensus 143 ~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~~---~~~~~~ 211 (282)
T cd07407 143 TKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----EF---KVLHDA 211 (282)
T ss_pred cCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----cH---HHHHHH
Confidence 76 655 455533211 111 12233488777774 356779999998865421 11 111122
Q ss_pred HHHHc-CCc-EEEEccccCcceeeccccCccCCCCCeEEEECCCCc
Q 008343 405 LLYKY-GVD-VVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 405 ll~~~-~Vd-lvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
+.++. ++| ++|+||.|...... + .+|+..+-.|.-|.
T Consensus 212 la~~~~~id~~Ii~GHsH~~~~~~-~------~~~~~ivq~G~~g~ 250 (282)
T cd07407 212 IRKIFPDTPIQFLGGHSHVRDFTQ-Y------DSSSTGLESGRYLE 250 (282)
T ss_pred HHHhCCCCCEEEEeCCccccccee-c------cCcEEEEeccchhh
Confidence 33444 577 79999999753321 1 24555444555554
No 67
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=6.9e-06 Score=80.29 Aligned_cols=189 Identities=17% Similarity=0.242 Sum_probs=98.0
Q ss_pred EEcccCCCCChHH---HH-HHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008343 213 IVGDVGLTYNTTS---TV-SHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (569)
Q Consensus 213 vigD~g~~~~~~~---~~-~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (569)
+|+|+|.+..... .+ +-+... +.|.+.++||++. .| -|.. .+.+...+..+.+..
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w--~g~~---------------~~~~~~~~V~~~l~~ 62 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GW--IGDD---------------EPPQLHRQVAQKLLR 62 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hh--hcCC---------------cccHHHHHHHHHHHH
Confidence 6899999844332 22 233333 4499999999994 23 1220 111222233333444
Q ss_pred hh-ccCCcEEecCCccccccccchhhHHhhhccC-CCCCCCCCCCceeEEEEeCcEEEEEEeccccCCCCHHHHHHHHHH
Q 008343 287 VL-SKVPIMVVEGNHEYEEQAENRTFVAYTSRFA-FPSKESGSLSKFYYSFNAGGIHFLMLAAYVSFDKSGDQYKWLEED 364 (569)
Q Consensus 287 l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~~~~~~~~Q~~WL~~~ 364 (569)
+. ...|++.++||||+.- ...+...+. +- ..+.+--+++-|-+++++-.- .......++.|++..
T Consensus 63 ~a~~G~~v~~i~GN~Dfll------~~~f~~~~g~~~------l~~~~~~~~l~g~~~Ll~HGD-~f~t~~~~y~~~r~~ 129 (237)
T COG2908 63 LARKGTRVYYIHGNHDFLL------GKRFAQEAGGMT------LLPDPIVLDLYGKRILLAHGD-TFCTDDRAYQWFRYK 129 (237)
T ss_pred HHhcCCeEEEecCchHHHH------HHHHHhhcCceE------EcCcceeeeecCcEEEEEeCC-cccchHHHHHHHHHH
Confidence 44 5699999999999741 112222222 10 111222344444555554321 122335556666554
Q ss_pred HhccccCCCCEE-EEEeCCCcc----------ccC--ccc-ccc----hHHHHHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 365 LANVEREVTPWL-VATWHAPWY----------STY--KAH-YRE----AECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 365 L~~~~~~~~~wv-Iv~~H~P~y----------~s~--~~~-~~~----~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
.... |. .++.+.|.. +.. ... ... .+.+.+...+.+.+++||.+++||+|.-.-.
T Consensus 130 ~~~~------~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~- 202 (237)
T COG2908 130 VHWA------WLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIH- 202 (237)
T ss_pred cccH------HHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhc-
Confidence 3221 11 111222221 000 000 000 1223456667888999999999999986554
Q ss_pred ccccCccCCCCCeEEEECCCC
Q 008343 427 RVYNYTLDPCGPVHITVGDGG 447 (569)
Q Consensus 427 ~v~n~~~~~~g~vyIv~G~gG 447 (569)
+-.++.||+.|+..
T Consensus 203 -------~i~~~~yi~lGdW~ 216 (237)
T COG2908 203 -------NIPGITYINLGDWV 216 (237)
T ss_pred -------cCCCceEEecCcch
Confidence 23569999999998
No 68
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.10 E-value=0.00023 Score=71.99 Aligned_cols=194 Identities=18% Similarity=0.206 Sum_probs=105.6
Q ss_pred eEEEEEcccCCCCCh---HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008343 209 SRIAIVGDVGLTYNT---TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (569)
Q Consensus 209 ~rfavigD~g~~~~~---~~~~~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (569)
+||+++||.=....- ...+..+.+ .++||++..||++-. |... . + ...+.|
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g------G~Gi------------~---~----~~~~~L 55 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH------GKGL------------T---L----KIYEFL 55 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC------CCCC------------C---H----HHHHHH
Confidence 589999998533221 223444443 478999999999832 2111 0 1 112223
Q ss_pred hhhhccCCcEEecCCccccccccchhhHH---hhhccCCCCCCCCCCCceeEEEEeCcEEEEEEec--cccCCC--CHHH
Q 008343 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVA---YTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAA--YVSFDK--SGDQ 357 (569)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~---y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt--~~~~~~--~~~Q 357 (569)
... .+-++.+ |||++....-...... .....++|.. ..+..|..++.++.++-+++- ...... ...-
T Consensus 56 ~~~--GvDviT~-GNH~~Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~P 129 (266)
T TIGR00282 56 KQS--GVNYITM-GNHTWFQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNP 129 (266)
T ss_pred Hhc--CCCEEEc-cchhccCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCH
Confidence 322 4555555 9999974321011111 1111233332 223446667778766655553 211111 1112
Q ss_pred HHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCC
Q 008343 358 YKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCG 437 (569)
Q Consensus 358 ~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g 437 (569)
.+-+++.+++.+. +++.+||.+|---- .. +.....+.+-+|++|+.-|+|...--.++ =|+|
T Consensus 130 f~~~d~~i~~lk~-~~d~IIVd~Haeat-----------sE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~i-----l~~g 191 (266)
T TIGR00282 130 FKVLKELINMLKK-DCDLIFVDFHAETT-----------SE-KNAFGMAFDGYVTAVVGTHTHVPTADLRI-----LPKG 191 (266)
T ss_pred HHHHHHHHHhhhc-CCCEEEEEeCCCCH-----------HH-HHHHHHHhCCCccEEEeCCCCCCCCccee-----CCCC
Confidence 2334445554432 36789999996431 11 33346677789999999999975443222 3689
Q ss_pred CeEEE-ECCCCccCC
Q 008343 438 PVHIT-VGDGGNREK 451 (569)
Q Consensus 438 ~vyIv-~G~gG~~e~ 451 (569)
+.||+ +|+-|...+
T Consensus 192 tayitD~Gm~G~~~s 206 (266)
T TIGR00282 192 TAYITDVGMTGPFGS 206 (266)
T ss_pred CEEEecCCcccCccc
Confidence 99998 588887654
No 69
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.10 E-value=4.4e-05 Score=78.23 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=82.1
Q ss_pred HHHHHHhCCCC-EEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCccccc
Q 008343 226 TVSHMISNRPD-LILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEE 304 (569)
Q Consensus 226 ~~~~l~~~~pD-fvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~ 304 (569)
.++++.+..++ +++.+||++..... ...+ +.....+.|+.+ ..- +.++||||+..
T Consensus 40 ~v~~~r~~~~~~l~ld~GD~~~gs~~-------------------~~~~--~g~~~~~~ln~~--g~D-~~~lGNHefd~ 95 (281)
T cd07409 40 LVKELRAENPNVLFLNAGDAFQGTLW-------------------YTLY--KGNADAEFMNLL--GYD-AMTLGNHEFDD 95 (281)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCcch-------------------hhhc--CChHHHHHHHhc--CCC-EEEeccccccC
Confidence 34555555676 56679999853211 0000 011223344433 333 55679999974
Q ss_pred cccchhhHHhhhccCCCCCC------C-----CCCCceeEEEEeCcEEE--EEEecccc--C-C-----CCHHHHHHHHH
Q 008343 305 QAENRTFVAYTSRFAFPSKE------S-----GSLSKFYYSFNAGGIHF--LMLAAYVS--F-D-----KSGDQYKWLEE 363 (569)
Q Consensus 305 ~~~~~~~~~y~~~f~~P~~~------~-----~~~~~~yYsf~~G~v~f--I~LDt~~~--~-~-----~~~~Q~~WL~~ 363 (569)
. .+.+..+.....+|--. . ......|.-++.+++++ |.+-+... . . .-.+..+.+++
T Consensus 96 G--~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~ 173 (281)
T cd07409 96 G--VEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQK 173 (281)
T ss_pred C--HHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHH
Confidence 2 23344444433333210 0 01123466678888554 55443211 0 0 01233456777
Q ss_pred HHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCcc
Q 008343 364 DLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYE 423 (569)
Q Consensus 364 ~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~ye 423 (569)
.+++.+..++.-+|++.|-.... . . ++.++ .+||++|+||.|...
T Consensus 174 ~v~~lr~~~~D~II~l~H~G~~~-----------d-~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 174 EADKLKAQGVNKIIALSHSGYEV-----------D-K---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred HHHHHHhcCCCEEEEEeccCchh-----------H-H---HHHHcCCCCcEEEeCCcCccc
Confidence 66665545678899999986421 0 1 22233 489999999999864
No 70
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.06 E-value=0.00012 Score=89.02 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=95.9
Q ss_pred CCeEEEEEcccCCCCC-hH---HHHHHHHhCCCCEEEE-cCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008343 207 YPSRIAIVGDVGLTYN-TT---STVSHMISNRPDLILL-VGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (569)
Q Consensus 207 ~~~rfavigD~g~~~~-~~---~~~~~l~~~~pDfvl~-~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (569)
..++|++++|+|.... .. ..++++.+.+++.+++ +||++..... ... .......
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~-------------------~~~--~~g~~~~ 717 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLY-------------------SNL--LKGLPVL 717 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcch-------------------hhh--cCChHHH
Confidence 4699999999996542 22 3455555668887755 9999853210 000 0111223
Q ss_pred HhhhhhhccCCcEEecCCccccccccchhhHHhhhccC------------CCC-------CCCCC---CCceeEEEEeCc
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFA------------FPS-------KESGS---LSKFYYSFNAGG 339 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~------------~P~-------~~~~~---~~~~yYsf~~G~ 339 (569)
+.|..+ -.-++++||||+... ...+..+..... +|- ...+. ....|.-++.++
T Consensus 718 ~~ln~l---g~d~~~~GNHEfd~g--~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G 792 (1163)
T PRK09419 718 KMMKEM---GYDASTFGNHEFDWG--PDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG 792 (1163)
T ss_pred HHHhCc---CCCEEEecccccccC--hHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC
Confidence 334332 234669999999633 223333322211 121 00111 123466678888
Q ss_pred EE--EEEEeccc-cC----C-----CCHHHHHHHHHHHhccc-cCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHH
Q 008343 340 IH--FLMLAAYV-SF----D-----KSGDQYKWLEEDLANVE-REVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLL 406 (569)
Q Consensus 340 v~--fI~LDt~~-~~----~-----~~~~Q~~WL~~~L~~~~-~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll 406 (569)
++ ||.+-+.. .. . .-....+.+++.+++.+ ..++..+|++.|.......... + ....+|.
T Consensus 793 ~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~--~-----~~~~~lA 865 (1163)
T PRK09419 793 KKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG--E-----ITGLELA 865 (1163)
T ss_pred EEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccccc--c-----cHHHHHH
Confidence 55 45554321 00 0 01123344555444443 2467789999999875432111 1 1223444
Q ss_pred HHc-CCcEEEEccccCcc
Q 008343 407 YKY-GVDVVFNGHVHAYE 423 (569)
Q Consensus 407 ~~~-~VdlvlsGH~H~ye 423 (569)
++. +||++|.||.|..-
T Consensus 866 ~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 866 KKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred HhCCCCCEEEeCCCCccc
Confidence 443 79999999999754
No 71
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.00 E-value=6.2e-05 Score=83.24 Aligned_cols=204 Identities=18% Similarity=0.210 Sum_probs=101.4
Q ss_pred CCeEEEEEcccCCCCCh------HHHHHHHH---------hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCcc
Q 008343 207 YPSRIAIVGDVGLTYNT------TSTVSHMI---------SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHE 271 (569)
Q Consensus 207 ~~~rfavigD~g~~~~~------~~~~~~l~---------~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e 271 (569)
.++++++++|+|.+... ...++.+. ..+++.++++||++...+... +... +....+
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p-~~~~--------~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP-GQEE--------ELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc-cchh--------hccchh
Confidence 36899999999987542 12334444 457899999999995321000 0000 000001
Q ss_pred chhHHHHHHHHhhhhhhccCCcEEecCCccccccccc--hhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccc
Q 008343 272 TYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN--RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV 349 (569)
Q Consensus 272 ~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~ 349 (569)
.+ ..++.+.++++.+...+|+++++||||....... .-...|...+.... .....+ -+.+++++.+|++.-...
T Consensus 313 ~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~~--v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 313 IY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEHN--VTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcCC--eEEecC-CeEEEECCEEEEEECCCC
Confidence 11 1234455667777778999999999997532110 00122222221110 001112 235777888887765321
Q ss_pred -----cCC---CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccC
Q 008343 350 -----SFD---KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 350 -----~~~---~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+- ....-.+.++..|... .-+| ..-.+.|.|....... ++++ -.|+++.||.|.
T Consensus 389 idDl~~~i~~~s~~~p~~~m~~~l~~r--HlaP--t~p~~~~~~p~~~D~l------------vi~~-~Pdv~~~GH~H~ 451 (504)
T PRK04036 389 IDDVISLIPGASYEKPGKAMEELLKRR--HLAP--IYGGRTPIAPEKEDYL------------VIDE-VPDIFHTGHVHI 451 (504)
T ss_pred HHHHHhhcccccccCHHHHHHHHHHhc--ccCC--CCCCCEEeCcCCCCCE------------EEec-CCCEEEeCCCCc
Confidence 110 1122345555555431 1111 0001122222111000 1122 258999999999
Q ss_pred cceeeccccCccCCCCCeEEEECCCCc
Q 008343 422 YERSNRVYNYTLDPCGPVHITVGDGGN 448 (569)
Q Consensus 422 yeR~~~v~n~~~~~~g~vyIv~G~gG~ 448 (569)
+.... -.|+.+|.+|+.-.
T Consensus 452 ~~~~~--------~~g~~~IN~gsf~~ 470 (504)
T PRK04036 452 NGYGK--------YRGVLLINSGTWQA 470 (504)
T ss_pred cceEE--------ECCEEEEECCcccc
Confidence 76652 24677887777543
No 72
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.95 E-value=0.00022 Score=73.32 Aligned_cols=188 Identities=20% Similarity=0.178 Sum_probs=89.2
Q ss_pred eEEEEEcccCCCCC-----------hHHHHHHHHhC----CC-CEEEEcCCcccccccccCCCCCccccccCCCCCCccc
Q 008343 209 SRIAIVGDVGLTYN-----------TTSTVSHMISN----RP-DLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHET 272 (569)
Q Consensus 209 ~rfavigD~g~~~~-----------~~~~~~~l~~~----~p-Dfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~ 272 (569)
++|+..+|+|.... ....++++.+. .+ -+++.+||+... +. ....
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~G-------s~------------~~~~ 61 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTG-------VP------------ESDL 61 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC-------ch------------hHHh
Confidence 47888999986421 12334444432 33 488999999842 21 0000
Q ss_pred hhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCC--C----CCC-CCCceeEEEEeCcEEE--E
Q 008343 273 YQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPS--K----ESG-SLSKFYYSFNAGGIHF--L 343 (569)
Q Consensus 273 Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~--~----~~~-~~~~~yYsf~~G~v~f--I 343 (569)
++ .....+.|..+ ..- ..++||||+... ...+........+|- . ..+ .....|.-++.+++++ |
T Consensus 62 ~~--g~~~~~~~n~~--g~D-a~~~GNHEfD~G--~~~L~~~~~~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgvi 134 (285)
T cd07405 62 QD--AEPDFRGMNLV--GYD-AMAVGNHEFDNP--LEVLRQQMKWANFPLLSANIYQESGERLFKPYALFDLGGLKIAVI 134 (285)
T ss_pred cC--cchHHHHHHhh--CCc-EEeecccccccC--HHHHHHHHhhCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEE
Confidence 00 01112334333 333 456799999743 233333333222221 1 001 1123466677888664 4
Q ss_pred EEecccc-C--C----C---CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcE
Q 008343 344 MLAAYVS-F--D----K---SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDV 413 (569)
Q Consensus 344 ~LDt~~~-~--~----~---~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~Vdl 413 (569)
.+-+... . . . -....+=+++.+++.+..++.-+|++.|-............ .....+.+.+...+||+
T Consensus 135 G~t~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~--~~~~~lA~~~~~~giD~ 212 (285)
T cd07405 135 GLTTDDTAKIGNPAYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSNA--PGDVEMARALPAGGLDL 212 (285)
T ss_pred EecccccccccCcCCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccccC--chHHHHHHhcCCCCCCE
Confidence 4433210 0 0 0 01122223333333322357789999999875432110000 01122222222358999
Q ss_pred EEEccccCcce
Q 008343 414 VFNGHVHAYER 424 (569)
Q Consensus 414 vlsGH~H~yeR 424 (569)
+|.||.|....
T Consensus 213 IigGHsH~~~~ 223 (285)
T cd07405 213 IVGGHSQDPVC 223 (285)
T ss_pred EEeCCCCcccc
Confidence 99999998543
No 73
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.91 E-value=7.8e-05 Score=78.67 Aligned_cols=113 Identities=17% Similarity=0.299 Sum_probs=69.9
Q ss_pred CeEEEEEcccCCCCChH------------------HHHHHH-HhCCCCEEEEcCCcccccccccCCCCCccccccCCCCC
Q 008343 208 PSRIAIVGDVGLTYNTT------------------STVSHM-ISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSP 268 (569)
Q Consensus 208 ~~rfavigD~g~~~~~~------------------~~~~~l-~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~ 268 (569)
++|++.++|.|.-.+.. ..+..+ ...+||.++++||+.++ |...+
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDe------G~~~~---------- 111 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDE------GQWAG---------- 111 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEecccccc------CccCC----------
Confidence 79999999999764211 111111 13599999999999963 33211
Q ss_pred CccchhHHHHHHHHhhhhhh---ccCCcEEecCCccccccccc--hhhHHhhhccCCCCCCCCCCCceeEEEEeCcEEEE
Q 008343 269 IHETYQPRWDYWGRYMQPVL---SKVPIMVVEGNHEYEEQAEN--RTFVAYTSRFAFPSKESGSLSKFYYSFNAGGIHFL 343 (569)
Q Consensus 269 ~~e~Y~~~wd~~~~~l~~l~---~~~P~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI 343 (569)
. ++|.+..+-++.+. .+++.+.++||||++..... .....|.+.| ++...+|+.|++.|+
T Consensus 112 -~----eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~f----------g~~~r~f~v~~~tf~ 176 (410)
T KOG3662|consen 112 -D----EEFKKRYERFKKIFGRKGNIKVIYIAGNHDIGFGNELIPEWIDRFESVF----------GPTERRFDVGNLTFV 176 (410)
T ss_pred -h----HHHHHHHHHHHHhhCCCCCCeeEEeCCccccccccccchhHHHHHHHhh----------cchhhhhccCCceeE
Confidence 1 33433322233332 57999999999999743211 1123344444 224567999999999
Q ss_pred EEeccccC
Q 008343 344 MLAAYVSF 351 (569)
Q Consensus 344 ~LDt~~~~ 351 (569)
++|++...
T Consensus 177 ~~d~~~ls 184 (410)
T KOG3662|consen 177 MFDSNALS 184 (410)
T ss_pred Eeeehhhc
Confidence 99987543
No 74
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=4e-05 Score=77.31 Aligned_cols=73 Identities=22% Similarity=0.392 Sum_probs=47.9
Q ss_pred eEEEEEcccCCCCCh---------H----HHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008343 209 SRIAIVGDVGLTYNT---------T----STVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (569)
Q Consensus 209 ~rfavigD~g~~~~~---------~----~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (569)
+||++++|+|.+... . ..++.+.+.++|+||++||++... . + .. .
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~------~------------p--~~--~ 58 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTA------N------------P--PA--E 58 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCC------C------------C--CH--H
Confidence 589999999987431 1 233344567899999999999531 1 1 01 1
Q ss_pred HHHHHHHhhhhhhc-c-CCcEEecCCcccc
Q 008343 276 RWDYWGRYMQPVLS-K-VPIMVVEGNHEYE 303 (569)
Q Consensus 276 ~wd~~~~~l~~l~~-~-~P~~~v~GNHD~~ 303 (569)
....+.++++.+.. . +|+++++||||..
T Consensus 59 ~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 59 AQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 22234455555542 3 8999999999985
No 75
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.84 E-value=0.00011 Score=69.31 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.1
Q ss_pred cCCcEEEEccccCccee
Q 008343 409 YGVDVVFNGHVHAYERS 425 (569)
Q Consensus 409 ~~VdlvlsGH~H~yeR~ 425 (569)
.+.+++++||+|..+..
T Consensus 124 ~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 124 DRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCCeEEEEeeeCCCCCC
Confidence 46789999999987665
No 76
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.81 E-value=2.8e-05 Score=76.02 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEEEEcccCCCCChH-HHHHHHHh-CCCCEEEEcCCccc
Q 008343 210 RIAIVGDVGLTYNTT-STVSHMIS-NRPDLILLVGDVTY 246 (569)
Q Consensus 210 rfavigD~g~~~~~~-~~~~~l~~-~~pDfvl~~GDl~Y 246 (569)
|++++||+|...... ++++.+.. .++|.++++||+++
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~ 40 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLID 40 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCccc
Confidence 789999999653221 22222221 35899999999995
No 77
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.75 E-value=0.0003 Score=70.49 Aligned_cols=82 Identities=18% Similarity=0.282 Sum_probs=47.6
Q ss_pred EEEcccCCCCCh--H----HHHHHHHhC-----CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHH
Q 008343 212 AIVGDVGLTYNT--T----STVSHMISN-----RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYW 280 (569)
Q Consensus 212 avigD~g~~~~~--~----~~~~~l~~~-----~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~ 280 (569)
++++|+|.+... . ..++.+... ++|.|+++||++...... .+.. .....+.....+..+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~-~~~~---------~~~~~~~~~~~~~~~ 71 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVY-PGQE---------EELEILDIYEQYEEA 71 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccC-Ccch---------hhhhhhhHHHHHHHH
Confidence 689999976432 1 222333332 469999999999531000 0000 000000111234556
Q ss_pred HHhhhhhhccCCcEEecCCcccc
Q 008343 281 GRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
.++++.+...+|+++++||||..
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~ 94 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAV 94 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCcc
Confidence 67777777789999999999985
No 78
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.75 E-value=0.00063 Score=75.82 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCeEEEEEcccCCCCC------------hH----HHHHHHHhC-CCCEEEEcCCcccccccccCCCCCccccccCCCCCC
Q 008343 207 YPSRIAIVGDVGLTYN------------TT----STVSHMISN-RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPI 269 (569)
Q Consensus 207 ~~~rfavigD~g~~~~------------~~----~~~~~l~~~-~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~ 269 (569)
..++|+..+|+|.... .. ..++++.+. +..++|.+||++......+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~---------------- 88 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY---------------- 88 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc----------------
Confidence 4799999999997533 11 223444443 34689999999964211100
Q ss_pred ccchhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCC------C---CCCCCceeEEEEeCcE
Q 008343 270 HETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK------E---SGSLSKFYYSFNAGGI 340 (569)
Q Consensus 270 ~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~------~---~~~~~~~yYsf~~G~v 340 (569)
........+.|..+ -.=..+.||||+... .+.+..+.....+|-- . .......|.-++.+++
T Consensus 89 ----~~~g~~~~~~mN~m---~yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 89 ----LTKGEPTVDLLNAL---GYDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred ----ccCCChHHHHHhhc---CCcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 00111112333332 223678999999732 3445555555555510 1 1122356788888885
Q ss_pred E--EEEEecc-cc-C---C-----CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH
Q 008343 341 H--FLMLAAY-VS-F---D-----KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK 408 (569)
Q Consensus 341 ~--fI~LDt~-~~-~---~-----~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~ 408 (569)
+ +|.+-+. .. + . .-....+++++.+.+..+++..-+|++.|-+............ .... +..
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~-~~~~----~~~- 233 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVP-GDVD----VAV- 233 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccccc-cccc----ccc-
Confidence 4 4555531 10 1 1 1235567777777776554477899999999875422111100 0000 000
Q ss_pred cCCcEEEEccccCc
Q 008343 409 YGVDVVFNGHVHAY 422 (569)
Q Consensus 409 ~~VdlvlsGH~H~y 422 (569)
.++|+++.||.|.+
T Consensus 234 ~~iD~i~~GH~H~~ 247 (517)
T COG0737 234 PGIDLIIGGHSHTV 247 (517)
T ss_pred cCcceEeccCCccc
Confidence 44999999999964
No 79
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.70 E-value=0.0001 Score=79.34 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=46.9
Q ss_pred eEEEEEcccCCCCCh-------------HHHHHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008343 209 SRIAIVGDVGLTYNT-------------TSTVSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (569)
Q Consensus 209 ~rfavigD~g~~~~~-------------~~~~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (569)
+||++++|+|.+... ...++.+.+.+||+||++||+... +. + ..+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~------~~------------p--~~~-- 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDT------GS------------P--PSY-- 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccC------CC------------C--cHH--
Confidence 589999999987321 123334456799999999999852 11 0 001
Q ss_pred HHHHHHHhhhhhh-ccCCcEEecCCccccc
Q 008343 276 RWDYWGRYMQPVL-SKVPIMVVEGNHEYEE 304 (569)
Q Consensus 276 ~wd~~~~~l~~l~-~~~P~~~v~GNHD~~~ 304 (569)
....+.+++..+. .++|+++++||||...
T Consensus 59 a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~ 88 (407)
T PRK10966 59 ARELYNRFVVNLQQTGCQLVVLAGNHDSVA 88 (407)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCChh
Confidence 1122333444433 3689999999999853
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.68 E-value=0.00085 Score=75.25 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=59.7
Q ss_pred cEEecCCccccccccchhhHHhhhccCCCCC------CCC----CCCceeEEEEeCc--EEEEEEecccc-C---CCC--
Q 008343 293 IMVVEGNHEYEEQAENRTFVAYTSRFAFPSK------ESG----SLSKFYYSFNAGG--IHFLMLAAYVS-F---DKS-- 354 (569)
Q Consensus 293 ~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~------~~~----~~~~~yYsf~~G~--v~fI~LDt~~~-~---~~~-- 354 (569)
=+.++||||+.. +...+..+.....+|-- ... ..-..|.-++.++ +-||.|.+... . ...
T Consensus 84 Da~~lGNHEFd~--G~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~ 161 (550)
T TIGR01530 84 DFFTLGNHEFDA--GNEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKD 161 (550)
T ss_pred CEEEeccccccC--CHHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCc
Confidence 467899999963 33344444444333321 000 1123566678887 55677754211 0 110
Q ss_pred ---HHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCcc
Q 008343 355 ---GDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYE 423 (569)
Q Consensus 355 ---~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~ye 423 (569)
....+=+++.+++.++.+..-+|++.|..... . ..+.++ .+||++|+||+|.+-
T Consensus 162 ~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 162 IKFIDEIAAAQIAANALKQQGINKIILLSHAGFEK--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred eEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcHH--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 11122233333333224567799999975321 0 123333 379999999999954
No 81
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.66 E-value=0.00075 Score=75.79 Aligned_cols=186 Identities=18% Similarity=0.185 Sum_probs=91.3
Q ss_pred CCeEEEEEcccCCCCC--------hH---HHHHHHHhC----CC-CEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008343 207 YPSRIAIVGDVGLTYN--------TT---STVSHMISN----RP-DLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (569)
Q Consensus 207 ~~~rfavigD~g~~~~--------~~---~~~~~l~~~----~p-Dfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (569)
..++|+.++|+|.... .. ..++++.+. .+ -++|..||+..... ..
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~-------------------~s 93 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVP-------------------ES 93 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceE-------------------hh
Confidence 4799999999997532 11 223333321 34 47899999984321 00
Q ss_pred cchhHHHHHHHHhhhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCC-------CCC-CCCceeEEEEeCcEEE
Q 008343 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSK-------ESG-SLSKFYYSFNAGGIHF 342 (569)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~-------~~~-~~~~~yYsf~~G~v~f 342 (569)
..++ .....+.|..+ ..- ..++||||+... ...+..+.....+|-- ..+ ..-..|.-++.+++++
T Consensus 94 ~~~~--g~~~i~~mN~~--g~D-a~tlGNHEFD~G--~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kI 166 (551)
T PRK09558 94 DLQD--AEPDFRGMNLI--GYD-AMAVGNHEFDNP--LSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKI 166 (551)
T ss_pred hhcC--CchhHHHHhcC--CCC-EEcccccccCcC--HHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEE
Confidence 0010 01112334333 232 556799999743 2334444333333321 001 1123466678888654
Q ss_pred --EEEecccc--C-CC-------CHHHHHHHHHHHhcccc-CCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHc
Q 008343 343 --LMLAAYVS--F-DK-------SGDQYKWLEEDLANVER-EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY 409 (569)
Q Consensus 343 --I~LDt~~~--~-~~-------~~~Q~~WL~~~L~~~~~-~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~ 409 (569)
|.+-+... . .. -....+-+++.+++.+. .++.-+|++.|.......... ..... -..+.++.
T Consensus 167 giiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~-~~~~~----d~~la~~~ 241 (551)
T PRK09558 167 AVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHG-SNAPG----DVEMARSL 241 (551)
T ss_pred EEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccC-CCCcc----HHHHHHhC
Confidence 44433211 0 00 01122233444433332 467789999998875422110 00000 02334443
Q ss_pred ---CCcEEEEccccCcc
Q 008343 410 ---GVDVVFNGHVHAYE 423 (569)
Q Consensus 410 ---~VdlvlsGH~H~ye 423 (569)
+||++|.||.|..-
T Consensus 242 ~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 242 PAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CccCceEEEeCCCCccc
Confidence 79999999999753
No 82
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.66 E-value=0.00011 Score=77.43 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=46.3
Q ss_pred eEEEEEcccCCCCCh---------HHH----HHHHHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008343 209 SRIAIVGDVGLTYNT---------TST----VSHMISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (569)
Q Consensus 209 ~rfavigD~g~~~~~---------~~~----~~~l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (569)
+||+++||+|.+... ... ++.+.++++|+||++||+..... . +. ..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~----~-------------~~----~~ 59 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRK----A-------------IT----QN 59 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCC----C-------------CC----HH
Confidence 589999999987431 123 33445679999999999985310 0 00 01
Q ss_pred HHHHHHH-hhhhhh-ccCCcEEecCCcccc
Q 008343 276 RWDYWGR-YMQPVL-SKVPIMVVEGNHEYE 303 (569)
Q Consensus 276 ~wd~~~~-~l~~l~-~~~P~~~v~GNHD~~ 303 (569)
......+ +++.+. ..+|+++++||||..
T Consensus 60 ~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 60 TMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 1122222 233333 479999999999975
No 83
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.63 E-value=0.00011 Score=71.94 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCcEEEEccccCcce
Q 008343 401 AMEDLLYKYGVDVVFNGHVHAYER 424 (569)
Q Consensus 401 ~l~~ll~~~~VdlvlsGH~H~yeR 424 (569)
.+..+|..++.++++.||+|.-..
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~ 181 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGG 181 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecC
Confidence 577888999999999999997543
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.58 E-value=0.0014 Score=59.80 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=26.8
Q ss_pred EEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 376 LVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 376 vIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
.|++.|.|.-..... + ........+.++++.+.||.|+ ++.
T Consensus 110 ~~~LsHyP~~~~~~~--~------~~~r~~y~~~~~~llIHGH~H~-~~~ 150 (186)
T COG4186 110 DVYLSHYPRPGQDHP--G------MESRFDYLRLRVPLLIHGHLHS-QFP 150 (186)
T ss_pred EEEEEeCCCCCCCCc--c------hhhhHHHHhccCCeEEeccccc-ccc
Confidence 689999997553211 1 1222344556899999999999 443
No 85
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.55 E-value=0.00092 Score=69.56 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHc-CCcEEEEccccCcc
Q 008343 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYE 423 (569)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~ye 423 (569)
.+..-+|+++|---+. .. ..|.++. +||++|.||.|.+-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4567799999984211 11 1244443 79999999999864
No 86
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.52 E-value=0.001 Score=68.23 Aligned_cols=182 Identities=21% Similarity=0.282 Sum_probs=102.0
Q ss_pred eEEEEEcccCCCCC-hHHHHHHHHhC---CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHh-
Q 008343 209 SRIAIVGDVGLTYN-TTSTVSHMISN---RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRY- 283 (569)
Q Consensus 209 ~rfavigD~g~~~~-~~~~~~~l~~~---~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~- 283 (569)
+||+|-|++|...+ ...++..+.+. +.|++|++||+---. |+....|- .+...|+..- .|.+.
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavR----n~~D~~si-------avPpKy~~m~-~F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVR----NEQDLKSI-------AVPPKYRRMG-DFYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhc----chhhcccc-------cCCHHHHHHH-HHHHHh
Confidence 58999999997633 34566666654 789999999995321 33322111 1223444322 22222
Q ss_pred hhhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCCCCCCceeE-----EEEeCcEEEEEEecc---ccCCC--
Q 008343 284 MQPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKESGSLSKFYY-----SFNAGGIHFLMLAAY---VSFDK-- 353 (569)
Q Consensus 284 l~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~G~v~fI~LDt~---~~~~~-- 353 (569)
-....+.+|.+++-||||.. +|.... |..+ ....+.|| ..++||+|+-.|..- .+|..
T Consensus 69 sge~~APVlTIFIGGNHEAs---------nyL~eL--pyGG-wVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEAS---------NYLQEL--PYGG-WVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHH---------HHHHhc--ccCc-eeccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 23445678999999999974 333322 2211 12346676 367899999888752 22221
Q ss_pred ---------------CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHH-------H----------HHH
Q 008343 354 ---------------SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAEC-------M----------RVA 401 (569)
Q Consensus 354 ---------------~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~-------~----------r~~ 401 (569)
.-.+.+ ...|.+. +.|-=|+++|.=+-... .+++... . ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 011111 1122232 23335777886433221 1111111 1 246
Q ss_pred HHHHHHHcCCcEEEEccccC
Q 008343 402 MEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 402 l~~ll~~~~VdlvlsGH~H~ 421 (569)
+++||.+.+...+|+.|.|.
T Consensus 210 ~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhhHhh
Confidence 77899999999999999996
No 87
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.49 E-value=0.00019 Score=70.71 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=26.7
Q ss_pred EEEEEcccCCCCCh-HHHHHHHHhC-CCCEEEEcCCccc
Q 008343 210 RIAIVGDVGLTYNT-TSTVSHMISN-RPDLILLVGDVTY 246 (569)
Q Consensus 210 rfavigD~g~~~~~-~~~~~~l~~~-~pDfvl~~GDl~Y 246 (569)
|++++||+|..... .++++.+... +.|-++++||++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvD 56 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLID 56 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccC
Confidence 89999999986432 2344444322 5789999999995
No 88
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.29 E-value=0.011 Score=68.80 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCc
Q 008343 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAY 422 (569)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~y 422 (569)
+.+++.+.+.+..++.-+|++.|..+.........+. . -..|..--+||++|.||.|..
T Consensus 296 eaa~~~v~~Lr~~GaDvIIaLsH~G~~~d~~~~~~En--~---~~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 296 EAVRDIIPTMRAAGADIVLVLSHSGIGDDQYEVGEEN--V---GYQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCcccccccccccc--h---hhHHhcCCCCCEEEECCCCCc
Confidence 4444544444445678899999988643211111111 1 112323358999999999984
No 89
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.20 E-value=0.0012 Score=61.08 Aligned_cols=50 Identities=18% Similarity=0.010 Sum_probs=31.3
Q ss_pred EEEEeCCCccccCccc-c----cchHHHHHHHHHHHHHcCCcEEEEcccc-Cccee
Q 008343 376 LVATWHAPWYSTYKAH-Y----REAECMRVAMEDLLYKYGVDVVFNGHVH-AYERS 425 (569)
Q Consensus 376 vIv~~H~P~y~s~~~~-~----~~~~~~r~~l~~ll~~~~VdlvlsGH~H-~yeR~ 425 (569)
-|++.|.|++...... . .....-...+.+++++.+..+.|+||.| -|||-
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~ 126 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE 126 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec
Confidence 4777788776542110 0 0001123456678888999999999999 56664
No 90
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.14 E-value=0.00075 Score=63.90 Aligned_cols=52 Identities=15% Similarity=0.429 Sum_probs=32.6
Q ss_pred HHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhccCCcEEecCCcccc
Q 008343 230 MISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 230 l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
+.+.+||.++++||+++... +. . ...+.... .+......+|+++++||||..
T Consensus 37 ~~~~~~d~lii~GDl~~~~~----~~----------------~-~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 37 IEEYGPERLIILGDLKHSFG----GL----------------S-RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HHhcCCCEEEEeCccccccc----cc----------------C-HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 34568999999999996321 10 0 11222211 233334678999999999975
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.08 E-value=0.01 Score=72.46 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=35.2
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCcce
Q 008343 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAYER 424 (569)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~yeR 424 (569)
+++.+.+.++.++..+|++.|...-........ .....+|.++ -+||++|.||.|....
T Consensus 223 ~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~-----en~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 223 ANKTIPEMKKGGADVIVALAHSGIESEYQSSGA-----EDSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCcCCCCCCCCc-----chHHHHHHHhCCCCcEEEeCCCccccc
Confidence 334444433356788999999887543211111 1223345544 4899999999998643
No 92
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.98 E-value=0.026 Score=65.44 Aligned_cols=48 Identities=29% Similarity=0.214 Sum_probs=28.8
Q ss_pred CCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHc-CCcEEEEccccCcce
Q 008343 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDVVFNGHVHAYER 424 (569)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~VdlvlsGH~H~yeR 424 (569)
.++..+|++.|..+-.... .. .+..+.. .+.+. +||++|.||+|..-.
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~--~~ena~~-~l~~v~gID~IlgGHsH~~~~ 291 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NV--GMENASY-YLTEVPGVDAVLMGHSHTEVK 291 (780)
T ss_pred cCCCEEEEEeccCcccccc---cc--cchhhhH-HHhcCCCCCEEEECCCCCccc
Confidence 4577899999987654211 10 0111111 13343 899999999998653
No 93
>PHA02239 putative protein phosphatase
Probab=96.89 E-value=0.002 Score=64.30 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=42.0
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHhC--CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhh
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMISN--RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQ 285 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~~--~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~ 285 (569)
+|++++||+|..... .+.++.+... ..|.++++||+++. |.. . .. ....+++
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDr------G~~------------s----~~---v~~~l~~ 55 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDR------GKR------------S----KD---VVNYIFD 55 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCC------CCC------------h----HH---HHHHHHH
Confidence 478999999965322 2344444332 25999999999953 320 0 11 1222222
Q ss_pred hhhccCCcEEecCCcccc
Q 008343 286 PVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 286 ~l~~~~P~~~v~GNHD~~ 303 (569)
.+....++++++||||..
T Consensus 56 ~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 56 LMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred HhhcCCCeEEEECCcHHH
Confidence 222345789999999963
No 94
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.66 E-value=0.0043 Score=61.45 Aligned_cols=70 Identities=13% Similarity=0.358 Sum_probs=45.5
Q ss_pred eEEEEEcccCCCCCh--------------HHHHHHHH----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008343 209 SRIAIVGDVGLTYNT--------------TSTVSHMI----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (569)
Q Consensus 209 ~rfavigD~g~~~~~--------------~~~~~~l~----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (569)
-+.++++|+|.+... .++++++. +.+||.+|++||+.+... .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~-----~--------------- 74 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFK-----K--------------- 74 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccC-----C---------------
Confidence 467899999987422 13344443 457999999999996321 0
Q ss_pred cchhHHHHHHHHhhhhhhccCCcEEecCCcccc
Q 008343 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
...|..+.++++.+ ..+++.++||||..
T Consensus 75 ---~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 75 ---GLEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred ---hHHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 01233444455544 46999999999964
No 95
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.63 E-value=0.056 Score=61.86 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCc
Q 008343 359 KWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAY 422 (569)
Q Consensus 359 ~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~y 422 (569)
+-+++.+.+.+..++.-+|++.|..+.........+ ..... +.+ -+||++|.||.|..
T Consensus 205 e~a~~~v~~Lk~~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 205 ETARKYVPEMKEKGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCcc
Confidence 334444444433567889999998864321100001 11112 233 47999999999985
No 96
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.62 E-value=0.042 Score=62.61 Aligned_cols=46 Identities=30% Similarity=0.255 Sum_probs=27.9
Q ss_pred CCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHH-cCCcEEEEccccCc
Q 008343 371 EVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYK-YGVDVVFNGHVHAY 422 (569)
Q Consensus 371 ~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~-~~VdlvlsGH~H~y 422 (569)
.++.-+|++.|.......... ..+. .. ..+.+ -+||++|+||.|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en---~~-~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAEN---SA-YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccch---HH-HHHhcCCCCCEEEcCCCCcc
Confidence 457789999998865421100 0111 11 12334 48999999999985
No 97
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.50 E-value=0.0039 Score=63.64 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=42.0
Q ss_pred eEEEEEcccCCCCChH-HHHHHHH-hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhh
Q 008343 209 SRIAIVGDVGLTYNTT-STVSHMI-SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQP 286 (569)
Q Consensus 209 ~rfavigD~g~~~~~~-~~~~~l~-~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~ 286 (569)
++++++||+|.....- .+++.+. ..+.|.++++||++.. |.. + ....+++..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr------Gp~------------------s--~~vl~~l~~ 54 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR------GPD------------------S--LEVLRFVKS 54 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC------CcC------------------H--HHHHHHHHh
Confidence 4789999999764332 2344432 2367999999999952 321 0 122233333
Q ss_pred hhccCCcEEecCCcccc
Q 008343 287 VLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 287 l~~~~P~~~v~GNHD~~ 303 (569)
+ ..+++++.||||..
T Consensus 55 l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 55 L--GDSAVTVLGNHDLH 69 (275)
T ss_pred c--CCCeEEEecChhHH
Confidence 3 45689999999974
No 98
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.44 E-value=0.0039 Score=62.11 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHh--C--------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMIS--N--------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~--~--------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (569)
+||+++||+|..... .++++.+.- . ..|.++++||++.. |.. -
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr------G~~--------------------s 54 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR------GPD--------------------S 54 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC------CCC--------------------H
Confidence 379999999986433 233444311 1 25899999999952 321 0
Q ss_pred HHHHHhhhhhhccCCcEEecCCcccc
Q 008343 278 DYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 278 d~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
....+++..+.....++++.||||..
T Consensus 55 ~evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 55 PEVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHHhhCCcEEEEECCcHHH
Confidence 12223333333234678999999973
No 99
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.074 Score=57.32 Aligned_cols=89 Identities=16% Similarity=0.318 Sum_probs=54.3
Q ss_pred CCeEEEEEcccCCCCCh------HHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhH
Q 008343 207 YPSRIAIVGDVGLTYNT------TSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQP 275 (569)
Q Consensus 207 ~~~rfavigD~g~~~~~------~~~~~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~ 275 (569)
..+++++++|.|.+... ...++.+. ..+..+++.+||++..-+.+. |. ..+-.+.+-| .
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYp-gq--------~~eL~i~di~-~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYP-GQ--------EEELVIADIY-E 293 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEeccccccccccc-Cc--------ccccccccch-H
Confidence 46889999999986432 12333332 124578999999996322111 11 1111122222 2
Q ss_pred HHHHHHHhhhhhhccCCcEEecCCcccccc
Q 008343 276 RWDYWGRYMQPVLSKVPIMVVEGNHEYEEQ 305 (569)
Q Consensus 276 ~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~ 305 (569)
+++.+.+++..+-..+-+++.|||||....
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCcccc
Confidence 455666777777778889999999998644
No 100
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.38 E-value=0.033 Score=56.22 Aligned_cols=191 Identities=14% Similarity=0.199 Sum_probs=94.4
Q ss_pred EEEEcccCCCCChH------HHHHHHHh-----------CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccch
Q 008343 211 IAIVGDVGLTYNTT------STVSHMIS-----------NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETY 273 (569)
Q Consensus 211 favigD~g~~~~~~------~~~~~l~~-----------~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y 273 (569)
+++++|+|.+.+.. ..++.|.. .+..-+|++||.+.......+......+ +........+
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~---~~~~~~~~~~ 78 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARY---LTKKSSAASV 78 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhc---cccccchhhH
Confidence 68899999875532 12223321 1344799999999643110000000000 0000001112
Q ss_pred hHHHHHHHHhhhhhhccCCcEEecCCccccccccc-hhh-HHhhhccCCCCCCCCCCCceeEEEEeCcEEEEEEeccc--
Q 008343 274 QPRWDYWGRYMQPVLSKVPIMVVEGNHEYEEQAEN-RTF-VAYTSRFAFPSKESGSLSKFYYSFNAGGIHFLMLAAYV-- 349 (569)
Q Consensus 274 ~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~~~~~~-~~~-~~y~~~f~~P~~~~~~~~~~yYsf~~G~v~fI~LDt~~-- 349 (569)
...+.+..++..+.+.+|+.+.|||||-....-. ..+ ..+..+-....+ .....+- |.|++++++|++.....
T Consensus 79 -~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~-~~~vtNP-~~~~i~g~~vLgtsGqni~ 155 (257)
T cd07387 79 -EAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYST-LNLVTNP-YEFSIDGVRVLGTSGQNVD 155 (257)
T ss_pred -HHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCC-cEEeCCC-eEEEECCEEEEEECCCCHH
Confidence 2355666778888889999999999998743211 011 011100000000 0111222 45999999999987652
Q ss_pred ---cCCCCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccc--cchHHHHHHHHHHHHHcCCcEEEEccccCcce
Q 008343 350 ---SFDKSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHY--REAECMRVAMEDLLYKYGVDVVFNGHVHAYER 424 (569)
Q Consensus 350 ---~~~~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~--~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR 424 (569)
.|...+.-++.|++.|+-- .-+ |.+...-..+ .+. .+++-+.-.+++++||.|.|+.
T Consensus 156 Di~ky~~~~~~l~~me~~L~wr--Hla---------PTaPDTL~~yP~~~~-------Dpfvi~~~PhVyf~Gnq~~f~t 217 (257)
T cd07387 156 DILKYSSLESRLDILERTLKWR--HIA---------PTAPDTLWCYPFTDR-------DPFILEECPHVYFAGNQPKFGT 217 (257)
T ss_pred HHHHhCCCCCHHHHHHHHHHhc--ccC---------CCCCCccccccCCCC-------CceeecCCCCEEEeCCCcceee
Confidence 1333444567777777641 111 2111100000 000 0122233478999999999877
Q ss_pred e
Q 008343 425 S 425 (569)
Q Consensus 425 ~ 425 (569)
.
T Consensus 218 ~ 218 (257)
T cd07387 218 K 218 (257)
T ss_pred e
Confidence 5
No 101
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.17 E-value=0.076 Score=52.90 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred cCCcEEecCCccccccccchhhHHh---hhccCCCCCCCCCC---CceeEEEEeCc--EEEEEEeccccCC---------
Q 008343 290 KVPIMVVEGNHEYEEQAENRTFVAY---TSRFAFPSKESGSL---SKFYYSFNAGG--IHFLMLAAYVSFD--------- 352 (569)
Q Consensus 290 ~~P~~~v~GNHD~~~~~~~~~~~~y---~~~f~~P~~~~~~~---~~~yYsf~~G~--v~fI~LDt~~~~~--------- 352 (569)
.+-++.+.+||++.... +.+... .+...++..+.+.. ...+..++.++ +.|+.+-+.....
T Consensus 77 G~d~~tlaNNH~fD~G~--~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~ 154 (239)
T cd07381 77 GFDVVSLANNHTLDYGE--EGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPG 154 (239)
T ss_pred CCCEEEcccccccccch--HHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcc
Confidence 55555555699997432 222211 12223433222111 13455567777 4555554421110
Q ss_pred -CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCccee
Q 008343 353 -KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERS 425 (569)
Q Consensus 353 -~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~ 425 (569)
....-.+-+++.+++.+++ +..+|+..|-..-... ........+...+.+.++|+|+.||.|..+-.
T Consensus 155 ~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 155 GVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred ccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCe
Confidence 0111134456666665433 7889999996442211 11112234445555679999999999987654
No 102
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.15 E-value=0.097 Score=52.19 Aligned_cols=190 Identities=18% Similarity=0.276 Sum_probs=89.2
Q ss_pred EEEcccCCCCChH---HHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhh
Q 008343 212 AIVGDVGLTYNTT---STVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPV 287 (569)
Q Consensus 212 avigD~g~~~~~~---~~~~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l 287 (569)
+++||.=....-. ..+..+.+ .++||||..|.++- .|.+.. +. .+.++++
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa------~G~Git---------------~~---~~~~L~~-- 54 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAA------GGFGIT---------------PK---IAEELFK-- 54 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTT------TTSS-----------------HH---HHHHHHH--
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccC------CCCCCC---------------HH---HHHHHHh--
Confidence 3577763322211 22334443 48999999999984 343210 11 2222221
Q ss_pred hccCCcEEecCCccccccccchhhHHhhhc---cCCCCCCC-CCCCceeEEEEeCcEEEEEEec--cccCCCCHHHHHHH
Q 008343 288 LSKVPIMVVEGNHEYEEQAENRTFVAYTSR---FAFPSKES-GSLSKFYYSFNAGGIHFLMLAA--YVSFDKSGDQYKWL 361 (569)
Q Consensus 288 ~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~---f~~P~~~~-~~~~~~yYsf~~G~v~fI~LDt--~~~~~~~~~Q~~WL 361 (569)
..+- ..+.|||=|... ....|... .--|.|-+ +..+.-|..|+.++.++-++|- +........-...+
T Consensus 55 -~GvD-viT~GNH~wdkk----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~ 128 (253)
T PF13277_consen 55 -AGVD-VITMGNHIWDKK----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAA 128 (253)
T ss_dssp -HT-S-EEE--TTTTSST----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHH
T ss_pred -cCCC-EEecCcccccCc----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHH
Confidence 1333 567899998632 22223222 22233321 3456788899999877766664 32222222333445
Q ss_pred HHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEE
Q 008343 362 EEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHI 441 (569)
Q Consensus 362 ~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyI 441 (569)
++.|++. +.+++.+||=+|.=-- ....+| -.+.+-+|.+|+.=|+|.-.--. .+-|+|+.||
T Consensus 129 d~~l~~l-~~~~~~iiVDFHAEaT-----------SEK~A~-g~~lDGrvsaV~GTHTHVqTaDe-----rILp~GTaYi 190 (253)
T PF13277_consen 129 DRLLEEL-KEETDIIIVDFHAEAT-----------SEKQAM-GWYLDGRVSAVVGTHTHVQTADE-----RILPGGTAYI 190 (253)
T ss_dssp HHHHHH------SEEEEEEE-S-H-----------HHHHHH-HHHHBTTBSEEEEESSSS-BS-------EE-TTS-EEE
T ss_pred HHHHHhc-cccCCEEEEEeecCcH-----------HHHHHH-HHHhCCcEEEEEeCCCCccCchh-----hccCCCCEEE
Confidence 5555553 2456778888885321 112222 34556689999999999743322 2247899999
Q ss_pred E-ECCCCccCC
Q 008343 442 T-VGDGGNREK 451 (569)
Q Consensus 442 v-~G~gG~~e~ 451 (569)
+ +|+-|...+
T Consensus 191 TDvGMtG~~ds 201 (253)
T PF13277_consen 191 TDVGMTGPYDS 201 (253)
T ss_dssp S---EBEESSS
T ss_pred ecCccccCccc
Confidence 8 577777544
No 103
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.15 E-value=0.0095 Score=59.80 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=24.4
Q ss_pred eEEEEEcccCCCCCh-HHHHHHHHhC---------CCCEEEEcCCccc
Q 008343 209 SRIAIVGDVGLTYNT-TSTVSHMISN---------RPDLILLVGDVTY 246 (569)
Q Consensus 209 ~rfavigD~g~~~~~-~~~~~~l~~~---------~pDfvl~~GDl~Y 246 (569)
+|++++||+|..... .++++++.-. .-|.++++||+++
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliD 48 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTD 48 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccC
Confidence 478999999976432 2233332111 2378999999996
No 104
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.99 E-value=0.016 Score=57.82 Aligned_cols=142 Identities=21% Similarity=0.353 Sum_probs=85.9
Q ss_pred hhhhhccCCcEEecCCccccccccc-------hhhHHhhhccC------CCCCCC--CCCCceeEEEEeCcEEEEEEecc
Q 008343 284 MQPVLSKVPIMVVEGNHEYEEQAEN-------RTFVAYTSRFA------FPSKES--GSLSKFYYSFNAGGIHFLMLAAY 348 (569)
Q Consensus 284 l~~l~~~~P~~~v~GNHD~~~~~~~-------~~~~~y~~~f~------~P~~~~--~~~~~~yYsf~~G~v~fI~LDt~ 348 (569)
..+....+|+|+-.||||.....-. +..+.|.+.+. .|.... -+....-||++.|++|.+-+-+.
T Consensus 164 vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf 243 (392)
T COG5555 164 VGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRF 243 (392)
T ss_pred CCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeee
Confidence 3444457999999999999743211 12233333221 111111 12334568999999999887654
Q ss_pred ccCC-C-CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccc----------------hHHHHHHHHHHHHHcC
Q 008343 349 VSFD-K-SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYRE----------------AECMRVAMEDLLYKYG 410 (569)
Q Consensus 349 ~~~~-~-~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~----------------~~~~r~~l~~ll~~~~ 410 (569)
..-. . ...-+-||+.+|........+ ++++.|.-+-.-....+.. ....|.+|...++-|+
T Consensus 244 ~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYN 322 (392)
T COG5555 244 IGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYN 322 (392)
T ss_pred ccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCce
Confidence 3211 1 123357999999876544445 7888887653321111110 1234778888899999
Q ss_pred CcEEEEccccCcceee
Q 008343 411 VDVVFNGHVHAYERSN 426 (569)
Q Consensus 411 VdlvlsGH~H~yeR~~ 426 (569)
|...+.||.|.+...+
T Consensus 323 vvg~fhGhkhd~~may 338 (392)
T COG5555 323 VVGTFHGHKHDFNMAY 338 (392)
T ss_pred eEEeccccccccceee
Confidence 9999999999875444
No 105
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=95.84 E-value=0.012 Score=58.12 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=26.1
Q ss_pred EEEEEcccCCCCChH-HHHHHHH-hCCCCEEEEcCCccc
Q 008343 210 RIAIVGDVGLTYNTT-STVSHMI-SNRPDLILLVGDVTY 246 (569)
Q Consensus 210 rfavigD~g~~~~~~-~~~~~l~-~~~pDfvl~~GDl~Y 246 (569)
|++++||+|...... ++++.+. ..+.|.++++||+++
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vd 54 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNID 54 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcC
Confidence 899999999764322 2333332 236799999999995
No 106
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=95.68 E-value=0.49 Score=46.79 Aligned_cols=193 Identities=21% Similarity=0.298 Sum_probs=102.5
Q ss_pred eEEEEEcccCCCCChHHHH---HHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhh
Q 008343 209 SRIAIVGDVGLTYNTTSTV---SHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYM 284 (569)
Q Consensus 209 ~rfavigD~g~~~~~~~~~---~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l 284 (569)
+|++++||+=....-..+. ..+.+ .++||||..|-++- +|.+. -|+.+..++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa------~G~Gi------------------t~k~y~~l~ 56 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAA------GGFGI------------------TEKIYKELL 56 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCcccc------CCcCC------------------CHHHHHHHH
Confidence 5899999985543333332 33333 47999999998873 34321 233333333
Q ss_pred hhhhccCCcEEecCCccccccccchhhHHhhhccCCCCCCC-CCCCceeEEEEeCcEEEEEEe--ccccCCC-CHHHHHH
Q 008343 285 QPVLSKVPIMVVEGNHEYEEQAENRTFVAYTSRFAFPSKES-GSLSKFYYSFNAGGIHFLMLA--AYVSFDK-SGDQYKW 360 (569)
Q Consensus 285 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-~~~~~~yYsf~~G~v~fI~LD--t~~~~~~-~~~Q~~W 360 (569)
+. .+- +++.|||=|....- -.|..-..++--|.+-+ +..+.-|+-|+..+..+.+++ ....... -..-.+=
T Consensus 57 ~~---G~d-viT~GNH~wd~~ei-~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~ 131 (266)
T COG1692 57 EA---GAD-VITLGNHTWDQKEI-LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKA 131 (266)
T ss_pred Hh---CCC-EEecccccccchHH-HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHH
Confidence 22 222 57889999863211 11111111222232211 234456666777665554444 3322211 1222334
Q ss_pred HHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeE
Q 008343 361 LEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVH 440 (569)
Q Consensus 361 L~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vy 440 (569)
+++.|.+.+ .+++-+||-+|.=--+. .++| -++.+-.|.+|+.=|+|.-..-.++ -+.|+.|
T Consensus 132 ~d~l~~~~~-~~~~~iiVDFHAEtTSE-----------K~a~-g~yldGrvsavvGTHTHV~TaD~rI-----L~~GTay 193 (266)
T COG1692 132 ADKLLDEIK-LGTDLIIVDFHAETTSE-----------KNAF-GWYLDGRVSAVVGTHTHVPTADERI-----LPKGTAY 193 (266)
T ss_pred HHHHHHhCc-cCCceEEEEccccchhh-----------hhhh-heEEcCeEEEEEeccCcccccccee-----cCCCcEE
Confidence 566666644 34567899888643221 1111 1233447889999999975443322 4679999
Q ss_pred EE-ECCCCc
Q 008343 441 IT-VGDGGN 448 (569)
Q Consensus 441 Iv-~G~gG~ 448 (569)
|+ .|+-|.
T Consensus 194 iTDvGMtG~ 202 (266)
T COG1692 194 ITDVGMTGP 202 (266)
T ss_pred EecCccccc
Confidence 88 466555
No 107
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=95.56 E-value=0.027 Score=45.56 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEcccCCCCceEEEeEEEEeeeecccCCccccccCeE
Q 008343 85 EPEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGII 164 (569)
Q Consensus 85 ~P~qi~ls~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~p~~g~~~~~~~~~ 164 (569)
.|+.+++.-. .++++.|+|.... ..+.. ...-.|+|....+..... .... ++-.
T Consensus 2 ~P~~l~v~~~-~~~sv~v~W~~~~-~~~~~-------~~~y~v~~~~~~~~~~~~----~~~~-------------~~~~ 55 (85)
T PF00041_consen 2 APENLSVSNI-SPTSVTVSWKPPS-SGNGP-------ITGYRVEYRSVNSTSDWQ----EVTV-------------PGNE 55 (85)
T ss_dssp SSEEEEEEEE-CSSEEEEEEEESS-STSSS-------ESEEEEEEEETTSSSEEE----EEEE-------------ETTS
T ss_pred cCcCeEEEEC-CCCEEEEEEECCC-CCCCC-------eeEEEEEEEecccceeee----eeee-------------eeee
Confidence 4777877765 3799999999864 11111 123456665554433110 0000 1112
Q ss_pred EEEEeCCCCCCCEEEEEEecCC
Q 008343 165 HHVRLTGLKPDTLYHYQCGDPS 186 (569)
Q Consensus 165 h~v~l~gL~P~T~Y~Yrvg~~~ 186 (569)
+.+.|+||+|+|.|.++|..-+
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEe
Confidence 3778899999999999997544
No 108
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.56 E-value=0.31 Score=48.64 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=37.4
Q ss_pred HHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCcceee
Q 008343 360 WLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAYERSN 426 (569)
Q Consensus 360 WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~yeR~~ 426 (569)
-+++.+++.+. ++..+|++.|--.-.... .... ...+...+.+.++|+|+.||.|..+...
T Consensus 161 ~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~----p~~~-~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 161 KILADIARARK-KADVVIVSLHWGVEYQYE----PTDE-QRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHHhc-cCCEEEEEecCccccCCC----CCHH-HHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 35555555443 478899999976532111 0112 2334444445799999999999887653
No 109
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.41 E-value=0.019 Score=57.99 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=39.6
Q ss_pred EEEcccCCCCCh-HHHHHHHHh-CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHHHhhhhhhc
Q 008343 212 AIVGDVGLTYNT-TSTVSHMIS-NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWGRYMQPVLS 289 (569)
Q Consensus 212 avigD~g~~~~~-~~~~~~l~~-~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~~~l~~l~~ 289 (569)
.++||+|..... .++++++.. .+.|.++++||++.. |.. . .+..+++..+
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR------Gp~------------------s--~evl~~l~~l-- 53 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR------GPD------------------S--LETLRFVKSL-- 53 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC------CcC------------------H--HHHHHHHHhc--
Confidence 689999976432 234444432 257999999999952 321 0 1223333333
Q ss_pred cCCcEEecCCcccc
Q 008343 290 KVPIMVVEGNHEYE 303 (569)
Q Consensus 290 ~~P~~~v~GNHD~~ 303 (569)
+..+..+.||||..
T Consensus 54 ~~~v~~VlGNHD~~ 67 (257)
T cd07422 54 GDSAKTVLGNHDLH 67 (257)
T ss_pred CCCeEEEcCCchHH
Confidence 24678999999974
No 110
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.28 E-value=0.024 Score=56.05 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=39.0
Q ss_pred EEEEcccCCCCCh-HHHHHHHHhC--------CCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHHHHHH
Q 008343 211 IAIVGDVGLTYNT-TSTVSHMISN--------RPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRWDYWG 281 (569)
Q Consensus 211 favigD~g~~~~~-~~~~~~l~~~--------~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~wd~~~ 281 (569)
+.++||.|..... .+.++++... ..|.++++||++.. |..+ ....
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDR------Gp~S--------------------~~vl 54 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDR------GPEI--------------------RELL 54 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCC------CCCH--------------------HHHH
Confidence 3689999976433 2334443211 35799999999953 3210 1122
Q ss_pred HhhhhhhccCCcEEecCCcccc
Q 008343 282 RYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 282 ~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
+.+..+...-.++.+.||||..
T Consensus 55 ~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 55 EIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred HHHHHhhcCCCEEEEEccCcHH
Confidence 3333333334688999999963
No 111
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.19 E-value=0.02 Score=56.11 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=23.4
Q ss_pred EEEcccCCCCCh-HHHHHHHHhCCCCEEEEcCCccc
Q 008343 212 AIVGDVGLTYNT-TSTVSHMISNRPDLILLVGDVTY 246 (569)
Q Consensus 212 avigD~g~~~~~-~~~~~~l~~~~pDfvl~~GDl~Y 246 (569)
.++||+|..... .++++.+.....|.+|++||++.
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vd 36 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVD 36 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeC
Confidence 378999965322 12333333346899999999995
No 112
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=95.13 E-value=0.026 Score=57.40 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=26.2
Q ss_pred EEEEEcccCCCCCh-HHHHHHHH-hCCCCEEEEcCCccc
Q 008343 210 RIAIVGDVGLTYNT-TSTVSHMI-SNRPDLILLVGDVTY 246 (569)
Q Consensus 210 rfavigD~g~~~~~-~~~~~~l~-~~~pDfvl~~GDl~Y 246 (569)
++.+|||+|..... ...++++. ....|-++++||++.
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVd 40 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVA 40 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccC
Confidence 57899999976433 34455554 235689999999995
No 113
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.11 E-value=0.034 Score=56.85 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=25.6
Q ss_pred EEEEEcccCCCCCh-HHHHHHHHhC------CCCEEEEcCCccc
Q 008343 210 RIAIVGDVGLTYNT-TSTVSHMISN------RPDLILLVGDVTY 246 (569)
Q Consensus 210 rfavigD~g~~~~~-~~~~~~l~~~------~pDfvl~~GDl~Y 246 (569)
+++++||.|..... ..+++.+.+. ..+.+|++||+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD 46 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCD 46 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC
Confidence 78999999977543 2344444321 2468999999995
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.08 E-value=0.048 Score=53.89 Aligned_cols=73 Identities=16% Similarity=0.422 Sum_probs=47.3
Q ss_pred eEEEEEcccCCCCChH-----------------HHHHH-HHhCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCc
Q 008343 209 SRIAIVGDVGLTYNTT-----------------STVSH-MISNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIH 270 (569)
Q Consensus 209 ~rfavigD~g~~~~~~-----------------~~~~~-l~~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~ 270 (569)
-+.++++|+|.+.... ..+++ +.+.+|+-+|.+||+-.+- +.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~-----~~--------------- 79 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEF-----GK--------------- 79 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccccc-----Cc---------------
Confidence 4789999999885421 12332 3356999999999998631 11
Q ss_pred cchhHHHHHHHHhhhhhhccCCcEEecCCcccc
Q 008343 271 ETYQPRWDYWGRYMQPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 271 e~Y~~~wd~~~~~l~~l~~~~P~~~v~GNHD~~ 303 (569)
.....|+....+++.+... -++++.||||-+
T Consensus 80 -~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 -SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred -cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0123455555555554333 599999999975
No 115
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.09 E-value=0.99 Score=45.29 Aligned_cols=131 Identities=11% Similarity=0.171 Sum_probs=72.4
Q ss_pred cCCcEEecCCccccccccc-hhhHHhhhccCCCCCCCCC---CCceeEEEEeCcEEEEEEec--ccc-C--C--------
Q 008343 290 KVPIMVVEGNHEYEEQAEN-RTFVAYTSRFAFPSKESGS---LSKFYYSFNAGGIHFLMLAA--YVS-F--D-------- 352 (569)
Q Consensus 290 ~~P~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~~~~~~---~~~~yYsf~~G~v~fI~LDt--~~~-~--~-------- 352 (569)
.+-++.+.-||.+.....+ ..-....+...++..+.+. .......++.+++++-+|.- ... . .
T Consensus 75 G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~ 154 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGF 154 (250)
T ss_pred CCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccccc
Confidence 5667777789988633211 1111222233333322111 11234556777766555542 110 0 0
Q ss_pred ----------CCHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccCc
Q 008343 353 ----------KSGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHAY 422 (569)
Q Consensus 353 ----------~~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~y 422 (569)
....+.+.+++++++++ ++..++||+.|--.-... ...+. ..++...+-+.++|+|+.+|.|..
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~----~p~~~-q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 155 SYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYEN----YPTPE-QRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred cccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCC----CCCHH-HHHHHHHHHHcCCCEEEeCCCCcc
Confidence 01234588888888876 568899999997432111 11222 334555556689999999999997
Q ss_pred ceee
Q 008343 423 ERSN 426 (569)
Q Consensus 423 eR~~ 426 (569)
|-..
T Consensus 229 q~~E 232 (250)
T PF09587_consen 229 QPVE 232 (250)
T ss_pred cceE
Confidence 7764
No 116
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.44 Score=52.64 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHhccccCCCCEEEEEeCCCccccCcccccchHHHHHHHHHHHHHc-CCcE-EEEccccCcce
Q 008343 354 SGDQYKWLEEDLANVEREVTPWLVATWHAPWYSTYKAHYREAECMRVAMEDLLYKY-GVDV-VFNGHVHAYER 424 (569)
Q Consensus 354 ~~~Q~~WL~~~L~~~~~~~~~wvIv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~-~Vdl-vlsGH~H~yeR 424 (569)
.-.|.+|-.+.++. .+.+-+|++.|.|.-.. .+. ...+..+...+ ++++ ||.||.|....
T Consensus 210 ei~~~~~~~~m~~~---~~idlii~lgH~~~~~~-----~e~---~~~~~~ir~~~p~t~IqviGGHshird~ 271 (602)
T KOG4419|consen 210 EITQSEWEQDMVNT---TDIDLIIALGHSPVRDD-----DEW---KSLHAEIRKVHPNTPIQVIGGHSHIRDF 271 (602)
T ss_pred HHhccchHHHHhhc---cCccEEEEecccccccc-----hhh---hhHHHHHhhhCCCCceEEECchhhhhhh
Confidence 35677888888777 44566899999997432 111 11344444444 6788 99999997443
No 117
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=92.41 E-value=0.31 Score=53.08 Aligned_cols=42 Identities=33% Similarity=0.409 Sum_probs=32.2
Q ss_pred CCeEEEEEcccCCCCC---------hHHHHHHH----HhCCCCEEEEcCCccccc
Q 008343 207 YPSRIAIVGDVGLTYN---------TTSTVSHM----ISNRPDLILLVGDVTYAN 248 (569)
Q Consensus 207 ~~~rfavigD~g~~~~---------~~~~~~~l----~~~~pDfvl~~GDl~Y~d 248 (569)
..+||++..|.|.++. +..++++| .+++.||||..||+..++
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 3699999999998863 23344444 356899999999999865
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=91.82 E-value=0.24 Score=51.33 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+++.++++++++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecccc
Confidence 46778899999999999999843
No 119
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=90.64 E-value=0.45 Score=48.49 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 008343 399 RVAMEDLLYKYGVDVVFNGHV 419 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~ 419 (569)
.+++++.++++++++++-||.
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCc
Confidence 467888999999999999997
No 120
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=90.46 E-value=0.39 Score=50.11 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+.+.+++++.++++=||.-.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 56778899999999999999853
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=89.75 E-value=0.4 Score=49.25 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+++++.++++++++++=||.-.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 56788899999999999999854
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=88.82 E-value=0.5 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+++.+++++.++++=||.-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46788899999999999999854
No 123
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=88.72 E-value=0.55 Score=48.66 Aligned_cols=23 Identities=4% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+++.+++++.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46788899999999999999853
No 124
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=88.27 E-value=1.5 Score=52.25 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=26.0
Q ss_pred EeCCCCCCCEEEEEEecC---CCCCccceeEEEcCCC
Q 008343 168 RLTGLKPDTLYHYQCGDP---SIPAMSGTYCFRTMPD 201 (569)
Q Consensus 168 ~l~gL~P~T~Y~Yrvg~~---~~~~~S~~~~F~T~P~ 201 (569)
.+++|+|+|.|.+||... +.+..|++.++.|+-.
T Consensus 677 l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 677 LFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred HhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 357899999999999543 2346888999998743
No 125
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=87.95 E-value=2.4 Score=48.62 Aligned_cols=37 Identities=35% Similarity=0.601 Sum_probs=31.0
Q ss_pred EEEEeCCCCCCCEEEEEEecCC---CCCccceeEEEcCCC
Q 008343 165 HHVRLTGLKPDTLYHYQCGDPS---IPAMSGTYCFRTMPD 201 (569)
Q Consensus 165 h~v~l~gL~P~T~Y~Yrvg~~~---~~~~S~~~~F~T~P~ 201 (569)
.+|+|+||+|+|+|-+||.... -+.+|....|.|.+.
T Consensus 498 ~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 498 TTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 4789999999999999996433 347899999999986
No 126
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=4.4 Score=37.14 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcEEEEccccCcceeeccccCccCCCCCeEEEECCC
Q 008343 400 VAMEDLLYKYGVDVVFNGHVHAYERSNRVYNYTLDPCGPVHITVGDG 446 (569)
Q Consensus 400 ~~l~~ll~~~~VdlvlsGH~H~yeR~~~v~n~~~~~~g~vyIv~G~g 446 (569)
+.|.-|-++.+||+.+.||+|.++... -+|-.||--|++
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Aye--------~eg~ffvnPGSa 135 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAYE--------HEGKFFVNPGSA 135 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEEE--------eCCcEEeCCCcc
Confidence 455566778899999999999998873 457777766665
No 127
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=87.74 E-value=0.87 Score=48.47 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCcEEEEcccc
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVH 420 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H 420 (569)
.+.++..|+++++++++=||.=
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe~ 294 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHEG 294 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCCC
Confidence 4678889999999999999983
No 128
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=87.61 E-value=0.69 Score=48.25 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+++.+++++.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 57788899999999999999854
No 129
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=87.08 E-value=0.57 Score=48.33 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+++.+++++.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 46788899999999999999843
No 130
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=84.33 E-value=8.7 Score=30.03 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=18.9
Q ss_pred EEEEEeCCCCCCCEEEEEEecCC
Q 008343 164 IHHVRLTGLKPDTLYHYQCGDPS 186 (569)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~~ 186 (569)
..++.+.+|.|++.|.+||..-.
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~~ 78 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAVN 78 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEEC
Confidence 35778899999999999996543
No 131
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=83.09 E-value=2 Score=44.74 Aligned_cols=21 Identities=10% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCcEEEEccc
Q 008343 399 RVAMEDLLYKYGVDVVFNGHV 419 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~ 419 (569)
.+++++.++++++++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467788899999999999997
No 132
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=82.58 E-value=2.2 Score=44.56 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+.+.+++++.++++-||.-.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46778899999999999999853
No 133
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=78.30 E-value=1.2 Score=43.31 Aligned_cols=82 Identities=12% Similarity=0.306 Sum_probs=41.9
Q ss_pred EEEEcccCCCCCh--HHHHHHHH-----hCCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH---HHH
Q 008343 211 IAIVGDVGLTYNT--TSTVSHMI-----SNRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW---DYW 280 (569)
Q Consensus 211 favigD~g~~~~~--~~~~~~l~-----~~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w---d~~ 280 (569)
|++++|.+...+. .+.+..+. +.+|+.+|++|+++.......... .....+.... ...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSG------------SVPDSYSFEEDFLKEL 68 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---------------HHCCHHHHHHHHC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccc------------cccccccccHHHHHHH
Confidence 6788998887432 23333333 457999999999996532110000 0000111111 122
Q ss_pred HHhhhhhhccCCcEEecCCccccc
Q 008343 281 GRYMQPVLSKVPIMVVEGNHEYEE 304 (569)
Q Consensus 281 ~~~l~~l~~~~P~~~v~GNHD~~~ 304 (569)
...+..+..++.++.+||+||...
T Consensus 69 ~~~~~~i~~~~~vvlvPg~~D~~~ 92 (209)
T PF04042_consen 69 DSFLESILPSTQVVLVPGPNDPTS 92 (209)
T ss_dssp HHHHCCCHCCSEEEEE--TTCTT-
T ss_pred HHHHhhcccccEEEEeCCCccccc
Confidence 344556667899999999999864
No 134
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=77.83 E-value=35 Score=34.70 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=22.9
Q ss_pred CeEEEEEcccCCCCChHHHHHHHH-hCCCCEEEEcCCccc
Q 008343 208 PSRIAIVGDVGLTYNTTSTVSHMI-SNRPDLILLVGDVTY 246 (569)
Q Consensus 208 ~~rfavigD~g~~~~~~~~~~~l~-~~~pDfvl~~GDl~Y 246 (569)
-.||+.++|.|.-... +. -..-|+++++||...
T Consensus 61 ~~r~VcisdtH~~~~~------i~~~p~gDvlihagdfT~ 94 (305)
T KOG3947|consen 61 YARFVCISDTHELTFD------INDIPDGDVLIHAGDFTN 94 (305)
T ss_pred ceEEEEecCcccccCc------cccCCCCceEEeccCCcc
Confidence 4699999999854211 11 124589999999983
No 135
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=77.44 E-value=15 Score=27.64 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.2
Q ss_pred EEEEEeCCCCCCCEEEEEEecCC
Q 008343 164 IHHVRLTGLKPDTLYHYQCGDPS 186 (569)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~~ 186 (569)
-+...+.+|+|++.|.++|....
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEEc
Confidence 46788999999999999986543
No 136
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=74.26 E-value=11 Score=43.80 Aligned_cols=122 Identities=21% Similarity=0.168 Sum_probs=72.4
Q ss_pred CCCCeEEEEecC-CCCceEEEEEcCcccccCCCCCCCCCCCccEEEEcccCCCCceEEE-----eEE--EEeeeecccCC
Q 008343 84 FEPEQISVSLSS-AHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKAT-----GRS--LVYSQLYPFLG 155 (569)
Q Consensus 84 ~~P~qi~ls~~~-~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~-----g~~--~~y~~~~p~~g 155 (569)
-++.-++|+... +-+++.++|....+. +.-+ -..-.+.|...+.+....-. |.. .+....+| ++
T Consensus 487 Ce~~~l~~~~~~~~~dsi~lrW~~~~~~--d~r~-----llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~-~~ 558 (1025)
T KOG4258|consen 487 CEDLVLQFSSTVTSADSILLRWERYQPP--DMRD-----LLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPP-DL 558 (1025)
T ss_pred cccceeeeeeEEeecceeEEEecccCCc--chhh-----hheeeEeeccCCccccceecCccccccCcceEEeccCC-cC
Confidence 456677777774 358999999987653 1000 12246788887744332222 211 11222222 22
Q ss_pred ccccccCeEE-EEEeCCCCCCCEEEEEEecC-------CCCCccceeEEEcCCCCCCCCCCeEEEEEcccC
Q 008343 156 LQNYTSGIIH-HVRLTGLKPDTLYHYQCGDP-------SIPAMSGTYCFRTMPDSSSTSYPSRIAIVGDVG 218 (569)
Q Consensus 156 ~~~~~~~~~h-~v~l~gL~P~T~Y~Yrvg~~-------~~~~~S~~~~F~T~P~~g~~~~~~rfavigD~g 218 (569)
..+ ..+| ...|.||+|.|.|.|-|..- ...+.|++..++|.|...+. |+.++..++..
T Consensus 559 ~p~---~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp--Pl~~ls~snsS 624 (1025)
T KOG4258|consen 559 IPN---DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP--PLDVLSKSNSS 624 (1025)
T ss_pred CCc---cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC--cchhhhccCcc
Confidence 222 1234 67899999999999987533 11278999999999876543 66666666543
No 137
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=71.66 E-value=21 Score=42.75 Aligned_cols=92 Identities=22% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCeEEEEecCCCCceEEEEEcCcccccCCCCCCCCCCCccEEEEcccCCCCceEEEeEEEEeeeecccCCccccccCeEE
Q 008343 86 PEQISVSLSSAHDSVWISWITGEFQIGNNLKPLDPKSVVSVVRYGTRRSQLNRKATGRSLVYSQLYPFLGLQNYTSGIIH 165 (569)
Q Consensus 86 P~qi~ls~~~~p~s~~I~W~T~~~~~g~~~~~~~p~~~~~~V~yg~~~~~~~~~~~g~~~~y~~~~p~~g~~~~~~~~~h 165 (569)
|..+++ .+.+.++|.|+|.......|- -..=.|+|....++. +..... +..+..-
T Consensus 823 p~~~~~-~~~s~s~~~v~W~~~~~~nG~--------l~gY~v~Y~~~~~~~-----~~~~~~-----------~i~~~~~ 877 (1051)
T KOG3513|consen 823 PTKLSA-KPLSSSEVNLSWKPPLWDNGK--------LTGYEVKYWKINEKE-----GSLSRV-----------QIAGNRT 877 (1051)
T ss_pred Ccccee-ecccCceEEEEecCcCccCCc--------cceeEEEEEEcCCCc-----ccccce-----------eecCCcc
Confidence 444433 233468999999654332221 122467887766543 111110 0123345
Q ss_pred EEEeCCCCCCCEEEEEEecCCC---CCccceeEEEcCCCC
Q 008343 166 HVRLTGLKPDTLYHYQCGDPSI---PAMSGTYCFRTMPDS 202 (569)
Q Consensus 166 ~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~P~~ 202 (569)
.++|+||+|+|.|++.+...+. +..|...+-+|.+.+
T Consensus 878 ~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 878 SWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred eEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 6789999999999999865442 233444444555443
No 138
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=67.94 E-value=42 Score=40.71 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=29.1
Q ss_pred EEEEEeCCCCCCCEEEEEEecCCC---CCccceeEEEcCCC
Q 008343 164 IHHVRLTGLKPDTLYHYQCGDPSI---PAMSGTYCFRTMPD 201 (569)
Q Consensus 164 ~h~v~l~gL~P~T~Y~Yrvg~~~~---~~~S~~~~F~T~P~ 201 (569)
.++.+|.||+|.|.|.|||-..+. +.-|+..+|+|+-.
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd 613 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSD 613 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccC
Confidence 367789999999999999965442 35667788888743
No 139
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=59.08 E-value=58 Score=33.49 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=50.0
Q ss_pred CeEEEEEcccCCCCCh-HHHHHHHHh---------CCCCEEEEcCCcccccccccCCCCCccccccCCCCCCccchhHHH
Q 008343 208 PSRIAIVGDVGLTYNT-TSTVSHMIS---------NRPDLILLVGDVTYANLYLTNGTGSDCYACSFANSPIHETYQPRW 277 (569)
Q Consensus 208 ~~rfavigD~g~~~~~-~~~~~~l~~---------~~pDfvl~~GDl~Y~d~~~~~G~~~~~~~~~~~~~~~~e~Y~~~w 277 (569)
..+|+++||.++.... -+.++++.+ ..|-.+|+.|+++..-.. .+. ...+.|+...
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~~------------~~~~~yk~~F 92 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YNR------------NFHKVYIKGF 92 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CCC------------CchHHHHHHH
Confidence 4699999999987321 122222221 137889999999854211 010 1223466666
Q ss_pred HHHHHh-h---hhhhccCCcEEecCCcccc
Q 008343 278 DYWGRY-M---QPVLSKVPIMVVEGNHEYE 303 (569)
Q Consensus 278 d~~~~~-l---~~l~~~~P~~~v~GNHD~~ 303 (569)
+.+... + ..+..+.-++.|||-+|-.
T Consensus 93 d~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 93 EKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 666542 2 3456788899999999974
No 140
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=34.93 E-value=34 Score=35.94 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
...+++++.+.++|+++-||.=.
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv 255 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVV 255 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccc
Confidence 46778889999999999998643
No 141
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=34.26 E-value=45 Score=30.95 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=21.2
Q ss_pred EEeCCCCCCCEEEEEEec--CCCCCccceeEEEcCCC
Q 008343 167 VRLTGLKPDTLYHYQCGD--PSIPAMSGTYCFRTMPD 201 (569)
Q Consensus 167 v~l~gL~P~T~Y~Yrvg~--~~~~~~S~~~~F~T~P~ 201 (569)
=++++|.|||+||.+.-. +....-|.+..-.|.|.
T Consensus 104 YqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 104 YQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred EEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 367999999999876544 33223334444445544
No 142
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=32.38 E-value=41 Score=33.87 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred EEEEcccCCCCChHHHHHHH--HhCCCCE-EEEcCCccc
Q 008343 211 IAIVGDVGLTYNTTSTVSHM--ISNRPDL-ILLVGDVTY 246 (569)
Q Consensus 211 favigD~g~~~~~~~~~~~l--~~~~pDf-vl~~GDl~Y 246 (569)
+.+.||.|.. ....++-+ -...||. .++.||.+.
T Consensus 62 vtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvd 98 (319)
T KOG0371|consen 62 VTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVD 98 (319)
T ss_pred eEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecc
Confidence 6789999865 33334333 2345664 678999995
No 143
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=32.11 E-value=40 Score=28.46 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.1
Q ss_pred EEEeCCCCCCCEEEEEEec
Q 008343 166 HVRLTGLKPDTLYHYQCGD 184 (569)
Q Consensus 166 ~v~l~gL~P~T~Y~Yrvg~ 184 (569)
.+.|.+|+|+|.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 4679999999999999986
No 144
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=31.10 E-value=77 Score=31.79 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred EEEEcccCCCCChHHHHHHHH--hCCC-CEEEEcCCcccc
Q 008343 211 IAIVGDVGLTYNTTSTVSHMI--SNRP-DLILLVGDVTYA 247 (569)
Q Consensus 211 favigD~g~~~~~~~~~~~l~--~~~p-Dfvl~~GDl~Y~ 247 (569)
+.+.||+|.. ....++-.. ..-| .=-|++||+++.
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVDR 82 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVDR 82 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhcc
Confidence 4589999965 233333222 1122 346889999963
No 145
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.45 E-value=69 Score=27.93 Aligned_cols=23 Identities=43% Similarity=0.788 Sum_probs=20.2
Q ss_pred CeEEEEEeCCCCCCCEEEEEEec
Q 008343 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (569)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~ 184 (569)
+-++++.+.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999973
No 146
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.77 E-value=70 Score=27.13 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred CeEEEEEeCCCCCCCEEEEEEec
Q 008343 162 GIIHHVRLTGLKPDTLYHYQCGD 184 (569)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~ 184 (569)
+-+.++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999964
No 147
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.73 E-value=76 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCCCCEEEEEEe
Q 008343 163 IIHHVRLTGLKPDTLYHYQCG 183 (569)
Q Consensus 163 ~~h~v~l~gL~P~T~Y~Yrvg 183 (569)
-++++.+.++ +|+.|.|++.
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~ 59 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLD 59 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEEC
Confidence 4578899999 9999999997
No 148
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.03 E-value=94 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCCCEEEEEEecC
Q 008343 162 GIIHHVRLTGLKPDTLYHYQCGDP 185 (569)
Q Consensus 162 ~~~h~v~l~gL~P~T~Y~Yrvg~~ 185 (569)
+-++++.+.++.+|+.|.||+...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 457889999999999999999744
No 149
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.98 E-value=1.1e+02 Score=30.56 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=19.8
Q ss_pred EEEeCCCccccCcccccchHHHHHHHHHHHHHcCCcEEEEccccC
Q 008343 377 VATWHAPWYSTYKAHYREAECMRVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 377 Iv~~H~P~y~s~~~~~~~~~~~r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
+++.|||++-.............+.+. .+.++++ .+++-|+..
T Consensus 56 lIItHHP~~f~~~~~~~~~~~~~~~~~-~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSLTGDDYKGKIIE-KLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp EEEESS-SSSSTSSHCHCHSHHHHHHH-HHHHTT--EEEEESHHH
T ss_pred EEEEcCchhhcCCccccccchhhHHHH-HHHHCCC-EEEEecccc
Confidence 556788875532221111112233343 4444777 557777765
No 150
>PRK10301 hypothetical protein; Provisional
Probab=21.72 E-value=5.7e+02 Score=22.66 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=23.7
Q ss_pred eEEEEEeC-CCCCCC-EEEEEEecCCCCCccceeEEE
Q 008343 163 IIHHVRLT-GLKPDT-LYHYQCGDPSIPAMSGTYCFR 197 (569)
Q Consensus 163 ~~h~v~l~-gL~P~T-~Y~Yrvg~~~~~~~S~~~~F~ 197 (569)
....+.+. .|.||+ +-.||+-..++-..+..|+|+
T Consensus 86 ~~~~v~l~~~L~~G~YtV~Wrvvs~DGH~~~G~~~F~ 122 (124)
T PRK10301 86 KQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFS 122 (124)
T ss_pred cEEEEECCCCCCCccEEEEEEEEecCCCccCCeEEEE
Confidence 34567775 689985 247788766655677777775
No 151
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=20.50 E-value=5.2e+02 Score=21.78 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCcEEEEccccC
Q 008343 399 RVAMEDLLYKYGVDVVFNGHVHA 421 (569)
Q Consensus 399 r~~l~~ll~~~~VdlvlsGH~H~ 421 (569)
.+.+.+..+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 46677788899999888877654
No 152
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=20.06 E-value=1.1e+02 Score=31.57 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.4
Q ss_pred EEeCCCCCCCEEEEEEecCC
Q 008343 167 VRLTGLKPDTLYHYQCGDPS 186 (569)
Q Consensus 167 v~l~gL~P~T~Y~Yrvg~~~ 186 (569)
.+|.||+||+.|-..|....
T Consensus 262 etI~~L~PG~~Yl~dV~~~~ 281 (300)
T PF10179_consen 262 ETIKGLKPGTTYLFDVYVNG 281 (300)
T ss_pred eecccCCCCcEEEEEEEEec
Confidence 37999999999999998765
Done!