Query 008345
Match_columns 569
No_of_seqs 411 out of 3060
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337 ATP-dependent RNA heli 100.0 2.9E-99 6E-104 745.1 31.2 508 11-552 9-517 (529)
2 KOG0330 ATP-dependent RNA heli 100.0 2.2E-79 4.9E-84 599.4 33.9 373 20-396 58-430 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 1.1E-75 2.5E-80 589.0 32.6 359 23-383 181-543 (691)
4 KOG0331 ATP-dependent RNA heli 100.0 1.9E-74 4.1E-79 600.7 36.0 371 24-395 92-470 (519)
5 KOG0342 ATP-dependent RNA heli 100.0 1.6E-73 3.4E-78 574.0 34.2 422 22-479 81-508 (543)
6 COG0513 SrmB Superfamily II DN 100.0 3.3E-72 7.1E-77 607.0 41.7 365 23-390 29-398 (513)
7 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-72 2.3E-77 572.2 33.6 357 23-382 69-432 (758)
8 KOG0345 ATP-dependent RNA heli 100.0 1.7E-72 3.7E-77 562.5 34.5 357 22-380 3-371 (567)
9 KOG0340 ATP-dependent RNA heli 100.0 7.4E-72 1.6E-76 540.7 30.6 372 20-393 4-381 (442)
10 KOG0328 Predicted ATP-dependen 100.0 6E-70 1.3E-74 512.2 27.6 373 17-394 21-394 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 4E-69 8.7E-74 543.9 32.6 363 22-387 244-638 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 5.7E-66 1.2E-70 550.9 42.8 368 22-392 7-381 (423)
13 KOG0326 ATP-dependent RNA heli 100.0 1.6E-67 3.4E-72 503.4 20.6 370 20-395 82-451 (459)
14 PTZ00110 helicase; Provisional 100.0 5.9E-65 1.3E-69 555.4 43.3 369 22-391 129-502 (545)
15 PRK11634 ATP-dependent RNA hel 100.0 9.8E-64 2.1E-68 550.5 51.7 364 23-391 6-370 (629)
16 KOG0348 ATP-dependent RNA heli 100.0 1.5E-65 3.2E-70 518.8 31.9 446 20-480 133-648 (708)
17 PRK04537 ATP-dependent RNA hel 100.0 3.2E-64 7E-69 551.4 43.8 371 23-395 9-386 (572)
18 PRK11776 ATP-dependent RNA hel 100.0 3.5E-64 7.7E-69 542.7 43.4 364 22-391 3-367 (460)
19 PRK10590 ATP-dependent RNA hel 100.0 6.4E-64 1.4E-68 539.0 43.0 363 24-389 2-368 (456)
20 PLN00206 DEAD-box ATP-dependen 100.0 2.4E-63 5.2E-68 541.1 42.5 369 21-391 119-493 (518)
21 KOG0341 DEAD-box protein abstr 100.0 9.8E-67 2.1E-71 508.8 13.9 363 20-386 167-542 (610)
22 KOG0336 ATP-dependent RNA heli 100.0 2.3E-64 4.9E-69 495.2 25.6 373 19-394 215-593 (629)
23 PRK11192 ATP-dependent RNA hel 100.0 5.4E-62 1.2E-66 522.4 43.9 364 24-390 2-369 (434)
24 KOG0339 ATP-dependent RNA heli 100.0 1.8E-62 3.8E-67 493.1 31.4 373 19-393 219-595 (731)
25 KOG0347 RNA helicase [RNA proc 100.0 6.9E-64 1.5E-68 508.0 19.9 366 21-389 179-586 (731)
26 KOG0335 ATP-dependent RNA heli 100.0 8.3E-63 1.8E-67 505.0 27.8 367 20-387 71-458 (482)
27 PRK01297 ATP-dependent RNA hel 100.0 1.3E-60 2.9E-65 516.4 45.4 366 22-390 86-459 (475)
28 KOG0346 RNA helicase [RNA proc 100.0 5.3E-62 1.2E-66 483.1 28.6 364 22-386 18-423 (569)
29 PTZ00424 helicase 45; Provisio 100.0 7.5E-59 1.6E-63 493.7 42.3 367 22-393 27-394 (401)
30 KOG0334 RNA helicase [RNA proc 100.0 2.7E-60 5.8E-65 517.1 30.5 374 19-393 361-740 (997)
31 KOG0327 Translation initiation 100.0 7.7E-59 1.7E-63 456.8 25.5 365 24-395 27-392 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 2.4E-58 5.2E-63 449.1 25.5 361 23-390 90-461 (477)
33 KOG0350 DEAD-box ATP-dependent 100.0 7.6E-56 1.6E-60 445.6 28.2 359 24-385 128-552 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 3.7E-53 8E-58 475.3 41.3 361 22-391 14-406 (742)
35 KOG4284 DEAD box protein [Tran 100.0 1.7E-53 3.7E-58 438.3 21.7 354 21-380 23-387 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 9.9E-52 2.1E-56 425.7 24.9 359 24-384 133-506 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 2.9E-48 6.4E-53 418.8 37.0 324 40-381 6-341 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 1.4E-47 3E-52 427.8 39.2 337 27-381 441-795 (1195)
39 KOG0329 ATP-dependent RNA heli 100.0 4.6E-49 1E-53 366.1 14.8 333 21-393 40-376 (387)
40 PRK11057 ATP-dependent DNA hel 100.0 1.7E-46 3.8E-51 415.4 38.1 332 29-381 8-351 (607)
41 PRK02362 ski2-like helicase; P 100.0 1.5E-46 3.3E-51 425.8 33.9 337 24-373 2-397 (737)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.8E-46 1.3E-50 409.8 35.1 315 41-372 12-390 (844)
43 PRK13767 ATP-dependent helicas 100.0 1.7E-45 3.7E-50 421.1 39.6 338 30-371 18-396 (876)
44 PRK00254 ski2-like helicase; P 100.0 2.5E-45 5.4E-50 414.9 35.4 338 24-375 2-390 (720)
45 TIGR00580 mfd transcription-re 100.0 1.3E-44 2.9E-49 409.9 40.8 322 29-373 435-770 (926)
46 TIGR01389 recQ ATP-dependent D 100.0 7.8E-45 1.7E-49 403.1 36.9 324 37-381 4-339 (591)
47 PRK10689 transcription-repair 100.0 2.5E-43 5.5E-48 407.4 42.6 319 31-372 587-918 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 4.7E-43 1E-47 392.1 39.6 318 32-371 248-587 (681)
49 TIGR00643 recG ATP-dependent D 100.0 3.4E-42 7.5E-47 382.7 40.5 319 32-371 223-564 (630)
50 PRK09401 reverse gyrase; Revie 100.0 2E-42 4.3E-47 400.8 34.7 283 41-345 77-410 (1176)
51 PRK01172 ski2-like helicase; P 100.0 2.4E-42 5.2E-47 388.8 33.9 333 24-374 2-379 (674)
52 PHA02653 RNA helicase NPH-II; 100.0 1.8E-41 3.8E-46 372.5 36.1 312 47-375 166-516 (675)
53 PRK09751 putative ATP-dependen 100.0 1.1E-40 2.3E-45 387.3 35.9 323 65-391 1-405 (1490)
54 PRK12898 secA preprotein trans 100.0 3.4E-40 7.3E-45 357.0 33.1 320 41-374 100-587 (656)
55 TIGR01054 rgy reverse gyrase. 100.0 5.3E-40 1.1E-44 381.2 36.2 289 34-344 67-408 (1171)
56 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-39 2.6E-44 366.0 36.4 308 49-376 6-339 (819)
57 COG1201 Lhr Lhr-like helicases 100.0 5.8E-40 1.3E-44 360.4 32.3 336 30-372 8-361 (814)
58 PRK14701 reverse gyrase; Provi 100.0 6.7E-40 1.5E-44 387.0 33.6 327 33-379 67-462 (1638)
59 PRK11664 ATP-dependent RNA hel 100.0 2.7E-39 5.8E-44 364.1 34.9 307 49-375 9-341 (812)
60 PRK05580 primosome assembly pr 100.0 1.6E-38 3.4E-43 354.4 39.2 397 45-459 144-659 (679)
61 PRK09200 preprotein translocas 100.0 8.8E-39 1.9E-43 352.9 33.0 321 41-374 75-542 (790)
62 PHA02558 uvsW UvsW helicase; P 100.0 1.1E-38 2.3E-43 346.4 30.1 304 43-365 112-444 (501)
63 KOG0349 Putative DEAD-box RNA 100.0 5.7E-40 1.2E-44 325.1 17.0 286 94-382 287-624 (725)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.9E-38 6.3E-43 330.6 28.3 300 62-374 1-337 (358)
65 TIGR03714 secA2 accessory Sec 100.0 6E-38 1.3E-42 343.1 31.2 320 46-375 69-539 (762)
66 COG1111 MPH1 ERCC4-like helica 100.0 9.6E-37 2.1E-41 310.5 35.7 330 42-379 12-489 (542)
67 TIGR00963 secA preprotein tran 100.0 1.6E-37 3.5E-42 337.7 31.6 320 41-374 53-518 (745)
68 COG0514 RecQ Superfamily II DN 100.0 9.6E-37 2.1E-41 324.1 29.7 324 36-380 7-344 (590)
69 TIGR00595 priA primosomal prot 100.0 2.1E-36 4.5E-41 326.1 30.8 374 64-455 1-486 (505)
70 PRK13766 Hef nuclease; Provisi 100.0 1.1E-34 2.3E-39 332.5 37.9 325 42-374 12-480 (773)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 7.1E-35 1.5E-39 303.2 30.9 291 49-358 1-357 (357)
72 COG1204 Superfamily II helicas 100.0 1.2E-34 2.5E-39 322.7 28.7 343 28-380 14-416 (766)
73 COG1202 Superfamily II helicas 100.0 1.1E-34 2.4E-39 296.8 25.9 339 23-373 194-553 (830)
74 PRK11131 ATP-dependent RNA hel 100.0 5.3E-34 1.2E-38 326.3 32.8 304 47-376 76-414 (1294)
75 COG1205 Distinct helicase fami 100.0 3E-33 6.5E-38 315.6 33.3 352 30-386 55-437 (851)
76 TIGR00603 rad25 DNA repair hel 100.0 2.1E-33 4.6E-38 307.5 30.1 317 45-385 255-621 (732)
77 COG1198 PriA Primosomal protei 100.0 4.2E-33 9E-38 304.6 28.6 415 26-455 157-708 (730)
78 KOG0354 DEAD-box like helicase 100.0 9.5E-33 2.1E-37 296.7 26.7 331 42-380 59-536 (746)
79 cd00268 DEADc DEAD-box helicas 100.0 1.8E-31 3.9E-36 256.7 25.1 202 25-227 1-202 (203)
80 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.7E-30 3.8E-35 298.6 34.8 314 41-376 60-407 (1283)
81 PRK13104 secA preprotein trans 100.0 7.3E-31 1.6E-35 289.4 29.6 320 41-374 79-588 (896)
82 PRK12899 secA preprotein trans 100.0 1.4E-30 2.9E-35 286.6 30.6 148 26-181 65-228 (970)
83 PRK12904 preprotein translocas 100.0 5.4E-29 1.2E-33 274.6 37.9 319 41-374 78-574 (830)
84 COG1200 RecG RecG-like helicas 100.0 2.6E-29 5.6E-34 266.6 33.9 332 21-374 238-592 (677)
85 KOG0952 DNA/RNA helicase MER3/ 100.0 5.5E-30 1.2E-34 278.0 29.1 335 41-381 106-499 (1230)
86 PRK04914 ATP-dependent helicas 100.0 1.7E-29 3.6E-34 285.9 32.7 335 45-389 152-619 (956)
87 KOG0351 ATP-dependent DNA heli 100.0 7.5E-30 1.6E-34 286.2 26.5 331 34-381 252-600 (941)
88 PRK09694 helicase Cas3; Provis 100.0 2.6E-29 5.6E-34 282.7 30.4 311 45-362 286-664 (878)
89 PRK12906 secA preprotein trans 100.0 4.2E-29 9E-34 274.4 27.3 320 41-374 77-554 (796)
90 COG1061 SSL2 DNA or RNA helica 100.0 6.2E-29 1.3E-33 265.0 27.2 292 45-360 36-376 (442)
91 KOG0352 ATP-dependent DNA heli 100.0 2.5E-29 5.5E-34 249.5 21.2 327 33-379 6-368 (641)
92 COG1197 Mfd Transcription-repa 100.0 5E-27 1.1E-31 261.9 32.2 324 28-374 577-914 (1139)
93 KOG0353 ATP-dependent DNA heli 100.0 1.8E-27 3.9E-32 233.0 24.2 336 26-377 74-471 (695)
94 PRK13107 preprotein translocas 100.0 1.2E-26 2.7E-31 255.2 29.5 320 41-374 79-592 (908)
95 COG4098 comFA Superfamily II D 100.0 7.9E-26 1.7E-30 219.8 30.1 302 45-373 97-416 (441)
96 KOG0951 RNA helicase BRR2, DEA 100.0 8.1E-27 1.8E-31 256.1 25.9 342 30-381 296-710 (1674)
97 PRK11448 hsdR type I restricti 100.0 4.6E-26 9.9E-31 263.5 30.5 309 45-362 413-802 (1123)
98 PF00270 DEAD: DEAD/DEAH box h 99.9 5.5E-26 1.2E-30 211.6 18.7 165 47-215 1-168 (169)
99 KOG0950 DNA polymerase theta/e 99.9 2.4E-25 5.1E-30 241.4 20.4 344 29-380 207-618 (1008)
100 COG4581 Superfamily II RNA hel 99.9 3.4E-24 7.4E-29 239.4 27.3 318 37-373 112-537 (1041)
101 KOG0947 Cytoplasmic exosomal R 99.9 3.2E-24 6.9E-29 230.9 25.6 315 41-373 294-723 (1248)
102 PLN03142 Probable chromatin-re 99.9 9.4E-23 2E-27 232.0 31.9 318 45-374 169-600 (1033)
103 COG1643 HrpA HrpA-like helicas 99.9 1.2E-22 2.6E-27 225.8 31.2 339 46-414 51-417 (845)
104 KOG0922 DEAH-box RNA helicase 99.9 2.2E-22 4.8E-27 212.0 27.9 361 47-438 53-444 (674)
105 PRK12900 secA preprotein trans 99.9 7.8E-23 1.7E-27 226.2 23.5 127 246-374 578-712 (1025)
106 COG1203 CRISPR-associated heli 99.9 1.1E-22 2.3E-27 229.6 24.5 329 46-379 196-556 (733)
107 KOG0923 mRNA splicing factor A 99.9 1.8E-22 3.9E-27 210.4 23.6 311 46-374 266-607 (902)
108 COG1110 Reverse gyrase [DNA re 99.9 1.4E-21 3.1E-26 213.1 30.6 280 41-344 79-416 (1187)
109 KOG0948 Nuclear exosomal RNA h 99.9 4.3E-23 9.2E-28 217.4 16.5 308 46-373 130-539 (1041)
110 KOG0925 mRNA splicing factor A 99.9 1.1E-21 2.4E-26 198.2 25.8 395 22-452 24-461 (699)
111 TIGR01407 dinG_rel DnaQ family 99.9 5.6E-21 1.2E-25 219.8 33.5 333 30-373 231-814 (850)
112 TIGR00631 uvrb excinuclease AB 99.9 1.3E-20 2.8E-25 208.4 30.8 130 249-379 425-559 (655)
113 PRK12326 preprotein translocas 99.9 1.6E-20 3.6E-25 202.7 30.1 319 41-374 75-548 (764)
114 PRK05298 excinuclease ABC subu 99.9 6.1E-21 1.3E-25 212.5 27.3 144 249-393 429-586 (652)
115 KOG0924 mRNA splicing factor A 99.9 1.4E-20 2.9E-25 196.7 25.2 366 42-437 353-751 (1042)
116 TIGR00348 hsdR type I site-spe 99.9 1.2E-19 2.7E-24 202.8 29.3 311 46-371 239-649 (667)
117 PRK14873 primosome assembly pr 99.9 1.1E-19 2.3E-24 200.7 25.5 333 64-427 164-606 (665)
118 PRK13103 secA preprotein trans 99.9 1.3E-19 2.8E-24 200.2 26.1 317 41-374 79-592 (913)
119 smart00487 DEXDc DEAD-like hel 99.9 7.3E-20 1.6E-24 173.6 20.9 187 40-230 3-191 (201)
120 COG4096 HsdR Type I site-speci 99.8 9.4E-20 2E-24 196.4 22.6 295 45-360 165-525 (875)
121 COG0556 UvrB Helicase subunit 99.8 4.8E-19 1E-23 181.8 26.2 166 199-372 386-556 (663)
122 KOG0926 DEAH-box RNA helicase 99.8 2.5E-19 5.5E-24 190.2 23.4 302 52-373 263-704 (1172)
123 PRK07246 bifunctional ATP-depe 99.8 2.7E-18 5.7E-23 195.3 32.0 319 38-373 239-783 (820)
124 KOG0920 ATP-dependent RNA heli 99.8 3E-18 6.4E-23 190.2 29.3 317 46-376 174-547 (924)
125 PRK12903 secA preprotein trans 99.8 1.3E-17 2.9E-22 182.6 33.7 319 41-374 75-540 (925)
126 KOG0385 Chromatin remodeling c 99.8 4.9E-18 1.1E-22 180.3 24.6 320 45-375 167-601 (971)
127 KOG1123 RNA polymerase II tran 99.8 2.7E-19 5.9E-24 181.5 12.2 318 45-385 302-667 (776)
128 CHL00122 secA preprotein trans 99.8 1.7E-17 3.8E-22 182.8 26.6 279 41-333 73-491 (870)
129 PRK12902 secA preprotein trans 99.8 1.9E-15 4.1E-20 166.5 34.9 280 41-333 82-506 (939)
130 COG4889 Predicted helicase [Ge 99.8 7.7E-19 1.7E-23 187.7 7.9 307 44-360 160-572 (1518)
131 cd00079 HELICc Helicase superf 99.7 2.3E-17 5E-22 146.3 14.7 122 248-369 10-131 (131)
132 KOG0949 Predicted helicase, DE 99.7 1.1E-16 2.3E-21 173.7 22.4 166 46-218 512-682 (1330)
133 KOG0387 Transcription-coupled 99.7 3.6E-16 7.8E-21 167.1 23.9 318 45-373 205-658 (923)
134 PRK08074 bifunctional ATP-depe 99.7 2.2E-15 4.7E-20 174.6 32.1 121 253-373 738-893 (928)
135 TIGR03117 cas_csf4 CRISPR-asso 99.7 6.5E-15 1.4E-19 161.0 31.1 79 265-345 469-561 (636)
136 cd00046 DEXDc DEAD-like helica 99.7 4.5E-16 9.7E-21 138.8 16.8 144 61-209 1-144 (144)
137 KOG0390 DNA repair protein, SN 99.7 1E-14 2.2E-19 159.8 29.6 320 45-372 238-706 (776)
138 KOG0384 Chromodomain-helicase 99.7 1.6E-16 3.5E-21 176.3 13.6 316 44-374 369-812 (1373)
139 PF00271 Helicase_C: Helicase 99.7 9E-17 2E-21 129.6 8.7 78 284-361 1-78 (78)
140 KOG0953 Mitochondrial RNA heli 99.6 3.9E-15 8.5E-20 153.6 16.9 279 61-389 192-489 (700)
141 PF04851 ResIII: Type III rest 99.6 4.6E-15 9.9E-20 139.5 14.4 154 45-211 3-184 (184)
142 KOG0951 RNA helicase BRR2, DEA 99.6 9.3E-14 2E-18 154.4 25.6 320 45-391 1143-1509(1674)
143 PRK12901 secA preprotein trans 99.6 3E-14 6.5E-19 158.6 21.7 127 245-374 607-742 (1112)
144 KOG1000 Chromatin remodeling p 99.6 1.3E-13 2.9E-18 140.5 23.7 308 43-366 196-594 (689)
145 PRK11747 dinG ATP-dependent DN 99.6 1.7E-12 3.6E-17 146.3 35.1 120 251-373 519-674 (697)
146 KOG4150 Predicted ATP-dependen 99.6 2.1E-14 4.4E-19 148.1 17.5 344 39-388 280-657 (1034)
147 KOG0392 SNF2 family DNA-depend 99.6 2E-13 4.3E-18 151.6 25.0 343 22-373 931-1454(1549)
148 KOG0389 SNF2 family DNA-depend 99.6 1E-13 2.2E-18 148.4 19.4 320 46-375 400-890 (941)
149 smart00490 HELICc helicase sup 99.5 4E-14 8.7E-19 114.5 8.8 81 281-361 2-82 (82)
150 COG1199 DinG Rad3-related DNA 99.5 1.9E-12 4E-17 146.3 25.1 104 266-372 479-616 (654)
151 TIGR02562 cas3_yersinia CRISPR 99.5 1.2E-12 2.6E-17 146.6 22.2 326 45-378 408-899 (1110)
152 PF06862 DUF1253: Protein of u 99.5 1.6E-11 3.5E-16 128.3 27.8 236 143-378 131-420 (442)
153 TIGR00604 rad3 DNA repair heli 99.5 1.4E-11 3E-16 139.8 28.3 74 41-116 6-83 (705)
154 KOG0386 Chromatin remodeling c 99.4 2.8E-12 6.1E-17 140.6 13.1 318 45-373 394-838 (1157)
155 COG0653 SecA Preprotein transl 99.4 5E-11 1.1E-15 131.5 20.7 319 42-374 78-546 (822)
156 PF02399 Herpes_ori_bp: Origin 99.3 2.1E-10 4.5E-15 126.0 21.8 289 63-373 52-388 (824)
157 COG0610 Type I site-specific r 99.2 9.2E-09 2E-13 119.2 32.5 298 61-371 274-651 (962)
158 KOG2340 Uncharacterized conser 99.2 6.9E-10 1.5E-14 114.7 19.4 333 43-376 214-671 (698)
159 PF07652 Flavi_DEAD: Flaviviru 99.2 2.3E-11 5.1E-16 107.0 7.2 138 60-216 4-143 (148)
160 PF00176 SNF2_N: SNF2 family N 99.2 1.4E-10 3E-15 118.0 12.1 153 49-209 1-172 (299)
161 KOG1002 Nucleotide excision re 99.2 1.8E-09 3.8E-14 110.7 19.6 109 267-375 639-751 (791)
162 KOG0388 SNF2 family DNA-depend 99.2 1.8E-09 4E-14 114.6 19.5 109 265-373 1043-1154(1185)
163 COG0553 HepA Superfamily II DN 99.1 3.1E-09 6.7E-14 124.3 22.0 125 250-374 692-823 (866)
164 KOG0391 SNF2 family DNA-depend 99.1 1.3E-08 2.9E-13 113.0 24.2 116 259-374 1269-1388(1958)
165 smart00488 DEXDc2 DEAD-like he 99.1 1.3E-09 2.9E-14 110.2 15.2 74 42-116 6-84 (289)
166 smart00489 DEXDc3 DEAD-like he 99.1 1.3E-09 2.9E-14 110.2 15.2 74 42-116 6-84 (289)
167 KOG4439 RNA polymerase II tran 99.0 1.2E-08 2.6E-13 108.8 18.2 120 248-367 727-850 (901)
168 PF07517 SecA_DEAD: SecA DEAD- 98.8 9.5E-08 2.1E-12 94.4 14.7 132 40-181 73-210 (266)
169 KOG0921 Dosage compensation co 98.7 2.8E-07 6.2E-12 100.7 15.7 309 54-373 387-774 (1282)
170 KOG1015 Transcription regulato 98.7 1.5E-06 3.2E-11 95.6 20.2 121 252-372 1128-1276(1567)
171 KOG0952 DNA/RNA helicase MER3/ 98.5 1.9E-08 4.1E-13 111.7 0.4 259 45-315 927-1204(1230)
172 PRK15483 type III restriction- 98.5 1.1E-06 2.4E-11 99.8 13.6 143 62-211 61-240 (986)
173 PF13086 AAA_11: AAA domain; P 98.4 8.8E-07 1.9E-11 86.3 7.7 70 45-115 1-75 (236)
174 TIGR00596 rad1 DNA repair prot 98.3 2.2E-05 4.7E-10 89.3 17.7 67 142-210 6-73 (814)
175 COG3587 Restriction endonuclea 98.2 8.8E-05 1.9E-09 81.8 19.1 73 315-387 482-567 (985)
176 PF13604 AAA_30: AAA domain; P 98.2 1E-05 2.2E-10 77.2 10.3 124 45-208 1-130 (196)
177 TIGR00376 DNA helicase, putati 98.1 0.00048 1E-08 77.2 23.6 67 44-115 156-223 (637)
178 PF02562 PhoH: PhoH-like prote 98.1 5.9E-06 1.3E-10 78.6 7.0 146 44-208 3-155 (205)
179 PF13307 Helicase_C_2: Helicas 98.0 1.8E-05 4E-10 73.4 8.0 106 265-372 8-149 (167)
180 PRK10536 hypothetical protein; 98.0 0.00013 2.9E-09 71.4 13.5 143 41-205 55-209 (262)
181 PF09848 DUF2075: Uncharacteri 98.0 2.8E-05 6.1E-10 81.2 9.1 108 62-195 3-117 (352)
182 KOG1802 RNA helicase nonsense 97.9 0.0005 1.1E-08 73.9 16.4 82 39-128 404-485 (935)
183 PF13245 AAA_19: Part of AAA d 97.8 8.3E-05 1.8E-09 59.2 7.7 60 53-113 2-62 (76)
184 KOG1016 Predicted DNA helicase 97.8 0.0021 4.5E-08 70.2 20.4 108 266-373 719-849 (1387)
185 PF13872 AAA_34: P-loop contai 97.8 0.00016 3.5E-09 72.0 11.0 159 45-213 37-224 (303)
186 PF12340 DUF3638: Protein of u 97.8 0.00045 9.7E-09 66.5 13.5 153 24-183 4-187 (229)
187 TIGR01448 recD_rel helicase, p 97.7 0.0004 8.7E-09 79.0 14.2 135 39-208 318-452 (720)
188 PRK10875 recD exonuclease V su 97.6 0.00082 1.8E-08 74.7 14.7 144 46-208 153-301 (615)
189 KOG1803 DNA helicase [Replicat 97.6 0.00013 2.8E-09 78.0 7.7 63 45-112 185-248 (649)
190 TIGR01447 recD exodeoxyribonuc 97.6 0.00097 2.1E-08 73.9 14.3 143 47-208 147-295 (586)
191 KOG1132 Helicase of the DEAD s 97.5 0.00075 1.6E-08 75.0 11.4 136 42-181 19-260 (945)
192 PRK13889 conjugal transfer rel 97.5 0.0019 4.1E-08 75.2 15.2 128 39-208 341-470 (988)
193 TIGR02760 TraI_TIGR conjugativ 97.3 0.02 4.3E-07 72.0 22.3 211 42-287 427-647 (1960)
194 PRK12723 flagellar biosynthesi 97.3 0.0077 1.7E-07 63.3 16.1 130 61-220 175-309 (388)
195 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0045 9.8E-08 70.9 15.5 135 30-206 338-474 (744)
196 PRK08181 transposase; Validate 97.3 0.0057 1.2E-07 61.1 14.3 122 46-214 88-214 (269)
197 PF00580 UvrD-helicase: UvrD/R 97.3 0.0006 1.3E-08 69.6 7.7 104 46-158 1-104 (315)
198 PRK06526 transposase; Provisio 97.2 0.0013 2.8E-08 65.2 8.6 112 55-213 93-205 (254)
199 PRK04296 thymidine kinase; Pro 97.2 0.00058 1.3E-08 64.8 5.6 109 61-208 3-114 (190)
200 cd00009 AAA The AAA+ (ATPases 97.1 0.004 8.7E-08 55.1 10.2 19 60-78 19-37 (151)
201 PF05970 PIF1: PIF1-like helic 97.1 0.0018 3.9E-08 67.9 9.1 60 45-109 1-66 (364)
202 PF13401 AAA_22: AAA domain; P 97.1 0.0018 3.9E-08 57.0 7.4 19 60-78 4-22 (131)
203 PRK14974 cell division protein 97.1 0.0047 1E-07 63.6 11.4 130 62-220 142-275 (336)
204 KOG1805 DNA replication helica 97.0 0.0036 7.7E-08 70.4 10.5 137 28-182 656-810 (1100)
205 PRK13826 Dtr system oriT relax 97.0 0.01 2.3E-07 69.6 14.7 138 29-208 366-505 (1102)
206 PRK14722 flhF flagellar biosyn 97.0 0.0041 9E-08 64.8 10.2 130 60-220 137-269 (374)
207 smart00382 AAA ATPases associa 97.0 0.0029 6.3E-08 55.5 7.8 42 60-106 2-43 (148)
208 PRK05703 flhF flagellar biosyn 96.9 0.039 8.5E-07 59.0 16.9 129 60-220 221-354 (424)
209 PF00448 SRP54: SRP54-type pro 96.9 0.0019 4.1E-08 61.5 6.2 127 63-217 4-133 (196)
210 PF14617 CMS1: U3-containing 9 96.8 0.0038 8.2E-08 61.3 7.5 86 92-179 125-212 (252)
211 smart00492 HELICc3 helicase su 96.7 0.014 3E-07 52.5 10.1 49 296-344 27-78 (141)
212 PRK07952 DNA replication prote 96.7 0.019 4.2E-07 56.4 12.0 109 61-214 100-210 (244)
213 PRK11889 flhF flagellar biosyn 96.7 0.013 2.8E-07 61.1 11.0 128 61-220 242-374 (436)
214 COG1875 NYN ribonuclease and A 96.7 0.0068 1.5E-07 61.5 8.5 144 41-206 224-385 (436)
215 COG1419 FlhF Flagellar GTP-bin 96.5 0.047 1E-06 56.8 13.8 131 60-220 203-335 (407)
216 smart00491 HELICc2 helicase su 96.5 0.016 3.5E-07 52.1 9.1 68 304-371 32-137 (142)
217 PRK12727 flagellar biosynthesi 96.5 0.095 2.1E-06 56.8 16.2 127 60-219 350-480 (559)
218 cd01120 RecA-like_NTPases RecA 96.4 0.028 6.1E-07 50.9 10.2 45 167-211 84-138 (165)
219 PRK05642 DNA replication initi 96.2 0.029 6.2E-07 55.1 9.9 44 168-211 97-141 (234)
220 PHA02533 17 large terminase pr 96.1 0.043 9.4E-07 60.3 11.6 146 46-208 60-209 (534)
221 PRK08727 hypothetical protein; 96.1 0.022 4.7E-07 55.9 8.5 47 167-213 92-140 (233)
222 PRK08116 hypothetical protein; 96.1 0.055 1.2E-06 54.2 11.4 110 61-215 115-227 (268)
223 cd01124 KaiC KaiC is a circadi 96.1 0.034 7.4E-07 52.1 9.3 48 63-116 2-49 (187)
224 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.022 4.7E-07 55.3 8.0 42 169-210 91-133 (226)
225 PRK14723 flhF flagellar biosyn 96.1 0.089 1.9E-06 59.6 13.7 127 62-220 187-317 (767)
226 PRK13709 conjugal transfer nic 96.1 0.063 1.4E-06 66.2 13.4 63 45-108 967-1031(1747)
227 PRK06921 hypothetical protein; 96.0 0.1 2.2E-06 52.2 12.9 44 60-108 117-160 (266)
228 KOG0989 Replication factor C, 96.0 0.015 3.2E-07 57.9 6.6 45 164-209 125-169 (346)
229 KOG1001 Helicase-like transcri 96.0 0.033 7.2E-07 62.4 10.1 137 61-210 153-293 (674)
230 PRK14712 conjugal transfer nic 96.0 0.051 1.1E-06 66.1 12.1 62 45-109 835-900 (1623)
231 PRK00771 signal recognition pa 96.0 0.062 1.3E-06 57.5 11.6 127 62-219 97-227 (437)
232 COG3421 Uncharacterized protei 95.9 0.0072 1.6E-07 64.7 4.2 143 65-212 2-168 (812)
233 TIGR01425 SRP54_euk signal rec 95.9 0.064 1.4E-06 56.9 11.1 130 63-220 103-235 (429)
234 PRK05707 DNA polymerase III su 95.9 0.048 1E-06 56.3 10.0 37 45-81 3-43 (328)
235 KOG1131 RNA polymerase II tran 95.9 0.051 1.1E-06 57.5 10.0 72 42-114 13-88 (755)
236 PRK00149 dnaA chromosomal repl 95.9 0.052 1.1E-06 58.7 10.6 109 61-214 149-259 (450)
237 COG1484 DnaC DNA replication p 95.8 0.047 1E-06 54.2 9.3 70 39-114 77-153 (254)
238 PRK12377 putative replication 95.8 0.061 1.3E-06 53.1 9.9 102 61-208 102-205 (248)
239 PRK08769 DNA polymerase III su 95.8 0.054 1.2E-06 55.5 9.8 145 43-209 2-153 (319)
240 PF03354 Terminase_1: Phage Te 95.7 0.038 8.2E-07 60.2 8.9 150 48-206 1-160 (477)
241 COG3973 Superfamily I DNA and 95.7 0.067 1.5E-06 57.8 10.2 91 26-117 185-284 (747)
242 PRK06731 flhF flagellar biosyn 95.7 0.11 2.5E-06 51.8 11.4 157 61-262 76-237 (270)
243 PRK06893 DNA replication initi 95.7 0.026 5.6E-07 55.2 6.8 45 167-211 90-136 (229)
244 PF13177 DNA_pol3_delta2: DNA 95.6 0.067 1.4E-06 49.3 8.9 49 167-216 101-149 (162)
245 PRK08084 DNA replication initi 95.6 0.035 7.6E-07 54.5 7.4 43 169-211 98-142 (235)
246 PRK06835 DNA replication prote 95.6 0.21 4.5E-06 51.5 13.3 110 60-214 183-294 (329)
247 PRK10919 ATP-dependent DNA hel 95.6 0.025 5.5E-07 64.2 7.2 69 45-116 2-70 (672)
248 TIGR00362 DnaA chromosomal rep 95.6 0.09 1.9E-06 56.1 11.0 109 61-214 137-247 (405)
249 TIGR01547 phage_term_2 phage t 95.6 0.032 7E-07 59.3 7.5 136 62-212 3-143 (396)
250 PRK05580 primosome assembly pr 95.6 0.074 1.6E-06 60.5 10.7 93 249-342 173-266 (679)
251 PRK11054 helD DNA helicase IV; 95.5 0.058 1.3E-06 61.1 9.7 70 44-116 195-264 (684)
252 PF13871 Helicase_C_4: Helicas 95.5 0.038 8.3E-07 55.0 7.1 66 307-372 52-126 (278)
253 PHA02544 44 clamp loader, smal 95.5 0.065 1.4E-06 55.0 9.1 39 168-206 100-138 (316)
254 PRK14087 dnaA chromosomal repl 95.4 0.13 2.9E-06 55.4 11.7 110 61-213 142-253 (450)
255 PRK08903 DnaA regulatory inact 95.4 0.046 9.9E-07 53.2 7.5 43 168-211 90-133 (227)
256 PRK11331 5-methylcytosine-spec 95.4 0.093 2E-06 55.8 10.2 33 46-78 180-212 (459)
257 COG2256 MGS1 ATPase related to 95.4 0.046 1E-06 56.4 7.5 18 61-78 49-66 (436)
258 TIGR00064 ftsY signal recognit 95.4 0.17 3.6E-06 50.9 11.4 132 61-220 73-213 (272)
259 PRK12724 flagellar biosynthesi 95.4 0.24 5.3E-06 52.3 12.9 124 63-220 226-356 (432)
260 TIGR03015 pepcterm_ATPase puta 95.3 0.25 5.3E-06 49.3 12.6 34 45-78 23-61 (269)
261 TIGR00595 priA primosomal prot 95.3 0.087 1.9E-06 57.7 9.9 91 249-340 8-99 (505)
262 PRK10917 ATP-dependent DNA hel 95.3 0.075 1.6E-06 60.5 9.7 92 249-340 293-389 (681)
263 PRK09183 transposase/IS protei 95.3 0.16 3.5E-06 50.6 10.9 46 57-108 99-144 (259)
264 PRK10867 signal recognition pa 95.2 0.15 3.2E-06 54.5 11.0 130 63-220 103-236 (433)
265 CHL00181 cbbX CbbX; Provisiona 95.2 0.3 6.5E-06 49.5 12.8 19 60-78 59-77 (287)
266 PRK11773 uvrD DNA-dependent he 95.2 0.046 1E-06 62.7 7.7 71 44-117 8-78 (721)
267 TIGR01075 uvrD DNA helicase II 95.2 0.041 8.8E-07 63.2 7.2 71 44-117 3-73 (715)
268 PF00004 AAA: ATPase family as 95.2 0.25 5.4E-06 43.0 10.8 16 63-78 1-16 (132)
269 PRK12726 flagellar biosynthesi 95.1 0.12 2.7E-06 53.7 9.6 129 60-219 206-338 (407)
270 TIGR02881 spore_V_K stage V sp 95.1 0.2 4.3E-06 50.0 11.0 18 61-78 43-60 (261)
271 PLN03025 replication factor C 95.1 0.24 5.3E-06 50.9 11.9 39 168-208 99-137 (319)
272 PF00308 Bac_DnaA: Bacterial d 95.0 0.12 2.5E-06 50.2 8.8 107 62-213 36-144 (219)
273 KOG0298 DEAD box-containing he 95.0 0.053 1.1E-06 63.0 7.1 151 60-215 374-556 (1394)
274 TIGR01074 rep ATP-dependent DN 94.9 0.061 1.3E-06 61.2 7.7 68 46-116 2-69 (664)
275 PRK14721 flhF flagellar biosyn 94.9 0.76 1.6E-05 48.9 15.3 160 60-262 191-352 (420)
276 cd01122 GP4d_helicase GP4d_hel 94.9 0.099 2.1E-06 52.3 8.4 65 33-101 3-67 (271)
277 KOG0738 AAA+-type ATPase [Post 94.9 0.12 2.6E-06 53.1 8.8 58 19-76 179-261 (491)
278 PRK08533 flagellar accessory p 94.9 0.16 3.6E-06 49.6 9.6 52 59-116 23-74 (230)
279 PF05876 Terminase_GpA: Phage 94.9 0.055 1.2E-06 59.9 6.8 122 45-181 16-147 (557)
280 PRK13342 recombination factor 94.9 0.11 2.4E-06 55.5 9.0 37 168-209 92-128 (413)
281 PRK14088 dnaA chromosomal repl 94.8 0.29 6.2E-06 52.8 11.9 49 168-216 194-244 (440)
282 TIGR00959 ffh signal recogniti 94.8 0.25 5.4E-06 52.7 11.2 130 63-220 102-235 (428)
283 KOG2028 ATPase related to the 94.8 0.078 1.7E-06 54.0 6.8 98 61-211 163-260 (554)
284 PRK13833 conjugal transfer pro 94.8 0.11 2.3E-06 53.4 8.1 65 37-106 122-187 (323)
285 PRK12422 chromosomal replicati 94.7 0.14 2.9E-06 55.2 9.2 49 167-215 201-251 (445)
286 COG4962 CpaF Flp pilus assembl 94.7 0.07 1.5E-06 54.3 6.5 74 29-108 141-215 (355)
287 PRK14873 primosome assembly pr 94.7 0.2 4.3E-06 56.6 10.7 94 248-342 170-265 (665)
288 cd03115 SRP The signal recogni 94.7 0.59 1.3E-05 43.2 12.4 53 168-220 82-135 (173)
289 PRK12402 replication factor C 94.6 0.26 5.6E-06 50.9 10.9 40 167-208 124-163 (337)
290 TIGR02760 TraI_TIGR conjugativ 94.6 0.24 5.2E-06 62.6 12.2 61 45-109 1019-1084(1960)
291 TIGR03499 FlhF flagellar biosy 94.6 0.092 2E-06 53.0 7.1 18 61-78 195-212 (282)
292 TIGR00643 recG ATP-dependent D 94.5 0.13 2.8E-06 58.1 8.9 92 249-340 267-363 (630)
293 COG2805 PilT Tfp pilus assembl 94.5 0.12 2.6E-06 51.5 7.3 25 63-88 128-152 (353)
294 PRK06964 DNA polymerase III su 94.5 0.25 5.4E-06 51.2 10.0 42 166-208 130-171 (342)
295 PRK07764 DNA polymerase III su 94.4 0.2 4.4E-06 57.8 10.2 39 167-206 119-157 (824)
296 PF05127 Helicase_RecD: Helica 94.4 0.069 1.5E-06 49.7 5.3 124 64-210 1-124 (177)
297 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.84 1.8E-05 41.8 12.2 131 63-219 5-148 (159)
298 PRK14086 dnaA chromosomal repl 94.4 0.3 6.4E-06 54.1 11.0 48 167-214 376-425 (617)
299 PRK06995 flhF flagellar biosyn 94.4 0.16 3.5E-06 54.8 8.8 18 61-78 257-274 (484)
300 PF05729 NACHT: NACHT domain 94.3 0.38 8.2E-06 43.6 10.0 45 62-107 2-47 (166)
301 PRK14960 DNA polymerase III su 94.2 0.23 5E-06 55.3 9.6 40 167-208 117-156 (702)
302 PF05496 RuvB_N: Holliday junc 94.2 0.21 4.5E-06 48.2 8.0 17 62-78 52-68 (233)
303 TIGR00580 mfd transcription-re 94.1 0.2 4.3E-06 58.7 9.5 92 249-340 483-579 (926)
304 PRK07003 DNA polymerase III su 94.1 0.25 5.4E-06 55.8 9.7 40 167-208 118-157 (830)
305 PRK13894 conjugal transfer ATP 94.1 0.15 3.3E-06 52.3 7.6 67 35-106 124-191 (319)
306 PRK07994 DNA polymerase III su 94.1 0.42 9E-06 53.6 11.5 38 167-205 118-155 (647)
307 PRK14961 DNA polymerase III su 94.1 0.36 7.8E-06 50.7 10.5 38 167-205 118-155 (363)
308 TIGR02785 addA_Gpos recombinat 94.1 0.13 2.8E-06 62.5 8.1 123 45-179 1-126 (1232)
309 COG1474 CDC6 Cdc6-related prot 94.1 0.42 9.2E-06 50.0 10.9 27 61-88 43-69 (366)
310 PRK08939 primosomal protein Dn 94.1 0.32 7E-06 49.6 9.8 50 166-215 215-267 (306)
311 TIGR02928 orc1/cdc6 family rep 94.0 0.58 1.3E-05 48.9 12.0 24 61-85 41-64 (365)
312 PRK04195 replication factor C 94.0 0.47 1E-05 51.8 11.6 19 60-78 39-57 (482)
313 PRK09111 DNA polymerase III su 94.0 0.42 9.2E-06 53.3 11.3 40 166-206 130-169 (598)
314 PRK14958 DNA polymerase III su 94.0 0.43 9.3E-06 52.3 11.2 39 167-206 118-156 (509)
315 KOG0742 AAA+-type ATPase [Post 94.0 0.2 4.3E-06 51.8 7.8 137 19-209 348-493 (630)
316 COG2909 MalT ATP-dependent tra 94.0 0.16 3.5E-06 57.2 7.8 45 167-211 128-172 (894)
317 COG1198 PriA Primosomal protei 94.0 0.16 3.5E-06 57.4 7.9 94 245-339 224-318 (730)
318 PRK08691 DNA polymerase III su 93.9 0.45 9.7E-06 53.4 11.1 39 167-206 118-156 (709)
319 PRK14964 DNA polymerase III su 93.9 0.37 8E-06 52.3 10.3 40 167-208 115-154 (491)
320 PF13173 AAA_14: AAA domain 93.9 0.44 9.6E-06 41.8 9.2 37 168-208 61-97 (128)
321 TIGR01073 pcrA ATP-dependent D 93.8 0.14 3E-06 59.0 7.3 70 44-116 3-72 (726)
322 PRK12323 DNA polymerase III su 93.7 0.4 8.7E-06 53.4 10.2 42 166-208 122-163 (700)
323 PRK10416 signal recognition pa 93.7 0.86 1.9E-05 46.8 12.2 54 167-220 195-255 (318)
324 PRK08699 DNA polymerase III su 93.7 0.43 9.3E-06 49.2 10.0 35 46-80 2-41 (325)
325 KOG0991 Replication factor C, 93.7 0.16 3.4E-06 48.8 6.1 40 164-204 109-148 (333)
326 COG1435 Tdk Thymidine kinase [ 93.6 0.28 6E-06 46.0 7.5 103 61-194 5-107 (201)
327 PRK13341 recombination factor 93.6 0.28 6.1E-06 55.9 9.2 40 168-212 109-148 (725)
328 TIGR02880 cbbX_cfxQ probable R 93.6 0.84 1.8E-05 46.1 11.8 19 60-78 58-76 (284)
329 COG1444 Predicted P-loop ATPas 93.6 0.4 8.7E-06 54.1 10.1 150 37-210 206-357 (758)
330 PRK06871 DNA polymerase III su 93.6 0.44 9.4E-06 49.0 9.7 42 166-208 105-146 (325)
331 PRK07471 DNA polymerase III su 93.5 0.45 9.8E-06 49.8 9.9 43 166-209 139-181 (365)
332 PRK11823 DNA repair protein Ra 93.5 0.24 5.2E-06 53.4 8.0 59 53-117 68-131 (446)
333 cd01121 Sms Sms (bacterial rad 93.4 0.33 7.2E-06 50.9 8.7 52 60-117 82-133 (372)
334 PRK14956 DNA polymerase III su 93.4 0.54 1.2E-05 50.7 10.3 18 63-80 43-60 (484)
335 PRK00411 cdc6 cell division co 93.3 0.56 1.2E-05 49.7 10.6 18 61-78 56-73 (394)
336 PTZ00112 origin recognition co 93.3 1.6 3.4E-05 50.2 14.0 41 167-208 868-909 (1164)
337 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.34 7.5E-06 47.5 8.2 52 60-117 21-72 (237)
338 PRK14950 DNA polymerase III su 93.2 0.87 1.9E-05 51.0 12.2 41 166-208 118-158 (585)
339 PRK09112 DNA polymerase III su 93.2 0.66 1.4E-05 48.3 10.5 41 166-207 139-179 (351)
340 COG0470 HolB ATPase involved i 93.2 0.25 5.3E-06 50.6 7.3 39 167-206 108-146 (325)
341 PRK14955 DNA polymerase III su 93.1 0.8 1.7E-05 48.7 11.3 41 166-208 125-165 (397)
342 PRK07940 DNA polymerase III su 93.0 0.45 9.7E-06 50.4 9.0 44 166-211 115-158 (394)
343 PRK14951 DNA polymerase III su 93.0 0.54 1.2E-05 52.5 10.1 41 167-209 123-163 (618)
344 PF01443 Viral_helicase1: Vira 93.0 0.14 3.1E-06 49.7 5.1 23 320-342 184-206 (234)
345 cd00984 DnaB_C DnaB helicase C 93.0 0.69 1.5E-05 45.3 9.9 46 59-108 12-60 (242)
346 PTZ00293 thymidine kinase; Pro 92.9 0.33 7E-06 46.5 7.1 39 60-103 4-42 (211)
347 PRK05986 cob(I)alamin adenolsy 92.9 1.2 2.6E-05 41.9 10.7 145 59-219 21-168 (191)
348 PF02456 Adeno_IVa2: Adenoviru 92.9 0.26 5.6E-06 49.3 6.4 40 63-105 90-129 (369)
349 TIGR02782 TrbB_P P-type conjug 92.8 0.41 8.8E-06 48.8 8.2 67 35-106 108-175 (299)
350 COG0593 DnaA ATPase involved i 92.8 0.48 1E-05 49.9 8.8 47 168-214 175-223 (408)
351 PRK07993 DNA polymerase III su 92.8 0.49 1.1E-05 48.9 8.8 43 166-209 106-148 (334)
352 PRK10436 hypothetical protein; 92.8 0.41 8.8E-06 51.7 8.5 38 47-85 203-242 (462)
353 PRK06904 replicative DNA helic 92.8 1.2 2.6E-05 48.4 12.1 116 59-183 220-349 (472)
354 COG0552 FtsY Signal recognitio 92.7 0.81 1.8E-05 46.5 9.9 128 63-219 142-279 (340)
355 PHA03333 putative ATPase subun 92.7 2.2 4.8E-05 47.7 14.0 149 46-209 170-332 (752)
356 PRK05973 replicative DNA helic 92.6 0.13 2.9E-06 50.3 4.2 83 27-116 22-114 (237)
357 PRK06090 DNA polymerase III su 92.6 0.65 1.4E-05 47.6 9.3 43 166-209 106-148 (319)
358 TIGR00678 holB DNA polymerase 92.6 0.76 1.6E-05 43.2 9.2 41 166-208 94-134 (188)
359 PRK10689 transcription-repair 92.5 0.51 1.1E-05 56.7 9.5 91 249-339 632-727 (1147)
360 TIGR03881 KaiC_arch_4 KaiC dom 92.4 1 2.2E-05 43.8 10.1 51 60-116 20-70 (229)
361 TIGR03600 phage_DnaB phage rep 92.4 1.6 3.6E-05 46.7 12.6 39 59-101 193-231 (421)
362 PRK14949 DNA polymerase III su 92.3 0.77 1.7E-05 52.9 10.2 38 167-205 118-155 (944)
363 KOG1133 Helicase of the DEAD s 92.3 0.2 4.4E-06 54.9 5.4 44 42-86 13-60 (821)
364 cd01129 PulE-GspE PulE/GspE Th 92.3 0.44 9.6E-06 47.6 7.5 61 37-105 58-120 (264)
365 COG4098 comFA Superfamily II D 92.3 0.72 1.6E-05 46.8 8.7 105 80-196 292-398 (441)
366 PF06745 KaiC: KaiC; InterPro 92.2 0.22 4.7E-06 48.4 5.1 131 60-209 19-160 (226)
367 KOG0732 AAA+-type ATPase conta 92.2 0.3 6.6E-06 56.7 6.9 143 22-209 261-414 (1080)
368 COG1200 RecG RecG-like helicas 92.2 0.63 1.4E-05 51.5 9.0 87 253-340 299-390 (677)
369 PHA00729 NTP-binding motif con 92.2 1.5 3.2E-05 42.6 10.6 17 62-78 19-35 (226)
370 PF03796 DnaB_C: DnaB-like hel 92.1 0.58 1.3E-05 46.5 8.2 138 60-208 19-179 (259)
371 COG4626 Phage terminase-like p 92.1 1.2 2.6E-05 48.3 10.7 146 45-207 61-223 (546)
372 KOG2543 Origin recognition com 92.1 2.2 4.8E-05 44.1 12.1 154 46-229 10-177 (438)
373 PTZ00454 26S protease regulato 92.1 0.49 1.1E-05 50.2 8.0 55 20-77 139-196 (398)
374 PRK14969 DNA polymerase III su 92.1 0.75 1.6E-05 50.7 9.6 39 167-206 118-156 (527)
375 COG2804 PulE Type II secretory 92.1 0.25 5.5E-06 52.8 5.6 39 47-86 243-283 (500)
376 PF14516 AAA_35: AAA-like doma 92.0 1.4 3.1E-05 45.5 11.1 129 48-195 18-155 (331)
377 PRK04841 transcriptional regul 92.0 1.6 3.5E-05 51.6 13.1 44 168-211 121-164 (903)
378 TIGR02538 type_IV_pilB type IV 91.9 0.51 1.1E-05 52.5 8.2 44 38-85 295-340 (564)
379 PRK00440 rfc replication facto 91.9 1.3 2.9E-05 45.1 10.9 38 168-206 102-139 (319)
380 PRK14957 DNA polymerase III su 91.9 1.3 2.7E-05 48.9 11.1 40 166-206 117-156 (546)
381 PRK14965 DNA polymerase III su 91.8 0.69 1.5E-05 51.6 9.1 42 166-209 117-158 (576)
382 PRK05896 DNA polymerase III su 91.8 0.72 1.6E-05 51.1 9.0 42 167-210 118-159 (605)
383 TIGR00708 cobA cob(I)alamin ad 91.8 2.1 4.6E-05 39.6 10.8 54 166-219 95-150 (173)
384 PRK14952 DNA polymerase III su 91.8 1.9 4.1E-05 48.0 12.3 43 166-210 116-158 (584)
385 TIGR02533 type_II_gspE general 91.8 0.62 1.3E-05 50.8 8.4 45 37-85 220-266 (486)
386 PRK06645 DNA polymerase III su 91.7 1.5 3.3E-05 47.9 11.4 20 62-81 45-64 (507)
387 PRK14954 DNA polymerase III su 91.7 1 2.3E-05 50.4 10.3 40 166-206 125-164 (620)
388 TIGR03878 thermo_KaiC_2 KaiC d 91.7 0.79 1.7E-05 45.6 8.5 37 60-101 36-72 (259)
389 PRK11034 clpA ATP-dependent Cl 91.5 1.2 2.5E-05 51.3 10.7 45 169-213 279-327 (758)
390 cd01126 TraG_VirD4 The TraG/Tr 91.5 0.13 2.9E-06 54.3 3.0 48 62-116 1-48 (384)
391 TIGR02524 dot_icm_DotB Dot/Icm 91.5 0.44 9.6E-06 49.8 6.7 27 59-86 133-159 (358)
392 PF05621 TniB: Bacterial TniB 91.5 1.4 3E-05 44.4 9.9 40 168-208 145-188 (302)
393 PF02534 T4SS-DNA_transf: Type 91.4 0.2 4.3E-06 54.5 4.3 50 61-117 45-94 (469)
394 PRK14963 DNA polymerase III su 91.2 0.84 1.8E-05 50.0 8.7 16 63-78 39-54 (504)
395 COG3972 Superfamily I DNA and 91.2 0.65 1.4E-05 49.3 7.4 141 34-181 152-308 (660)
396 TIGR01243 CDC48 AAA family ATP 91.1 1.1 2.4E-05 51.7 10.2 54 21-77 173-229 (733)
397 PRK05563 DNA polymerase III su 91.0 1.8 3.8E-05 48.2 11.1 41 166-208 117-157 (559)
398 TIGR03689 pup_AAA proteasome A 90.9 0.61 1.3E-05 50.9 7.3 18 60-77 216-233 (512)
399 TIGR01243 CDC48 AAA family ATP 90.9 0.47 1E-05 54.7 6.8 18 61-78 488-505 (733)
400 PRK13897 type IV secretion sys 90.8 0.25 5.4E-06 55.1 4.3 57 61-128 159-215 (606)
401 cd01130 VirB11-like_ATPase Typ 90.8 0.74 1.6E-05 43.3 7.0 38 38-77 4-42 (186)
402 PRK03992 proteasome-activating 90.8 0.59 1.3E-05 49.5 6.9 18 61-78 166-183 (389)
403 PRK06067 flagellar accessory p 90.8 2.5 5.4E-05 41.2 10.9 52 60-117 25-76 (234)
404 COG0513 SrmB Superfamily II DN 90.7 1.1 2.4E-05 49.3 9.2 67 269-339 102-179 (513)
405 PF03237 Terminase_6: Terminas 90.6 3 6.6E-05 43.1 12.2 145 64-224 1-154 (384)
406 PRK14971 DNA polymerase III su 90.6 1.7 3.6E-05 48.9 10.6 41 166-208 119-159 (614)
407 PRK14959 DNA polymerase III su 90.5 0.81 1.8E-05 51.0 7.8 20 62-81 40-59 (624)
408 PRK14962 DNA polymerase III su 90.4 0.77 1.7E-05 49.8 7.5 17 63-79 39-55 (472)
409 PF01695 IstB_IS21: IstB-like 90.4 0.65 1.4E-05 43.4 6.2 45 58-108 45-89 (178)
410 TIGR00665 DnaB replicative DNA 90.4 1.9 4.2E-05 46.3 10.7 39 60-102 195-233 (434)
411 PRK08451 DNA polymerase III su 90.3 1.7 3.6E-05 47.8 10.0 40 166-206 115-154 (535)
412 PF01637 Arch_ATPase: Archaeal 90.3 0.21 4.5E-06 48.2 2.8 40 170-209 120-165 (234)
413 TIGR02858 spore_III_AA stage I 90.3 2.1 4.7E-05 42.8 10.1 25 53-77 101-128 (270)
414 PRK08840 replicative DNA helic 90.3 2.8 6.2E-05 45.4 11.7 131 42-181 199-342 (464)
415 PRK13764 ATPase; Provisional 90.3 0.44 9.6E-06 52.9 5.6 42 59-105 256-297 (602)
416 TIGR02525 plasmid_TraJ plasmid 90.2 0.7 1.5E-05 48.5 6.8 43 60-105 149-191 (372)
417 KOG0701 dsRNA-specific nucleas 90.2 0.18 3.8E-06 61.1 2.6 94 268-361 294-399 (1606)
418 KOG1133 Helicase of the DEAD s 90.2 18 0.00039 40.4 17.3 123 248-372 610-779 (821)
419 PRK09087 hypothetical protein; 90.2 1.1 2.5E-05 43.6 7.8 41 170-212 89-130 (226)
420 PRK13851 type IV secretion sys 90.0 0.56 1.2E-05 48.6 5.9 44 57-106 159-202 (344)
421 CHL00176 ftsH cell division pr 90.0 1 2.3E-05 50.6 8.4 18 61-78 217-234 (638)
422 PRK06305 DNA polymerase III su 90.0 2.1 4.5E-05 46.3 10.4 37 167-204 120-156 (451)
423 PRK07399 DNA polymerase III su 89.9 3 6.5E-05 42.8 11.0 40 167-208 123-162 (314)
424 PRK05748 replicative DNA helic 89.9 2.4 5.1E-05 45.9 10.8 38 60-101 203-240 (448)
425 PRK08506 replicative DNA helic 89.9 1.3 2.8E-05 48.2 8.7 112 60-181 192-315 (472)
426 KOG0737 AAA+-type ATPase [Post 89.7 0.29 6.4E-06 50.1 3.4 55 24-78 90-145 (386)
427 PRK14948 DNA polymerase III su 89.7 2.2 4.7E-05 48.1 10.5 21 61-81 39-59 (620)
428 KOG0741 AAA+-type ATPase [Post 89.6 3.5 7.6E-05 44.5 11.1 69 27-102 493-573 (744)
429 COG0541 Ffh Signal recognition 89.6 2.4 5.3E-05 44.6 10.0 130 63-220 103-235 (451)
430 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.5 1.9 4E-05 38.7 8.2 40 166-208 86-125 (144)
431 TIGR02639 ClpA ATP-dependent C 89.3 3.4 7.4E-05 47.6 12.1 18 61-78 204-221 (731)
432 COG1197 Mfd Transcription-repa 89.3 1.8 4E-05 50.8 9.7 90 250-339 627-721 (1139)
433 TIGR02397 dnaX_nterm DNA polym 89.2 2.5 5.5E-05 43.9 10.2 17 62-78 38-54 (355)
434 PF03969 AFG1_ATPase: AFG1-lik 89.1 5 0.00011 42.0 12.1 45 167-212 126-171 (362)
435 COG1219 ClpX ATP-dependent pro 89.0 0.31 6.7E-06 49.0 2.8 19 60-78 97-115 (408)
436 KOG1513 Nuclear helicase MOP-3 89.0 0.49 1.1E-05 52.7 4.6 169 45-221 264-469 (1300)
437 PRK00080 ruvB Holliday junctio 89.0 0.75 1.6E-05 47.5 5.9 18 61-78 52-69 (328)
438 PRK13900 type IV secretion sys 89.0 1.3 2.8E-05 45.9 7.5 45 57-107 157-201 (332)
439 TIGR00631 uvrb excinuclease AB 89.0 6.1 0.00013 44.8 13.5 112 92-214 441-558 (655)
440 TIGR02868 CydC thiol reductant 89.0 1.5 3.2E-05 48.5 8.6 35 166-200 486-520 (529)
441 PRK13695 putative NTPase; Prov 88.9 2 4.4E-05 39.7 8.2 17 62-78 2-18 (174)
442 TIGR00635 ruvB Holliday juncti 88.9 1.1 2.3E-05 45.7 7.0 18 61-78 31-48 (305)
443 COG2874 FlaH Predicted ATPases 88.8 4.4 9.6E-05 38.7 10.2 127 61-209 29-167 (235)
444 COG1618 Predicted nucleotide k 88.7 0.13 2.7E-06 46.7 -0.1 116 62-195 7-129 (179)
445 PRK08006 replicative DNA helic 88.7 4.1 9E-05 44.2 11.5 113 60-181 224-349 (471)
446 PF00437 T2SE: Type II/IV secr 88.6 0.36 7.9E-06 48.3 3.2 44 58-106 125-168 (270)
447 COG1222 RPT1 ATP-dependent 26S 88.6 0.8 1.7E-05 46.9 5.5 54 20-77 145-202 (406)
448 TIGR00416 sms DNA repair prote 88.6 1.6 3.4E-05 47.2 8.2 58 53-116 82-144 (454)
449 PRK07133 DNA polymerase III su 88.4 2.7 5.8E-05 47.8 10.1 43 166-210 116-158 (725)
450 TIGR03819 heli_sec_ATPase heli 88.4 1.2 2.5E-05 46.3 6.8 64 35-106 154-218 (340)
451 PF12846 AAA_10: AAA-like doma 88.4 0.71 1.5E-05 46.5 5.2 42 61-107 2-43 (304)
452 PRK08058 DNA polymerase III su 88.3 3.3 7.1E-05 42.8 10.1 41 166-207 108-148 (329)
453 PF04364 DNA_pol3_chi: DNA pol 88.2 1.7 3.8E-05 38.7 6.9 114 240-375 3-116 (137)
454 KOG0739 AAA+-type ATPase [Post 88.1 7.4 0.00016 39.1 11.5 126 55-229 156-298 (439)
455 TIGR00763 lon ATP-dependent pr 88.0 2 4.4E-05 49.8 9.2 19 60-78 347-365 (775)
456 KOG0733 Nuclear AAA ATPase (VC 88.0 1.4 3.1E-05 48.1 7.2 47 166-212 602-658 (802)
457 PRK13850 type IV secretion sys 87.9 0.39 8.5E-06 54.2 3.2 50 61-117 140-189 (670)
458 COG1110 Reverse gyrase [DNA re 87.8 2.1 4.6E-05 49.5 8.7 66 265-330 124-196 (1187)
459 PRK05564 DNA polymerase III su 87.8 3 6.5E-05 42.7 9.4 40 166-206 91-130 (313)
460 PHA00012 I assembly protein 87.8 7.6 0.00016 39.7 11.7 59 165-224 78-142 (361)
461 PRK07004 replicative DNA helic 87.7 2.4 5.2E-05 46.0 9.0 110 60-181 213-337 (460)
462 PF06733 DEAD_2: DEAD_2; Inte 87.6 0.25 5.3E-06 46.0 1.2 44 138-182 114-159 (174)
463 PHA03368 DNA packaging termina 87.5 2 4.2E-05 47.9 8.0 134 61-211 255-392 (738)
464 PRK08760 replicative DNA helic 87.4 2.6 5.6E-05 45.9 9.0 112 60-181 229-352 (476)
465 COG2255 RuvB Holliday junction 87.4 1.4 3.1E-05 43.8 6.2 27 151-182 91-117 (332)
466 TIGR01241 FtsH_fam ATP-depende 87.4 1.1 2.4E-05 49.1 6.3 17 61-77 89-105 (495)
467 CHL00095 clpC Clp protease ATP 87.4 1.2 2.7E-05 51.9 7.0 18 61-78 201-218 (821)
468 PF10412 TrwB_AAD_bind: Type I 87.1 0.67 1.5E-05 49.0 4.2 47 57-108 12-58 (386)
469 TIGR02655 circ_KaiC circadian 87.1 1.4 3.1E-05 48.1 6.9 60 52-117 250-314 (484)
470 TIGR03346 chaperone_ClpB ATP-d 87.1 5.9 0.00013 46.5 12.3 45 169-213 267-314 (852)
471 PRK14701 reverse gyrase; Provi 87.0 3.1 6.6E-05 51.9 10.2 61 265-325 121-187 (1638)
472 KOG0744 AAA+-type ATPase [Post 87.0 4.3 9.2E-05 41.2 9.3 113 60-184 177-325 (423)
473 COG1132 MdlB ABC-type multidru 86.9 3.9 8.4E-05 45.7 10.4 39 166-204 481-519 (567)
474 PF02572 CobA_CobO_BtuR: ATP:c 86.8 3.5 7.6E-05 38.2 8.2 56 164-219 92-149 (172)
475 PRK13876 conjugal transfer cou 86.8 0.51 1.1E-05 53.2 3.2 50 61-117 145-194 (663)
476 cd03276 ABC_SMC6_euk Eukaryoti 86.5 7.4 0.00016 36.9 10.7 46 166-211 129-177 (198)
477 PLN00020 ribulose bisphosphate 86.5 1.5 3.3E-05 45.6 6.1 17 61-77 149-165 (413)
478 PRK11776 ATP-dependent RNA hel 86.5 2.3 4.9E-05 46.2 8.0 70 267-340 73-153 (460)
479 KOG0331 ATP-dependent RNA heli 86.4 3.1 6.7E-05 45.2 8.7 73 91-174 339-415 (519)
480 KOG0333 U5 snRNP-like RNA heli 86.4 2.8 6.2E-05 44.9 8.2 70 93-173 517-590 (673)
481 PF10593 Z1: Z1 domain; Inter 86.4 2.3 5.1E-05 41.7 7.3 87 290-381 110-201 (239)
482 PRK04537 ATP-dependent RNA hel 86.3 4.2 9E-05 45.5 10.1 74 92-176 256-333 (572)
483 PRK06647 DNA polymerase III su 86.0 4.1 9E-05 45.3 9.8 41 166-208 117-157 (563)
484 PRK09165 replicative DNA helic 85.9 4.9 0.00011 44.1 10.2 116 61-181 218-354 (497)
485 TIGR03345 VI_ClpV1 type VI sec 85.9 3.3 7.2E-05 48.4 9.4 29 50-78 192-226 (852)
486 cd01128 rho_factor Transcripti 85.9 2.3 5E-05 42.0 7.0 20 57-76 13-32 (249)
487 TIGR03743 SXT_TraD conjugative 85.8 1.9 4.1E-05 48.6 7.1 54 61-119 177-232 (634)
488 KOG0060 Long-chain acyl-CoA tr 85.8 1 2.2E-05 49.0 4.6 49 166-218 586-634 (659)
489 PRK10865 protein disaggregatio 85.8 2.1 4.5E-05 50.2 7.7 18 61-78 200-217 (857)
490 cd03239 ABC_SMC_head The struc 85.7 1 2.3E-05 42.0 4.3 42 167-208 115-157 (178)
491 PRK06321 replicative DNA helic 85.6 7.1 0.00015 42.5 11.1 108 61-181 227-349 (472)
492 PRK05636 replicative DNA helic 85.6 4.1 8.9E-05 44.7 9.4 37 61-101 266-302 (505)
493 PRK13822 conjugal transfer cou 85.5 0.9 2E-05 51.1 4.4 58 61-129 225-282 (641)
494 PRK13880 conjugal transfer cou 85.5 0.74 1.6E-05 51.9 3.7 48 61-115 176-223 (636)
495 TIGR02767 TraG-Ti Ti-type conj 85.3 0.7 1.5E-05 51.8 3.3 50 61-117 212-261 (623)
496 cd01127 TrwB Bacterial conjuga 85.0 0.73 1.6E-05 49.2 3.2 50 54-108 36-85 (410)
497 PRK05595 replicative DNA helic 85.0 2.1 4.5E-05 46.3 6.7 39 60-102 201-239 (444)
498 PRK04328 hypothetical protein; 84.7 1.7 3.7E-05 43.0 5.5 52 60-117 23-74 (249)
499 PHA00350 putative assembly pro 84.7 2.3 5E-05 44.9 6.6 23 63-85 4-27 (399)
500 PRK14953 DNA polymerase III su 84.7 4.7 0.0001 44.0 9.3 41 166-208 117-157 (486)
No 1
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-99 Score=745.13 Aligned_cols=508 Identities=58% Similarity=0.869 Sum_probs=481.9
Q ss_pred hHHHHhhccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC
Q 008345 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP 90 (569)
Q Consensus 11 ~~~~~~~~~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~ 90 (569)
++..+++|++++|+|++|||+..++++|.+.||.+|||||+++||.||+++|++.+|.||||||+||++||+++|..+.
T Consensus 9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence 4777788888889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCee
Q 008345 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (569)
Q Consensus 91 ~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~ 170 (569)
..|.+++|++|||+||.|+.++++++++++++++++++||++++++|..+..++|||++|||+++++..+|. +.++.++
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sve 166 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVE 166 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee-cccccee
Confidence 679999999999999999999999999999999999999999999999999999999999999999999874 8999999
Q ss_pred EEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh
Q 008345 171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (569)
Q Consensus 171 ~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (569)
||||||+|++++|||.+++.+++.++|.++|+++||||+|+.+.+|+++++.+|..++++.++++++.++..|+.+++.+
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
|..+|++++..... ..+++|||+|++||+++...|...|+.+..+||.||++.|...+.+|+.++..+||+||+++||+
T Consensus 247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999988754 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHH
Q 008345 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (569)
Q Consensus 331 Dip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (569)
|||.+++|||||+|.+.+.|+||+||++|+|+.|++|++|.++|.+|+.+++.|+++++...+...+...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~---------- 395 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC---------- 395 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999988776644321
Q ss_pred HHhhcCCccccCCchhhhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHhcCCCCCCccccccCCCCCcC-CCccccccc
Q 008345 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV 489 (569)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~ 489 (569)
.+..++|..|+...+...++.+.+++.+.+++.+.+.+.++...|.++++.+|+||++|+|+++.. |+||.|...
T Consensus 396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~ 471 (529)
T KOG0337|consen 396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF 471 (529)
T ss_pred ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence 122589999999999999999999999999999999999999999999999999999999998876 999999999
Q ss_pred cccchhhHHHHHHHHHccCCccceeecccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008345 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552 (569)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (569)
++..|.+...|+.++++||+++||||++. + ++| ||.+++..|..++
T Consensus 472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~------------~---~~m--kr~k~~~ai~~rk 517 (529)
T KOG0337|consen 472 GENEEKEKLDILYKIKNYRSRETIFEINK------------S---DVM--KREKFEFAIIKRK 517 (529)
T ss_pred cchhhHHhhHHHHHHhhcccchhhhhhhh------------h---HHH--HhhhcchhHHHHH
Confidence 98888889999999999999999999973 1 389 8888888776554
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-79 Score=599.40 Aligned_cols=373 Identities=37% Similarity=0.617 Sum_probs=359.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
....+|.+||+++.+++++++.||+.||+||+++||.++.|+|||+.|.||||||.+|++|++++|.+.+. ...++||
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVL 135 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVL 135 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999998643 4789999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||||||.|+.+.++.++..+|+++++++||.++..|...+.+.|+|+|||||||++|+.+.+.+++..++++|+||||+
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
+++++|...+..|+..+|..+|++|||||||+.+..+..+.+.+|..+.........+.+.+.|..++...|...|++++
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll 295 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLL 295 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
.+. .+..+||||+|+..+++++-.|...|+.+..+||.|+|..|.-.+++|++|..+||||||+++||+|+|.+++||
T Consensus 296 ~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV 373 (476)
T KOG0330|consen 296 NEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV 373 (476)
T ss_pred Hhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE
Confidence 987 468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChH
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~ 396 (569)
|||+|.+.++|+||+||+||+|++|.+|++|+.-|+..+..+|.-+++++...+..+
T Consensus 374 NyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 374 NYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred ecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 999999999999999999999999999999999999999999999999987765544
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-75 Score=589.05 Aligned_cols=359 Identities=39% Similarity=0.640 Sum_probs=341.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcC
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSP 101 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~P 101 (569)
.+|++|+||.++++++..+||..|||||..+||..+.|+|++++|.||||||+||++|++++|...+.+ ...++|||+|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 389999999999999999999999999999999999999999999999999999999999999876543 4578999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|||||.|++.+.+.++.++++.+++++||.+...|...+..+|||||+|||||.+|+.+...++++++.++|+||||+|+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch---hhHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYM 258 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~k~~~L~~l 258 (569)
+.+|..++++|++.+|.++|++||||||+..+.+++...+++|+.+.++......+.+.+.|+.+++ .++...+..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987774 3466777777
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
+.... ...+|||+.|+..|..+.-+|.-.|+.+.-+||+|+|.+|...++.|++++++||||||+|+||+||+++..|
T Consensus 421 ~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 421 ITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 77764 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHH
Q 008345 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383 (569)
Q Consensus 339 I~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~ 383 (569)
|||++|.+.+.|+||+|||+|+|+.|.+++|+..+|...+..+-.
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik 543 (691)
T KOG0338|consen 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIK 543 (691)
T ss_pred EeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999988877643
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-74 Score=600.69 Aligned_cols=371 Identities=37% Similarity=0.612 Sum_probs=346.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhc----CCCCCeEEEEE
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALIL 99 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~----~~~~g~~~Lil 99 (569)
.|++++|++++.++++..||..|||||.++||.+++|+|+++.|.||||||++|++|++.++..+ ....++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999862 23458899999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||||||.|+...+.+|+....+++.|++||.+...|...+..+.+|+|||||||.++++. +.++++++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999997 789999999999999999
Q ss_pred cCCCChHHHHHHHHHhc-CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc--cccCCCceEEEEEcchhhHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
|++|||..++..|+..+ ++.+|++++|||+|..+..++..++.+|..+.+... .....++.+....|....|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 556689999999999999999999999988887643 355677888888899889999999
Q ss_pred HHHHHhc-CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 257 YMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 257 ~ll~~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
.+|.... ..++++||||+|++.|+.+...|...++.+..+||+.+|.+|..+++.|++|+..|||||||||||||+|+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998875 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
++|||||+|.+.++|+||+|||||+|++|.+++|++..+.....++...++......|..
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~ 470 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPD 470 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChH
Confidence 999999999999999999999999999999999999999998888888876665555443
No 5
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-73 Score=573.96 Aligned_cols=422 Identities=33% Similarity=0.559 Sum_probs=375.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhc--CCCCCeEEEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALIL 99 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~--~~~~g~~~Lil 99 (569)
...|++..||+.++++|.++||..+|++|..++|.++.|+|+++.|.||||||+||++|+++.+... ...++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3468999999999999999999999999999999999999999999999999999999999998753 23468899999
Q ss_pred cCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
|||||||.|++.+++++.++. ++.+..++||.+.....+.+.++++|+|+|||||++|+++.+.+-+.+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 9999999999999888888888999999999999999999888888999999999999
Q ss_pred ccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCC-Ceeeeeccccc--cCCCceEEEEEcchhhHHHHH
Q 008345 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 179 ~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~k~~~L 255 (569)
+++++||.+.+..|+..+|..+|++|||||+|+.+.++++..+.. |.++..+.... ....+.+.|+.++...++..+
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 999999999999999999999999999999999999999988764 77777765543 446889999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
+.+|++.... .++||||+|+..+.+++++|....++|..+||+.+|..|..+...|++.+..|||||||+|||+|+|+|
T Consensus 321 ~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 321 YTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 9999988653 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHhhc
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
+|||+||+|.++++|+||+|||||.|..|.+++++.|.|..++..+. ..|+...
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~----------------------- 453 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEF----------------------- 453 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCccc-----------------------
Confidence 99999999999999999999999999999999999999999998876 2222221
Q ss_pred CCccccCCchhhhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHhcCCCCCCccccccCCCCCc
Q 008345 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479 (569)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~~~~~~ 479 (569)
++|....+.....++.++..+. .+++.+..+|+.|...+..+|...+.....++.
T Consensus 454 ------e~~~~~~~~v~~~~~~li~~~y---~~~~aak~ay~syl~~y~s~slk~~~~~~~l~L 508 (543)
T KOG0342|consen 454 ------EFPPLKPEDVQSQLEKLISKNY---SLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLEL 508 (543)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHHh---hHHHHHHHHHHhhhhhccchhhhcccccchhhH
Confidence 2233333444555666666544 347789999999999999888888776554443
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-72 Score=606.96 Aligned_cols=365 Identities=41% Similarity=0.687 Sum_probs=341.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
..|++|+|++.++++|.++||..|||||.++||.++.|+|+++.|+||||||+||++|+++++..........+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999774311111129999999
Q ss_pred HHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
||||.|+++.+..++.+. ++++..++||.++..+...+..+++||||||||+++++.+ +.++++.+.++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhh
Confidence 999999999999999998 8999999999999999999988999999999999999998 47999999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc--cCCCceEEEEEcchhh-HHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEE-KHAALLYM 258 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~-k~~~L~~l 258 (569)
+|||.+++..|+..+|..+|+++||||+|..+..+++.++.+|..+.+..... ....+.+.++.+...+ |...|..+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~l 267 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888885555 7789999999999876 99999888
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
+... ...++||||+|++.++.++..|...|+.+..+||+|+|.+|..+++.|++|+.+||||||+++||||||++++|
T Consensus 268 l~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 268 LKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 8765 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhhccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCcc
Q 008345 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 339 I~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~~~~~~l~~~l~~~~~ 390 (569)
||||+|.+++.|+||+|||||+|++|.+++|+++. |...+..++..+++.+.
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999986 89999999998877644
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-72 Score=572.17 Aligned_cols=357 Identities=36% Similarity=0.616 Sum_probs=334.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhh--cCCCCCeEEEEEc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ--HVPQGGVRALILS 100 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~--~~~~~g~~~Lil~ 100 (569)
..|++|+|+..++++|++.+|..||.+|+++||..|.|+||++.|.||||||+||++|+++.|.. +....|..+|||+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIIS 148 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIIS 148 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEec
Confidence 46999999999999999999999999999999999999999999999999999999999999964 4556789999999
Q ss_pred CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||||||.|+++++.+.++++++.+++++||.........+ ++.+|+|||||||++|+.++..++.++++++|+||||++
T Consensus 149 PTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 149 PTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred chHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 9999999999999999999999999999999877665544 579999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc--cccCCCceEEEEEcchhhHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLYM 258 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~~l 258 (569)
++|||...+..|+..+|..+|++|||||.+.++.++++..+.+|.+|.+... ...+.++.+.|+.++..+|+..|+.+
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sF 307 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSF 307 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988633 45677899999999999999999999
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~ 336 (569)
|+.++ ..++|||++||+++.++++.|... |++...+||.|+|..|..++.+|-.....||+|||+++||+|+|.|+
T Consensus 308 I~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 308 IKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99884 589999999999999999999875 88899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHH-HHHHH
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY-LLDLH 382 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~-~~~l~ 382 (569)
|||++|+|.+..+|+||+||++|.+..|.++++++|.|..+ +..++
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998544 44443
No 8
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-72 Score=562.53 Aligned_cols=357 Identities=40% Similarity=0.630 Sum_probs=327.9
Q ss_pred CCCCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--CCC-eEE
Q 008345 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGG-VRA 96 (569)
Q Consensus 22 ~~~f~~l~--l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~~g-~~~ 96 (569)
..+|++++ |+++++.++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+..... .++ ..+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 35788886 5599999999999999999999999999999999999999999999999999999943321 222 579
Q ss_pred EEEcCcHHHHHHHHHHHHHhccc-CCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhh-cCCCCCCCeeEEE
Q 008345 97 LILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVV 173 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~-~~~~~l~~l~~iV 173 (569)
|||+|||||+.|+.+++..|... .++.+.+++||.+.++....+. ++++|+|||||||.+++.+ +..+++.+++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998766 7899999999999888776665 5899999999999999987 4456777999999
Q ss_pred EeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc--cCCCceEEEEEcchhhH
Q 008345 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEK 251 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~k 251 (569)
+||||++++|||...++.|++.+|..++|-|||||...++.+++++++.||..+.+..... .+..+...|..|++.+|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887776 66779999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 008345 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (569)
Q Consensus 252 ~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arG 329 (569)
...++++|... ...++|||++||..++|+...|... ......+||.|++.+|..+++.|++..-.+|+||||+|||
T Consensus 243 ~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999874 6789999999999999999999875 6678899999999999999999999888999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHH
Q 008345 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (569)
Q Consensus 330 lDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~ 380 (569)
||||++++||+||+|.++..|+||+|||||+|+.|.+++|+.|.|..|..-
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveF 371 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEF 371 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHH
Confidence 999999999999999999999999999999999999999999988877653
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-72 Score=540.65 Aligned_cols=372 Identities=36% Similarity=0.558 Sum_probs=346.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
+...+|+.|||++|+.+.|+.+|.+.|||+|..|||.|++|+|++++|.||||||++|.+|++++|.+++ .|.-++|+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP--~giFalvl 81 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP--YGIFALVL 81 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC--CcceEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999999999874 57889999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhc---CCCCCCCeeEEEEeC
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV---EDMSLKSVEYVVFDE 176 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~---~~~~l~~l~~iViDE 176 (569)
+||||||.|+.+.+.-+++..++++++++||.++-.+-..+..+|+++|+||||+-+++..+ -.+.+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999875 235689999999999
Q ss_pred CCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCC--CeeeeeccccccCCCceEEEEEcchhhHHHH
Q 008345 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (569)
||++++..|...+..+.+.+|..+|+++||||+++.+..+...-... ...+....+....+.+.+.|+.++...|...
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 99999999999999999999999999999999998887766655554 3444555566777899999999999999999
Q ss_pred HHHHHHHhcC-CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Q 008345 255 LLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (569)
Q Consensus 255 L~~ll~~~~~-~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip 333 (569)
|.++|+..-+ .+..++||++|+..|+.++..|....+.+..+||-|+|.+|...+.+|+++..+||||||||+||+|||
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 9999987655 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 334 ~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
.|++|||||+|.+|++|+||+||++|+|+.|.+++|+++.|+..+..+|...++++.+.+
T Consensus 322 ~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred ceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999999999999999999999999999999999887654
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-70 Score=512.19 Aligned_cols=373 Identities=35% Similarity=0.579 Sum_probs=350.7
Q ss_pred hccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEE
Q 008345 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (569)
Q Consensus 17 ~~~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~ 96 (569)
++-+...+|++|||++++++++...||+.|+.||+.|||.|+.|+||+++|..|+|||.+|.+.+++.+.-.. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--r~tQ~ 98 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--RETQA 98 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--ceeeE
Confidence 3446678999999999999999999999999999999999999999999999999999999988887765432 34689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
|||+||||||.|+.+.+..++.+.++.+..+.||.+..+....+..+.+++.|||||+++++.+ ..+....++++|+||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDE 177 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEecc
Confidence 9999999999999999999999999999999999999998888889999999999999999997 578899999999999
Q ss_pred CCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh-HHHHH
Q 008345 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAAL 255 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L 255 (569)
||.|++.||..++..+++.+|++.|++++|||+|.++.+..+.++.+|..+-+..+......+.+.|+.+..++ |.+.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999998876 99999
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
..+.... .-.+.+|||||++.++++.+.+++..+.+...||+|.|++|..++..||+|+.+|||+||+-|||+|+|.+
T Consensus 258 cdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 8887654 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~ 394 (569)
.+|||||+|.+.+.|+||+||.||.|++|.++.|+..+|+..+.+++.++...+.+.|.
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999887776654
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-69 Score=543.88 Aligned_cols=363 Identities=37% Similarity=0.597 Sum_probs=342.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-------CCCCe
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGV 94 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-------~~~g~ 94 (569)
-.+|++.|++..+++.+...||..|||||+++||..++.+|+|+.|.||||||++|++|++..+...+ ...|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 34799999999999999999999999999999999999999999999999999999999998775433 13589
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEE
Q 008345 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (569)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iVi 174 (569)
.++|++||||||.|+.+...+|++..+++++.++||.+.+++--.+..+|+|+|+|||+|.+.+.+ ..+-++++.++|+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEec
Confidence 999999999999999999999999999999999999999999778889999999999999999987 5788999999999
Q ss_pred eCCCccCCCChHHHHHHHHHhcCCC-------------------------CcEEEEEecCChHHHHHHHhcCCCCeeeee
Q 008345 175 DEADCLFGMGFAEQLHKILGQLSEN-------------------------RQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (569)
Q Consensus 175 DEah~l~~~~f~~~l~~i~~~~~~~-------------------------~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (569)
||||+|.+|||..++..++..+|.. +|+++||||||+.+..+++.++.+|..+.+
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vti 482 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTI 482 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEe
Confidence 9999999999999999999999741 699999999999999999999999999999
Q ss_pred ccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHH
Q 008345 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309 (569)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l 309 (569)
.......+.+.+.++.+..++|...|..+|.+. -..++|||+|+++.|+.+++.|.+.|+.+..+||+-+|++|+..+
T Consensus 483 g~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred ccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999999999999999999999999999876 467999999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 008345 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (569)
Q Consensus 310 ~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~ 387 (569)
+.|++|..+||||||+|+||||||+|.+|||||++.++.+|+||+|||||||+.|++++|+++.|-..++++...+..
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888766653
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-66 Score=550.93 Aligned_cols=368 Identities=33% Similarity=0.544 Sum_probs=338.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC-----CCCeEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-----QGGVRA 96 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~-----~~g~~~ 96 (569)
..+|++|||++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468999999999999999999999999999999999999999999999999999999999998865432 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
|||+||||||.|+++.+..+++..++++..++||.+.+.+...+..+++|+|+||++|.+++.. ..+.+++++++|+||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999999998888888999999999999999976 568899999999999
Q ss_pred CCccCCCChHHHHHHHHHhcCC--CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHH
Q 008345 177 ADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~ 254 (569)
||++++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.++.....+|...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999999985 56789999999999999999999999888887666666677777777777888888
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~ 334 (569)
|..++... ...++||||+|+..|+.+...|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||+|+|+
T Consensus 246 l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 246 LQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 88887654 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCC
Q 008345 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (569)
Q Consensus 335 v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~ 392 (569)
+++|||||+|.++..|+||+||+||+|+.|.+++|++++|...+..++.+++..+...
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999999999999999999999999999988888776543
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-67 Score=503.36 Aligned_cols=370 Identities=31% Similarity=0.531 Sum_probs=348.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
-+++.|+++.|..+++.++-++||+.|+|+|.++||.++.|+|+++.|..|+|||.+|.+|+++++... ....+++|+
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~il 159 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIIL 159 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEEE
Confidence 367899999999999999999999999999999999999999999999999999999999999998754 345789999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||||||.|+...++++++.+++++...+||.+..+..-.+....+++|+||||++++..+ +...+++..++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhh
Confidence 9999999999999999999999999999999999888777788999999999999999987 567899999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
+++..|...+..++..+|+++|++++|||+|-.+..|...++.+|..+.+-.+ -....+.+.|-.+....|...|-.++
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999998887544 34567888999999999999888887
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
.+. .-.+.|||||+...+|.++....+.|+.|.++|+.|-|+.|.+++..|++|.++.|||||...||+|++.+++||
T Consensus 318 skL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 318 SKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 765 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
|||+|.++++|+||+||+||.|..|.++.+++.+|...++++|..++.++.+.|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999887753
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.9e-65 Score=555.36 Aligned_cols=369 Identities=34% Similarity=0.573 Sum_probs=335.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC---CCCCeEEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~---~~~g~~~Li 98 (569)
-.+|++++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+.... ...++.+||
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999998876532 234788999
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
|+||||||.|+.+.++.|+...++++.+++||.....+...+..+++|+|+||++|.+++.. ....++++++|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEAD 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHH
Confidence 99999999999999999999899999999999999888888889999999999999999986 46779999999999999
Q ss_pred ccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCC-CCeeeeecccc-ccCCCceEEEEEcchhhHHHHHH
Q 008345 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 179 ~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
++++++|..++..++..+++.+|+++||||+|+.+..+++.++. +|..+.+.... .....+.+.+..+...+|...|.
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 99999999999999999999999999999999999999988875 56666554322 33456777888888888888898
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~ 336 (569)
.++......+.++||||+|+..|+.++..|...++.+..+||++++.+|..+++.|++|+++||||||+++||||+|+++
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 88887765678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
+|||||+|.++.+|+||+||+||+|+.|.+++|+++++...+.++...+......
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~ 502 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQP 502 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999988888777666544433
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.8e-64 Score=550.55 Aligned_cols=364 Identities=34% Similarity=0.607 Sum_probs=338.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.+|++|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~PT 83 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAPT 83 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeCc
Confidence 469999999999999999999999999999999999999999999999999999999999988643 235689999999
Q ss_pred HHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
++||.|+++.++.+.... ++.+..++||.+.+.+...+..+++|||+||+++++++.. ..++++++.+|||||||+++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml 162 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEML 162 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHHh
Confidence 999999999999887654 8999999999999999988889999999999999999986 56889999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~ 261 (569)
+++|...+..++..+|..+|+++||||+|+.+..+++.++.+|..+.+.......+.+.+.++.+....|...|..++..
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~ 242 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888776666667788888888888899999888865
Q ss_pred hcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEc
Q 008345 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (569)
Q Consensus 262 ~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~ 341 (569)
. ...++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++||||
T Consensus 243 ~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~ 320 (629)
T PRK11634 243 E--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNY 320 (629)
T ss_pred c--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEe
Confidence 4 45789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 342 d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
|+|.++..|+||+|||||+|+.|.+++|+.+.|...+..++..++..+..
T Consensus 321 d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~ 370 (629)
T PRK11634 321 DIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPE 370 (629)
T ss_pred CCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcce
Confidence 99999999999999999999999999999999999999998888876654
No 16
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-65 Score=518.75 Aligned_cols=446 Identities=28% Similarity=0.441 Sum_probs=358.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC----CCCe
Q 008345 20 SKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGV 94 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~----~~g~ 94 (569)
-++..|.+|||++.+...|.. +++..||.+|.++||.+++|+|+++.++||||||++|++|+++.|..... ..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 356789999999999999965 79999999999999999999999999999999999999999999976543 3689
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEE
Q 008345 95 RALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (569)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iV 173 (569)
-+|||+||||||.|+++.++++.+.. =+-.+.+.||+....+...+.++++|+|+|||||+||+.+...+.++++.++|
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999987653 34557789999999888999999999999999999999999999999999999
Q ss_pred EeCCCccCCCChHHHHHHHHHhc-------------CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc--------
Q 008345 174 FDEADCLFGMGFAEQLHKILGQL-------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-------- 232 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~-------------~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~-------- 232 (569)
|||+|+++++||...+..|+..+ |+..|.+|+|||++..+..++...+.+|..|.+|..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999999998876 234689999999999999999999999999984321
Q ss_pred -----------------cccCCCceEEEEEcchhhHHHHHHHHHHHhcC--CCCcEEEEEcChhhHHHHHHHHHHC----
Q 008345 233 -----------------TKISPDLKLAFFTLRQEEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (569)
Q Consensus 233 -----------------~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~--~~~~~IIF~~t~~~~~~l~~~L~~~---- 289 (569)
..+++++.+.|..+++.-+.-.|..+|.+... ...++|||+++++.|++-+.+|...
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 23455678889999999888888888876543 4568899999999999998888652
Q ss_pred ------------------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHH
Q 008345 290 ------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351 (569)
Q Consensus 290 ------------------~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~ 351 (569)
+.+...+||+|.|+.|..+++.|...+-.||+||||++||+|+|.|++||+||+|.++.+|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 23467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHhhcCCccccCCchhhhHHH
Q 008345 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (569)
Q Consensus 352 qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (569)
||+|||+|+|..|.++.|+.|.|..|+..++..-.. ...+..+..+.. .........+.-.++..-.+
T Consensus 533 HRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~--l~q~~~~~~l~~----------~~~~~~k~~~~e~~~~at~~ 600 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM--LLQFDMEILLPA----------FKPRKDKAKTKEWQERATTL 600 (708)
T ss_pred HHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch--hhccchhhhhhh----------cCcccccccchhhhhhHHHH
Confidence 999999999999999999999999988776543322 111111111111 00111111111111111122
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHhcCCCCCC--ccccccCCCCCcC
Q 008345 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS--KESIRRGKDLPRE 480 (569)
Q Consensus 432 ~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s--~~~~~~~~~~~~~ 480 (569)
+-.++.++. +...+++.+.+++..|.+.+.... ..+++.++.+-..
T Consensus 601 q~~~e~~~~---~~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lHlG 648 (708)
T KOG0348|consen 601 QLNLERLVV---GDEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLHLG 648 (708)
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhhhh
Confidence 223333333 345567788888888877665553 4456666655443
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-64 Score=551.37 Aligned_cols=371 Identities=36% Similarity=0.564 Sum_probs=340.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-----CCCCeEEE
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRAL 97 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-----~~~g~~~L 97 (569)
.+|++|+|++.++++|.++||..|||+|.++||.++.|+|+++.||||||||++|++|+++++.... ...+.++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4799999999999999999999999999999999999999999999999999999999999886532 12257899
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
||+||+||+.|+++.++.++...++++..++||.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999999888888899999999999999997655577899999999999
Q ss_pred CccCCCChHHHHHHHHHhcCC--CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHH
Q 008345 178 DCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 178 h~l~~~~f~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (569)
|++++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.++.+...++...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999987 789999999999999999999999887777666655566778888888888888888
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
+.++... .+.++||||+|++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++
T Consensus 249 ~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 249 LGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 8887643 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
++|||||+|.++..|+||+||+||.|+.|.+++|+++.+...+.+++.+++.++...+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999999988877655443
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.5e-64 Score=542.74 Aligned_cols=364 Identities=36% Similarity=0.608 Sum_probs=337.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+|++|+|++.++++|.++||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+.... .+.++||++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--FRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--CCceEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999999999986432 3568999999
Q ss_pred cHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
|+|||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+|||+|.+++.+ +.+.++++++|||||||++
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999987654 7999999999999999998999999999999999999986 5678999999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~ 260 (569)
++++|...+..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.++.+....|...+..++.
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876554 34558888888888889988888887
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~ 340 (569)
.. ...++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+||||||++++|+|+|++++|||
T Consensus 239 ~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 239 HH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred hc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 341 ~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
||+|.++..|+||+||+||+|+.|.+++|+.++|...+..++..++..+..
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999998888876554
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.4e-64 Score=538.96 Aligned_cols=363 Identities=37% Similarity=0.626 Sum_probs=333.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC----CCCeEEEEE
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALIL 99 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~----~~g~~~Lil 99 (569)
+|++|+|+++++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+.++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999865321 124589999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||++||.|+.+.++.+....++++..++||.+...+...+..+++|+|+||++|++++.. ..+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHH
Confidence 9999999999999999999999999999999999988888888999999999999998876 457899999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
+++++|...+..++..++..+|+++||||+++.+..++...+.+|..+.+.........+.+.+..+....+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666666667777777777777776666666
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
... ...++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++||
T Consensus 241 ~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 241 GKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 533 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCc
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~ 389 (569)
|||+|.++.+|+||+||+||+|..|.+++|+.++|...+.+++..+..++
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999998887765
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.4e-63 Score=541.09 Aligned_cols=369 Identities=32% Similarity=0.529 Sum_probs=334.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhc-----CCCCCeE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH-----VPQGGVR 95 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~-----~~~~g~~ 95 (569)
.-.+|++++|++.++++|.+.||..|||+|.++||.++.|+|+++.||||||||++|++|++..+... ....+++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~ 198 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPL 198 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCce
Confidence 34579999999999999999999999999999999999999999999999999999999999887532 1225789
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
+|||+||||||.|+.+.++.+++..++++..++||.....+...+..+++|+|+|||+|.+++.. ....++++.+||||
T Consensus 199 aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViD 277 (518)
T PLN00206 199 AMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLD 277 (518)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEee
Confidence 99999999999999999999998889999999999999998888888999999999999999986 46789999999999
Q ss_pred CCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHH
Q 008345 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 176 Eah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (569)
|||+|++++|..++..++..++ .+|+++||||+|+.+..++..++.++..+.+.........+.+.+..+....+...+
T Consensus 278 Ead~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l 356 (518)
T PLN00206 278 EVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKL 356 (518)
T ss_pred cHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHH
Confidence 9999999999999999999885 689999999999999999999999998888776666666677778888888888888
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH-CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~ 334 (569)
..++........++||||+|+..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||++++||||+|+
T Consensus 357 ~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~ 436 (518)
T PLN00206 357 FDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLR 436 (518)
T ss_pred HHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCccc
Confidence 888876544457899999999999999999975 6899999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 335 v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
+++|||||+|.+..+|+||+||+||+|..|.+++|+++++...+.++...++..-..
T Consensus 437 v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~ 493 (518)
T PLN00206 437 VRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAA 493 (518)
T ss_pred CCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999888888877766654333
No 21
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.8e-67 Score=508.75 Aligned_cols=363 Identities=35% Similarity=0.590 Sum_probs=333.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhh------cCCCCC
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ------HVPQGG 93 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~------~~~~~g 93 (569)
..-++|.+|.++..+++.|+++|+.+|||||.+.+|.+++|+|.++.|-||||||++|++|++-...+ .....|
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 34468999999999999999999999999999999999999999999999999999999999755432 234578
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcc------cCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 94 VRALILSPTRDLALQTLKFTKELGR------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~------~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
+-.||+||+||||.|+++.+..|.. ...+++.+++||.++.+|...+..+.+|+|+|||||.+++.. +.++++
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd 325 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLD 325 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHH
Confidence 9999999999999999998887753 346899999999999999999999999999999999999987 678899
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~ 247 (569)
-..|+.+||||+|.+|||..++..|+..+...+|++|||||||..+..|++..+-.|..+.+......+-++.+.+.+++
T Consensus 326 ~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk 405 (610)
T KOG0341|consen 326 ACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK 405 (610)
T ss_pred HHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877777877777888
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 248 ~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
.+.|.-.|+..|++. ..++||||..+..++.++++|--.|+.++.+||+-+|++|...++.|+.|+-+|||+||+++
T Consensus 406 qEaKiVylLeCLQKT---~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVAS 482 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKT---SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVAS 482 (610)
T ss_pred hhhhhhhHHHHhccC---CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchh
Confidence 888887777777654 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc-cHHHHHHHHHHhC
Q 008345 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLS 386 (569)
Q Consensus 328 rGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~~~~~~l~~~l~ 386 (569)
.|+|+|++.||||||+|.+++.|+||+|||||.|++|.+..|++.. +...+.++...+-
T Consensus 483 KGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~ 542 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQ 542 (610)
T ss_pred ccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999974 6677777755553
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-64 Score=495.19 Aligned_cols=373 Identities=34% Similarity=0.590 Sum_probs=331.4
Q ss_pred cCCCCCCCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC----CCCC
Q 008345 19 KSKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGG 93 (569)
Q Consensus 19 ~~~~~~f~~-l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~----~~~g 93 (569)
.....+|++ +...++++..|++.||..|||||.++||.+|+|.|+++.|+||+|||++|++|-+-.+...+ ...+
T Consensus 215 PnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~ 294 (629)
T KOG0336|consen 215 PNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNG 294 (629)
T ss_pred CCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCC
Confidence 355667865 46789999999999999999999999999999999999999999999999999887765433 2357
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEE
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iV 173 (569)
+.+|+++||||||.|+.-..+++. +.+++..+++||.+..++.+.+..+.+|+|+|||||.++... ...++.++.|+|
T Consensus 295 p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlV 372 (629)
T KOG0336|consen 295 PGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLV 372 (629)
T ss_pred CceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEE
Confidence 889999999999999998888874 568999999999999999999999999999999999998876 568899999999
Q ss_pred EeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc-cCCCceEEEEEcchhhHH
Q 008345 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKH 252 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~k~ 252 (569)
+||||+|++|||..++..|+-.+.+.+|+++.|||+|..+..++..++++|..+.+..-.- ....+.+.++.....+|.
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~ 452 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL 452 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH
Confidence 9999999999999999999999999999999999999999999999999998887654332 334566766555555666
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCC
Q 008345 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (569)
Q Consensus 253 ~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDi 332 (569)
. +...+.+......++||||+.+..++.|+.-|.-.|+....+||+-+|.+|+..++.|++|+++|||+||+++||+|+
T Consensus 453 ~-~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv 531 (629)
T KOG0336|consen 453 E-IVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV 531 (629)
T ss_pred H-HHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc
Confidence 4 444444556788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 008345 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 333 p~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~ 394 (569)
|+++||+|||+|.+++.|+||+||+||+|++|.+++|++.+|...+..+-..|.+.-+..|.
T Consensus 532 ~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 532 PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcH
Confidence 99999999999999999999999999999999999999999988888877777665555443
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.4e-62 Score=522.40 Aligned_cols=364 Identities=37% Similarity=0.610 Sum_probs=330.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--CCCeEEEEEcC
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSP 101 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~~g~~~Lil~P 101 (569)
+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6999999999999999999999999999999999999999999999999999999999999865322 23468999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|++++.. +.+.+.++++|||||||+++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999999988888888999999999999999886 56788999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCCh-HHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMI 259 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ll 259 (569)
+++|...+..+...++..+|+++||||++. .+..+....+.+|..+...........+.+.++.+.. ..+...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999985 5788888888899888777666556667777766654 45666666666
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
... ...++||||+|+++++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|+|+|++++||
T Consensus 241 ~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 241 KQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred hcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 532 467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCcc
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
|||+|.+...|+||+||+||+|..|.+++|+...|...+..++.++..++.
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999998887776554
No 24
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=493.11 Aligned_cols=373 Identities=36% Similarity=0.570 Sum_probs=338.4
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC---CCCCeE
Q 008345 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVR 95 (569)
Q Consensus 19 ~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~---~~~g~~ 95 (569)
.+.-.+|+.+|++..++.++...-|.+|||+|.+++|..+.|+||+..|.||||||.||+.|++..+.... ...|+-
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi 298 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPI 298 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCe
Confidence 34567899999999999999999999999999999999999999999999999999999999999887543 357899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
+||++||||||.|++.++++|++..|+++++++||-+..+|...+..++.|||||||||++++. ++..++.++.|+|||
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk-mKatn~~rvS~LV~D 377 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK-MKATNLSRVSYLVLD 377 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH-hhcccceeeeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999987 478999999999999
Q ss_pred CCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHH
Q 008345 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAA 254 (569)
Q Consensus 176 Eah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~ 254 (569)
|+|+|+++||..++..|..++++.+|+|+||||++..++.+++..|.+|+.+....-......+.+.+..+++ ..|..-
T Consensus 378 EadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~w 457 (731)
T KOG0339|consen 378 EADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNW 457 (731)
T ss_pred chhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876654434445567777777766 456777
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~ 334 (569)
|+..|-... ..+++|||+.-+..++.+...|...++.+..+||+++|.+|.+++.+|+.+...|||+||+++||+|||.
T Consensus 458 l~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 458 LLRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 777776553 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 335 v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
+..|||||+-.+++.|+||+||+||+|.+|.+|+++++.|..+.-.+-.-|.-.-+..|
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP 595 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVP 595 (731)
T ss_pred cceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCC
Confidence 99999999999999999999999999999999999999998776666555544444444
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-64 Score=508.04 Aligned_cols=366 Identities=34% Similarity=0.526 Sum_probs=324.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcC---------C
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHV---------P 90 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~---------~ 90 (569)
.-..|..|+|+.+++++|..+||..|||||..++|.+..| .|+++.|.||||||+||.|||++.+.... .
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3457889999999999999999999999999999999998 89999999999999999999999654322 1
Q ss_pred CCCeE--EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC--CCC
Q 008345 91 QGGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSL 166 (569)
Q Consensus 91 ~~g~~--~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~--~~l 166 (569)
..+++ +||++||||||.|+.+-+..++.++++++..++||.....|.+.+...|+|||+|||||+.++.+.+. -++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 23455 99999999999999999999999999999999999999999999999999999999999999988544 258
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcC-----CCCcEEEEEecCChH---------------------HHHHHHh-
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLPSA---------------------LAEFAKA- 219 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~-----~~~q~ll~SAT~~~~---------------------~~~~~~~- 219 (569)
+++.++|+||+|||.+.|+.+.+..++..+. ..+|++.||||++-. +..+++.
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~i 418 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKI 418 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHh
Confidence 8999999999999999999999999998875 368999999998321 2222222
Q ss_pred c-CCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecC
Q 008345 220 G-LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG 298 (569)
Q Consensus 220 ~-l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g 298 (569)
+ ..+|.++.+.........+....+.|+..+|...|+++|..+ .+++|||||+...+..+.-+|...++.+..+|.
T Consensus 419 g~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 419 GFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred CccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 2 346778887777777777777777888888888888887655 689999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHH
Q 008345 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378 (569)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~ 378 (569)
.|.|.+|...+++|++....|||||||||||+|||+|+|||+|..|.+.+.|+||.|||+||+..|.++.++.|.|+..+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCc
Q 008345 379 LDLHLFLSKPI 389 (569)
Q Consensus 379 ~~l~~~l~~~~ 389 (569)
..+..-|.+..
T Consensus 576 ~KL~ktL~k~~ 586 (731)
T KOG0347|consen 576 KKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHhhcc
Confidence 88887776543
No 26
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-63 Score=505.00 Aligned_cols=367 Identities=35% Similarity=0.562 Sum_probs=337.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--------C
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------Q 91 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--------~ 91 (569)
..-++|.+-.+.+.+...++..||..|||+|+.+||.+..|+|++++|+||||||+||++|++.++..... .
T Consensus 71 ~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~ 150 (482)
T KOG0335|consen 71 PHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGG 150 (482)
T ss_pred CCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCC
Confidence 34458888889999999999999999999999999999999999999999999999999999999875422 1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeE
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~ 171 (569)
..++++|++||||||.|+++..+++.....+++..++||.+...+...+..+++|+|+|||||.++++. +.+.++++++
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~ 229 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKF 229 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcE
Confidence 248899999999999999999999998999999999999999999999999999999999999999987 6789999999
Q ss_pred EEEeCCCccCC-CChHHHHHHHHHhcCC----CCcEEEEEecCChHHHHHHHhcCCC-CeeeeeccccccCCCceEEEEE
Q 008345 172 VVFDEADCLFG-MGFAEQLHKILGQLSE----NRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFT 245 (569)
Q Consensus 172 iViDEah~l~~-~~f~~~l~~i~~~~~~----~~q~ll~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~~~~~~~ 245 (569)
+|+||||+|++ |+|..++..|+..... .+|+++||||.|..+..++..++.+ +..+.+..-.....++.+.+..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeee
Confidence 99999999999 9999999999998754 7899999999999999999988886 8888888888888999999999
Q ss_pred cchhhHHHHHHHHHHHhcC--CC-----CcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 008345 246 LRQEEKHAALLYMIREHIS--SD-----QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (569)
Q Consensus 246 ~~~~~k~~~L~~ll~~~~~--~~-----~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ 318 (569)
+...+|...|+.+|..... .. ++++|||.|++.+.++...|...++++..+||.-.|.+|...+..|++|.+.
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 9999999999999986541 12 3899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 008345 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (569)
Q Consensus 319 ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~ 387 (569)
+||||+++|||+|+|+|+||||||+|.+..+|+||+|||||+|..|.+++|+...+......++.++..
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999997766666666655543
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-60 Score=516.42 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=334.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-----CCeEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-----GGVRA 96 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-----~g~~~ 96 (569)
..+|.+++|++.+.++|.++||..|||+|.++|+.++.|+|+++.++||||||++|++|+++.+...... .+.++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 3479999999999999999999999999999999999999999999999999999999999998764321 14689
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
|||+||++||.|+++.++.+.+..++.+..++||.+...+...+. ..++|+|+||++|++++.. ....++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEec
Confidence 999999999999999999999889999999999988877766664 5799999999999998876 45778999999999
Q ss_pred CCCccCCCChHHHHHHHHHhcCC--CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHH
Q 008345 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (569)
Q Consensus 176 Eah~l~~~~f~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 253 (569)
|+|.+++++|..++..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.++.+...++..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999999999999999999865 5799999999999999999999999988888777666677778888888888888
Q ss_pred HHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Q 008345 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (569)
Q Consensus 254 ~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip 333 (569)
.+..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 887777653 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCcc
Q 008345 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 334 ~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
++++||+||+|.+...|+||+||+||.|+.|.+++|++++|..++..++.++++++.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999998874
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-62 Score=483.11 Aligned_cols=364 Identities=34% Similarity=0.514 Sum_probs=327.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC----CCCCeEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRAL 97 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~----~~~g~~~L 97 (569)
..+|++|||.+.+++++.+.||..||-||..+||.+++|+|+++.|+||||||+||++|+++.|.... ...|+.++
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 35899999999999999999999999999999999999999999999999999999999999987532 24578999
Q ss_pred EEcCcHHHHHHHHHHHHHhcccC--CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 98 ILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
||+||+|||.|+++++.++..+. .+++.-+....+.......+...|+|+|+||++++.++.......++.++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 99999999999999988876553 4666666666666666677889999999999999999987444678999999999
Q ss_pred CCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccc-ccCCCceEEEEEcchhhHHHH
Q 008345 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAA 254 (569)
Q Consensus 176 Eah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~ 254 (569)
|||.++..||.+.+..+...+|+..|.+++|||+++.+..+-+.++.+|.++.+.... ..++.+.+.++.|...+|...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 9999999999999999999999999999999999999999999999999998876544 345688899999999999988
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec----------
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD---------- 324 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td---------- 324 (569)
++.+++-.+ -.+++|||+||.+.+..+.-.|...|++..+++|.|+...|--++++|..|-.+|+||||
T Consensus 258 lyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 258 LYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 888776443 358999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------cccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHH
Q 008345 325 -------------------------VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (569)
Q Consensus 325 -------------------------v~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~ 379 (569)
-++||||+.+|.+|+|||+|.++..|+||+|||||++++|.+++|+.|.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 2579999999999999999999999999999999999999999999999887666
Q ss_pred HHHHHhC
Q 008345 380 DLHLFLS 386 (569)
Q Consensus 380 ~l~~~l~ 386 (569)
.++.++.
T Consensus 417 ~le~~~~ 423 (569)
T KOG0346|consen 417 SLESILK 423 (569)
T ss_pred HHHHHHh
Confidence 6666554
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.5e-59 Score=493.72 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=329.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+|++|||++.++++|.+.||..|||+|.++|+.++.|+|+++.||||||||++|++|+++.+... ..+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999887543 23678999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|++|+.|+.+.+..++...++.+..++||.....++..+..+++|+|+||+++.+++.. ..+.++++++|||||||++.
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHH
Confidence 99999999999999998888999999999998888888888899999999999999886 45779999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIR 260 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ll~ 260 (569)
+.+|...+..++..++...|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888777665555455566666666654 335555555554
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~ 340 (569)
.. ...++||||+|+.+++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 264 ~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~ 341 (401)
T PTZ00424 264 TL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 341 (401)
T ss_pred hc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE
Confidence 33 3578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 341 ~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
||+|.+...|+||+||+||.|+.|.|++|+++++..++..++..+...+...+
T Consensus 342 ~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 342 YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred ECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999888877666544
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-60 Score=517.13 Aligned_cols=374 Identities=34% Similarity=0.599 Sum_probs=348.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC---CCCeE
Q 008345 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVR 95 (569)
Q Consensus 19 ~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~---~~g~~ 95 (569)
.+.-.+|.+.|++..++..++++||..|||||.+|||+|+.|+|||++|.||||||++|++|++.+...... ..|+-
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 345568999999999999999999999999999999999999999999999999999999999987765442 46899
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC--CCCCCeeEEE
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSLKSVEYVV 173 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~--~~l~~l~~iV 173 (569)
+||++|||||+.|+.++++.|.+.+++++++++||....++...+..++.|+||||||+++++-.+.. .++.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999998876322 3566677999
Q ss_pred EeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc-hhhHH
Q 008345 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKH 252 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~ 252 (569)
+||||+|++++|..++..|+..+++.+|+++||||+|..+..+++..+..|..+.+.........+.+.+..+. ..+|+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999 88999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCC
Q 008345 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (569)
Q Consensus 253 ~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDi 332 (569)
..|+.+|....+ ..++||||..+..|+.+.+.|.+.|+.+..+||+.+|..|..+++.|+++.+++||+|++++||+|+
T Consensus 601 ~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv 679 (997)
T KOG0334|consen 601 LKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV 679 (997)
T ss_pred HHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc
Confidence 999999998765 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 333 p~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
+.+.+|||||+|....+|+||+|||||+|++|.|++|+.+++..+..++..++...-.+.|
T Consensus 680 ~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 680 KELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred ccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 9999999999999999999999999999999999999999999999999888844333334
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-59 Score=456.77 Aligned_cols=365 Identities=35% Similarity=0.604 Sum_probs=343.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
+|++|+|++++++++...||+.|+.||+.||+.+..|.|+++.+++|+|||.+|.+++++.+... ....+|++++|||
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPtr 104 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPTR 104 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcchH
Confidence 89999999999999999999999999999999999999999999999999999999999987432 2346799999999
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 104 eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
|||.|+.++...++...+.++..++||.+...+...+. ..+.|+|+||||+++.+... .+....++++|+||+|.++.
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs 183 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLS 183 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhc
Confidence 99999999999999999999999999998885555444 56999999999999999874 78888899999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~ 262 (569)
.||.+++..|+..+|++.|++++|||+|+++....+.++.+|..+.+..+......+.+.|+.+..++|...|..+..
T Consensus 184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-- 261 (397)
T KOG0327|consen 184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-- 261 (397)
T ss_pred cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999888888899999999999999998888887
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcC
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d 342 (569)
.-.+.+|||||++.+..+...|...+..+..+||+|.|.+|..++..|+.|..+|||+|+.+|||+|+..+..||||+
T Consensus 262 --~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinyd 339 (397)
T KOG0327|consen 262 --RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYD 339 (397)
T ss_pred --hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeec
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 008345 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 343 ~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
.|.....|+||+||+||.|++|.++.+++..+...+.+++.|+..++.+.|..
T Consensus 340 lP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 340 LPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred cccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999999999999999999999999988877754
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-58 Score=449.06 Aligned_cols=361 Identities=31% Similarity=0.537 Sum_probs=323.0
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
.+|++|+|.++++++|..|||..|+.||..++|.++.. ++.|+++..|+|||+||++.|+.+..... .-++++.|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCLa 167 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICLA 167 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceeeC
Confidence 48999999999999999999999999999999999985 78999999999999999999999986543 346799999
Q ss_pred CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||||||.|+.+++.+.|++.++++...+.|.....- -.-..+|+|+|||.+++++.....+.+..++.+|+||||.|
T Consensus 168 PtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~M 244 (477)
T KOG0332|consen 168 PTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVM 244 (477)
T ss_pred chHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhh
Confidence 999999999999999999999999888877622110 01135799999999999999877788999999999999998
Q ss_pred CC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHHH
Q 008345 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYM 258 (569)
Q Consensus 181 ~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~l 258 (569)
++ .||.++-..|...+|.++|+++||||....+..|+...+.++..+.+..+....+++.+.|+.|.. .+|+.+|..+
T Consensus 245 i~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~l 324 (477)
T KOG0332|consen 245 IDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNL 324 (477)
T ss_pred hhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHH
Confidence 86 579999999999999999999999999999999999999999999999999889999999998886 5688888775
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
..-. .-+++||||.|++.+..++..+...|..+..+||+|.-.+|..+++.|+.|..+|||+|+|+|||||++.|++|
T Consensus 325 yg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~V 402 (477)
T KOG0332|consen 325 YGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVV 402 (477)
T ss_pred Hhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEE
Confidence 4322 45799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC------CChhHHHHHhhccccCCCccEEEEEecccc-HHHHHHHHHHhCCCcc
Q 008345 339 INWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIR 390 (569)
Q Consensus 339 I~~d~p------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e-~~~~~~l~~~l~~~~~ 390 (569)
||||+| +++++|+||+|||||.|+.|.++.++...+ +..+..++.+++..+.
T Consensus 403 vNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 403 VNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred EecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 999999 578999999999999999999999998764 4555677877765443
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.6e-56 Score=445.63 Aligned_cols=359 Identities=31% Similarity=0.461 Sum_probs=309.8
Q ss_pred CCCCCCCCHH----------HHHHHHHCCCCCChHHHHHHHHHHhc---------CCcEEEEcCCCchHHHHHHHHHHHH
Q 008345 24 GFESLNLSPN----------VFRAIKRKGYKVPTPIQRKTMPLILS---------GADVVAMARTGSGKTAAFLVPMLQR 84 (569)
Q Consensus 24 ~f~~l~l~~~----------~~~~l~~~g~~~~t~iQ~~~i~~il~---------g~dvl~~a~TGSGKT~a~lip~l~~ 84 (569)
.|+.+|++.. +..++..++.+..+|+|..++|.++. .+|+++.||||||||++|.+|+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 3566665554 44558999999999999999999864 4899999999999999999999999
Q ss_pred hhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcC-CC----CEEEECcHHHHHHHh
Q 008345 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NP----DIIIATPGRLMHHLS 159 (569)
Q Consensus 85 l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~-~~----~IiV~Tp~rl~~~l~ 159 (569)
|.....+ ..|++||+||++|+.|+++.++++...+|+.++.+.|..+.+.....+.+ .+ ||+|+|||||++|+.
T Consensus 208 L~~R~v~-~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPVK-RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCcc-ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 8876554 48999999999999999999999999999999999999999887777765 34 899999999999999
Q ss_pred hcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC----------------------------------CCcEEEE
Q 008345 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE----------------------------------NRQTLLF 205 (569)
Q Consensus 160 ~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~----------------------------------~~q~ll~ 205 (569)
+++.++|+++.++||||||||++..|..++..++..+.. ..+.++|
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 999999999999999999999988777777666554421 1246889
Q ss_pred EecCChHHHHHHHhcCCCCeeeeec----cccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHH
Q 008345 206 SATLPSALAEFAKAGLRDPHLVRLD----VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (569)
Q Consensus 206 SAT~~~~~~~~~~~~l~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~ 281 (569)
|||+...-..+...-+..|....+. .....+..+.+.++.+....+...+..++... +..++|+|+++...+..
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANR 444 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHH
Confidence 9999877777777788888666554 23445667778888888888888888888765 67899999999999999
Q ss_pred HHHHHH----HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhcc
Q 008345 282 LNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (569)
Q Consensus 282 l~~~L~----~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~ 357 (569)
++..|. ....++..+.|.+++..|...+..|+.|++++|||||+++||+|+.++++|||||+|.+..+|+||+|||
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 998887 3456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEeccccHHHHHHHHHHh
Q 008345 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFL 385 (569)
Q Consensus 358 gR~g~~G~~i~~v~~~e~~~~~~l~~~l 385 (569)
||||+.|.||.+++..+...|.++-...
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHh
Confidence 9999999999999999988887754433
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.7e-53 Score=475.29 Aligned_cols=361 Identities=21% Similarity=0.297 Sum_probs=282.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.++|.+. |++.+.++|.++||+.|||+|.++||.+++|+|+++.+|||||||+||++|+++.+... ++.++|||+|
T Consensus 14 ~~~~~~~-l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~P 89 (742)
T TIGR03817 14 TAPWPAW-AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAP 89 (742)
T ss_pred cCCCCCc-CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcC
Confidence 3444443 89999999999999999999999999999999999999999999999999999998763 4678999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC---CCCCCCeeEEEEeCCC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEAD 178 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~---~~~l~~l~~iViDEah 178 (569)
|||||.|+...++.++ ..++++..+.|+.+. .+...+..+++|+|+||++|...+.... ...++++++|||||||
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 9999999999999987 457888877777664 4445667789999999999875332110 0127899999999999
Q ss_pred ccCCCChHHHHHHHHH-------hcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc----
Q 008345 179 CLFGMGFAEQLHKILG-------QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---- 247 (569)
Q Consensus 179 ~l~~~~f~~~l~~i~~-------~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---- 247 (569)
.+.+. |...+..+++ ..+.++|++++|||+++... ++...++.|..+ ++.+..........++...
T Consensus 168 ~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~ 244 (742)
T TIGR03817 168 SYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTEL 244 (742)
T ss_pred hccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcccc
Confidence 99763 5555444443 34667899999999998754 677777777443 4333322222222222111
Q ss_pred -h-------hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--------CCCceeecCCCCHHHHHHHHHH
Q 008345 248 -Q-------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSR 311 (569)
Q Consensus 248 -~-------~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~l~~~~R~~~l~~ 311 (569)
. .........++...+..+.++||||+|++.++.++..|... +..+..+||++.+++|..++++
T Consensus 245 ~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 245 TGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred ccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0 00011222333333335789999999999999999887653 5678899999999999999999
Q ss_pred HhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecc--ccHHHHHHHHHHhCCCc
Q 008345 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS--EDMAYLLDLHLFLSKPI 389 (569)
Q Consensus 312 F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~--~e~~~~~~l~~~l~~~~ 389 (569)
|++|++++|||||++++|||||++++|||||+|.+...|+||+||+||+|+.|.+++++.. .|..++...+.+++.++
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~ 404 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPV 404 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999874 45556777777777765
Q ss_pred cC
Q 008345 390 RA 391 (569)
Q Consensus 390 ~~ 391 (569)
..
T Consensus 405 e~ 406 (742)
T TIGR03817 405 EA 406 (742)
T ss_pred cc
Confidence 44
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-53 Score=438.31 Aligned_cols=354 Identities=30% Similarity=0.489 Sum_probs=318.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
-..+|++|-|..+++.+|+..||..||++|..|||.++.+-|+|++|..|+|||++|.+.+++.|.... ...+++|++
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--~~~q~~Iv~ 100 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--SHIQKVIVT 100 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--CcceeEEEe
Confidence 346899999999999999999999999999999999999999999999999999999999998886543 346899999
Q ss_pred CcHHHHHHHHHHHHHhcc-cCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 101 PTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~-~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
||||+|.|+.+.+..++. +.|++|.+++||.........+ +.+.|+||||||+.+++.. ..++.+.+.++|+||||.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADK 178 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHh-cCCCccceeEEEeccHHh
Confidence 999999999999999875 5799999999999877665444 5688999999999999886 689999999999999999
Q ss_pred cCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchh--------h
Q 008345 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--------E 250 (569)
Q Consensus 180 l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~ 250 (569)
+.+ ..|..++..|+..+|..+|++.||||.|..+.+....+|.+|.+++...+....-.+.+.++.+.+. .
T Consensus 179 L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrl 258 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRL 258 (980)
T ss_pred hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHH
Confidence 998 5699999999999999999999999999999999999999999999988887777888888776553 2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
|...|-+++... +-.++||||+....|+-++.+|...|+.+.++.|.|+|.+|...++.+++-.++|||+||..+|||
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGI 336 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGI 336 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccC
Confidence 445555555443 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc-HHHHHH
Q 008345 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLD 380 (569)
Q Consensus 331 Dip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e-~~~~~~ 380 (569)
|-|++++|||.|.|.+..+|.||+||+||+|-.|.++.|+.... ...|..
T Consensus 337 Da~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~ 387 (980)
T KOG4284|consen 337 DADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTA 387 (980)
T ss_pred CccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHH
Confidence 99999999999999999999999999999999999999998753 344433
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.9e-52 Score=425.67 Aligned_cols=359 Identities=33% Similarity=0.478 Sum_probs=314.3
Q ss_pred CCCC----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC---CCCeEE
Q 008345 24 GFES----LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRA 96 (569)
Q Consensus 24 ~f~~----l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~---~~g~~~ 96 (569)
+|++ ...++.++..+...||..|+|+|.+++|.++.++|++++||||||||++|.+|++.+|..+.. ..|.++
T Consensus 133 ~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a 212 (593)
T KOG0344|consen 133 SFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRA 212 (593)
T ss_pred cccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEE
Confidence 5555 346888999999999999999999999999999999999999999999999999999987653 568999
Q ss_pred EEEcCcHHHHHHHHHHHHHhc--ccCCCeEEEEEcCCCHHHHHH-HHcCCCCEEEECcHHHHHHHhhcC-CCCCCCeeEE
Q 008345 97 LILSPTRDLALQTLKFTKELG--RYTDLRISLLVGGDSMESQFE-ELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYV 172 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~--~~~~l~~~~~~gg~~~~~~~~-~l~~~~~IiV~Tp~rl~~~l~~~~-~~~l~~l~~i 172 (569)
+|+.|||+|+.|++..+.++. ..+++++..+.......+... .....++|+|+||-++..++.... ..++..+.++
T Consensus 213 ~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~l 292 (593)
T KOG0344|consen 213 LILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWL 292 (593)
T ss_pred EEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeE
Confidence 999999999999999999998 667777766655433332211 222468999999999998887521 2678999999
Q ss_pred EEeCCCccCCC-ChHHHHHHHHHhcCC-CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-h
Q 008345 173 VFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-E 249 (569)
Q Consensus 173 ViDEah~l~~~-~f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~ 249 (569)
|+||+|++++. .|..++..|+..+.. ...+-+||||++..+++|+...+.++..+.+...+.....+.+..+.|.+ .
T Consensus 293 V~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~ 372 (593)
T KOG0344|consen 293 VVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEK 372 (593)
T ss_pred eechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecch
Confidence 99999999999 999999999988765 45677999999999999999999999999888887777778877766654 6
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHH-HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 008345 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (569)
Q Consensus 250 ~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L-~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ar 328 (569)
.|..++..++..-+ ..+++||+.+.+.+..+...| .-.++.+.++||..++.+|.+.+++||.|++.|||||++++|
T Consensus 373 ~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 373 GKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred hHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 78889989888764 579999999999999999999 567899999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHH
Q 008345 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (569)
Q Consensus 329 GlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~ 384 (569)
|+|+.+++.|||||+|.+.-.|+||+||+||+|+.|.+|.|++.+|++++..+...
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~ 506 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEV 506 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999988776543
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.9e-48 Score=418.76 Aligned_cols=324 Identities=20% Similarity=0.315 Sum_probs=257.5
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
..||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+||++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~~--- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKAS--- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHHc---
Confidence 359999999999999999999999999999999999999998753 346899999999999988877754
Q ss_pred CCCeEEEEEcCCCHHHHHHH----HcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCC--hHHHHHH-
Q 008345 120 TDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK- 191 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~--f~~~l~~- 191 (569)
++.+..+.++....++... ....++|+++||+++.........+ ...++++|||||||++++|| |...+..
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 5778888887776543322 2346899999999975432111112 46789999999999999887 4444433
Q ss_pred --HHHhcCCCCcEEEEEecCChHHHHHHHhc--CCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCC
Q 008345 192 --ILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267 (569)
Q Consensus 192 --i~~~~~~~~q~ll~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 267 (569)
+...+ ++.+++++|||+++.+....... +.+|..+..... .+++...... ........+..++... .++.
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~-~~~~ 227 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEVRR-KTPKILEDLLRFIRKE-FKGK 227 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEEEe-CCccHHHHHHHHHHHh-cCCC
Confidence 34444 46789999999999876544443 445655443222 2333222221 1123455666666543 2456
Q ss_pred cEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCCh
Q 008345 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347 (569)
Q Consensus 268 ~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~ 347 (569)
.+||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.++
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~ 307 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSM 307 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 348 ~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
..|+||+||+||.|..|.|++|+++.|...+..+
T Consensus 308 ~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~ 341 (470)
T TIGR00614 308 ESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341 (470)
T ss_pred HHHHhhhcCcCCCCCCceEEEEechhHHHHHHHH
Confidence 9999999999999999999999999988776664
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-47 Score=427.80 Aligned_cols=337 Identities=22% Similarity=0.296 Sum_probs=263.7
Q ss_pred CCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 27 SLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 27 ~l~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
.++++..+...++. .||..++|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..+|||+|+++|
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVISPLiSL 512 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSL 512 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEEeCHHHH
Confidence 35566667666654 69999999999999999999999999999999999999999853 2359999999999
Q ss_pred HHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc------CCCCEEEECcHHHHH---HHhhcCCC-CCCCeeEEEEe
Q 008345 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA------QNPDIIIATPGRLMH---HLSEVEDM-SLKSVEYVVFD 175 (569)
Q Consensus 106 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~------~~~~IiV~Tp~rl~~---~l~~~~~~-~l~~l~~iViD 175 (569)
+.+....+.. .++.+..+.++....++...+. ..++|+++||++|.. ++.....+ ....+.+||||
T Consensus 513 mqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 513 IQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 9854443433 3689999999988777655443 468999999999852 12211112 13458899999
Q ss_pred CCCccCCCC--hHHHHHH--HHHhcCCCCcEEEEEecCChHHHHHHHhcCC--CCeeeeeccccccCCCceEEEEEcchh
Q 008345 176 EADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQE 249 (569)
Q Consensus 176 Eah~l~~~~--f~~~l~~--i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~ 249 (569)
|||++++|| |...... ++....+..|++++|||++..+...+...+. ++..+... ...+++ .|..++..
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpNL--~y~Vv~k~ 663 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPNL--WYSVVPKT 663 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccce--EEEEeccc
Confidence 999999998 5554443 2344445788999999999988875555443 33332221 122333 33333333
Q ss_pred hH-HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 008345 250 EK-HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (569)
Q Consensus 250 ~k-~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ar 328 (569)
.+ ...+..++.... .+...||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|.+|+++|||||+++++
T Consensus 664 kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 664 KKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred hhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 22 345556665432 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 329 GlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
|||+|+|++||||++|.+++.|+||+|||||.|..|.|++|+.+.|+..+..+
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887655543
No 39
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-49 Score=366.12 Aligned_cols=333 Identities=30% Similarity=0.535 Sum_probs=291.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
++.+|.++-|.+++++++-..||+.|+.+|.+|||...-|.|++++|..|.|||++|++..++++..-. ....+|++|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--g~vsvlvmc 117 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--GQVSVLVMC 117 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC--CeEEEEEEe
Confidence 567999999999999999999999999999999999999999999999999999999999998886542 346799999
Q ss_pred CcHHHHHHHHHHHHHhccc-CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 101 PTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
.|||||.|+.+.+.+|+++ .++++++++||.+.....+.+.+-|+|+||||||++.+..+ +.+++++++.+|+||||.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDK 196 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHH
Confidence 9999999999999999987 58999999999999988888889999999999999998887 689999999999999999
Q ss_pred cCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccccc-CCCceEEEEEcchhhHHHHHHH
Q 008345 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPDLKLAFFTLRQEEKHAALLY 257 (569)
Q Consensus 180 l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~k~~~L~~ 257 (569)
|++ .+...++++|++..|...|+++||||+++++...++.++.+|..+.++.+.+. ...+++.|+.....+|...+..
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 885 45788999999999999999999999999999999999999999988877654 4578888999998888888888
Q ss_pred HHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE
Q 008345 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~ 337 (569)
+|... .-.+++||+.+... +. | +.+ ||+|++..||+||-.++.
T Consensus 277 LLd~L--eFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 277 LLDVL--EFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhh--hhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCccccee
Confidence 88654 46799999987654 00 3 223 899999999999999999
Q ss_pred EEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccH-HHHHHHHHHhCCCccCCC
Q 008345 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 338 VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~-~~~~~l~~~l~~~~~~~~ 393 (569)
|+|||.|.++++|+||+||+||.|.+|.++.|++..+. ..+..+...+...+...|
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 99999999999999999999999999999999997643 344444444444444333
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.7e-46 Score=415.42 Aligned_cols=332 Identities=21% Similarity=0.328 Sum_probs=262.9
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 29 ~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
++.......|++ .||..|+|+|.++++.++.|+|+++.+|||||||++|++|++.. +..+||++|+++|+.
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMK 79 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHH
Confidence 444455555654 59999999999999999999999999999999999999999854 235899999999999
Q ss_pred HHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH---H-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC
Q 008345 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 108 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~ 183 (569)
|+.+.++.+ ++.+..+.++.+.+..... + ....+++++||+++...... ..+...++++|||||||+++++
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccc
Confidence 988887765 5777788887776654332 2 24688999999998732111 1244567899999999999988
Q ss_pred C--hHH---HHHHHHHhcCCCCcEEEEEecCChHHHHHHHh--cCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHH
Q 008345 184 G--FAE---QLHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 184 ~--f~~---~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
| |.. .+..+...+ +..+++++|||+++........ .+.+|....... ..+++ .+..+....+...++
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchHHHHH
Confidence 7 433 344444444 4688999999999877654333 344554433211 12233 333333444555666
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~ 336 (569)
..+... .+.++||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 229 ~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 229 RYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 666543 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
+||+||+|.+...|+||+||+||.|.+|.|++|+++.|...+..+
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999988766554
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-46 Score=425.78 Aligned_cols=337 Identities=24% Similarity=0.306 Sum_probs=261.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|++|+|++.+++++.+.||..|+|+|.+|++. +++|+|++++||||||||++|.+|++..+.. +.++||++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P~ 76 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVPL 76 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeCh
Confidence 589999999999999999999999999999998 7789999999999999999999999998852 5679999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
++|+.|+++.++.++. .++++..++|+...... ....++|+|+||+++..++.+ ....+.++++||+||+|.+.+
T Consensus 77 raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 77 RALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCC
Confidence 9999999999888764 48999999998754432 235689999999999888875 234478999999999999998
Q ss_pred CChHHHHHHHHHhc---CCCCcEEEEEecCCh--HHHHHHHhcCCC----Ceeeeecc--ccccCCCceEEEEEcchhhH
Q 008345 183 MGFAEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLRD----PHLVRLDV--DTKISPDLKLAFFTLRQEEK 251 (569)
Q Consensus 183 ~~f~~~l~~i~~~~---~~~~q~ll~SAT~~~--~~~~~~~~~l~~----~~~i~~~~--~~~~~~~~~~~~~~~~~~~k 251 (569)
.++...+..++.++ ++..|++++|||+++ .+.+|....... |..+.... ............ +....+
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~--~~~~~~ 229 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE--VEVPSK 229 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccccc--CCCccc
Confidence 88877777665554 567899999999976 333333321111 11111000 000000000000 111111
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC------------------------------------CCcee
Q 008345 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG------------------------------------LEPSV 295 (569)
Q Consensus 252 ~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~------------------------------------~~~~~ 295 (569)
......+.+.+..++++||||+|+++++.++..|.... ..+.+
T Consensus 230 -~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 230 -DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred -hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 22333444444567899999999999998887775421 35788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cC-----CCCChhHHHHHhhccccCCCc--c
Q 008345 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-----FPPKPKIFVHRVGRAARAGRT--G 364 (569)
Q Consensus 296 i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d-----~p~s~~~~~qrvGR~gR~g~~--G 364 (569)
+||+|++.+|..+++.|++|.++|||||+++++|+|+|..++||+ || .|.+..+|.||+|||||.|.. |
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G 388 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYG 388 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999997 66 588999999999999999876 9
Q ss_pred EEEEEeccc
Q 008345 365 TAFSFVTSE 373 (569)
Q Consensus 365 ~~i~~v~~~ 373 (569)
.+++++.+.
T Consensus 389 ~~ii~~~~~ 397 (737)
T PRK02362 389 EAVLLAKSY 397 (737)
T ss_pred eEEEEecCc
Confidence 999998765
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.8e-46 Score=409.77 Aligned_cols=315 Identities=19% Similarity=0.220 Sum_probs=249.3
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEE-EEcCcHHHHHHHHHHHHHhcc
Q 008345 41 KGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL-ILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~-dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~L-il~PtreLa~Q~~~~~~~~~~ 118 (569)
.||+ |||||.+++|.++.|+ ++++.+|||||||++|.++.+.. ... ...++.| +++|||||+.|+++.++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--ccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4999 9999999999999998 58888999999999776555532 111 1234455 477999999999999999887
Q ss_pred cC-----------------------CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-----------
Q 008345 119 YT-----------------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM----------- 164 (569)
Q Consensus 119 ~~-----------------------~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~----------- 164 (569)
.. ++++..++||.+...++..+..+++|||||+ +++.+ ..+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~s-r~L~~gYg~~~~~~ 162 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGS-RLLFSGYGCGFKSR 162 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcC-Cccccccccccccc
Confidence 54 5889999999999999999999999999995 44443 233
Q ss_pred -----CCCCeeEEEEeCCCccCCCChHHHHHHHHHhc--CCC---CcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc
Q 008345 165 -----SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (569)
Q Consensus 165 -----~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~--~~~---~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~ 234 (569)
.+++++++|+|||| ++++|...+..|++.+ +.. +|+++||||+|..+..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999975 432 69999999999988888877777776665544333
Q ss_pred cCCCceEEEEEcchhhHHHHHHHHHHHh-cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHH-----HH
Q 008345 235 ISPDLKLAFFTLRQEEKHAALLYMIREH-ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK-----IH 308 (569)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~-----~~ 308 (569)
....+.+ ++.+....+...++..+... ...++++||||||++.++.+++.|...++ ..+||+|++.+|. .+
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 3334443 44555555554444433222 23467899999999999999999998876 8999999999999 78
Q ss_pred HHHHhc----CC-------ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCcc-EEEEEecc
Q 008345 309 VSRFRA----RK-------TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG-TAFSFVTS 372 (569)
Q Consensus 309 l~~F~~----g~-------~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G-~~i~~v~~ 372 (569)
++.|++ |. ..||||||++++||||+. ++||++..| .+.|+||+||+||+|+.| ..+.++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999987 43 689999999999999997 899997766 589999999999999864 44555543
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=421.10 Aligned_cols=338 Identities=24% Similarity=0.301 Sum_probs=254.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC----CCCeEEEEEcCcHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALILSPTRDL 105 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~----~~g~~~Lil~PtreL 105 (569)
|++.+.+.+.+ +|..|||+|.+++|.+++|+|+++.||||||||++|++|+++.+..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 8999999999999999999999999999999999999999998865321 346789999999999
Q ss_pred HHHHHHHHHH-------h----cccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC--CCCCeeE
Q 008345 106 ALQTLKFTKE-------L----GRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--SLKSVEY 171 (569)
Q Consensus 106 a~Q~~~~~~~-------~----~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~--~l~~l~~ 171 (569)
+.|+++.+.. + +... ++++...+|+.+.......+.+.++|+|+||++|..++.. ..+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~-~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS-PKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC-hhHHHHHhcCCE
Confidence 9999875442 2 2233 7889999999988887777788999999999999877754 222 4789999
Q ss_pred EEEeCCCccCCCChHHHHHH----HHHhcCCCCcEEEEEecCCh--HHHHHHHhcCC--CCeee-eeccccccCCCceEE
Q 008345 172 VVFDEADCLFGMGFAEQLHK----ILGQLSENRQTLLFSATLPS--ALAEFAKAGLR--DPHLV-RLDVDTKISPDLKLA 242 (569)
Q Consensus 172 iViDEah~l~~~~f~~~l~~----i~~~~~~~~q~ll~SAT~~~--~~~~~~~~~l~--~~~~i-~~~~~~~~~~~~~~~ 242 (569)
|||||+|.+.+..+...+.. +....+...|++++|||+++ .+..+...... .+..+ .++... .......
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC--CccceEE
Confidence 99999999997665444433 33334467899999999976 23333322111 11111 111111 1111111
Q ss_pred EE-------EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC------CCCceeecCCCCHHHHHHHH
Q 008345 243 FF-------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHV 309 (569)
Q Consensus 243 ~~-------~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~l~~~~R~~~l 309 (569)
.. ..........+...+.+.+..+.++||||+|+..++.++..|... +..+..+||+|++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 11 111222334455566655566789999999999999999998863 46789999999999999999
Q ss_pred HHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCC-CccEEEEEec
Q 008345 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG-RTGTAFSFVT 371 (569)
Q Consensus 310 ~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g-~~G~~i~~v~ 371 (569)
+.|++|+++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999874 3344444443
No 44
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.5e-45 Score=414.86 Aligned_cols=338 Identities=22% Similarity=0.283 Sum_probs=265.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|+++++++.+.+.++++||..|+|+|.++++. ++.|+|++++||||||||++|.+|++..+.. .+.++|||+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeCh
Confidence 688999999999999999999999999999986 7899999999999999999999999988765 25689999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
++|+.|+++.++.+. ..++++..++|+...... +..+++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCC
Confidence 999999999888775 358999999998765432 235789999999999888765 334578999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCC---c-eEEEEEcchh--hH-HHHH
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD---L-KLAFFTLRQE--EK-HAAL 255 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~---~-~~~~~~~~~~--~k-~~~L 255 (569)
.++...+..++.+++...|++++|||+++. .+++. +++..... . .....+. + ...+...... .+ ....
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~-~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV-S--DWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc-C--CCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 888999999999999999999999999763 44444 33322111 1 1111010 0 0111111111 11 1223
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH---------------------------------CCCCceeecCCCCH
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---------------------------------EGLEPSVCYGDMDQ 302 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~---------------------------------~~~~~~~i~g~l~~ 302 (569)
...+.+.+..+.++||||+|++.++.++..|.. ....+.++||+|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 334444445678999999999999877655532 12347899999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE-------cCCCC-ChhHHHHHhhccccCC--CccEEEEEecc
Q 008345 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------WDFPP-KPKIFVHRVGRAARAG--RTGTAFSFVTS 372 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~-------~d~p~-s~~~~~qrvGR~gR~g--~~G~~i~~v~~ 372 (569)
++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+||+||.| ..|.+++++..
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999993 55554 4568999999999975 56999999987
Q ss_pred ccH
Q 008345 373 EDM 375 (569)
Q Consensus 373 ~e~ 375 (569)
++.
T Consensus 388 ~~~ 390 (720)
T PRK00254 388 EEP 390 (720)
T ss_pred cch
Confidence 653
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-44 Score=409.88 Aligned_cols=322 Identities=21% Similarity=0.243 Sum_probs=259.0
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 29 ~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+...+..+.+ .||+ |||+|.+||+.++.+ +|.+++|+||||||.+|+.|++..+.. |.+++||+|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 445666666654 6996 999999999999885 799999999999999999999988753 578999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH---HHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
|++||.|+++.++++....++++..++|+.+..++.. .+. +.++||||||. ++ . ..+.+++++++||||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll---~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-LL---Q--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-Hh---h--CCCCcccCCEEEeecc
Confidence 9999999999999887778899999998877554333 333 36999999994 32 2 3577899999999999
Q ss_pred CccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 008345 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (569)
Q Consensus 178 h~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (569)
|++ .......+..++.+.|+++||||+++........+..++..+....... ..+...+..... ..+..
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~ 651 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVRE 651 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHH
Confidence 993 3344566777888899999999987776666666777777665543321 123333322221 22223
Q ss_pred HHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
.+...+..+++++|||+++++++.+++.|... ++.+..+||.|++.+|..++.+|++|+++|||||+++++|+|+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 33333446789999999999999999999884 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-ChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 336 DNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 336 ~~VI~~d~p~-s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
++||+++.|. +...|.||+||+||.|+.|.||+++.+.
T Consensus 732 ~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 732 NTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999864 5778999999999999999999998764
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.8e-45 Score=403.06 Aligned_cols=324 Identities=23% Similarity=0.342 Sum_probs=261.7
Q ss_pred HHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 37 AIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 37 ~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
.|++ .||..++|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..++|++|+++|+.|..+.++.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~ 75 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRA 75 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHH
Confidence 3443 69999999999999999999999999999999999999998743 23589999999999998888877
Q ss_pred hcccCCCeEEEEEcCCCHHHHHHH----HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC--hHH--
Q 008345 116 LGRYTDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAE-- 187 (569)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~--f~~-- 187 (569)
+ ++.+..+.++.+..+.... ..+..+|+++||+++...... ..+...++++|||||||.++++| |..
T Consensus 76 ~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 76 A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 5 5788888888877654432 235789999999998643221 23456789999999999999877 443
Q ss_pred -HHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCC--CCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcC
Q 008345 188 -QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264 (569)
Q Consensus 188 -~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~ 264 (569)
++..+...+|. .+++++|||+++.+...+...+. ++..+.. ....+++ .+.......+...+...+...
T Consensus 151 ~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl--~~~v~~~~~~~~~l~~~l~~~-- 222 (591)
T TIGR01389 151 QRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNL--RFSVVKKNNKQKFLLDYLKKH-- 222 (591)
T ss_pred HHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCc--EEEEEeCCCHHHHHHHHHHhc--
Confidence 34444555554 45999999999887765555443 4433321 1112223 333344455667777777654
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p 344 (569)
.+.++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|.+|+++|||||+++++|||+|++++||+|++|
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p 302 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMP 302 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 345 ~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
.+...|.|++||+||.|..|.|++++++.|...+..+
T Consensus 303 ~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 303 GNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 9999999999999999999999999999887766543
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.5e-43 Score=407.41 Aligned_cols=319 Identities=19% Similarity=0.197 Sum_probs=256.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 31 ~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
+.+..+.....+|. |||+|.+||+.++.+ +|++++|+||||||.+|+.+++..+. .|.+++||+||++
T Consensus 587 ~~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~e 660 (1147)
T PRK10689 587 REQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHH
Confidence 45556666888995 999999999999987 89999999999999999988876653 3788999999999
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||.|+++.+++.....++++..++|+.+..++...+. ++++|+||||+.+. ..+.+++++++||||+|++
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCCCHhhCCEEEEechhhc
Confidence 9999999998866666889999999988877665443 47999999997432 3467889999999999996
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~ 260 (569)
|+. ..+.+..++.++|+++||||+++....++..++.++..+....... ..+...+...........++.
T Consensus 735 ---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~il~--- 804 (1147)
T PRK10689 735 ---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREAILR--- 804 (1147)
T ss_pred ---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHHHHH---
Confidence 332 3456677888999999999998887788888888888776544322 223333332222111122222
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
.+..+++++||||++..++.+++.|... +..+..+||+|++.+|..++.+|++|+++|||||+++++|+|+|++++|
T Consensus 805 -el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~V 883 (1147)
T PRK10689 805 -EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 (1147)
T ss_pred -HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEE
Confidence 2234689999999999999999999887 7789999999999999999999999999999999999999999999999
Q ss_pred EEcCC-CCChhHHHHHhhccccCCCccEEEEEecc
Q 008345 339 INWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (569)
Q Consensus 339 I~~d~-p~s~~~~~qrvGR~gR~g~~G~~i~~v~~ 372 (569)
|..+. ..+...|.||+||+||.|+.|.||+++.+
T Consensus 884 Ii~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 94432 13456799999999999999999988854
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.7e-43 Score=392.09 Aligned_cols=318 Identities=20% Similarity=0.255 Sum_probs=246.3
Q ss_pred HHHHHHH-HHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 32 PNVFRAI-KRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 32 ~~~~~~l-~~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
..+.+.+ ...+|. ||++|.++++.|..+ .+++++|+||||||++|++|++..+. .|.+++|++||++
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~ 321 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEI 321 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHH
Confidence 3444444 567996 999999999999886 47999999999999999999998774 3778999999999
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHH---HHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~---~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||.|+++.++++....++++..++|+.+..+. ...+. +.++|+||||+.+.+ ...+.+++++|+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh
Confidence 99999999999988889999999999986443 33343 369999999987752 355789999999999995
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~ 260 (569)
. ......+......+++++||||+.+....+...+..++.. ++........+...+. . ..+...++..+.
T Consensus 396 g-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~--i~~~p~~r~~i~~~~~--~-~~~~~~~~~~i~ 465 (681)
T PRK10917 396 G-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSV--IDELPPGRKPITTVVI--P-DSRRDEVYERIR 465 (681)
T ss_pred h-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEE--EecCCCCCCCcEEEEe--C-cccHHHHHHHHH
Confidence 2 2233344455567899999999866544333322223322 2211111122333322 2 223344556666
Q ss_pred HhcCCCCcEEEEEcCh--------hhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 261 EHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~--------~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
+....+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+++|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 6666788999999954 3455667777655 46899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhHHHHHhhccccCCCccEEEEEec
Q 008345 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (569)
Q Consensus 331 Dip~v~~VI~~d~p~-s~~~~~qrvGR~gR~g~~G~~i~~v~ 371 (569)
|+|++++||+++.|. ....+.||+||+||.|..|.|++++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 46778899999999999999999995
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-42 Score=382.74 Aligned_cols=319 Identities=19% Similarity=0.233 Sum_probs=243.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 32 ~~~~~~l~~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
..+.+.+...+|. ||++|.++++.|+.+ .+.+++|+||||||++|++|++..+.. |.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 3445566788995 999999999999876 258999999999999999999987653 6789999999999
Q ss_pred HHHHHHHHHHhcccCCCeEEEEEcCCCHHHH---HHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 106 a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~---~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|.|+++.++++....++++..++|+.+.... +..+. +.++|+||||+.+.+ .+.+.+++++|+||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 9999999999888889999999999886653 33333 468999999998752 4568899999999999953
Q ss_pred CCChHHHHHHHHHhcC--CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~--~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
. .+...+....+ ..+++++||||+.+....+.. ..+.....++........+...+ +.... ...++..+
T Consensus 371 ~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~--~~~~~-~~~~~~~i 441 (630)
T TIGR00643 371 V----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVL--IKHDE-KDIVYEFI 441 (630)
T ss_pred H----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEE--eCcch-HHHHHHHH
Confidence 2 12222333332 268899999998654333322 22221111111111111222222 22222 25566667
Q ss_pred HHhcCCCCcEEEEEcCh--------hhHHHHHHHHHH--CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 008345 260 REHISSDQQTLIFVSTK--------HHVEFLNVLFRE--EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~--------~~~~~l~~~L~~--~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arG 329 (569)
.+.+..+.+++|||++. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 66666788999999876 445666777765 36789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC-ChhHHHHHhhccccCCCccEEEEEec
Q 008345 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (569)
Q Consensus 330 lDip~v~~VI~~d~p~-s~~~~~qrvGR~gR~g~~G~~i~~v~ 371 (569)
+|+|++++||+++.|. ....|.||+||+||.|+.|.|++++.
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999986 56778899999999999999999983
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=2e-42 Score=400.79 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=228.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|+ .|||+|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .|.+++||+|||+|+.|+++.++.++...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 488 6999999999999999999999999999996 56666555543 37889999999999999999999999988
Q ss_pred CCeEEEEEcCCCH-----HHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-----------C
Q 008345 121 DLRISLLVGGDSM-----ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~-----~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-----------~ 183 (569)
++.+..++|+.+. ..+...+. .+++|+|+||++|.+++.. ++..+++++|+||||++++ +
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 8988888877642 23333444 4699999999999998863 6667799999999999986 7
Q ss_pred ChH-HHHHHHHHhcCC------------------------CCcEEEEEecCChH-HHHHHHhcCCCCeeeeeccccccCC
Q 008345 184 GFA-EQLHKILGQLSE------------------------NRQTLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISP 237 (569)
Q Consensus 184 ~f~-~~l~~i~~~~~~------------------------~~q~ll~SAT~~~~-~~~~~~~~l~~~~~i~~~~~~~~~~ 237 (569)
||. +++..++..++. .+|+++||||+++. +.. ..+.++..+.+........
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccC
Confidence 885 677777777664 68999999999864 332 1223333344444444456
Q ss_pred CceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhh---HHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc
Q 008345 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (569)
Q Consensus 238 ~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~---~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~ 314 (569)
++.+.|+.+. ++...|..++... +.++||||+|+.. ++.++..|...|+.+..+||+| ...+++|++
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 6777777655 5666777777644 4689999999877 9999999999999999999999 223599999
Q ss_pred CCceEEEE----eccccccCCCCC-CCEEEEcCCCC
Q 008345 315 RKTMFLIV----TDVAARGIDIPL-LDNVINWDFPP 345 (569)
Q Consensus 315 g~~~ILV~----Tdv~arGlDip~-v~~VI~~d~p~ 345 (569)
|+++|||| ||+++||||+|+ +++|||||.|.
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999 699999999999 89999999996
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-42 Score=388.76 Aligned_cols=333 Identities=19% Similarity=0.297 Sum_probs=255.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
.|++|+|++.+++.+...||. |+|+|.++++.+.+|++++++||||||||+++.+++++.+.. +.+++|++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~r 75 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLR 75 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechH
Confidence 588999999999999999998 999999999999999999999999999999999999988754 45799999999
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC
Q 008345 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 104 eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~ 183 (569)
+||.|+++.++++. ..++++...+|+...... ....++|+|+||+++..++... ...+.++++||+||+|.+.+.
T Consensus 76 aLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 76 SLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCC
Confidence 99999999888764 467888888887654332 2356899999999998887753 344789999999999999987
Q ss_pred ChHHHHHHHHHh---cCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEE-----Ecchhh-HHHH
Q 008345 184 GFAEQLHKILGQ---LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TLRQEE-KHAA 254 (569)
Q Consensus 184 ~f~~~l~~i~~~---~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~-k~~~ 254 (569)
++...+..++.. ++...|++++|||+++. .+++.. +..+. +... .. +..+..... .+.... ....
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~~~--~r-~vpl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IKSN--FR-PVPLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cCCC--CC-CCCeEEEEEecCeeeeccccccccc
Confidence 776666666543 45678999999999763 444442 22221 1111 00 011111111 011111 1112
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC-------------------------CCceeecCCCCHHHHHHHH
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-------------------------LEPSVCYGDMDQDARKIHV 309 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~-------------------------~~~~~i~g~l~~~~R~~~l 309 (569)
+..++.+....++++||||+|+..++.++..|.... ..+.++||+|++++|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445555555668899999999999999988886431 2367899999999999999
Q ss_pred HHHhcCCceEEEEeccccccCCCCCCCEEEEcCC---------CCChhHHHHHhhccccCCC--ccEEEEEecccc
Q 008345 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSED 374 (569)
Q Consensus 310 ~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~---------p~s~~~~~qrvGR~gR~g~--~G~~i~~v~~~e 374 (569)
+.|++|.++|||||+++++|+|+|+..+|| .|. |.++.+|.||+||+||.|. .|.+++++...+
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999999999999999865444 443 4578899999999999985 477888876543
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.8e-41 Score=372.52 Aligned_cols=312 Identities=16% Similarity=0.159 Sum_probs=238.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKTAA---------FLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a---------~lip~l~~l~~~~-~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
-.+|.++++.+++|+|+++.|+||||||++ |++|.+..+..-. ...+.+++|++||||||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999997 5555555543211 223568999999999999999887764
Q ss_pred ccc---CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHH
Q 008345 117 GRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (569)
Q Consensus 117 ~~~---~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~ 193 (569)
..+ .+..+...+||... .+........+|+|+|++. ....++++++|||||||++..++ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 433 56788899999873 2222233467999999762 12357889999999999998776 4455555
Q ss_pred HhcC-CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch---------hhHHHHHHHHHHHhc
Q 008345 194 GQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EEKHAALLYMIREHI 263 (569)
Q Consensus 194 ~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---------~~k~~~L~~ll~~~~ 263 (569)
...+ ..+|+++||||+|..+..+ ..++.+|..+.+.. .....+.+.|..... ......+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 5543 3469999999999888777 56788888887753 223445555543221 111222334443322
Q ss_pred -CCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHH-hcCCceEEEEeccccccCCCCCCCEEE
Q 008345 264 -SSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRF-RARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 264 -~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F-~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
..++++|||++++..++.+.+.|... ++.+..+||+|++. ++.+++| ++|+.+||||||+|+||||||++++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23568999999999999999999887 68999999999985 4566777 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhHHHHHhhccccCCCccEEEEEeccccH
Q 008345 340 NWD---FPP---------KPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (569)
Q Consensus 340 ~~d---~p~---------s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~ 375 (569)
++| .|. |...|+||+||+||. ++|.|+.|+++++.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999 554 778999999999999 78999999998864
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-40 Score=387.29 Aligned_cols=323 Identities=22% Similarity=0.294 Sum_probs=234.4
Q ss_pred EEcCCCchHHHHHHHHHHHHhhhcC--------CCCCeEEEEEcCcHHHHHHHHHHHHH----h-------c-ccCCCeE
Q 008345 65 AMARTGSGKTAAFLVPMLQRLNQHV--------PQGGVRALILSPTRDLALQTLKFTKE----L-------G-RYTDLRI 124 (569)
Q Consensus 65 ~~a~TGSGKT~a~lip~l~~l~~~~--------~~~g~~~Lil~PtreLa~Q~~~~~~~----~-------~-~~~~l~~ 124 (569)
++||||||||++|.+|++.++.... ...+.++|||+|+++|+.|+.+.++. + + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999999999999987542 12467899999999999999987764 2 1 1357899
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC----hHHHHHHHHHhcCCCC
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG----FAEQLHKILGQLSENR 200 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~----f~~~l~~i~~~~~~~~ 200 (569)
...+|+.+..++...+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+.. +...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999999888777788999999999999988765323458999999999999999753 3445566666667789
Q ss_pred cEEEEEecCChHHHHHHHhcCC-CCeeeeeccccccCCCceEEEEEcchhh--------------------HHHHHHHHH
Q 008345 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEE--------------------KHAALLYMI 259 (569)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------------k~~~L~~ll 259 (569)
|+|++|||+++. .++++.... ++..+. .........+... +.+.... ....+...+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVV-NPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEE-CCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 555543322 344332 2222222222221 1111100 001111122
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCC---------------------------------CCceeecCCCCHHHHH
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------LEPSVCYGDMDQDARK 306 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~---------------------------------~~~~~i~g~l~~~~R~ 306 (569)
...+..+.++||||||+..|+.++..|++.. ..+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2223356899999999999999998887531 1146789999999999
Q ss_pred HHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHH----HH
Q 008345 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD----LH 382 (569)
Q Consensus 307 ~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~----l~ 382 (569)
.+++.|++|++++||||+.+++|||++.+++||||+.|.+...|+||+||+||. ..|.+..++.+.+...+.+ ++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 2333333344433332222 45
Q ss_pred HHhCCCccC
Q 008345 383 LFLSKPIRA 391 (569)
Q Consensus 383 ~~l~~~~~~ 391 (569)
.++...+..
T Consensus 397 ~~l~g~iE~ 405 (1490)
T PRK09751 397 CMFAGRLEN 405 (1490)
T ss_pred HHhcCCCCc
Confidence 566554443
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.4e-40 Score=356.98 Aligned_cols=320 Identities=22% Similarity=0.214 Sum_probs=253.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |||+|..++|.++.|+ |+.+.||+|||++|.+|++.... .|++++|++||++||.|.++++..+.++.
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 4766 9999999999999999 99999999999999999997754 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCC------------------------CCCCCeeEEEEe
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED------------------------MSLKSVEYVVFD 175 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~------------------------~~l~~l~~iViD 175 (569)
|+++++++||.+.. ......++||+|||.+.| +|+|..+-. .-...+.+.|+|
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997644 334456899999999988 666654211 113457899999
Q ss_pred CCCccC----------------C--CChHHHHHHHHHhcCC---------------------------------------
Q 008345 176 EADCLF----------------G--MGFAEQLHKILGQLSE--------------------------------------- 198 (569)
Q Consensus 176 Eah~l~----------------~--~~f~~~l~~i~~~~~~--------------------------------------- 198 (569)
|+|.++ . ..+......+...+..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999765 0 0111111111111100
Q ss_pred ----------------------------------------C--------------------------------------C
Q 008345 199 ----------------------------------------N--------------------------------------R 200 (569)
Q Consensus 199 ----------------------------------------~--------------------------------------~ 200 (569)
+ .
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 0
Q ss_pred cEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHH
Q 008345 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVE 280 (569)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~ 280 (569)
.+.+||||.+....++...+..++..+..... ........++.+...+|...|...+......+.++||||+|+..++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 36789999998888888888777655543332 2222334456677888999999999876556788999999999999
Q ss_pred HHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHH
Q 008345 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVH 352 (569)
Q Consensus 281 ~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip---~v~-----~VI~~d~p~s~~~~~q 352 (569)
.++..|...|+++..+||+++ +|+..+..|..+...|+||||+++||+||+ ++. +||+|++|.+.+.|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 999999999999999999855 555555666666678999999999999999 565 9999999999999999
Q ss_pred HhhccccCCCccEEEEEecccc
Q 008345 353 RVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 353 rvGR~gR~g~~G~~i~~v~~~e 374 (569)
|+|||||+|.+|.+++|++.+|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999865
No 55
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.3e-40 Score=381.18 Aligned_cols=289 Identities=20% Similarity=0.288 Sum_probs=224.9
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 008345 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 34 ~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
+.+.+.+ .|+ .|||+|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .|.++|||+|||+||.|+++.
T Consensus 67 f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 67 FEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHH
Confidence 3444444 455 6999999999999999999999999999997 77777766543 367899999999999999999
Q ss_pred HHHhcccCCCeEE---EEEcCCCHHHHHH---HHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC---
Q 008345 113 TKELGRYTDLRIS---LLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (569)
Q Consensus 113 ~~~~~~~~~l~~~---~~~gg~~~~~~~~---~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~--- 182 (569)
++.++...++.+. .++||.+..++.. .+. ++++|+|+||++|.+++... .. +++++|+||||++++
T Consensus 141 l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l---~~-~~~~iVvDEaD~~L~~~k 216 (1171)
T TIGR01054 141 ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL---GP-KFDFIFVDDVDALLKASK 216 (1171)
T ss_pred HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh---cC-CCCEEEEeChHhhhhccc
Confidence 9999887776544 4678887765432 333 46999999999999888752 22 899999999999998
Q ss_pred --------CChHHH-HHHH----------------------HHhcCCCCc--EEEEEec-CChHHHHHHHhcCCCCeeee
Q 008345 183 --------MGFAEQ-LHKI----------------------LGQLSENRQ--TLLFSAT-LPSALAEFAKAGLRDPHLVR 228 (569)
Q Consensus 183 --------~~f~~~-l~~i----------------------~~~~~~~~q--~ll~SAT-~~~~~~~~~~~~l~~~~~i~ 228 (569)
+||..+ +..+ +..++..+| +++|||| +|..+.. ..+.++..+.
T Consensus 217 ~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~ 293 (1171)
T TIGR01054 217 NVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFE 293 (1171)
T ss_pred cHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceE
Confidence 788764 3443 334556666 5679999 5655432 2334444455
Q ss_pred eccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcCh---hhHHHHHHHHHHCCCCceeecCCCCHHHH
Q 008345 229 LDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDAR 305 (569)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~---~~~~~l~~~L~~~~~~~~~i~g~l~~~~R 305 (569)
+........++.+.+..+.. +...|..+++.. +.++||||+|+ +.++.++..|...|+.+..+||++++
T Consensus 294 v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 294 VGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK--- 365 (1171)
T ss_pred ecCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH---
Confidence 55554455667777665443 244566776553 46899999999 99999999999999999999999974
Q ss_pred HHHHHHHhcCCceEEEE----eccccccCCCCC-CCEEEEcCCC
Q 008345 306 KIHVSRFRARKTMFLIV----TDVAARGIDIPL-LDNVINWDFP 344 (569)
Q Consensus 306 ~~~l~~F~~g~~~ILV~----Tdv~arGlDip~-v~~VI~~d~p 344 (569)
..++.|++|+++|||| ||+++||||+|+ +++|||||+|
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 5789999999999999 599999999999 8999999987
No 56
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-39 Score=366.01 Aligned_cols=308 Identities=19% Similarity=0.280 Sum_probs=242.1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhcccCCCeEEEE
Q 008345 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLL 127 (569)
Q Consensus 49 iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~l~~~~~ 127 (569)
+-.+.+..+..++++++.|+||||||++|.+|+++... .+.+++|+.|||++|.|+++.+ +.++...+..++..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 34456667777899999999999999999999998752 2457999999999999999876 45666677777777
Q ss_pred EcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC-ccCCCChHHH-HHHHHHhcCCCCcEEEE
Q 008345 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSENRQTLLF 205 (569)
Q Consensus 128 ~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah-~l~~~~f~~~-l~~i~~~~~~~~q~ll~ 205 (569)
+++.+ ....+.+|+|+|||+|++++.. ...++++++|||||+| ++++.++... +..+...+++..|+++|
T Consensus 81 vr~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Ecccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 77654 2345689999999999999875 4679999999999999 5787776543 34566667889999999
Q ss_pred EecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHH-HHHHHHHHhc-CCCCcEEEEEcChhhHHHHH
Q 008345 206 SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI-SSDQQTLIFVSTKHHVEFLN 283 (569)
Q Consensus 206 SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~ 283 (569)
|||++... ...++.++..+...... ..+.+.|..+...++.. .+...+...+ ...+++|||++++.+++.+.
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 99998753 34566666565544322 23556665554444332 1112222221 13578999999999999999
Q ss_pred HHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCC--------------
Q 008345 284 VLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK-------------- 346 (569)
Q Consensus 284 ~~L~~---~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s-------------- 346 (569)
..|.+ .++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++|||+++|..
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 4788999999999999999999999999999999999999999999999999998852
Q ss_pred ----hhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 347 ----PKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 347 ----~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
...|.||+||+||. ++|.||.++++.+..
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 23489999999999 799999999987654
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.8e-40 Score=360.41 Aligned_cols=336 Identities=28% Similarity=0.359 Sum_probs=269.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC---CCCCeEEEEEcCcHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALILSPTRDLA 106 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~---~~~g~~~Lil~PtreLa 106 (569)
|++.+.+.+.++ |..|||.|.++||.|.+|+++++.||||||||+|+++|++..+.... ...|..+|||+|-|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 689999999998 99999999999999999999999999999999999999999998762 34578999999999999
Q ss_pred HHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC-CCCCCCeeEEEEeCCCccCCCCh
Q 008345 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADCLFGMGF 185 (569)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~-~~~l~~l~~iViDEah~l~~~~f 185 (569)
..+...++..+..+|+.+...+|.++..+......+.|||+|+||+.|.-++...+ .-.+.++.++|+||.|.+.+..-
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999999999988877777778899999999999987765421 12488999999999999886543
Q ss_pred HHHHH----HHHHhcCCCCcEEEEEecCChHHHHHHHhcCCC--C-eeeeeccccccCCCceEEEEEcch-----hhHHH
Q 008345 186 AEQLH----KILGQLSENRQTLLFSATLPSALAEFAKAGLRD--P-HLVRLDVDTKISPDLKLAFFTLRQ-----EEKHA 253 (569)
Q Consensus 186 ~~~l~----~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~--~-~~i~~~~~~~~~~~~~~~~~~~~~-----~~k~~ 253 (569)
..++. .+....+ ..|.+++|||..+. .+.++...+. + .++.+.... .+++....... +.-..
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k----~~~i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK----KLEIKVISPVEDLIYDEELWA 240 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCC----cceEEEEecCCccccccchhH
Confidence 33333 3333334 78999999998643 3344333332 2 333332221 22222222211 12234
Q ss_pred HHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC-CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCC
Q 008345 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332 (569)
Q Consensus 254 ~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~-~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDi 332 (569)
.++..+.+..+....+|||+||+..+|.+...|...+ ..+..+||+++.+.|..+.++|++|+.+++|||+.++-|||+
T Consensus 241 ~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 241 ALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 4555555555556799999999999999999999887 788999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHHhhccccC-CCccEEEEEecc
Q 008345 333 PLLDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVTS 372 (569)
Q Consensus 333 p~v~~VI~~d~p~s~~~~~qrvGR~gR~-g~~G~~i~~v~~ 372 (569)
-.++.||+|..|.+...++||+||+|+. |....++.+...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999974 555666666665
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=6.7e-40 Score=386.99 Aligned_cols=327 Identities=18% Similarity=0.229 Sum_probs=255.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 008345 33 NVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (569)
Q Consensus 33 ~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~ 111 (569)
++.+.+++ .|| .|||+|+.++|.++.|+|+++.||||||||++++++.+.... .|.++|||+||++|+.|+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----KGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----cCCeEEEEECHHHHHHHHHH
Confidence 44555555 799 599999999999999999999999999999966655553321 36789999999999999999
Q ss_pred HHHHhcccC--CCeEEEEEcCCCHHHHHH---HHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC---
Q 008345 112 FTKELGRYT--DLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (569)
Q Consensus 112 ~~~~~~~~~--~l~~~~~~gg~~~~~~~~---~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~--- 182 (569)
.++.++... ++.+..++||.+..++.. .+. +.++|+|+||++|.+++... . ..++++||+||||++++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceecccccc
Confidence 999988765 467788899988776543 333 35999999999999877642 2 26799999999999986
Q ss_pred --------CChHHHHHH----HHH----------------------hcCCCCc-EEEEEecCChHHHHHHHhcCCCCeee
Q 008345 183 --------MGFAEQLHK----ILG----------------------QLSENRQ-TLLFSATLPSALAEFAKAGLRDPHLV 227 (569)
Q Consensus 183 --------~~f~~~l~~----i~~----------------------~~~~~~q-~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (569)
+||..++.. ++. .+|..+| ++++|||+++. ......+.++..+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f 295 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGF 295 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEE
Confidence 588777764 332 2355566 57799999853 1111233566666
Q ss_pred eeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhh---HHHHHHHHHHCCCCceeecCCCCHHH
Q 008345 228 RLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDA 304 (569)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~---~~~l~~~L~~~~~~~~~i~g~l~~~~ 304 (569)
.+........++.+.|+.+....+ ..+..++... +.++||||+|++. ++.+++.|...|+.+..+||+
T Consensus 296 ~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~----- 366 (1638)
T PRK14701 296 EVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK----- 366 (1638)
T ss_pred EecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----
Confidence 666666666678888877665555 5677777654 4689999999876 489999999999999999995
Q ss_pred HHHHHHHHhcCCceEEEEe----ccccccCCCCC-CCEEEEcCCCC---ChhHHHHHh-------------hccccCCCc
Q 008345 305 RKIHVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFPP---KPKIFVHRV-------------GRAARAGRT 363 (569)
Q Consensus 305 R~~~l~~F~~g~~~ILV~T----dv~arGlDip~-v~~VI~~d~p~---s~~~~~qrv-------------GR~gR~g~~ 363 (569)
|...+++|++|+++||||| ++++||||+|+ +.+|||||+|. +.+.|.|.. ||+||.|..
T Consensus 367 R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 367 NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 8899999999999999999 59999999998 99999999998 777666654 999999988
Q ss_pred cEEEEEeccccHHHHH
Q 008345 364 GTAFSFVTSEDMAYLL 379 (569)
Q Consensus 364 G~~i~~v~~~e~~~~~ 379 (569)
+.++......++..+.
T Consensus 447 ~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 447 IEGVLDVFPEDVEFLR 462 (1638)
T ss_pred chhHHHhHHHHHHHHH
Confidence 7777555555544443
No 59
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.7e-39 Score=364.08 Aligned_cols=307 Identities=18% Similarity=0.248 Sum_probs=241.2
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhcccCCCeEEEE
Q 008345 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRISLL 127 (569)
Q Consensus 49 iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~~~~~~~l~~~~~ 127 (569)
+-.+.+..+.+++++++.|+||||||++|.+|+++.... +.+++|+.|||++|.|+++.+. .++...+..++..
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 334566677778999999999999999999999876322 2379999999999999998764 5677778888888
Q ss_pred EcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc-cCCCChH-HHHHHHHHhcCCCCcEEEE
Q 008345 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFA-EQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 128 ~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~-l~~~~f~-~~l~~i~~~~~~~~q~ll~ 205 (569)
+++.+.. .....|+|+|||+|++++.. ...++++++|||||+|+ .++.++. .-+..++..++++.|+++|
T Consensus 84 vr~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 84 MRAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred ecCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 8876532 34568999999999999875 46799999999999996 5555432 2345566778889999999
Q ss_pred EecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHH-HHHHHHHHhc-CCCCcEEEEEcChhhHHHHH
Q 008345 206 SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI-SSDQQTLIFVSTKHHVEFLN 283 (569)
Q Consensus 206 SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~ 283 (569)
|||++.. .+ ..++.++..+..... ...+.+.|..+...++.. .+...+...+ ...+.+|||+++..+++.++
T Consensus 156 SATl~~~--~l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 156 SATLDND--RL-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred ecCCCHH--HH-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHH
Confidence 9999865 23 455666655554332 123566666665554443 2222222222 23688999999999999999
Q ss_pred HHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCC--------------
Q 008345 284 VLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK-------------- 346 (569)
Q Consensus 284 ~~L~~---~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s-------------- 346 (569)
+.|.. .++.+..+||+|++.+|..++..|++|+.+||||||++++|||||+|++|||++++..
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99987 5788899999999999999999999999999999999999999999999999887743
Q ss_pred ----hhHHHHHhhccccCCCccEEEEEeccccH
Q 008345 347 ----PKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (569)
Q Consensus 347 ----~~~~~qrvGR~gR~g~~G~~i~~v~~~e~ 375 (569)
...|.||+||+||. .+|.||.++++.+.
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 34799999999998 68999999998764
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.6e-38 Score=354.35 Aligned_cols=397 Identities=19% Similarity=0.198 Sum_probs=286.5
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g---~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
.||++|.++++.+..+ +++++.|+||||||.+|+.++.+.+.. |.++|||+||++|+.|+.+.+++. .+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 4899999999999874 789999999999999999887766643 678999999999999999888764 35
Q ss_pred CeEEEEEcCCCHHHHHH----HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-----ChHHHHHHH
Q 008345 122 LRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----GFAEQLHKI 192 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~----~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-----~f~~~l~~i 192 (569)
..+..++|+.+..+... ...+.++|+||||++++ .+++++++||+||+|..... .|..+-..+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 78999999987655433 23457899999999875 56889999999999986532 233333345
Q ss_pred HHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh-------HHHHHHHHHHHhcCC
Q 008345 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-------KHAALLYMIREHISS 265 (569)
Q Consensus 193 ~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------k~~~L~~ll~~~~~~ 265 (569)
++....+.+++++|||++.+. +....-+....+.+..............+...... -...++..+++.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s--~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLES--LANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHH--HHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 555667899999999976544 44433344555555544322222333344432211 235677888888888
Q ss_pred CCcEEEEEcCh------------------------------------------------------------hhHHHHHHH
Q 008345 266 DQQTLIFVSTK------------------------------------------------------------HHVEFLNVL 285 (569)
Q Consensus 266 ~~~~IIF~~t~------------------------------------------------------------~~~~~l~~~ 285 (569)
++++|||+|++ ..++.+.+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 99999998742 134567777
Q ss_pred HHHC--CCCceeecCCCCH--HHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE--EcCCCCCh----------hH
Q 008345 286 FREE--GLEPSVCYGDMDQ--DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPPKP----------KI 349 (569)
Q Consensus 286 L~~~--~~~~~~i~g~l~~--~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI--~~d~p~s~----------~~ 349 (569)
|... +..+..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|.+.+. ..
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 7765 6788899999864 5788999999999999999999999999999999985 55555433 56
Q ss_pred HHHHhhccccCCCccEEEEEeccc-----------cHHHHHHHHHHhCCCccCCCChHH------------HHhhhhhHH
Q 008345 350 FVHRVGRAARAGRTGTAFSFVTSE-----------DMAYLLDLHLFLSKPIRAAPSEEE------------VLLDMDGVM 406 (569)
Q Consensus 350 ~~qrvGR~gR~g~~G~~i~~v~~~-----------e~~~~~~l~~~l~~~~~~~~~~~~------------~~~~~~~~~ 406 (569)
|+|++||+||.+..|.+++..... |...|..-|+..++.+.++|.... +...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 899999999999999998665432 344566667777777778774432 222233333
Q ss_pred HHHHHHh-hcCCccccCCchhhhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 008345 407 SKIDQAI-ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459 (569)
Q Consensus 407 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y 459 (569)
..+.... ..+..++||.|+++.+..+.+..+++.+......+++........+
T Consensus 606 ~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~~~~~~~~~l~~~~~~~ 659 (679)
T PRK05580 606 ALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSPSRADLQKLLRAWLALL 659 (679)
T ss_pred HHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3333322 2234689999999999988888888777655556666555554444
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8.8e-39 Score=352.90 Aligned_cols=321 Identities=20% Similarity=0.240 Sum_probs=246.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|..+.+.++.|+ ++.+.||+|||++|++|++.... .|.+++|++||++||.|.++++..+.++.
T Consensus 75 ~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4874 9999999999988886 99999999999999999985544 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcC-----CCCCCCeeEEEEeCCCccCC------------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFG------------ 182 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~-----~~~l~~l~~iViDEah~l~~------------ 182 (569)
|+++++++||.+...+... ..+++|++|||+++ ++++...- ...+..+.++|+||+|+++=
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 9999999999884333333 35699999999999 66665421 13467899999999998761
Q ss_pred ----CChHHHHHHHHHhcCCC--------C--------------------------------------------------
Q 008345 183 ----MGFAEQLHKILGQLSEN--------R-------------------------------------------------- 200 (569)
Q Consensus 183 ----~~f~~~l~~i~~~~~~~--------~-------------------------------------------------- 200 (569)
..+......+...+... .
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 01222222333222111 0
Q ss_pred -----------------------------------------------------------cEEEEEecCChHHHHHHHhcC
Q 008345 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (569)
Q Consensus 201 -----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l 221 (569)
.+.+||+|...+-.+|...+
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y- 384 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY- 384 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh-
Confidence 24455555543333443332
Q ss_pred CCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
+...+.++...+....-....+.+...+|..++...+......+.++||||+|+..++.++..|...|+++..+||.+.
T Consensus 385 -~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 385 -NMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred -CCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 2222333222111110011234456678999999999876667899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCC---CCCC-----EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDI---PLLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDi---p~v~-----~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
+.++..+...++.| .|+||||+++||+|| |.+. +||+|++|.+.+.|+||+|||||+|.+|.++.|++.+
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88888777777665 799999999999999 6998 9999999999999999999999999999999999986
Q ss_pred c
Q 008345 374 D 374 (569)
Q Consensus 374 e 374 (569)
|
T Consensus 542 D 542 (790)
T PRK09200 542 D 542 (790)
T ss_pred H
Confidence 5
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.1e-38 Score=346.36 Aligned_cols=304 Identities=16% Similarity=0.171 Sum_probs=225.8
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCC
Q 008345 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (569)
...|+|+|.++++.++.+++.++.+|||||||.++...+. .+... ...++|||+||++|+.|+.+.+++++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3479999999999999999999999999999997654322 22222 2337999999999999999999998765555
Q ss_pred eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcE
Q 008345 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ 202 (569)
.+..+.+|.... .+++|+|+||+++.+.... .++++++||+||||++... .+..++..+++.+++
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 666677765432 4579999999999765422 3678999999999998864 456677777778899
Q ss_pred EEEEecCChHHHHHH-HhcCCCCeeeeecccccc----CCCceEEEE-----------------------EcchhhHHHH
Q 008345 203 LLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKI----SPDLKLAFF-----------------------TLRQEEKHAA 254 (569)
Q Consensus 203 ll~SAT~~~~~~~~~-~~~l~~~~~i~~~~~~~~----~~~~~~~~~-----------------------~~~~~~k~~~ 254 (569)
++||||++....... ..++-.|....+...... ...+....+ .+....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999965322111 011111222222111000 000000000 1112233444
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-ccccccCCCC
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIP 333 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T-dv~arGlDip 333 (569)
+..++......+.+++|||.+.+|++.+++.|...+..+..+||++++.+|..+++.|++|+..||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 555555544567889999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhhccccCCCccE
Q 008345 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (569)
Q Consensus 334 ~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~ 365 (569)
++++||+++++.+...|+||+||++|.+..+.
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999999876543
No 63
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5.7e-40 Score=325.08 Aligned_cols=286 Identities=29% Similarity=0.454 Sum_probs=230.9
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhccc---CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCee
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~---~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~ 170 (569)
+.++|+-|+|||+.|+++.+++|-.. ..++..++.||...+.|...+..+.+|+|+||+|+.+.+.. +.+.+..+.
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 67899999999999999977776544 45677789999999999999999999999999999999986 567889999
Q ss_pred EEEEeCCCccCCCChHHHHHHHHHhcCC------CCcEEEEEecCCh-HHHHHHHhcCCCCeeeeeccccccCCCceEEE
Q 008345 171 YVVFDEADCLFGMGFAEQLHKILGQLSE------NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (569)
Q Consensus 171 ~iViDEah~l~~~~f~~~l~~i~~~~~~------~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 243 (569)
++|+||+|.++..++.+.+..+...+|. ..|.++.|||+.. ++.......+.-|..+.+..+...++.+.+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999999988888764 4689999999843 23345555566677777766655554443333
Q ss_pred EEcch--hhHHH-------------------------------------HHHHHHHHhcCCCCcEEEEEcChhhHHHHHH
Q 008345 244 FTLRQ--EEKHA-------------------------------------ALLYMIREHISSDQQTLIFVSTKHHVEFLNV 284 (569)
Q Consensus 244 ~~~~~--~~k~~-------------------------------------~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~ 284 (569)
..+.+ +.... .-+..++++ ...++||||.|+..|+.+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHH
Confidence 22211 00011 111222222 35689999999999999999
Q ss_pred HHHHCC---CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCC
Q 008345 285 LFREEG---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (569)
Q Consensus 285 ~L~~~~---~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g 361 (569)
++.+.| +.++++||+..+.+|+..++.|..+.++.|||||++|||+||.++.++||..+|.+...|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999864 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeccccHHHHHHHH
Q 008345 362 RTGTAFSFVTSEDMAYLLDLH 382 (569)
Q Consensus 362 ~~G~~i~~v~~~e~~~~~~l~ 382 (569)
+-|.+|+++........+...
T Consensus 604 rmglaislvat~~ekvwyh~c 624 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWC 624 (725)
T ss_pred hcceeEEEeeccchheeehhh
Confidence 999999999865444444433
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.9e-38 Score=330.64 Aligned_cols=300 Identities=22% Similarity=0.268 Sum_probs=212.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh-cccCCCeEEEEEcCCCH-------
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLRISLLVGGDSM------- 133 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~-~~~~~l~~~~~~gg~~~------- 133 (569)
|+++.||||||||++|++|++..+... .+.+++|++|+++|+.|+++.++.+ +. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccC
Confidence 689999999999999999999876542 3568999999999999999988885 43 33444443321
Q ss_pred -----HHHHHHHc------CCCCEEEECcHHHHHHHhhc-CC--CCCC--CeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 134 -----ESQFEELA------QNPDIIIATPGRLMHHLSEV-ED--MSLK--SVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 134 -----~~~~~~l~------~~~~IiV~Tp~rl~~~l~~~-~~--~~l~--~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
........ ...+|+|+||+++++.+... .. ..+. ..++|||||+|.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 11111111 23679999999998876541 11 1111 23789999999999865433 555555554
Q ss_pred -CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEc--chhhHHHHHHHHHHHhcCCCCcEEEEEc
Q 008345 198 -ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVS 274 (569)
Q Consensus 198 -~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~~L~~ll~~~~~~~~~~IIF~~ 274 (569)
.+.|+++||||+|+.+.+++......+.....+.... .....+.+..+ ....+...+..++.. ...+.++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEEC
Confidence 4789999999999888888776543322111111100 00011222111 122344445445433 345789999999
Q ss_pred ChhhHHHHHHHHHHCCC--CceeecCCCCHHHHHH----HHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChh
Q 008345 275 TKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKI----HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (569)
Q Consensus 275 t~~~~~~l~~~L~~~~~--~~~~i~g~l~~~~R~~----~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~ 348 (569)
|+++++.++..|.+.+. .+..+||++++.+|.. +++.|++|+..||||||++++|+|+| +++||+++.| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988766 4889999999999976 48899999999999999999999996 8899998776 68
Q ss_pred HHHHHhhccccCCCc----cEEEEEecccc
Q 008345 349 IFVHRVGRAARAGRT----GTAFSFVTSED 374 (569)
Q Consensus 349 ~~~qrvGR~gR~g~~----G~~i~~v~~~e 374 (569)
.|+||+||+||.|+. |.++++....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999999864 36777765543
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6e-38 Score=343.14 Aligned_cols=320 Identities=21% Similarity=0.216 Sum_probs=235.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (569)
++|+|.++++.+..++..++.++||+|||++|++|++..... |..++|++|+++||.|+.+++..+.++.|+++.
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 344454555444445557999999999999999998766543 557999999999999999999999999999999
Q ss_pred EEEcCCC---HHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccCCC-------------
Q 008345 126 LLVGGDS---MESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM------------- 183 (569)
Q Consensus 126 ~~~gg~~---~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~~~------------- 183 (569)
+++++.. ...+......+++|++|||++| ++++... ....+..+.++|+||||.++-.
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 8887632 2222333346899999999999 6666431 2345778999999999987511
Q ss_pred ---ChHHHHHHHHHhcCCC--------C----------------------------------------------------
Q 008345 184 ---GFAEQLHKILGQLSEN--------R---------------------------------------------------- 200 (569)
Q Consensus 184 ---~f~~~l~~i~~~~~~~--------~---------------------------------------------------- 200 (569)
.+......+...+.+. .
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 1222222333322211 0
Q ss_pred ---------------------------------------------------------cEEEEEecCChHHHHHHHhcCCC
Q 008345 201 ---------------------------------------------------------QTLLFSATLPSALAEFAKAGLRD 223 (569)
Q Consensus 201 ---------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l~~ 223 (569)
.+.+||+|...+-.+|...+ +
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY--~ 381 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY--S 381 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh--C
Confidence 23455555444444444332 2
Q ss_pred CeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHH
Q 008345 224 PHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303 (569)
Q Consensus 224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~ 303 (569)
...+.++...+....-....+++...+|..++...+.+....+.++||||+|+..++.++..|...|+++..+||++++.
T Consensus 382 l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~ 461 (762)
T TIGR03714 382 LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAK 461 (762)
T ss_pred CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHH
Confidence 22233322221111111123555677899999999988777889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCceEEEEeccccccCCCC---------CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIP---------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 304 ~R~~~l~~F~~g~~~ILV~Tdv~arGlDip---------~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
++..+...++.| .|+||||+|+||+||| ++.+|+++++|....+ +||+|||||+|.+|.++.|++.+|
T Consensus 462 E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 462 EAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred HHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 888877766666 7999999999999999 9999999999987666 999999999999999999999876
Q ss_pred H
Q 008345 375 M 375 (569)
Q Consensus 375 ~ 375 (569)
.
T Consensus 539 ~ 539 (762)
T TIGR03714 539 D 539 (762)
T ss_pred h
Confidence 3
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.6e-37 Score=310.48 Aligned_cols=330 Identities=24% Similarity=0.329 Sum_probs=249.5
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+.-+++.||.......+.+ +.++..|||-|||+.+++-+..+|... .| ++|+++||+.|+.|.+..+.++.....
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3447899999998887776 899999999999999998888887764 34 799999999999999999999877667
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCc
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q 201 (569)
-.++.++|..+.++....| ....|+|+||..+.+-+.. +.+++.++.++|||||||....--+-.+..-+.....++.
T Consensus 87 ~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 7888999998877665544 5688999999999877765 6799999999999999998765433344443444455778
Q ss_pred EEEEEecCChHHHHHHH---hcCCCCeeeeecccccc---CCCceEEEEEcchh--------------------------
Q 008345 202 TLLFSATLPSALAEFAK---AGLRDPHLVRLDVDTKI---SPDLKLAFFTLRQE-------------------------- 249 (569)
Q Consensus 202 ~ll~SAT~~~~~~~~~~---~~l~~~~~i~~~~~~~~---~~~~~~~~~~~~~~-------------------------- 249 (569)
++++||||..+.+.+.. ..--+-..++...+... .......++.+.-.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999665544333 22112222221111000 00111111111100
Q ss_pred --------------------------------------------------------------------------------
Q 008345 250 -------------------------------------------------------------------------------- 249 (569)
Q Consensus 250 -------------------------------------------------------------------------------- 249 (569)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence
Q ss_pred -----------------------hHHHHHHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHCCCCce-eec------
Q 008345 250 -----------------------EKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCY------ 297 (569)
Q Consensus 250 -----------------------~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~-~i~------ 297 (569)
.|...+..++++.+ ..+.++|||++.+..++.+..+|...+..+. .+.
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 02233334444433 3467899999999999999999999988774 332
Q ss_pred --CCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc--
Q 008345 298 --GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-- 373 (569)
Q Consensus 298 --g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-- 373 (569)
.+|+|.++.+++++|++|+++|||||+++.+|+|||.+|.||.|++.+|+..++||.|||||. +.|.++++++.+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 479999999999999999999999999999999999999999999999999999999999997 889999999987
Q ss_pred cHHHHH
Q 008345 374 DMAYLL 379 (569)
Q Consensus 374 e~~~~~ 379 (569)
|..|++
T Consensus 484 deayy~ 489 (542)
T COG1111 484 DEAYYY 489 (542)
T ss_pred HHHHHH
Confidence 444443
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.6e-37 Score=337.71 Aligned_cols=320 Identities=23% Similarity=0.286 Sum_probs=247.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|..+.+.++.|+ ++.++||+|||++|.+|++-.... |.+++|++||++||.|.++++..+.++.
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5776 9999999999888776 999999999999999999633332 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcC-----CCCCCCeeEEEEeCCCccCCC---------C-
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFGM---------G- 184 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~-----~~~l~~l~~iViDEah~l~~~---------~- 184 (569)
|+++++++||.+........ .++|++|||++| ++++...- .+.+..+.++|+||+|+++-. |
T Consensus 125 GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 99999999998876554443 589999999999 99887631 246788999999999987620 0
Q ss_pred ------hHHHHHHHHHhcCCC---------C-------------------------------------------------
Q 008345 185 ------FAEQLHKILGQLSEN---------R------------------------------------------------- 200 (569)
Q Consensus 185 ------f~~~l~~i~~~~~~~---------~------------------------------------------------- 200 (569)
.......+.+.+..+ +
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 111112222211100 0
Q ss_pred -----------------------------------------------------------cEEEEEecCChHHHHHHHhcC
Q 008345 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (569)
Q Consensus 201 -----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l 221 (569)
.+.+||+|...+..+|...+-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 234555555444444444332
Q ss_pred CCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
-+ .+.++...+....-....++....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|++
T Consensus 363 l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 363 LE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 22 22222211110000111233345678888988887777889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCC-------CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPL-------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~-------v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
+.+|+..+..|+.+...|+|||++|+||+||+. ..+||+++.|.+.+.|.||.||+||+|.+|.+..|++.+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999875
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.6e-37 Score=324.09 Aligned_cols=324 Identities=24% Similarity=0.368 Sum_probs=258.0
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 36 RAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 36 ~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
..|+. .||...+|-|.++|..+++|+|+++..|||+||+++|.+|.+-. .| -+|||+|-.+|-....+.++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G-~TLVVSPLiSLM~DQV~~l~ 78 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EG-LTLVVSPLISLMKDQVDQLE 78 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CC-CEEEECchHHHHHHHHHHHH
Confidence 33443 49999999999999999999999999999999999999998754 35 48999999999887777777
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC--hHH-
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAE- 187 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~--f~~- 187 (569)
.. |+.+..+.+..+.+++...+. ...++++-+|++|..--.. +.+.--.+.++||||||+++.|| |..
T Consensus 79 ~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 79 AA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred Hc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHh
Confidence 65 488888888877776654332 4589999999998532111 12334568899999999999998 544
Q ss_pred --HHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCC--CCeeeeeccccccCCCceEEEEEcc-hhhHHHHHHHHHHH-
Q 008345 188 --QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIRE- 261 (569)
Q Consensus 188 --~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~L~~ll~~- 261 (569)
++..+...+| +.+++.+|||-++.+..-+...+. .+..+....+ .+++........ ...+.. ++.+
T Consensus 154 Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~~~~~q~~----fi~~~ 225 (590)
T COG0514 154 YRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKGEPSDQLA----FLATV 225 (590)
T ss_pred HHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---CchhhhhhhhcccHHHHHH----HHHhh
Confidence 4555566676 788999999999988877666553 4444433322 233332222221 122222 3332
Q ss_pred hcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEc
Q 008345 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (569)
Q Consensus 262 ~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~ 341 (569)
.....+..||||.|++.++.+++.|...|+.+...|++|+.++|..+.++|.+++++|+|||.+...|||-|++.+||+|
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEe
Confidence 22345678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHH
Q 008345 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (569)
Q Consensus 342 d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~ 380 (569)
|+|.+.+.|.|-+||+||.|.+..|++|+++.|......
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~ 344 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRY 344 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHH
Confidence 999999999999999999999999999999998764443
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-36 Score=326.14 Aligned_cols=374 Identities=18% Similarity=0.212 Sum_probs=261.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH----H
Q 008345 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----E 139 (569)
Q Consensus 64 l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~ 139 (569)
++.|+||||||.+|+..+...+. .|.++||++|+++|+.|+++.+++. .+..+..++++.+..+... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHH
Confidence 47899999999999766544432 3678999999999999999888764 2467888898877654322 3
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-----ChHHHHHHHHHhcCCCCcEEEEEecCChHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----GFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-----~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (569)
..+..+|||||++.++ .++.++++|||||+|..... .|..+-..++.....+.+++++|||++.+
T Consensus 73 ~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle-- 142 (505)
T TIGR00595 73 KNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE-- 142 (505)
T ss_pred HcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH--
Confidence 3356899999999875 46889999999999987632 24444344555555688999999996644
Q ss_pred HHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh----HHHHHHHHHHHhcCCCCcEEEEEcChhh------------
Q 008345 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE----KHAALLYMIREHISSDQQTLIFVSTKHH------------ 278 (569)
Q Consensus 215 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----k~~~L~~ll~~~~~~~~~~IIF~~t~~~------------ 278 (569)
.+.+..-+....+.+.............++...... -...++..+.+.+..++++|||+|++..
T Consensus 143 s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 143 SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 444443344444444433222222333444433322 2356788888888889999999875432
Q ss_pred ------------------------------------------------HHHHHHHHHHC--CCCceeecCCCCHHHH--H
Q 008345 279 ------------------------------------------------VEFLNVLFREE--GLEPSVCYGDMDQDAR--K 306 (569)
Q Consensus 279 ------------------------------------------------~~~l~~~L~~~--~~~~~~i~g~l~~~~R--~ 306 (569)
++.+.+.|.+. +..+..+|+++.+..+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777777765 6788899999887655 8
Q ss_pred HHHHHHhcCCceEEEEeccccccCCCCCCCEEE--EcCCCCC----------hhHHHHHhhccccCCCccEEEEEe-ccc
Q 008345 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPPK----------PKIFVHRVGRAARAGRTGTAFSFV-TSE 373 (569)
Q Consensus 307 ~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI--~~d~p~s----------~~~~~qrvGR~gR~g~~G~~i~~v-~~~ 373 (569)
.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|.... ...|+|++||+||.++.|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999875 6664322 356899999999999999998544 333
Q ss_pred c----------HHHHHHHHHHhCCCccCCCCh------------HHHHhhhhhHHHHHHHHhhcCCccccCCchhhhHHH
Q 008345 374 D----------MAYLLDLHLFLSKPIRAAPSE------------EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (569)
Q Consensus 374 e----------~~~~~~l~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (569)
+ +..|..-++..++.+.++|.. +.+...+......+.+....+..++||.|+++....
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lgP~~~~~~k~~ 462 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIA 462 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEEeCCccccchhhc
Confidence 2 333455555555666666622 223333333344444433334568999999999988
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHH
Q 008345 432 SDRVREIIDSSADLNSLQRTCTNA 455 (569)
Q Consensus 432 ~~~~~~l~~~~~~l~~l~~~~~~~ 455 (569)
..+..+++.++.+...+++.....
T Consensus 463 ~~~r~~~l~k~~~~~~~~~~l~~~ 486 (505)
T TIGR00595 463 GRYRYQILLKSKSFLVLQKLVNKT 486 (505)
T ss_pred CeeEEEEEEEcCCHHHHHHHHHHH
Confidence 888888777766655666655544
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-34 Score=332.46 Aligned_cols=325 Identities=24% Similarity=0.327 Sum_probs=242.5
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+.-+|+++|..++..++.+ ++++++|||+|||.++++++...+.. .+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3346999999999888877 89999999999999999999887732 456899999999999999999998765445
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCc
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q 201 (569)
.++..++|+.+.... ..+..+++|+|+||+.+...+.. +.+++.++++|||||||++........+...+.......+
T Consensus 87 ~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 678888888776543 34456789999999999776654 4577889999999999998765433444444444445677
Q ss_pred EEEEEecCChH---HHHHHHhcCCC------------------Cee--eeeccc------------------------cc
Q 008345 202 TLLFSATLPSA---LAEFAKAGLRD------------------PHL--VRLDVD------------------------TK 234 (569)
Q Consensus 202 ~ll~SAT~~~~---~~~~~~~~l~~------------------~~~--i~~~~~------------------------~~ 234 (569)
+++||||+... +.......... +.. +.+... ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999997322 22222211100 000 000000 00
Q ss_pred cC-CC--c------------eEEE--------------------------------------------------------
Q 008345 235 IS-PD--L------------KLAF-------------------------------------------------------- 243 (569)
Q Consensus 235 ~~-~~--~------------~~~~-------------------------------------------------------- 243 (569)
.. .. + ....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00 00 0 0000
Q ss_pred ----------------EEcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCC------
Q 008345 244 ----------------FTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD------ 299 (569)
Q Consensus 244 ----------------~~~~~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~------ 299 (569)
.......|...|..+|.+.. ..+.++||||++++.++.+.+.|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 00001224555566665543 467899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 300 --MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 300 --l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
|++.+|..++++|++|+.+|||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.|. |.++.++..+.
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999865 88999888643
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=7.1e-35 Score=303.20 Aligned_cols=291 Identities=19% Similarity=0.209 Sum_probs=205.2
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc----CCC
Q 008345 49 IQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY----TDL 122 (569)
Q Consensus 49 iQ~~~i~~il~g~d--vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~----~~l 122 (569)
+|.++++.+..+.+ +++.||||||||.+|++|++.. +.++++++|+++|+.|+++.++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999874 7889999999999999998842 235899999999999999888876532 245
Q ss_pred eEEEEEcCCCHH--HHH------------------HHHcCCCCEEEECcHHHHHHHhhcC---C-C---CCCCeeEEEEe
Q 008345 123 RISLLVGGDSME--SQF------------------EELAQNPDIIIATPGRLMHHLSEVE---D-M---SLKSVEYVVFD 175 (569)
Q Consensus 123 ~~~~~~gg~~~~--~~~------------------~~l~~~~~IiV~Tp~rl~~~l~~~~---~-~---~l~~l~~iViD 175 (569)
.+..+.|....+ ... ......+.|+++||+.|..++.... . . .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 565565542211 000 1112468889999998876554310 0 1 15789999999
Q ss_pred CCCccCCCC-----hHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhc--CCCCeeeeeccc------------c---
Q 008345 176 EADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVD------------T--- 233 (569)
Q Consensus 176 Eah~l~~~~-----f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~--l~~~~~i~~~~~------------~--- 233 (569)
|+|.+...+ +......+++......+++++|||+|+.+....... ++.+... +... .
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccc
Confidence 999987433 223445555555556799999999999888777654 4444222 1111 0
Q ss_pred ----ccCCCceEEEEEcchhhHHHHH---HHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHCC--CCceeecCCCCH
Q 008345 234 ----KISPDLKLAFFTLRQEEKHAAL---LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMDQ 302 (569)
Q Consensus 234 ----~~~~~~~~~~~~~~~~~k~~~L---~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~~--~~~~~i~g~l~~ 302 (569)
...+.+.+.+.. ....+...+ ...+.+.+ ..+.++||||+|+.+++.++..|.+.+ +.+..+||.+++
T Consensus 232 ~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 232 QSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred cccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 011244454444 333333333 33333322 246799999999999999999999864 567889999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccc
Q 008345 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~g 358 (569)
..|... ++.+||||||+++||+|+|.+ +|| ++ |.+...|+||+||+|
T Consensus 311 ~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 988654 478999999999999999986 666 45 889999999999997
No 72
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=322.71 Aligned_cols=343 Identities=23% Similarity=0.275 Sum_probs=258.2
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 28 l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il-~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+.+.+.+..-++..|+..+.|-|+.++...+ +++|+++++|||||||+.+++.++..+.+. +.++++++|+++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa 89 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALA 89 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 3478888888899999888888888886654 469999999999999999999999998874 56799999999999
Q ss_pred HHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChH
Q 008345 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (569)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~ 186 (569)
.|+++.++++ ...|+++...+|+...... ...+++|+|+||+++...+.+... -+..+++||+||+|.+.+..-.
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccC
Confidence 9999988844 4568999999998875543 236799999999999988887443 5788999999999999987434
Q ss_pred HHHHHHHHhc---CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc-cCCCceEEEEEcchh------hHHHHHH
Q 008345 187 EQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQE------EKHAALL 256 (569)
Q Consensus 187 ~~l~~i~~~~---~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~------~k~~~L~ 256 (569)
..+..|+.++ ....|++.+|||+|+. .+++...-.++..-....... ........++..... .....++
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~ 243 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLAL 243 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHH
Confidence 4444444443 3447999999999875 334443322222111111111 111222333333221 2345666
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC-------------------------------------CCCceeecCC
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGD 299 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i~g~ 299 (569)
.++...+..++++||||+|+..+...+..|... ...+.++|.+
T Consensus 244 ~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 244 ELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAG 323 (766)
T ss_pred HHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccC
Confidence 777777888999999999999999888888730 0125689999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE----EcC-----CCCChhHHHHHhhccccCCCc--cEEEE
Q 008345 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWD-----FPPKPKIFVHRVGRAARAGRT--GTAFS 368 (569)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI----~~d-----~p~s~~~~~qrvGR~gR~g~~--G~~i~ 368 (569)
|+.+.|..+.+.|+.|.++||+||+.+|+|+|+|.-.+|| -|+ .+.+.-++.|+.||+||.|-. |.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999877776 566 456788899999999998865 77777
Q ss_pred Eecc-ccHHHHHH
Q 008345 369 FVTS-EDMAYLLD 380 (569)
Q Consensus 369 ~v~~-~e~~~~~~ 380 (569)
+.+. ++..++.+
T Consensus 404 ~~~~~~~~~~~~~ 416 (766)
T COG1204 404 LATSHDELEYLAE 416 (766)
T ss_pred EecCccchhHHHH
Confidence 7743 44444433
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=296.81 Aligned_cols=339 Identities=23% Similarity=0.294 Sum_probs=270.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
-+.++|.+++.+.+-|+..|++.+.|+|.-++.. +++|.|.++.++|+||||++.-++-+.++.. .|.+.|+|+|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvP 269 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVP 269 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEeh
Confidence 4678999999999999999999999999999976 6789999999999999999988888877776 3778999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH----HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
..+||.|-+..+++--...++++..-+|-........ .-..++||||||++-+-+++.. + -.+.+++.|||||+
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt-g-~~lgdiGtVVIDEi 347 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT-G-KDLGDIGTVVIDEI 347 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc-C-CcccccceEEeeee
Confidence 9999999998776633577899988888765443321 1123689999999999888775 3 67899999999999
Q ss_pred CccCCCChHHHHHHH---HHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc-hhhHHH
Q 008345 178 DCLFGMGFAEQLHKI---LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHA 253 (569)
Q Consensus 178 h~l~~~~f~~~l~~i---~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~ 253 (569)
|.+-+..-..++.-+ ++.+-+..|.+.+|||..+. .++++..--+++.+ + .. +-.+..+.+.++ ..+|..
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y--~--~R-PVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLY--D--ER-PVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEee--c--CC-CCChhHeeeeecCchHHHH
Confidence 998875433444433 44555689999999999665 45666654444333 2 12 233555555555 677887
Q ss_pred HHHHHHHHhc------CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 254 ALLYMIREHI------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 254 ~L~~ll~~~~------~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
.+..+.+... .-.+|||||++|++.|++++..|...|+++...|++|+..+|+.+...|.++++.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 7777776533 2357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEE---EcCCC-CChhHHHHHhhccccCCC--ccEEEEEeccc
Q 008345 328 RGIDIPLLDNVI---NWDFP-PKPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (569)
Q Consensus 328 rGlDip~v~~VI---~~d~p-~s~~~~~qrvGR~gR~g~--~G~~i~~v~~~ 373 (569)
-|+|+|.-.++. -++.- -++..|.|+.||+||.+. .|.+|+++.|.
T Consensus 502 AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999754432 12222 278999999999999875 49999999875
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.3e-34 Score=326.26 Aligned_cols=304 Identities=18% Similarity=0.261 Sum_probs=217.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC----cHHHHHHHHHHHHH-hcccCC
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP----TRDLALQTLKFTKE-LGRYTD 121 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P----treLa~Q~~~~~~~-~~~~~~ 121 (569)
+.+..+.++.+..++.+++.|+||||||+ .+|.+...... .....+++.-| +++||.|+.+.+.. ++...|
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 34444566666677778899999999999 67854332211 11112333446 56888888887764 555555
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC-ccCCCChHHH-HHHHHHhcCCC
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSEN 199 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah-~l~~~~f~~~-l~~i~~~~~~~ 199 (569)
+.+ ..+.+ ...++.|+|+|||+|++.+.. ...++++++||||||| ++++++|... +..++.. .+.
T Consensus 152 Y~v-------rf~~~---~s~~t~I~v~TpG~LL~~l~~--d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 152 YKV-------RFNDQ---VSDNTMVKLMTDGILLAEIQQ--DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred eee-------cCccc---cCCCCCEEEEChHHHHHHHhc--CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 432 11111 245789999999999999875 3458999999999999 6889888754 3344333 246
Q ss_pred CcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch------hhHHHHHHHHHHHh-cCCCCcEEEE
Q 008345 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREH-ISSDQQTLIF 272 (569)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~L~~ll~~~-~~~~~~~IIF 272 (569)
.|+++||||++. ..+.+.+.+.| .+.+.... ..+.+.|..+.. .+....++..+... ....+.+|||
T Consensus 219 lKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 899999999975 36666655555 45554332 224555554432 12333444433322 2345789999
Q ss_pred EcChhhHHHHHHHHHHCCCC---ceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcC-------
Q 008345 273 VSTKHHVEFLNVLFREEGLE---PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD------- 342 (569)
Q Consensus 273 ~~t~~~~~~l~~~L~~~~~~---~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d------- 342 (569)
++++.+++.+++.|...++. +..+||+|++.+|..+++. .|..+|+|||+++++|||||++++||+++
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999987765 5689999999999998875 57889999999999999999999999986
Q ss_pred --------CC---CChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 343 --------FP---PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 343 --------~p---~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
+| .|...|.||+||+||. .+|.||.+++++++.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 33 3457899999999999 689999999987643
No 75
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3e-33 Score=315.61 Aligned_cols=352 Identities=27% Similarity=0.353 Sum_probs=274.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
....+..++.+.|...|+++|.+|+..+.+|+|+|+..+||||||++|++|+++.+.... ..++|+|.||++||...
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 344568888889999999999999999999999999999999999999999999998763 33799999999999999
Q ss_pred HHHHHHhcccCC--CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC---CCCCCeeEEEEeCCCccCCC-
Q 008345 110 LKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGM- 183 (569)
Q Consensus 110 ~~~~~~~~~~~~--l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~---~~l~~l~~iViDEah~l~~~- 183 (569)
.+.+.++....+ +.+..+.|.....+....+.+.|+|+++||..|..++..... +.++++++||+||+|-.-..
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999998877766 777777787776666677889999999999999875554322 34788999999999975432
Q ss_pred --C---hHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc---------hh
Q 008345 184 --G---FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------QE 249 (569)
Q Consensus 184 --~---f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~ 249 (569)
. ...++..+++..+.+.|+++.|||+.+. .+++..+.+......++.+..... ........+ ..
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~-~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRG-LRYFVRREPPIRELAESIRR 289 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCC-ceEEEEeCCcchhhhhhccc
Confidence 1 3455666666667789999999999665 556666666554443333332222 222222222 12
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHH----HHHHHCC----CCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 008345 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN----VLFREEG----LEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (569)
Q Consensus 250 ~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~----~~L~~~~----~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV 321 (569)
.....+-.++......+-++|+|+.++..++.+. ..+...+ ..+...++++...+|.++...|++|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 4445555566666667899999999999999886 3444444 5577888999999999999999999999999
Q ss_pred EeccccccCCCCCCCEEEEcCCCC-ChhHHHHHhhccccCCCccEEEEEeccccHH--HHHHHHHHhC
Q 008345 322 VTDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA--YLLDLHLFLS 386 (569)
Q Consensus 322 ~Tdv~arGlDip~v~~VI~~d~p~-s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~--~~~~l~~~l~ 386 (569)
+|.++.-|+||-.++.||.+.+|. +...|.||.||+||.++.+..+.++..+... |....+.++.
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 8999999999999999888777777755433 3333344444
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-33 Score=307.53 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=222.9
Q ss_pred CChHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 45 VPTPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~-g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
.|+|+|.+++..+.. | +..+++.|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 489999999998874 3 4689999999999998774443 32 24599999999999999999998865555
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh-------cCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~-------~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~ 194 (569)
..+..++|+.... .....+|+|+|+..+.....+ +..+.-..+++||+||||++... ....++.
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~ 397 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLT 397 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHH
Confidence 6666777654221 123478999999877532111 11233457899999999998643 3444555
Q ss_pred hcCCCCcEEEEEecCChHHHH--HHHhcCCCCeeeeecccccc----CCCceEEEEEc----------------------
Q 008345 195 QLSENRQTLLFSATLPSALAE--FAKAGLRDPHLVRLDVDTKI----SPDLKLAFFTL---------------------- 246 (569)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~----~~~~~~~~~~~---------------------- 246 (569)
.+. ....+++||||...-.. .... +-.|..+..+..... ...+...-+.|
T Consensus 398 ~l~-a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 398 IVQ-AHCKLGLTATLVREDDKITDLNF-LIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred hcC-cCcEEEEeecCcccCCchhhhhh-hcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 554 34579999998543111 1111 122444433221111 01111111111
Q ss_pred -chhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceEEEEec
Q 008345 247 -RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (569)
Q Consensus 247 -~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g-~~~ILV~Td 324 (569)
....|...+..++..+-..+.++||||.+..+++.++..|. +..+||++++.+|..+++.|++| .+++||+|+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 12335555555665543467899999999999998888772 46799999999999999999975 789999999
Q ss_pred cccccCCCCCCCEEEEcCCC-CChhHHHHHhhccccCCCccEE-------EEEecccc--HHHHHHHHHHh
Q 008345 325 VAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTA-------FSFVTSED--MAYLLDLHLFL 385 (569)
Q Consensus 325 v~arGlDip~v~~VI~~d~p-~s~~~~~qrvGR~gR~g~~G~~-------i~~v~~~e--~~~~~~l~~~l 385 (569)
++.+|+|+|.+++||+++.| .+...|+||+||++|.+..|.+ |+|++++. +.+-..-..|+
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999999988 4999999999999999877665 89999864 44444445555
No 77
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-33 Score=304.56 Aligned_cols=415 Identities=23% Similarity=0.272 Sum_probs=299.1
Q ss_pred CCCCCCHHHHHHHHHCCCC----------------------CChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHH
Q 008345 26 ESLNLSPNVFRAIKRKGYK----------------------VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLV 79 (569)
Q Consensus 26 ~~l~l~~~~~~~l~~~g~~----------------------~~t~iQ~~~i~~il~g----~dvl~~a~TGSGKT~a~li 79 (569)
..++.+..+++.+.++|+- .+++-|..++..+... ...++.|.||||||.+|+-
T Consensus 157 ~~~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~ 236 (730)
T COG1198 157 HAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE 236 (730)
T ss_pred hhcchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH
Confidence 3456777888888887763 4689999999998776 6699999999999999995
Q ss_pred HHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHH
Q 008345 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHL 158 (569)
Q Consensus 80 p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~-~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l 158 (569)
.+-+.|. .|+++|||+|.++|..|+.+.++. |+....+-++.+..+...+.|.....+...|||||...++
T Consensus 237 ~i~~~L~-----~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--- 308 (730)
T COG1198 237 AIAKVLA-----QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--- 308 (730)
T ss_pred HHHHHHH-----cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc---
Confidence 5555544 488999999999999998887765 5433333333334444455666666789999999999998
Q ss_pred hhcCCCCCCCeeEEEEeCCCccC-----CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccc
Q 008345 159 SEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233 (569)
Q Consensus 159 ~~~~~~~l~~l~~iViDEah~l~-----~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 233 (569)
.+++++++||+||.|.-. ...|+.+-..+++.-..+++++|.||| ++++.+.+..-+.+..+.+....
T Consensus 309 -----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 309 -----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred -----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCC--CCHHHHHhhhcCceEEEEccccc
Confidence 789999999999999765 345888888888888889999999999 55778888766666777776655
Q ss_pred ccCCCceEEEEEcchhh------HHHHHHHHHHHhcCCCCcEEEEEcChh------------------------------
Q 008345 234 KISPDLKLAFFTLRQEE------KHAALLYMIREHISSDQQTLIFVSTKH------------------------------ 277 (569)
Q Consensus 234 ~~~~~~~~~~~~~~~~~------k~~~L~~ll~~~~~~~~~~IIF~~t~~------------------------------ 277 (569)
.........++.++.+. -...|++.+++.+..++++|+|+|.+.
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~ 461 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG 461 (730)
T ss_pred cccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCC
Confidence 53334455555554422 236889999999999999999998211
Q ss_pred ------------------------------hHHHHHHHHHHC--CCCceeecCCCCHH--HHHHHHHHHhcCCceEEEEe
Q 008345 278 ------------------------------HVEFLNVLFREE--GLEPSVCYGDMDQD--ARKIHVSRFRARKTMFLIVT 323 (569)
Q Consensus 278 ------------------------------~~~~l~~~L~~~--~~~~~~i~g~l~~~--~R~~~l~~F~~g~~~ILV~T 323 (569)
-++.+.+.|... +..+..+.++.... .-+..+..|.+|+.+|||+|
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 123444444433 34566666665443 34677999999999999999
Q ss_pred ccccccCCCCCCCEEE--EcC-------CCCChhH---HHHHhhccccCCCccEEEEEeccc-----------cHHHHHH
Q 008345 324 DVAARGIDIPLLDNVI--NWD-------FPPKPKI---FVHRVGRAARAGRTGTAFSFVTSE-----------DMAYLLD 380 (569)
Q Consensus 324 dv~arGlDip~v~~VI--~~d-------~p~s~~~---~~qrvGR~gR~g~~G~~i~~v~~~-----------e~~~~~~ 380 (569)
++++.|.|+|++++|. +.| +..+.+. +.|..||+||++.+|.+++-.... |+..|..
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~ 621 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYE 621 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHH
Confidence 9999999999999975 333 3333333 599999999999999887655433 4555666
Q ss_pred HHHHhCCCccCCCChHH------------HHhhhhhHHHHHHHHhhcCCccccCCchhhhHHHHHHHHHHHHhchhhHHH
Q 008345 381 LHLFLSKPIRAAPSEEE------------VLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448 (569)
Q Consensus 381 l~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l 448 (569)
-|+..++.+.++|.... +...+......++.....+..++||.|+++......+..+++.++..-..|
T Consensus 622 ~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~~~L 701 (730)
T COG1198 622 QELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADL 701 (730)
T ss_pred HHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcHHHH
Confidence 67777777888874332 222233333333444445568999999999888888777776665554555
Q ss_pred HHHHHHH
Q 008345 449 QRTCTNA 455 (569)
Q Consensus 449 ~~~~~~~ 455 (569)
.+.....
T Consensus 702 ~~~l~~~ 708 (730)
T COG1198 702 QKLLRAW 708 (730)
T ss_pred HHHHHHH
Confidence 5554333
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=9.5e-33 Score=296.70 Aligned_cols=331 Identities=23% Similarity=0.296 Sum_probs=235.9
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+.-.+++||.+.+...| |+++++++|||+|||.++..-|+..+...+ ..++++++||+-|+.|....+..++..
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ~a~~~~~~~~-- 132 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQIACFSIYLIP-- 132 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHHHHHHhhccCc--
Confidence 34469999999998888 999999999999999999988988887653 357999999999999988767766644
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCCCC
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENR 200 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~~~ 200 (569)
..+....||......+..+...++|+|+||.-+.+-|.+.....++.+.++||||||+..... |..-+...+..-....
T Consensus 133 ~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 133 YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccc
Confidence 566677777555555556677899999999999887776333346899999999999988654 4444445555544455
Q ss_pred cEEEEEecCChHHHHHHHhcCC---------------------CCeeeeec----cc-----------------------
Q 008345 201 QTLLFSATLPSALAEFAKAGLR---------------------DPHLVRLD----VD----------------------- 232 (569)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~---------------------~~~~i~~~----~~----------------------- 232 (569)
|+|++||||.+..........+ +...+..+ ..
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~ 292 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLI 292 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcc
Confidence 9999999997654443321100 00000000 00
Q ss_pred -----c-c-----------cCCCc--eEE--EEEc---------------c-----------------------------
Q 008345 233 -----T-K-----------ISPDL--KLA--FFTL---------------R----------------------------- 247 (569)
Q Consensus 233 -----~-~-----------~~~~~--~~~--~~~~---------------~----------------------------- 247 (569)
. . ..++. .+. |..+ +
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~ 372 (746)
T KOG0354|consen 293 EISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARL 372 (746)
T ss_pred ccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchh
Confidence 0 0 00000 000 0000 0
Q ss_pred --------------------hhhHHHHHHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHH---CCCCceeecC----
Q 008345 248 --------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYG---- 298 (569)
Q Consensus 248 --------------------~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~---~~~~~~~i~g---- 298 (569)
...|...+...+.+.. .+..++||||.++..|+.+..+|.. .|+.+..+-|
T Consensus 373 ~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s 452 (746)
T KOG0354|consen 373 IRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKS 452 (746)
T ss_pred hHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecccc
Confidence 0001222222222211 3567899999999999999999873 2444444433
Q ss_pred ----CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 299 ----DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 299 ----~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
+|+|.+..+++++|++|+++|||||+++++|+||+.+++||-||.-.++...+||.|| ||+ +.|.++.+.+..+
T Consensus 453 ~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 453 TQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred ccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 7999999999999999999999999999999999999999999999999999999999 998 5689988888655
Q ss_pred HHHHHH
Q 008345 375 MAYLLD 380 (569)
Q Consensus 375 ~~~~~~ 380 (569)
...+..
T Consensus 531 ~~~~E~ 536 (746)
T KOG0354|consen 531 VIEFER 536 (746)
T ss_pred HHHHHH
Confidence 544443
No 79
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.8e-31 Score=256.69 Aligned_cols=202 Identities=46% Similarity=0.823 Sum_probs=186.3
Q ss_pred CCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 25 f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
|+++++++.+++.+.++||..|+++|+++++.++.|+++++.+|||+|||++|++|+++.+.......+.+++|++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999999999999999988753335788999999999
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC
Q 008345 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (569)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~ 184 (569)
|+.|+...++.+....++.+..++|+.........+..+++|+|+||+++.+++.. ....+.+++++|+||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccC
Confidence 99999999999988888999999999998877777777899999999999998886 45778999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeee
Q 008345 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (569)
Q Consensus 185 f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (569)
+...+..++..++..+|++++|||+++.+..++..++.+|..+
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999999999988765
No 80
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.7e-30 Score=298.58 Aligned_cols=314 Identities=19% Similarity=0.251 Sum_probs=220.5
Q ss_pred CCCCCChHHHH---HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHh
Q 008345 41 KGYKVPTPIQR---KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKEL 116 (569)
Q Consensus 41 ~g~~~~t~iQ~---~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~ 116 (569)
..|...-|+.. +.+..+..++.+|+.|+||||||+ .+|.+..-... .....+++.-|.|--|..++.. .+++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~--~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR--GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC--CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 45665555554 455566567778999999999999 56765432221 1122456667988777776653 3345
Q ss_pred cccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC-ccCCCChHHH-HHHHHH
Q 008345 117 GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILG 194 (569)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah-~l~~~~f~~~-l~~i~~ 194 (569)
+...|-.++.-+.. +.+ ...+..|+++|+|.|++.+.. ...+.++++|||||+| ++++.+|... +..++.
T Consensus 136 g~~lG~~VGY~vR~---~~~---~s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 GTPLGEKVGYKVRF---HDQ---VSSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred CCCcceEEeeEEcC---Ccc---cCCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 43333333332222 222 245688999999999999875 3458999999999999 6899888765 555554
Q ss_pred hcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch------hhHHHHHHHHHHHhcC-CCC
Q 008345 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHIS-SDQ 267 (569)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~L~~ll~~~~~-~~~ 267 (569)
.. +..|+++||||++. ..+.+.+...| .+.+.... ..+...|..... .++...+...+..... ..+
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~G 280 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPG 280 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCC
Confidence 44 47899999999974 45666654444 44444322 123444443321 1234445555544322 357
Q ss_pred cEEEEEcChhhHHHHHHHHHHCCC---CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCC
Q 008345 268 QTLIFVSTKHHVEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (569)
Q Consensus 268 ~~IIF~~t~~~~~~l~~~L~~~~~---~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p 344 (569)
.+|||+++..+++.+.+.|...+. .+..+||+|++.+|..++..+ +..+|+|||+++++|||||++++||+++++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 899999999999999999987643 477899999999999886543 346899999999999999999999999854
Q ss_pred ------------------CChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 345 ------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 345 ------------------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
.|...|.||+||+||.| +|.||.+++.++..
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 35578999999999997 89999999987654
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.3e-31 Score=289.45 Aligned_cols=320 Identities=21% Similarity=0.272 Sum_probs=237.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|--.-=.+..| -|+.++||+|||++|.+|++..+.. |..++|++||++||.|.++++..+.+++
T Consensus 79 lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 4654 788887665455455 5999999999999999999977653 4569999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCCCCC-----CCeeEEEEeCCCccCCC-----------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM----------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~~~l-----~~l~~iViDEah~l~~~----------- 183 (569)
|+++.+++||.+...+...+ .+||+||||++| ++++...-.+++ ..+.++|+||||.++=.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 99999999998877665444 689999999999 999987433444 58999999999987610
Q ss_pred -----ChHHHHHHHHHhcCCC--------------CcEEEEE--------------------------------------
Q 008345 184 -----GFAEQLHKILGQLSEN--------------RQTLLFS-------------------------------------- 206 (569)
Q Consensus 184 -----~f~~~l~~i~~~~~~~--------------~q~ll~S-------------------------------------- 206 (569)
.....+..++..+... .+.+.+|
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 1233333333333211 1222222
Q ss_pred ------------------------------------------------------------------------------ec
Q 008345 207 ------------------------------------------------------------------------------AT 208 (569)
Q Consensus 207 ------------------------------------------------------------------------------AT 208 (569)
+|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 22
Q ss_pred CChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH
Q 008345 209 LPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (569)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~ 288 (569)
...+-.+|...|- ...+.++...+....-....++....+|..++...+.+....+.|+||||+|+..++.++.+|..
T Consensus 389 a~te~~Ef~~iY~--l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 389 ADTEAYEFQQIYN--LEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred ChhHHHHHHHHhC--CCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 2111111111111 01111111100000001112344467799999999988888999999999999999999999999
Q ss_pred CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC---------------------------------
Q 008345 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------- 335 (569)
Q Consensus 289 ~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v--------------------------------- 335 (569)
.|+++..+|+.+.+.++..+.+.|+.|. |+|||++|+||+||.--
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 99999999999999732
Q ss_pred -----CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 336 -----~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
-+||-...+.|.+.=.|-.||+||.|.+|.+-.|++-+|
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 267877788888888999999999999999999998654
No 82
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.4e-30 Score=286.61 Aligned_cols=148 Identities=20% Similarity=0.364 Sum_probs=131.4
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEE
Q 008345 26 ESLNLSPNVFRAIK-----RKGYKVP---TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (569)
Q Consensus 26 ~~l~l~~~~~~~l~-----~~g~~~~---t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~L 97 (569)
+++++..++.+.+. .+||..| ||+|.+++|.++.++++++.++||+|||++|++|++..+.. +..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCeE
Confidence 45678899988887 6899998 99999999999999999999999999999999999988764 23489
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCCCCCC-------Ce
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSLK-------SV 169 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~~~l~-------~l 169 (569)
||+||++||.|+.+++..+.+++++++.+++||.+...+...+ .++|+||||++| ++++.. +.+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999998887655 599999999999 999986 335554 45
Q ss_pred eEEEEeCCCccC
Q 008345 170 EYVVFDEADCLF 181 (569)
Q Consensus 170 ~~iViDEah~l~ 181 (569)
.++|+||||.|+
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999987
No 83
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=5.4e-29 Score=274.57 Aligned_cols=319 Identities=21% Similarity=0.267 Sum_probs=243.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHH-HHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l-~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.|.. |++.|--.-=.+..|+ |+.++||+|||+++.+|++ ..+. |..+-|++||..||.|.++++..+.++
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 5766 8999987765666664 9999999999999999996 4542 445789999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCC-----CCCCCeeEEEEeCCCccCC-----------
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED-----MSLKSVEYVVFDEADCLFG----------- 182 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~-----~~l~~l~~iViDEah~l~~----------- 182 (569)
.|+++++++|+.+..++...+ .++|++|||++| ++++...-. ..+..+.++|+||||.++=
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999999888776664 499999999999 999976321 2367889999999998761
Q ss_pred -----CChHHHHHHHHHhcCCC--------C-------------------------------------------------
Q 008345 183 -----MGFAEQLHKILGQLSEN--------R------------------------------------------------- 200 (569)
Q Consensus 183 -----~~f~~~l~~i~~~~~~~--------~------------------------------------------------- 200 (569)
......+..+...+... .
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 01233333333333210 0
Q ss_pred ------------------------------------------------------------cEEEEEecCChHHHHHHHhc
Q 008345 201 ------------------------------------------------------------QTLLFSATLPSALAEFAKAG 220 (569)
Q Consensus 201 ------------------------------------------------------------q~ll~SAT~~~~~~~~~~~~ 220 (569)
.+.+||+|...+..+|...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 23445555544444444433
Q ss_pred CCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCC
Q 008345 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (569)
Q Consensus 221 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l 300 (569)
-- ..+.++...+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 387 ~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NL--DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CC--CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 22 222222211110000011334456779999999998876788999999999999999999999999999999995
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC--------------------------------------CEEEEcC
Q 008345 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------------DNVINWD 342 (569)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v--------------------------------------~~VI~~d 342 (569)
+.+|+..+..|+.+...|+|||++|+||+||+-- -+||-..
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999853 2688888
Q ss_pred CCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 343 ~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
.|.|.+.-.|-.||+||.|.+|.+-.|++-+|
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 89999999999999999999999999998654
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=2.6e-29 Score=266.59 Aligned_cols=332 Identities=20% Similarity=0.241 Sum_probs=253.9
Q ss_pred CCCCCCCCCCCHHHHHHH-HHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCC
Q 008345 21 KSGGFESLNLSPNVFRAI-KRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG 93 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l-~~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g 93 (569)
...+.-.++.+..+.+.+ ..++|+ ||..|++++..|... .+=+++|..|||||.++++.++..+. .|
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----~G 311 (677)
T COG1200 238 QKRSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----AG 311 (677)
T ss_pred hhccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----cC
Confidence 333444556666655555 778999 999999999999864 34689999999999999999987765 48
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH---HHc-CCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
.++..++||--||.|.+..+.++....|+++..++|......... .+. +..+|+|||-.-+. +...+.++
T Consensus 312 ~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~~L 385 (677)
T COG1200 312 YQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFHNL 385 (677)
T ss_pred CeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeecce
Confidence 899999999999999999999998888999999999877654433 333 46999999954332 46789999
Q ss_pred eEEEEeCCCccCCCChHHHHHHHHHhcCC-CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch
Q 008345 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ 248 (569)
Q Consensus 170 ~~iViDEah~l~~~~f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 248 (569)
.++|+||=|| |.-.....++.... .+-.+.|||||=|. .++-..+++-..-.++.-......+....+ +
T Consensus 386 gLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i---~ 455 (677)
T COG1200 386 GLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVI---P 455 (677)
T ss_pred eEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEe---c
Confidence 9999999999 55555556666655 67899999997432 344444444433333322222222222222 3
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChh--------hHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCce
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKH--------HVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~--------~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ 318 (569)
.++...++..+.+.+.++.++.+.|+-.+ .++.++..|... ++.+..+||.|+.++...++.+|++|+++
T Consensus 456 ~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 456 HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred cccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc
Confidence 35666777788877788999999998554 345666666643 56689999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCCEEEEcCC-CCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 319 FLIVTDVAARGIDIPLLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 319 ILV~Tdv~arGlDip~v~~VI~~d~-p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
|||||.|++.|+|+|+.++.|..+. ..-..+.-|--||+||.+..+.|++++.+..
T Consensus 536 ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999887764 2345677899999999999999999998865
No 85
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=277.98 Aligned_cols=335 Identities=19% Similarity=0.264 Sum_probs=242.2
Q ss_pred CCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcC-----CCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 41 KGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-----~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.+|..++.+|..++|.+.. +.+++++||||||||-+|++.++..+.++. ...+.++++|+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5888999999999998876 678999999999999999999999888632 2356789999999999999887544
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC--CCCCCCeeEEEEeCCCccCCCChHHHHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE--DMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~--~~~l~~l~~iViDEah~l~~~~f~~~l~~i 192 (569)
+-....|+++.-++|+....... -..++|+|+||+.+--.-++.. .--++.+.++||||+|.+-+.. ...+..|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-GpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-GPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcc-cchHHHH
Confidence 43345689999999987665443 2469999999998743222211 1226779999999999988753 3444444
Q ss_pred HH-------hcCCCCcEEEEEecCChHHHHHHHhcCCCC--eeeeeccccccCCCceEEEEEcchh---hH----HHHHH
Q 008345 193 LG-------QLSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQE---EK----HAALL 256 (569)
Q Consensus 193 ~~-------~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~~~~~~~~---~k----~~~L~ 256 (569)
+. ......+++++|||+|+- .+.+...--+| .+...+... .+-.+.+.++..+.. .. .....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~y-RPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRY-RPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccc-cccceeeeEEeeecccchhhhhhHHHHHH
Confidence 33 344567899999999974 33443322232 233333322 233466666655443 11 12223
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC----C-------------------CCceeecCCCCHHHHHHHHHHHh
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----G-------------------LEPSVCYGDMDQDARKIHVSRFR 313 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~----~-------------------~~~~~i~g~l~~~~R~~~l~~F~ 313 (569)
..+.+.+..+.+++|||.++..+-..++.|.+. | ....++|.+|...+|.-+...|.
T Consensus 340 ~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~ 419 (1230)
T KOG0952|consen 340 DKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK 419 (1230)
T ss_pred HHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh
Confidence 334445567899999999998888888877642 1 22567899999999999999999
Q ss_pred cCCceEEEEeccccccCCCCCCCEEE----EcCCCC------ChhHHHHHhhccccC--CCccEEEEEeccccHHHHHHH
Q 008345 314 ARKTMFLIVTDVAARGIDIPLLDNVI----NWDFPP------KPKIFVHRVGRAARA--GRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 314 ~g~~~ILV~Tdv~arGlDip~v~~VI----~~d~p~------s~~~~~qrvGR~gR~--g~~G~~i~~v~~~e~~~~~~l 381 (569)
.|.++||+||..+|+|+|+|.--++| .||.-. ..-+.+|..||+||. +..|.++++-+.+.+.++..+
T Consensus 420 ~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 420 EGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred cCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999765555 233221 345679999999996 456999988888877766554
No 86
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.7e-29 Score=285.93 Aligned_cols=335 Identities=20% Similarity=0.219 Sum_probs=216.6
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (569)
.|.|+|..++..++.. ..+++...+|.|||.-..+.+-+.+... ...++|||||+ .|..||...+.+. +++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~k---F~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRR---FNL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHH---hCC
Confidence 4999999998877653 4699999999999988765554444332 23579999998 8899988776432 235
Q ss_pred eEEEEEcCCCHHHHHH---HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcC-
Q 008345 123 RISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS- 197 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~---~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~- 197 (569)
....+.++ ....... ......+++|+|.+.+...-.....+.-..++++|+||||++-... -.......+..+.
T Consensus 225 ~~~i~~~~-~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~ 303 (956)
T PRK04914 225 RFSLFDEE-RYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE 303 (956)
T ss_pred CeEEEcCc-chhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh
Confidence 54444332 2221110 0112467999999877642211112333478999999999986311 0111123333332
Q ss_pred CCCcEEEEEecCCh-H------------------HHHHHH-------------hcCC-CC--------------------
Q 008345 198 ENRQTLLFSATLPS-A------------------LAEFAK-------------AGLR-DP-------------------- 224 (569)
Q Consensus 198 ~~~q~ll~SAT~~~-~------------------~~~~~~-------------~~l~-~~-------------------- 224 (569)
....++++||||-. . ...|.. ..+. ++
T Consensus 304 ~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 304 VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEP 383 (956)
T ss_pred ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhH
Confidence 34578999999821 0 011110 0000 00
Q ss_pred -------------------------------eeeeecccc-ccCCCceEEEEEc--------------------------
Q 008345 225 -------------------------------HLVRLDVDT-KISPDLKLAFFTL-------------------------- 246 (569)
Q Consensus 225 -------------------------------~~i~~~~~~-~~~~~~~~~~~~~-------------------------- 246 (569)
..++-.... ..-+.....-+.+
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~ 463 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQ 463 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHH
Confidence 000000000 0000000000000
Q ss_pred ------------chhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHH-HHCCCCceeecCCCCHHHHHHHHHHHh
Q 008345 247 ------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFR 313 (569)
Q Consensus 247 ------------~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L-~~~~~~~~~i~g~l~~~~R~~~l~~F~ 313 (569)
..+.|...|..+++.. .+.++||||+++..+..+.+.| ...|+.+..+||+|++.+|..+++.|+
T Consensus 464 ~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~ 541 (956)
T PRK04914 464 IYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA 541 (956)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh
Confidence 0112444566666544 4689999999999999999999 467999999999999999999999999
Q ss_pred cC--CceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCc
Q 008345 314 AR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (569)
Q Consensus 314 ~g--~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~ 389 (569)
++ ..+|||||+++++|+|++.+++|||||+|++|..|.||+||++|.|++|.+.+++...+-.....+...+...+
T Consensus 542 ~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 542 DEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred cCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 84 59999999999999999999999999999999999999999999999998877776544333344444454433
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=7.5e-30 Score=286.17 Aligned_cols=331 Identities=21% Similarity=0.309 Sum_probs=259.7
Q ss_pred HHHHH-HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 008345 34 VFRAI-KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 34 ~~~~l-~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
....+ ...|+...+|-|.++|..++.|+|+++..|||.||+++|.+|++-. .| -.|||+|-++|......
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-------~g-itvVISPL~SLm~DQv~- 322 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-------GG-VTVVISPLISLMQDQVT- 322 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-------CC-ceEEeccHHHHHHHHHH-
Confidence 44444 4569999999999999999999999999999999999999998743 23 68999999999875443
Q ss_pred HHHhcccCCCeEEEEEcCCCHHHHH---HHHcC---CCCEEEECcHHHHHHHhhc-CCCCCCC---eeEEEEeCCCccCC
Q 008345 113 TKELGRYTDLRISLLVGGDSMESQF---EELAQ---NPDIIIATPGRLMHHLSEV-EDMSLKS---VEYVVFDEADCLFG 182 (569)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~~~---~~l~~---~~~IiV~Tp~rl~~~l~~~-~~~~l~~---l~~iViDEah~l~~ 182 (569)
.+ ...++....+.++....++. +.+.. ..+|+..||+.+...-.-. ....+.. +.++||||||..+.
T Consensus 323 --~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 323 --HL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred --hh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh
Confidence 33 23578999999998876443 33333 4789999999875422111 1122344 88999999999999
Q ss_pred CC--h---HHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHh--cCCCCeeeeeccccccCCCceEEEEEcchhhHHHHH
Q 008345 183 MG--F---AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 183 ~~--f---~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (569)
|| | +..+..+..+.+. ..++.+|||.+..+..-+-. .+.+|.++ ......+++...+..-........+
T Consensus 400 WgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 400 WGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred hcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCceEEEEeccCccchHHH
Confidence 87 3 3345555555654 88999999998887764444 45566644 2334445665554443333334444
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
+..++.. ...+.+||||.++..|+.++..|...++.+...|++|...+|..+...|..++++|+|||=+...|||-|+|
T Consensus 476 ~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DV 554 (941)
T KOG0351|consen 476 LEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDV 554 (941)
T ss_pred HHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCce
Confidence 4555443 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
..||+|.+|.+.+.|.|-+||+||.|....|++|+...|...+..+
T Consensus 555 R~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 555 RFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred eEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 9999999999999999999999999999999999999987766553
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=2.6e-29 Score=282.74 Aligned_cols=311 Identities=19% Similarity=0.212 Sum_probs=206.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc--CCC
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~--~~l 122 (569)
.|+|+|+.+........-+++.||||+|||.+++..+.. +... ....+++|..||++++.|+++.+.++.+. ...
T Consensus 286 ~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~--~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 286 QPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ--GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh--CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 699999988654444566899999999999998876654 3332 12357999999999999999988764322 234
Q ss_pred eEEEEEcCCCHHHHHH--------------------HHc----C---CCCEEEECcHHHHHHHhhcCCCCCCC----eeE
Q 008345 123 RISLLVGGDSMESQFE--------------------ELA----Q---NPDIIIATPGRLMHHLSEVEDMSLKS----VEY 171 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~--------------------~l~----~---~~~IiV~Tp~rl~~~l~~~~~~~l~~----l~~ 171 (569)
.+.+.+|.......+. .+. + -.+|+|||...++......+...+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 6777777654321111 111 1 26899999998884443322222222 248
Q ss_pred EEEeCCCccCCCChHHHHHHHHHhc-CCCCcEEEEEecCChHHHHH-HHhcCCC--------Ceeeeecc---------c
Q 008345 172 VVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEF-AKAGLRD--------PHLVRLDV---------D 232 (569)
Q Consensus 172 iViDEah~l~~~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~~-~~~~l~~--------~~~i~~~~---------~ 232 (569)
|||||+|-.-. -...-+..+++.+ .....+|++|||+|..+... ...+-.. +..+.... .
T Consensus 443 vIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 99999998743 2334445555443 23567999999999887653 3332111 11111100 0
Q ss_pred cc---cCCCceEEEEEc--chhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC---CCceeecCCCCHHH
Q 008345 233 TK---ISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---LEPSVCYGDMDQDA 304 (569)
Q Consensus 233 ~~---~~~~~~~~~~~~--~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~---~~~~~i~g~l~~~~ 304 (569)
.. ........+... ........++..+.+....+.+++|||||++.++.+++.|.+.+ ..+..+||.+.+.+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 00 000111111111 11112234555555555578899999999999999999998764 57899999999998
Q ss_pred H----HHHHHHH-hcCC---ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCC
Q 008345 305 R----KIHVSRF-RARK---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (569)
Q Consensus 305 R----~~~l~~F-~~g~---~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~ 362 (569)
| +.+++.| ++|+ ..|||+|+++++|+||+ ++++|....| .+.++||+||++|.++
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 8 4567888 5565 47999999999999994 7999998777 5799999999999876
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.2e-29 Score=274.42 Aligned_cols=320 Identities=20% Similarity=0.248 Sum_probs=236.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |++.|--+-=.+..|+ |+...||+|||++..+|++-.... |.++-|++||--||.|-++++..+.++.
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4766 9999987765666665 999999999999999998866553 7789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccCCC-----------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM----------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~~~----------- 183 (569)
|++++++.|+.+..+....+ .+||+.+|...| +++|... ...-...+.+.|+||+|.++=.
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 99999999887766554443 689999999877 4555442 1112356789999999986510
Q ss_pred -----ChHHHHHHHHHhcCCC--------------------C--------------------------------------
Q 008345 184 -----GFAEQLHKILGQLSEN--------------------R-------------------------------------- 200 (569)
Q Consensus 184 -----~f~~~l~~i~~~~~~~--------------------~-------------------------------------- 200 (569)
.....+..+...+... +
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 1222222222221110 0
Q ss_pred ----------------------------------------------------------------------cEEEEEecCC
Q 008345 201 ----------------------------------------------------------------------QTLLFSATLP 210 (569)
Q Consensus 201 ----------------------------------------------------------------------q~ll~SAT~~ 210 (569)
++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 2334444443
Q ss_pred hHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC
Q 008345 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (569)
Q Consensus 211 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~ 290 (569)
.+-.+|...+-- ..+.++...+....-....+......|..++...+......+.++||||+|+..++.++..|.+.|
T Consensus 387 ~e~~Ef~~iY~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 387 TEEEEFREIYNM--EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHHhCC--CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 333333332211 122222211110000111234455778899999998777789999999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC---CCC-----EEEEcCCCCChhHHHHHhhccccCCC
Q 008345 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGR 362 (569)
Q Consensus 291 ~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip---~v~-----~VI~~d~p~s~~~~~qrvGR~gR~g~ 362 (569)
+++..+|+++.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.+.+.|.|+.||+||+|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999998888887777777766 999999999999995 788 99999999999999999999999999
Q ss_pred ccEEEEEecccc
Q 008345 363 TGTAFSFVTSED 374 (569)
Q Consensus 363 ~G~~i~~v~~~e 374 (569)
+|.+..|++.+|
T Consensus 543 ~G~s~~~~sleD 554 (796)
T PRK12906 543 PGSSRFYLSLED 554 (796)
T ss_pred CcceEEEEeccc
Confidence 999999999865
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=6.2e-29 Score=265.04 Aligned_cols=292 Identities=23% Similarity=0.292 Sum_probs=203.8
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|+|+|.+++..+.. ++..++.+|||+|||.+++-.+-.. +..+||||||++|+.||.+.+..+....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 599999999999988 8899999999999999877333322 2239999999999999987666543221
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
-.+..+.|+.. .. .. ..|.|+|...+..... ...+....+++|||||||++....|..-...+ ....
T Consensus 108 -~~~g~~~~~~~-~~-----~~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~~ 174 (442)
T COG1061 108 -DEIGIYGGGEK-EL-----EP-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAAY 174 (442)
T ss_pred -cccceecCcee-cc-----CC-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHHhh----hccc
Confidence 12333333321 10 11 4699999998876420 12244557999999999998876644333333 2222
Q ss_pred cEEEEEecCChHHHH---HHHhcCCCCeeeeeccccccC----CCceEEEEEcc--------------------------
Q 008345 201 QTLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKIS----PDLKLAFFTLR-------------------------- 247 (569)
Q Consensus 201 q~ll~SAT~~~~~~~---~~~~~l~~~~~i~~~~~~~~~----~~~~~~~~~~~-------------------------- 247 (569)
.++++||||+..-.. .....++ |..+......... .......+.+.
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhh
Confidence 289999998643211 1111111 3333333221111 01111111110
Q ss_pred ------------hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC
Q 008345 248 ------------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (569)
Q Consensus 248 ------------~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g 315 (569)
...+...+..++..+. .+.+++||+.+..+++.++..|...++ +..++|..++.+|..+++.|+.|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g 331 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTG 331 (442)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcC
Confidence 0112223333333332 578999999999999999999998887 88999999999999999999999
Q ss_pred CceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC
Q 008345 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 316 ~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
++++||++.++.+|+|+|+++++|......|+..|.||+||.-|.
T Consensus 332 ~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 332 GIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999993
No 91
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=2.5e-29 Score=249.50 Aligned_cols=327 Identities=19% Similarity=0.281 Sum_probs=241.8
Q ss_pred HHHHHHHH-CCCCC-ChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 33 NVFRAIKR-KGYKV-PTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 33 ~~~~~l~~-~g~~~-~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
.+-.+|++ .||.. -+|.|.+++..+..+ +||.++.|||+||+++|.+|.+-. .| -.+|++|..+|....
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~g-ITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GG-ITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CC-eEEEehHHHHHHHHH
Confidence 35556655 37764 389999999888764 899999999999999999998754 34 689999999998876
Q ss_pred HHHHHHhcccCCCeEEEEEcCCCHHHHHHHH------cCCCCEEEECcHHH-----HHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGRL-----MHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l------~~~~~IiV~Tp~rl-----~~~l~~~~~~~l~~l~~iViDEah 178 (569)
.+-+.++- +.+..+....+..+.-+.+ ..+..++.-||+.- ..+|+. -.+-..+.|+|+||||
T Consensus 78 iDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 78 IDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhh
Confidence 76666653 4555555444443333222 23566899999753 333332 1233458899999999
Q ss_pred ccCCCC--hHH---HHHHHHHhcCCCCcEEEEEecCChHHHHHHHh--cCCCCeeeeeccccccCCCceEEEEEcch---
Q 008345 179 CLFGMG--FAE---QLHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQ--- 248 (569)
Q Consensus 179 ~l~~~~--f~~---~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 248 (569)
..+.|| |.. .+-++...++ ....+.++||-++.+.+-+-. -+.+|+-+.-.+. ...++ |+.+.-
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~--FR~NL---FYD~~~K~~ 225 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT--FRDNL---FYDNHMKSF 225 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc--hhhhh---hHHHHHHHH
Confidence 999887 333 3344444443 567999999999888764443 4567754432111 11111 222221
Q ss_pred -hhHHHHHHHHHHHhcCC-----------CCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 008345 249 -EEKHAALLYMIREHISS-----------DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (569)
Q Consensus 249 -~~k~~~L~~ll~~~~~~-----------~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~ 316 (569)
.+-...|.++....+.+ .+=.||||.|+..||.++..|...|+.....|.++...+|..+.+.|-+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 12334444444443331 123799999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHH
Q 008345 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (569)
Q Consensus 317 ~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~ 379 (569)
+.|+++|.....|+|-|+|..||++++|.+..-|.|-.||+||.|...+|-++++.+|...+.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876554
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=5e-27 Score=261.93 Aligned_cols=324 Identities=21% Similarity=0.224 Sum_probs=255.1
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 28 LNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 28 l~l~~~~~~~l~-~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
++.+.+...... ..+|. -||-|..||..+... .|=++||..|-|||.+++=+++.... .|++|.|||
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----~GKQVAvLV 650 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-----DGKQVAVLV 650 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----CCCeEEEEc
Confidence 345555555554 46887 899999999998763 57899999999999999966665543 589999999
Q ss_pred CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
||--||.|-++.+++-.....+++..+.-=.+..++...+. +..||||||- .++. +...+++++++||||
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~--kdv~FkdLGLlIIDE 724 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS--KDVKFKDLGLLIIDE 724 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC--CCcEEecCCeEEEec
Confidence 99999999999888755677889888887777776655443 4799999993 3333 578899999999999
Q ss_pred CCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHH
Q 008345 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
.|+ |.-.-.+-++.+..+.-++-+||||=|..-.++-.++.+..+|..++....+ .+.|+.-.+ ...+.
T Consensus 725 EqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p---V~T~V~~~d---~~~ir 793 (1139)
T COG1197 725 EQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP---VKTFVSEYD---DLLIR 793 (1139)
T ss_pred hhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc---eEEEEecCC---hHHHH
Confidence 999 6666677777788889999999999776677888888888777655443321 222322222 12233
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~ 334 (569)
..|..-+..++++-...|..+..+.++..|+.. ...+.+.||.|+..+-+.++..|.+|+.+|||||-+++.|||||+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPn 873 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPN 873 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCC
Confidence 334444457899999999999999999999876 345788999999999999999999999999999999999999999
Q ss_pred CCEEEEcCC-CCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 335 LDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 335 v~~VI~~d~-p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
++.+|.-+- -.-..+..|.-||+||..+.+.||.++.++.
T Consensus 874 ANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 874 ANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred CceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 998874432 2345788999999999999999999998753
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=233.03 Aligned_cols=336 Identities=18% Similarity=0.269 Sum_probs=260.7
Q ss_pred CCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 26 ESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 26 ~~l~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
+++++|....+.|++ ...+..+|.|..+|+..+.|.|+++..|||.||+++|.+|++.. .| -+||+||...
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-------dg-~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-------DG-FALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-------CC-ceEeechhHH
Confidence 567889888888865 46778999999999999999999999999999999999998754 34 4899999999
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH---HHc---CCCCEEEECcHHHHH------HHhhcCCCCCCCeeEE
Q 008345 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELA---QNPDIIIATPGRLMH------HLSEVEDMSLKSVEYV 172 (569)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~---~l~---~~~~IiV~Tp~rl~~------~l~~~~~~~l~~l~~i 172 (569)
|.....-+++.++ +....+....+.++... .+. ....++..||+.+.. -++ +.+....+.+|
T Consensus 146 lmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle--ka~~~~~~~~i 219 (695)
T KOG0353|consen 146 LMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE--KALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH--HHhhcceeEEE
Confidence 9987777777765 66666666666554221 222 246689999998743 232 24567788999
Q ss_pred EEeCCCccCCCC--hHH--HHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch
Q 008345 173 VFDEADCLFGMG--FAE--QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ 248 (569)
Q Consensus 173 ViDEah~l~~~~--f~~--~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~ 248 (569)
.+||+|....|| |.. ....|+.+--++..+++++||-++.+-+-++..+.-...+.+... -..+++...+..-+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEeeeCCC
Confidence 999999999887 322 233455555567889999999988877777665442222222221 223444444333322
Q ss_pred --hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 249 --EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 249 --~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
++-...+..+++..+ .+...||||-+...++.++..|...|+.....|..|.+.++.-.-+.|..|+++|+|+|-..
T Consensus 299 n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred ChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 334555666665443 47788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------HhhccccCCCc
Q 008345 327 ARGIDIPLLDNVINWDFPPKPKIFVH-------------------------------------------RVGRAARAGRT 363 (569)
Q Consensus 327 arGlDip~v~~VI~~d~p~s~~~~~q-------------------------------------------rvGR~gR~g~~ 363 (569)
..|||-|++..||+..+|.+.+.|.| -.||+||.+.+
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~ 457 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMK 457 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCc
Confidence 99999999999999999999999999 67999999999
Q ss_pred cEEEEEeccccHHH
Q 008345 364 GTAFSFVTSEDMAY 377 (569)
Q Consensus 364 G~~i~~v~~~e~~~ 377 (569)
..|++++.-.|+-.
T Consensus 458 a~cilyy~~~difk 471 (695)
T KOG0353|consen 458 ADCILYYGFADIFK 471 (695)
T ss_pred ccEEEEechHHHHh
Confidence 99999998776543
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.2e-26 Score=255.25 Aligned_cols=320 Identities=20% Similarity=0.221 Sum_probs=233.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|--.-=.+..| -|+.++||+|||++|.+|++..... |..|.|++|+++||.|..+++..+..+.
T Consensus 79 lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 4655 788887554444444 5999999999999999999876653 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCCCCC-----CCeeEEEEeCCCccCCC-----------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM----------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~~~l-----~~l~~iViDEah~l~~~----------- 183 (569)
|+++.++.++.+...... .-.+||++|||++| +++|...-.++. ..+.++|+||+|.++-.
T Consensus 151 Glsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 999999999988654322 23799999999999 998876312333 67889999999987621
Q ss_pred -----ChHHHHHHHHHhcC-------------------CCCc--------------------------------------
Q 008345 184 -----GFAEQLHKILGQLS-------------------ENRQ-------------------------------------- 201 (569)
Q Consensus 184 -----~f~~~l~~i~~~~~-------------------~~~q-------------------------------------- 201 (569)
.....+..++..+. ...+
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 12222222222211 0111
Q ss_pred ------------------------------------------------------------------------------EE
Q 008345 202 ------------------------------------------------------------------------------TL 203 (569)
Q Consensus 202 ------------------------------------------------------------------------------~l 203 (569)
+-
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence 12
Q ss_pred EEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHH
Q 008345 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (569)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~ 283 (569)
+||+|...+..+|...|-- ..+.++...+....-....++....+|+.++...+.+....+.++||||+|...++.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l--~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGL--DTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred cccCCChHHHHHHHHHhCC--CEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 2333322222222222111 11111111100000001123344577999999999888889999999999999999999
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC----------------------------
Q 008345 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---------------------------- 335 (569)
Q Consensus 284 ~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v---------------------------- 335 (569)
.+|...++++..+|+.+++.++..+.+.|+.|. |+|||++|+||+||.--
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 99999999999999732
Q ss_pred ---------CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 336 ---------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 336 ---------~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
-+||-...+.|.+.=.|-.||+||.|.+|.+-.|++-+|
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 368888888888888999999999999999999998655
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.9e-26 Score=219.81 Aligned_cols=302 Identities=21% Similarity=0.263 Sum_probs=220.1
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
++||.|+++-..+. +.+|.+++|.||+|||... .+.++...+ .|.++.|.+|....+..++..++.- +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~a--F~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN----QGGRVCIASPRVDVCLELYPRLKQA--FS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh----cCCeEEEecCcccchHHHHHHHHHh--hc
Confidence 68999998876654 4689999999999999863 344444444 4788999999999999999888763 34
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHH-HHhcCCC
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI-LGQLSEN 199 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i-~~~~~~~ 199 (569)
+..+.+++|+..... ...++|+|...|++.-. .++++||||+|...-.. ...+... -......
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccccC-CHHHHHHHHHhhccc
Confidence 688899999865322 27899999998887654 36789999999854221 1222222 2333445
Q ss_pred CcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHH-------HHHHHHHHHhcCCCCcEEEE
Q 008345 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH-------AALLYMIREHISSDQQTLIF 272 (569)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~-------~~L~~ll~~~~~~~~~~IIF 272 (569)
.-++.+|||+|+.+..-+..+ +-..+.+....-..+-+...|+.+..-.|. ..|..+|.+....+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 678999999999877665544 233344444333333333334444332222 37888999888889999999
Q ss_pred EcChhhHHHHHHHHHH-CCC-CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC--CCChh
Q 008345 273 VSTKHHVEFLNVLFRE-EGL-EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--PPKPK 348 (569)
Q Consensus 273 ~~t~~~~~~l~~~L~~-~~~-~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~--p~s~~ 348 (569)
+++....+.++..|.. ... .+..+|+. ...|.+..++||+|++++||+|.+++||+.+|++++++.-.- -.+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 9999999999999954 333 34677765 446888899999999999999999999999999999664332 25778
Q ss_pred HHHHHhhccccCCC--ccEEEEEeccc
Q 008345 349 IFVHRVGRAARAGR--TGTAFSFVTSE 373 (569)
Q Consensus 349 ~~~qrvGR~gR~g~--~G~~i~~v~~~ 373 (569)
..+|.+||+||.-. +|.++.|-...
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 89999999999643 48777766543
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=8.1e-27 Score=256.12 Aligned_cols=342 Identities=20% Similarity=0.293 Sum_probs=247.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCC------CCeEEEEEcCc
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ------GGVRALILSPT 102 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~------~g~~~Lil~Pt 102 (569)
++.+-..+.. |+..++++|.+..+..+.+ .+++++||||+|||-++++-+++.+..+... ...++++++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444555544 7778999999999999887 5799999999999999999999999877652 33579999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCC-CCCeeEEEEeCCCccC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMS-LKSVEYVVFDEADCLF 181 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~-l~~l~~iViDEah~l~ 181 (569)
.+|+..+...+.+-....|+++.-.+|......+. -.+..|+||||+..--+-++.++.. .+-+.++|+||.|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 99999988866666667899999999987644321 2468899999998743333322222 3357889999999986
Q ss_pred CCChHHHHHHHHHh-------cCCCCcEEEEEecCChH--HHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh--
Q 008345 182 GMGFAEQLHKILGQ-------LSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-- 250 (569)
Q Consensus 182 ~~~f~~~l~~i~~~-------~~~~~q~ll~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-- 250 (569)
+.. ...+..|..+ -...++++++|||+|+- +..|..... +.+...+... .+-.+.+.|+.+....
T Consensus 451 DdR-GpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~sy-RpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 451 DDR-GPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSSY-RPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-chHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc--ccccccCccc-CcCCccceEeccccCCch
Confidence 542 3334333322 23478899999999984 223333222 3344444333 3345777777665432
Q ss_pred -HHH----HHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH-------------------------------------
Q 008345 251 -KHA----ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------- 288 (569)
Q Consensus 251 -k~~----~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~------------------------------------- 288 (569)
+.. +..+-+-++..+ .++|||+-+++++-..+..++.
T Consensus 527 ~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdL 605 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDL 605 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHH
Confidence 222 233334445454 8999999998877666655542
Q ss_pred CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE----EcCC------CCChhHHHHHhhccc
Q 008345 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWDF------PPKPKIFVHRVGRAA 358 (569)
Q Consensus 289 ~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI----~~d~------p~s~~~~~qrvGR~g 358 (569)
..+..+++|.+|+..+|....+.|+.|.++|||+|-.+|+|+|+|.-+++| .||+ +.+|.+..|+.||+|
T Consensus 606 LpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 606 LPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred hhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 124467899999999999999999999999999999999999999988887 4443 457889999999999
Q ss_pred cCCCc--cEEEEEeccccHHHHHHH
Q 008345 359 RAGRT--GTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 359 R~g~~--G~~i~~v~~~e~~~~~~l 381 (569)
|.+.+ |..+++-...|..|...+
T Consensus 686 rp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 686 RPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCccCcCCceeeccCchHhhhhHHh
Confidence 98654 777777777777766554
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=4.6e-26 Score=263.46 Aligned_cols=309 Identities=18% Similarity=0.257 Sum_probs=197.3
Q ss_pred CChHHHHHHHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 45 VPTPIQRKTMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~-----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.|+|+|.+||..+.. .+.++++++||||||.+++ .++.++.... ...++|||+|+++|+.|+.+.++.++-.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 599999999987753 3679999999999998754 3444554332 2468999999999999999988886422
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhc----CCCCCCCeeEEEEeCCCccCC----C--------
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFG----M-------- 183 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~----~~~~l~~l~~iViDEah~l~~----~-------- 183 (569)
.+.....+++....... .......|+|+|..++...+... ..+.+..+++||+||||+... +
T Consensus 490 ~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 22122112221111111 11345789999999987664321 124577889999999999631 0
Q ss_pred ---ChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH-------------Hhc-CCC---Ceeeeecccc---ccCCC--
Q 008345 184 ---GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA-------------KAG-LRD---PHLVRLDVDT---KISPD-- 238 (569)
Q Consensus 184 ---~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~-------------~~~-l~~---~~~i~~~~~~---~~~~~-- 238 (569)
.+...+..++..+. ...|+|||||-.....+. ..+ +.+ |..+...... .....
T Consensus 568 ~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 12456677777653 467999999864322211 111 110 1111110000 00000
Q ss_pred c--------eEEEEEcch---------------hhHHHHHHHHHHHhcC--CCCcEEEEEcChhhHHHHHHHHHHC----
Q 008345 239 L--------KLAFFTLRQ---------------EEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (569)
Q Consensus 239 ~--------~~~~~~~~~---------------~~k~~~L~~ll~~~~~--~~~~~IIF~~t~~~~~~l~~~L~~~---- 289 (569)
+ .......+. ......++..+.+.+. ..+++||||.+..|++.+.+.|.+.
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0 000000000 0011112222222221 2479999999999999998887653
Q ss_pred --CC---CceeecCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCC
Q 008345 290 --GL---EPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (569)
Q Consensus 290 --~~---~~~~i~g~l~~~~R~~~l~~F~~g~~-~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~ 362 (569)
++ .+..++|+.+ .+..++++|+++.. .|+|++|++++|+|+|.+++||+++++.|...|+|++||+.|...
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 22 3456888875 46778999999886 699999999999999999999999999999999999999999643
No 98
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=5.5e-26 Score=211.59 Aligned_cols=165 Identities=38% Similarity=0.593 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEE
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~ 126 (569)
||+|.++++.+.+|+++++.||||+|||++|++|++..+... ...+++|++|+++|+.|+.+.+..+....++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999888764 12479999999999999999999998888899999
Q ss_pred EEcCCCHH-HHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC--CCcEE
Q 008345 127 LVGGDSME-SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTL 203 (569)
Q Consensus 127 ~~gg~~~~-~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~--~~q~l 203 (569)
++|+.... .....+..+++|+|+||++|.+.+... ..++.++++|||||+|.+....+...+..++..+.. +.|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 99999866 444455678999999999999999873 347778999999999999988888889898888743 58999
Q ss_pred EEEecCChHHHH
Q 008345 204 LFSATLPSALAE 215 (569)
Q Consensus 204 l~SAT~~~~~~~ 215 (569)
++|||+++.++.
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966553
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=241.36 Aligned_cols=344 Identities=19% Similarity=0.217 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHH--HHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 29 NLSPNVFRAIKRKGYKVPTPIQRKTM--PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 29 ~l~~~~~~~l~~~g~~~~t~iQ~~~i--~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+++....-....+|...++.+|.+|+ |.++++++.|..+||+.|||++.-+.|+..+... +..++.+.|....+
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv 282 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIV 282 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehh
Confidence 34444444446679999999999998 7788999999999999999999999999887764 45589999988888
Q ss_pred HHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh-cCCCCCCCeeEEEEeCCCccCCCCh
Q 008345 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGF 185 (569)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~-~~~~~l~~l~~iViDEah~l~~~~f 185 (569)
..-...+..+....|+.+...+|....... .+.-++.|||-++-..+++. .+.-.+..+++||+||.|.+.+.+.
T Consensus 283 ~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~r 358 (1008)
T KOG0950|consen 283 QEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGR 358 (1008)
T ss_pred HHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecccc
Confidence 877778888888889999888877665543 24567999999875444433 1223567899999999999999887
Q ss_pred HHHHHHHHHhc-----CCCCcEEEEEecCChH--HHHHHHhcCCCC--eeeeeccccccCCCceEE------------EE
Q 008345 186 AEQLHKILGQL-----SENRQTLLFSATLPSA--LAEFAKAGLRDP--HLVRLDVDTKISPDLKLA------------FF 244 (569)
Q Consensus 186 ~~~l~~i~~~~-----~~~~q~ll~SAT~~~~--~~~~~~~~l~~~--~~i~~~~~~~~~~~~~~~------------~~ 244 (569)
...+..++.++ ....|++++|||+|+. +..+..+.+... .-+.+....+....+... +.
T Consensus 359 g~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~ 438 (1008)
T KOG0950|consen 359 GAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYS 438 (1008)
T ss_pred chHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhh
Confidence 77777776653 3346799999999874 444554433211 111111100100000000 00
Q ss_pred EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH------------------------------------
Q 008345 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------ 288 (569)
Q Consensus 245 ~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~------------------------------------ 288 (569)
....++..+.+..++.+.+..+.++||||+++..|+.++..+..
T Consensus 439 ~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~ 518 (1008)
T KOG0950|consen 439 SNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLA 518 (1008)
T ss_pred hhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHh
Confidence 00001112355566666667778899999999999877654432
Q ss_pred --CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC----CCChhHHHHHhhccccCCC
Q 008345 289 --EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----PPKPKIFVHRVGRAARAGR 362 (569)
Q Consensus 289 --~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~----p~s~~~~~qrvGR~gR~g~ 362 (569)
..+.+.++|.+++.+.|+.+...|++|.+.|++||+.++.|+++|.-.++|-.-. +.+.-.|.|++|||||+|-
T Consensus 519 ~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 519 KTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred eeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 0134789999999999999999999999999999999999999999998884432 2356779999999999986
Q ss_pred c--cEEEEEeccccHHHHHH
Q 008345 363 T--GTAFSFVTSEDMAYLLD 380 (569)
Q Consensus 363 ~--G~~i~~v~~~e~~~~~~ 380 (569)
. |.+++++.+.|...+..
T Consensus 599 dT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred ccCcceEEEeeccchhHHHH
Confidence 4 99999999998766654
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.4e-24 Score=239.36 Aligned_cols=318 Identities=19% Similarity=0.268 Sum_probs=232.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-H
Q 008345 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-E 115 (569)
Q Consensus 37 ~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~ 115 (569)
-....||+ |-|+|++++..+..|..|+++||||||||.+.-..+...+.. |.++++.+|.++|..|.+..+. +
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHHH
Confidence 34567888 999999999999999999999999999999988777666553 6679999999999999987544 4
Q ss_pred hcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHh
Q 008345 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (569)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~ 195 (569)
|++. .-.+++++|+.+ +..+..++|+|.+-|-.++.+ +...+..+..|||||+|.+.+..-.-.+.+++-.
T Consensus 186 fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred hhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 6543 223566777654 345688999999888777776 4566889999999999999998888889999999
Q ss_pred cCCCCcEEEEEecCChHHHH--HHHhcCCCCeeeeeccccccCCCceEEEEEc-------chhhH-----H---------
Q 008345 196 LSENRQTLLFSATLPSALAE--FAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-------RQEEK-----H--------- 252 (569)
Q Consensus 196 ~~~~~q~ll~SAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~k-----~--------- 252 (569)
+|...+++++|||+|+..+. |....-..|..+.. .+.. +..+.+.++.- ....+ .
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~-t~~R-pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS-TEHR-PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe-ecCC-CCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 99999999999999887543 33322233333322 2222 22233322211 00000 0
Q ss_pred ---------------------------------HHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH-----------
Q 008345 253 ---------------------------------AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------- 288 (569)
Q Consensus 253 ---------------------------------~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----------- 288 (569)
..+...+.. ...-++|+|+-+++.|+..+..+..
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 011111111 1345899999999999877666541
Q ss_pred -----------------CCCC-------------ceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 289 -----------------EGLE-------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 289 -----------------~~~~-------------~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
.++. ..++|++|=+..+..+...|..|-++|+++|.+.+.|+|.|.-++|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv 492 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV 492 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccccee
Confidence 1121 3478999999999999999999999999999999999999987776
Q ss_pred E----EcC----CCCChhHHHHHhhccccCCCc--cEEEEEeccc
Q 008345 339 I----NWD----FPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (569)
Q Consensus 339 I----~~d----~p~s~~~~~qrvGR~gR~g~~--G~~i~~v~~~ 373 (569)
+ -+| -.-++..|.|..||+||.|.+ |.++++-.+.
T Consensus 493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 6 222 235688999999999999976 8777775554
No 101
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.2e-24 Score=230.92 Aligned_cols=315 Identities=20% Similarity=0.240 Sum_probs=228.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.+|. |-+.|++||-++..|..|++.|+|.+|||.++-.++.-. .. .+.+++|-+|-++|-.|-++.++.-..
T Consensus 294 ~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~----h~TR~iYTSPIKALSNQKfRDFk~tF~-- 365 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK----HMTRTIYTSPIKALSNQKFRDFKETFG-- 365 (1248)
T ss_pred CCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh----hccceEecchhhhhccchHHHHHHhcc--
Confidence 4776 999999999999999999999999999999876554321 11 478899999999999998877665322
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
.+.+++|+.. +...+..+|+|.+-|-.++-+..+ -+.++++|||||+|-+.+....-.+.+++-.+|...
T Consensus 366 --DvgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 366 --DVGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred --ccceeeccee-------eCCCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 2337777653 346688999999999888887433 378899999999999998777778889999999999
Q ss_pred cEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch--------------------------------
Q 008345 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-------------------------------- 248 (569)
Q Consensus 201 q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------------------------- 248 (569)
++|++|||.|+..+..-|.+-..-..+.+....+.+-.+.+.++.-.+
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999999987654444443222222222222222222222221100
Q ss_pred --------------------------------hhH-HHHHHHHHHHhcC-CCCcEEEEEcChhhHHHHHHHHHHCCC---
Q 008345 249 --------------------------------EEK-HAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGL--- 291 (569)
Q Consensus 249 --------------------------------~~k-~~~L~~ll~~~~~-~~~~~IIF~~t~~~~~~l~~~L~~~~~--- 291 (569)
..+ ....+.++..... .--|+||||-+++.|+..+++|....+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 001 0112333322211 345899999999999999999875321
Q ss_pred ------------------------------------CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 292 ------------------------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 292 ------------------------------------~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
..+++||++=+--.+.+.-.|..|-++||+||...|.|+|.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 15688999999999999999999999999999999999999987
Q ss_pred CEEEEcC--------CCCChhHHHHHhhccccCCCc--cEEEEEeccc
Q 008345 336 DNVINWD--------FPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (569)
Q Consensus 336 ~~VI~~d--------~p~s~~~~~qrvGR~gR~g~~--G~~i~~v~~~ 373 (569)
++|+.-= .--.|-.|.|++||+||.|-+ |+++++....
T Consensus 676 tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 7776211 112467899999999998864 7777666543
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=9.4e-23 Score=231.96 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=217.7
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
+|+|+|..++..+. .|.+.|+...+|.|||+..+.. +..+...... ..++|||||. .+..||...+.+++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~-~gp~LIVvP~-SlL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGI-TGPHMVVAPK-STLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCC-CCCEEEEeCh-HHHHHHHHHHHHHC--C
Confidence 58999999998765 4678999999999999865433 3333332222 2358999997 55677888888876 3
Q ss_pred CCeEEEEEcCCCHHHHHH---HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 121 DLRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~---~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
.+++..++|......... ......+|+|+|++.+...... +.-..+++||+||||++-+.. ..+...+..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~ 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHHHHhh
Confidence 467777777543322211 1234689999999988765433 333467899999999988643 45566666665
Q ss_pred CCCcEEEEEecCC-hHHHHHHHh-cCCCC----------------------------------eeeee---ccccccCCC
Q 008345 198 ENRQTLLFSATLP-SALAEFAKA-GLRDP----------------------------------HLVRL---DVDTKISPD 238 (569)
Q Consensus 198 ~~~q~ll~SAT~~-~~~~~~~~~-~l~~~----------------------------------~~i~~---~~~~~~~~~ 238 (569)
. ...+++||||- +.+.++... .+-.| ..++- +.....++.
T Consensus 319 a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 T-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred c-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 4 45688999972 122221110 00000 00000 000001111
Q ss_pred ceEEEEEcc---------------------------------------------------------------hhhHHHHH
Q 008345 239 LKLAFFTLR---------------------------------------------------------------QEEKHAAL 255 (569)
Q Consensus 239 ~~~~~~~~~---------------------------------------------------------------~~~k~~~L 255 (569)
.. ..+.+. ...|...|
T Consensus 398 ~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 398 KE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 11 111111 11233344
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC---CceEEEEeccccccCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR---KTMFLIVTDVAARGIDI 332 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g---~~~ILV~Tdv~arGlDi 332 (569)
..+|......+.++|||+......+.+..+|...++....+||+++..+|..+++.|.+. ..-+|++|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 445555555678999999999999999999999999999999999999999999999763 23578999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHHhhccccCCCccE--EEEEecccc
Q 008345 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSED 374 (569)
Q Consensus 333 p~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~--~i~~v~~~e 374 (569)
..+++||+||++++|....|++||+.|.|++.. +|.|++.+-
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999999999999999999999998754 466666653
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.2e-22 Score=225.81 Aligned_cols=339 Identities=19% Similarity=0.264 Sum_probs=238.6
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~ 124 (569)
-+....+.+..+..+.-+++.|+||||||+ .+|.+-.-... ..+..+.+.=|.|-=|.-+.+ ..++++...|-.|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 455566777777778889999999999998 45543221111 223457777799977777765 4455666556555
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc-cCCCChHHH-HHHHHHhcCCCCcE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQ-LHKILGQLSENRQT 202 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~-l~~~~f~~~-l~~i~~~~~~~~q~ 202 (569)
+..+-.++. ...+..|-++|.|.|++.+.. +..++.+++|||||+|+ .++.++.-. +..++...++.-++
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 555443322 234677999999999999986 45689999999999995 444444433 34456667777899
Q ss_pred EEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc-hhh-HHHHHHHHHHHhcC-CCCcEEEEEcChhhH
Q 008345 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEE-KHAALLYMIREHIS-SDQQTLIFVSTKHHV 279 (569)
Q Consensus 203 ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-k~~~L~~ll~~~~~-~~~~~IIF~~t~~~~ 279 (569)
|+||||+... -...++++..++.++.... .++..|.... .++ -...+...+..... ..+.+|||.+...+.
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999998753 3444566555666654432 2444442222 233 34455555554433 457899999999999
Q ss_pred HHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC------------
Q 008345 280 EFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------ 343 (569)
Q Consensus 280 ~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~------------ 343 (569)
+...+.|.+ ....+..+||.|+..+..++++--..|..+|+++|++|+.+|.||++.+||+-+.
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999997 3467889999999999998877666676779999999999999999999996654
Q ss_pred ------CCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHhh
Q 008345 344 ------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIA 414 (569)
Q Consensus 344 ------p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (569)
|-|-....||.||+||.+ +|.||-+++.++.. .+...+.+|....++.+....+...-.
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~-----------~~~~~t~PEIlrtdLs~~vL~l~~~G~ 417 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL-----------AFPEFTLPEILRTDLSGLVLQLKSLGI 417 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH-----------hcccCCChhhhhcchHHHHHHHHhcCC
Confidence 345666899999999984 69999999986532 233344556666677777766665544
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.2e-22 Score=211.97 Aligned_cols=361 Identities=16% Similarity=0.223 Sum_probs=238.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeEE
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRIS 125 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~ 125 (569)
+.+-.+.+..+..++-+|+.|+||||||. .+|-+-.-... ...|. +.+--|.|--|.-+++ +..+.+...|-.++
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~-~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGF-ASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhccc-ccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 33344666677778889999999999998 66654222222 22344 7777899988887776 55566665555554
Q ss_pred EEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc-cCCCChHH-HHHHHHHhcCCCCcEE
Q 008345 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAE-QLHKILGQLSENRQTL 203 (569)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~-l~~~~f~~-~l~~i~~~~~~~~q~l 203 (569)
..+-=++.. .....|.+.|.|.|++.+.. +..++.+++||+||||+ .+..+..- -+..+++. ++.-+++
T Consensus 129 Y~IRFed~t------s~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklI 199 (674)
T KOG0922|consen 129 YTIRFEDST------SKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLI 199 (674)
T ss_pred eEEEecccC------CCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEE
Confidence 443222111 23467999999999998875 46689999999999995 33322222 22333333 3457899
Q ss_pred EEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhc--CCCCcEEEEEcChhhHHH
Q 008345 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEF 281 (569)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~~~ 281 (569)
++|||+..+ ....++.+-.++.+.... -.++..|..-+..+-..+.+..+.+.. .+.+-+|||....++++.
T Consensus 200 imSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 200 IMSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred EEeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 999998743 444555554455544332 224444544444444444443333321 456689999999999999
Q ss_pred HHHHHHHC----C--C--CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC----------
Q 008345 282 LNVLFREE----G--L--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------- 343 (569)
Q Consensus 282 l~~~L~~~----~--~--~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~---------- 343 (569)
+.+.|.+. + . -+..+||.|+.++..++++.--.|..+|+++|++|+..+.||++.+||+-++
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99988764 1 1 2467999999999998887777789999999999999999999999996553
Q ss_pred --------CCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHHHHHHhhc
Q 008345 344 --------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (569)
Q Consensus 344 --------p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (569)
|-|-..-.||.||+||.| +|.||-+++.+++.. +...+.+|....++......++..-.+
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~-----------~~~~~~PEI~R~~Ls~~vL~Lkalgi~ 421 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK-----------MPLQTVPEIQRVNLSSAVLQLKALGIN 421 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh-----------cccCCCCceeeechHHHHHHHHhcCCC
Confidence 446677899999999985 699999999886532 233333444444566666666655555
Q ss_pred CCccccCCchhhhHHHHHHHHHH
Q 008345 416 GETIYGRFPQTVIDLVSDRVREI 438 (569)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~l 438 (569)
+.--|..+.++..+.....++.|
T Consensus 422 d~l~F~f~d~P~~~~l~~AL~~L 444 (674)
T KOG0922|consen 422 DPLRFPFIDPPPPEALEEALEEL 444 (674)
T ss_pred CcccCCCCCCCChHHHHHHHHHH
Confidence 44334444444444444445443
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=7.8e-23 Score=226.17 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=116.5
Q ss_pred cchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 008345 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (569)
Q Consensus 246 ~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (569)
....+|..++...+......+.++||||+|+..++.++..|...|+++..+|+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 34467999999999887778999999999999999999999999999999997 6889999999999999999999999
Q ss_pred ccccCCCC---CCC-----EEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 326 AARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 326 ~arGlDip---~v~-----~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
|+||+||+ .|. +||+++.|.+.+.|.||.||+||+|.+|.++.|++.+|
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999999 443 45999999999999999999999999999999999865
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=1.1e-22 Score=229.62 Aligned_cols=329 Identities=22% Similarity=0.237 Sum_probs=221.3
Q ss_pred ChHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 46 PTPIQRKTMPLILSG---A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g---~-dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+++.|..++..++.. . .++++||||+|||.+.+.+++..+... .....+++++.|++.++.++++.++.+....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 599999999888763 4 789999999999999999999887764 22467899999999999999998888655443
Q ss_pred CeEEEEEcCCCHHHHHHHH---------------cCCCCEEEECcHHHHHHHhhcCCCC-C--CCeeEEEEeCCCccCCC
Q 008345 122 LRISLLVGGDSMESQFEEL---------------AQNPDIIIATPGRLMHHLSEVEDMS-L--KSVEYVVFDEADCLFGM 183 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l---------------~~~~~IiV~Tp~rl~~~l~~~~~~~-l--~~l~~iViDEah~l~~~ 183 (569)
+.....+|..... ....- ..-..++++||-.++........+. + -..+++||||+|.+.+.
T Consensus 275 ~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSSSKEP-LLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred cccccccccccch-hhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 3332223332211 11110 0012344555544433211111111 0 12357999999998876
Q ss_pred ChHHHHHHHHHhc-CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc-cCCCceEEEEEcchhhHH--HHHHHHH
Q 008345 184 GFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKH--AALLYMI 259 (569)
Q Consensus 184 ~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~k~--~~L~~ll 259 (569)
.....+..++..+ ..+..++++|||+|+.+.+.....+.+...+....... ......+........... ..+...+
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 3333333333333 23678999999999999988888776554444321100 001111110000000011 2345555
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHh----cCCceEEEEeccccccCCCCCC
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~----~g~~~ILV~Tdv~arGlDip~v 335 (569)
....+.+.+++|.|||+..|..++..|+..+..+..+||.+....|.+.+.... .+...|+|+|++++-|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 556678899999999999999999999998878999999999999987776544 57889999999999999996 6
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCC--CccEEEEEeccccHHHHH
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAYLL 379 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g--~~G~~i~~v~~~e~~~~~ 379 (569)
+++|- -+...+..+||+||++|.| ..|.++.+...+..++..
T Consensus 513 d~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~ 556 (733)
T COG1203 513 DVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLK 556 (733)
T ss_pred Ceeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchh
Confidence 66663 3455789999999999999 568888877766554443
No 107
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.8e-22 Score=210.41 Aligned_cols=311 Identities=18% Similarity=0.228 Sum_probs=223.9
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~ 124 (569)
.+++-.+.+.++..++-+++.|.||||||. .+|.+-.-... ...|+++-+--|.|.-|..+.. +.++++...|-.|
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGy-tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGY-TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccc-ccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 455666667777778889999999999998 67765332222 3346667777899999888775 5556654443333
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC-ccCCCChHHHHHHHHHhcCCCCcEE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah-~l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
+.-+--.+. -....-|-++|.|.|++-+.. ..+|.++++||+|||| |.+..+..-.+..-+.++++.-.++
T Consensus 343 GYsIRFEdc------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDC------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred ceEEEeccc------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 222111110 112345779999999988764 5789999999999999 4555555555555566677888999
Q ss_pred EEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh--cCCCCcEEEEEcChhhHHH
Q 008345 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH--ISSDQQTLIFVSTKHHVEF 281 (569)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~--~~~~~~~IIF~~t~~~~~~ 281 (569)
+.|||+..+ -...++.+..++.++.... .+...|...+..+-.++.+.-+.+. ..+.+-+|||....+..+.
T Consensus 415 IsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 415 ISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 999998643 4556777766766654432 3455555566656555555444432 2356789999999888887
Q ss_pred HHHHHHHC----C-----CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCC--------
Q 008345 282 LNVLFREE----G-----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP-------- 344 (569)
Q Consensus 282 l~~~L~~~----~-----~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p-------- 344 (569)
..+.|.+. | +-+..+|++|+++....+++---.|-.+|++||++|...+.|+++.+||+.++.
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 77766542 2 346789999999999999888778889999999999999999999999977653
Q ss_pred ----------CChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 345 ----------PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 345 ----------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
-|-..-.||.||+||.| +|.|+-+++...
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 34566799999999986 699999999654
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.4e-21 Score=213.08 Aligned_cols=280 Identities=21% Similarity=0.306 Sum_probs=193.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|| .||..|+-....+..|+.+-+.||||.|||.--++..+ .+.. .|.+++||+||..|+.|+++.++.|+...
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 377 59999999999999999999999999999974332222 2222 47899999999999999999999998765
Q ss_pred C-CeEEE-EEcCCCHHHHH---HHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-----------
Q 008345 121 D-LRISL-LVGGDSMESQF---EEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----------- 183 (569)
Q Consensus 121 ~-l~~~~-~~gg~~~~~~~---~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~----------- 183 (569)
+ ..+.. .++..+..+.. +.+ .++.||+|+|..-|...... +.-.++++|++|.+|.++-.
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 5 44444 44543433322 222 35899999999888777765 32346889999999976522
Q ss_pred ChHH-----------------------HHHHHHHhc--------CCCCcEEEEEecCChHH--HHHHHhcCCCCeeeeec
Q 008345 184 GFAE-----------------------QLHKILGQL--------SENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 184 ~f~~-----------------------~l~~i~~~~--------~~~~q~ll~SAT~~~~~--~~~~~~~l~~~~~i~~~ 230 (569)
||.+ ++.++++.. ....+++..|||..+.- ..+.+..++ . .+.
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg-F---evG 305 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG-F---EVG 305 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC-C---ccC
Confidence 2222 111111111 12357899999974431 123332222 1 111
Q ss_pred cccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcC---hhhHHHHHHHHHHCCCCceeecCCCCHHHHHH
Q 008345 231 VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST---KHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307 (569)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t---~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~ 307 (569)
.......++...|......+ .+..+++.. +...|||+++ ++.+++++++|+..|+++..+|+. .+.
T Consensus 306 ~~~~~LRNIvD~y~~~~~~e---~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~ 374 (1187)
T COG1110 306 SGGEGLRNIVDIYVESESLE---KVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEE 374 (1187)
T ss_pred ccchhhhheeeeeccCccHH---HHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chh
Confidence 11222234444444443334 444455544 5689999999 899999999999999999999874 366
Q ss_pred HHHHHhcCCceEEEEe----ccccccCCCCC-CCEEEEcCCC
Q 008345 308 HVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFP 344 (569)
Q Consensus 308 ~l~~F~~g~~~ILV~T----dv~arGlDip~-v~~VI~~d~p 344 (569)
.++.|..|++++||++ .++.||+|+|. +.++|.|+.|
T Consensus 375 ~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 375 ALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 7899999999999976 78999999996 7889988877
No 109
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=4.3e-23 Score=217.39 Aligned_cols=308 Identities=18% Similarity=0.245 Sum_probs=223.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HhcccCCCeE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRI 124 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-~~~~~~~l~~ 124 (569)
+-|.|..+|..+-.+..|++.|.|.+|||.++-.++...|.. ..|+++-+|-.+|-.|-++.+. +|+ .+
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-----DV 199 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-----DV 199 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-----cc
Confidence 789999999999999999999999999999988888777765 4689999999999999887654 454 35
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
++.+|+.+. ..++.-+|+|.+-|-.++-+. .--...+..|||||+|-|-+....-.+.+-+-.+|.+.+.++
T Consensus 200 GLMTGDVTI-------nP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 200 GLMTGDVTI-------NPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred ceeecceee-------CCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEE
Confidence 566776542 345678999999888888763 334778999999999999876655556666777899999999
Q ss_pred EEecCChHHHH--HHHhcCCCCeeeeeccccccCCCceEEEE---------Ecch-----hhHHH---------------
Q 008345 205 FSATLPSALAE--FAKAGLRDPHLVRLDVDTKISPDLKLAFF---------TLRQ-----EEKHA--------------- 253 (569)
Q Consensus 205 ~SAT~~~~~~~--~~~~~l~~~~~i~~~~~~~~~~~~~~~~~---------~~~~-----~~k~~--------------- 253 (569)
+|||+|+..+. |+...-..|..+....- .+..+++..+ .+.. ++.+.
T Consensus 272 LSATiPNA~qFAeWI~~ihkQPcHVVYTdy--RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~ 349 (1041)
T KOG0948|consen 272 LSATIPNARQFAEWICHIHKQPCHVVYTDY--RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGK 349 (1041)
T ss_pred EeccCCCHHHHHHHHHHHhcCCceEEeecC--CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccc
Confidence 99999987542 33333345544433221 1222332212 1111 11111
Q ss_pred --------------------HHHHHHHHhc-CCCCcEEEEEcChhhHHHHHHHHHHCCC---------------------
Q 008345 254 --------------------ALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGL--------------------- 291 (569)
Q Consensus 254 --------------------~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~--------------------- 291 (569)
.+..+++... ....++|||+-+++.|+.++-.+.+..+
T Consensus 350 ~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls 429 (1041)
T KOG0948|consen 350 KKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS 429 (1041)
T ss_pred cccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence 2222222211 1346899999999999987766654221
Q ss_pred ------------------CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cCCC----C
Q 008345 292 ------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WDFP----P 345 (569)
Q Consensus 292 ------------------~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d~p----~ 345 (569)
.+.++||++-+--.+-+.-.|..|-+++|+||...+-|+|.|.-++|.- ||-- -
T Consensus 430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwi 509 (1041)
T KOG0948|consen 430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWI 509 (1041)
T ss_pred hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeee
Confidence 2568999999998888888999999999999999999999998777662 2211 1
Q ss_pred ChhHHHHHhhccccCCCc--cEEEEEeccc
Q 008345 346 KPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (569)
Q Consensus 346 s~~~~~qrvGR~gR~g~~--G~~i~~v~~~ 373 (569)
+.-.|+|+.||+||.|.+ |.+|++++..
T Consensus 510 ssGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 510 SSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cccceEEecccccccCCCCCceEEEEecCc
Confidence 345699999999999875 8888888764
No 110
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.1e-21 Score=198.19 Aligned_cols=395 Identities=17% Similarity=0.221 Sum_probs=271.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
-++|...+.++..++.++++---..+..+.+.+..+..++-+++.|.||||||. .+|-+..-...+. ...+..--|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~--~~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSH--LTGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhh--ccceeecCc
Confidence 789999999999999999877666788888888888889999999999999998 5565533222211 244667779
Q ss_pred cHHHHHHHHH-HHHHhcccCCCeEEEEEcCCCHHHHHHHHcC-CCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 102 TRDLALQTLK-FTKELGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 102 treLa~Q~~~-~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
.|.-|.++.. +..++ ++..+--+|-. -.++.... +.-.-.+|.|.|++.... ...+..+++||+||||.
T Consensus 100 rrvaamsva~RVadEM----Dv~lG~EVGys---IrfEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEM----DVTLGEEVGYS---IRFEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHE 170 (699)
T ss_pred hHHHHHHHHHHHHHHh----ccccchhcccc---ccccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhh
Confidence 9998888775 33333 22222222211 00111000 011226788888776543 56689999999999995
Q ss_pred -cCCCC-hHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 008345 180 -LFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (569)
Q Consensus 180 -l~~~~-f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (569)
.+..+ ...-+.+++..- +..+++.+|||+.. .-.+.++.++.++.+... ..++..|..-...+...+.++
T Consensus 171 RtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHH
Confidence 22222 222334444444 47889999999753 356677888888877641 234444444444555555555
Q ss_pred HHHHh--cCCCCcEEEEEcChhhHHHHHHHHHHC---------CCCceeecCCCCHHHHHHHHHHH---hcC--CceEEE
Q 008345 258 MIREH--ISSDQQTLIFVSTKHHVEFLNVLFREE---------GLEPSVCYGDMDQDARKIHVSRF---RAR--KTMFLI 321 (569)
Q Consensus 258 ll~~~--~~~~~~~IIF~~t~~~~~~l~~~L~~~---------~~~~~~i~g~l~~~~R~~~l~~F---~~g--~~~ILV 321 (569)
.+.+. ....+-++||....++.+...+.+... .+.+..+| +.+...+++-- ++| ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 55442 234567999999999888877776632 24566777 22222222111 122 457999
Q ss_pred EeccccccCCCCCCCEEEEcCC------------------CCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHH
Q 008345 322 VTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383 (569)
Q Consensus 322 ~Tdv~arGlDip~v~~VI~~d~------------------p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~ 383 (569)
+|.++...+.++++.+||..++ |-|...-.||.||+||. ++|.|+.++++.
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~---------- 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE---------- 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH----------
Confidence 9999999999999999997664 45666779999999997 789999999865
Q ss_pred HhCCCccCCCChHHHHhhhhhHHHHHHHHhhcCCccccCCchhhhHHHHHHHHHH-----HHhchhhHHHHHHH
Q 008345 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI-----IDSSADLNSLQRTC 452 (569)
Q Consensus 384 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l-----~~~~~~l~~l~~~~ 452 (569)
++++++.+.+.++....++......+++.-.++...+...+++..+.++..++.+ ++++.++..+...+
T Consensus 388 ~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~im 461 (699)
T KOG0925|consen 388 AFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIM 461 (699)
T ss_pred hhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhh
Confidence 6677888888888888899999999999888888888888888899888887764 55556666554443
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=5.6e-21 Score=219.84 Aligned_cols=333 Identities=21% Similarity=0.264 Sum_probs=210.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~----~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
+++...+.+...||+ ++|.|.+.++ .+..++++++.|+||+|||++|++|++.... .+.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----~~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----TEKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----CCCeEEEEeCcHHH
Confidence 345677778888998 8999998665 4556899999999999999999999987654 25689999999999
Q ss_pred HHHHHH-HHHHhcccCC--CeEEEEEcCCCHH---H-----------------------H--------------------
Q 008345 106 ALQTLK-FTKELGRYTD--LRISLLVGGDSME---S-----------------------Q-------------------- 136 (569)
Q Consensus 106 a~Q~~~-~~~~~~~~~~--l~~~~~~gg~~~~---~-----------------------~-------------------- 136 (569)
..|+.. .+..+.+..+ ++++.+.|+.++- . |
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999865 5666655444 7777777664320 0 0
Q ss_pred -H------------------------HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-------C
Q 008345 137 -F------------------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------G 184 (569)
Q Consensus 137 -~------------------------~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-------~ 184 (569)
| ......+||||+...-|++.+.... .-+....++||||||++.+. .
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 0111246899999998887764422 22455689999999987521 0
Q ss_pred h-----HH----------------------------------------------------------------HHHHHHHh
Q 008345 185 F-----AE----------------------------------------------------------------QLHKILGQ 195 (569)
Q Consensus 185 f-----~~----------------------------------------------------------------~l~~i~~~ 195 (569)
+ .. ++...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 00 00000000
Q ss_pred ---------------------c---------------------------CCCCcEEEEEecCCh--HHHHHHH-hcCCCC
Q 008345 196 ---------------------L---------------------------SENRQTLLFSATLPS--ALAEFAK-AGLRDP 224 (569)
Q Consensus 196 ---------------------~---------------------------~~~~q~ll~SAT~~~--~~~~~~~-~~l~~~ 224 (569)
. +....++++|||++. ....+.+ .++.+.
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 112357899999963 2333332 334333
Q ss_pred eeeeeccccccC--CCceEEEE-Ec------chhhHHHHHHHHHHHhcC-CCCcEEEEEcChhhHHHHHHHHHHC----C
Q 008345 225 HLVRLDVDTKIS--PDLKLAFF-TL------RQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREE----G 290 (569)
Q Consensus 225 ~~i~~~~~~~~~--~~~~~~~~-~~------~~~~k~~~L~~ll~~~~~-~~~~~IIF~~t~~~~~~l~~~L~~~----~ 290 (569)
....+. .+... .+...... .+ ..+.-...+...|.+... .++++|||++|....+.++..|... +
T Consensus 624 ~~~~~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 624 HFNTIE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred ccceec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 322222 11111 11111110 01 112223344444443322 4578999999999999999998752 3
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC--EEEEcCCCCC----h-----------------
Q 008345 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD--NVINWDFPPK----P----------------- 347 (569)
Q Consensus 291 ~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~--~VI~~d~p~s----~----------------- 347 (569)
+. .+..+.+ ..|..+++.|++++..||++|+..++|+|+|+.. .||...+|.. +
T Consensus 703 ~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 703 YE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred ce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 33 2333332 4788899999999999999999999999999865 4666776632 1
Q ss_pred ---------hHHHHHhhccccCCCccEEEEEeccc
Q 008345 348 ---------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 348 ---------~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
..+.|.+||.-|...+.-++++++..
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 12489999999987653345555543
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=1.3e-20 Score=208.43 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ar 328 (569)
..+...|+..+......+.++||||+|+..++.+.+.|.+.|+.+..+||++++.+|..++..|+.|+++|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 44677888888888788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcC-----CCCChhHHHHHhhccccCCCccEEEEEeccccHHHHH
Q 008345 329 GIDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (569)
Q Consensus 329 GlDip~v~~VI~~d-----~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~ 379 (569)
|+|+|.+++||++| +|.+...|+||+||+||. ..|.++.|++..+.....
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQK 559 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHH
Confidence 99999999999998 899999999999999998 689999999976644333
No 113
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.6e-20 Score=202.66 Aligned_cols=319 Identities=20% Similarity=0.196 Sum_probs=228.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |++.|--+.-.++.|+ |+...||+|||++..+|++.... .|..+.|++|+--||.|-++++..+..+.
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4766 9999999988888774 88999999999999999886654 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccCC------------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~~------------ 182 (569)
|++++++.++.+.++....+ .+||+.+|...| +++|..+ ...-...+.+.|+||+|.++-
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999999988766554444 589999999876 4444431 112245678999999997651
Q ss_pred ---CChHHHHHHHHHhcCCC--------C---------------------------------------------------
Q 008345 183 ---MGFAEQLHKILGQLSEN--------R--------------------------------------------------- 200 (569)
Q Consensus 183 ---~~f~~~l~~i~~~~~~~--------~--------------------------------------------------- 200 (569)
......+..+...+.++ .
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 01222223333322211 0
Q ss_pred -----------------------------------------------------------cEEEEEecCChHHHHHHHhcC
Q 008345 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (569)
Q Consensus 201 -----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l 221 (569)
.+.+||+|...+..+|.+.|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 234555555444444444332
Q ss_pred CCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 222 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
-+ .+.++...+....-....++....+|..++...+.+....+.|+||.+.|....+.++..|.+.|+++..++..-.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 21 2222222111100011133445677999999999888889999999999999999999999999999999987644
Q ss_pred HHHHHHHHHHHhcCC-ceEEEEeccccccCCCCCC---------------CEEEEcCCCCChhHHHHHhhccccCCCccE
Q 008345 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL---------------DNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (569)
Q Consensus 302 ~~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip~v---------------~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~ 365 (569)
..+- .++. +.|+ -.|.|||++|.||.||.-- -+||-...|.|.+.-.|-.||+||.|.+|.
T Consensus 463 ~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 3322 2222 3454 3689999999999999732 378988899999999999999999999999
Q ss_pred EEEEecccc
Q 008345 366 AFSFVTSED 374 (569)
Q Consensus 366 ~i~~v~~~e 374 (569)
+-.|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998654
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=6.1e-21 Score=212.50 Aligned_cols=144 Identities=20% Similarity=0.295 Sum_probs=128.4
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ar 328 (569)
..+...++..|......+.++||||+|+..++.+++.|...|+.+..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 34567788888877778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCC-----CCChhHHHHHhhccccCCCccEEEEEecc---------ccHHHHHHHHHHhCCCccCCC
Q 008345 329 GIDIPLLDNVINWDF-----PPKPKIFVHRVGRAARAGRTGTAFSFVTS---------EDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 329 GlDip~v~~VI~~d~-----p~s~~~~~qrvGR~gR~g~~G~~i~~v~~---------~e~~~~~~l~~~l~~~~~~~~ 393 (569)
|+|+|.+++||++|. |.+...|+||+||+||. ..|.+++|++. .|...+.+++..++.+....|
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999884 78999999999999996 78999999984 466677777777777666555
No 115
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.4e-20 Score=196.72 Aligned_cols=366 Identities=17% Similarity=0.226 Sum_probs=235.0
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhcccC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYT 120 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~ 120 (569)
.|......+.+.+..|..++-++++|.||||||. .+|-+-..... ...| -+-+--|.|.-|..+++. ..+++-..
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY-~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGY-ADNG-MIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhccc-ccCC-eeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555666777777777788889999999999998 44433222222 2223 234445999999888764 44554333
Q ss_pred CCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc-cCCCChHHHHHHHHHhcCC
Q 008345 121 DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSE 198 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~-l~~~~f~~~l~~i~~~~~~ 198 (569)
|-.++.-+- |+... ....|-++|.|-|++.... .-.|..+.+||+||||. .++.+..-.+...+-.-..
T Consensus 429 G~~VGYsIR-------FEdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTVGYSIR-------FEDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccccceEEE-------eeecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 333322221 11111 2456889999999876653 45688999999999995 4454444444444444455
Q ss_pred CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHH-HHHHhc-CCCCcEEEEEcCh
Q 008345 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREHI-SSDQQTLIFVSTK 276 (569)
Q Consensus 199 ~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~-ll~~~~-~~~~~~IIF~~t~ 276 (569)
+..+|..||||.. ..|..- +++...+.+.... -.+...|...+.++-..+.+. .+.-++ ...+-+|||....
T Consensus 500 dlKliVtSATm~a--~kf~nf-Fgn~p~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNF-FGNCPQFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred cceEEEeeccccH--HHHHHH-hCCCceeeecCCc---cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 7889999999863 445554 4444444444333 234555666665555544433 222222 2346799999877
Q ss_pred hhHHHHHHHHH----H------CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC---
Q 008345 277 HHVEFLNVLFR----E------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--- 343 (569)
Q Consensus 277 ~~~~~l~~~L~----~------~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~--- 343 (569)
..++-....+. + .++.+..+|+.|+++-..++++.-..|..+++|+|++|...+.+|++.+||..++
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 76665444443 2 2577889999999999988888777888999999999999999999999996664
Q ss_pred ---------------CCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCChHHHHhhhhhHHHH
Q 008345 344 ---------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSK 408 (569)
Q Consensus 344 ---------------p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 408 (569)
|-|-..--||.||+||.| +|.||-+++.+-+ . ..+...+.+|...-++..+...
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay--~--------~eml~stvPEIqRTNl~nvVLl 722 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY--K--------NEMLPSTVPEIQRTNLSNVVLL 722 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH--H--------hhcccCCCchhhhcchhhHHHH
Confidence 445555689999999985 6999999987532 1 1233444555555566666666
Q ss_pred HHHHhhcCCccccCCchhhhHHHHHHHHH
Q 008345 409 IDQAIANGETIYGRFPQTVIDLVSDRVRE 437 (569)
Q Consensus 409 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 437 (569)
++....++..-|..+.++..+.+...+.+
T Consensus 723 LkslgV~dll~FdFmD~Pped~~~~sly~ 751 (1042)
T KOG0924|consen 723 LKSLGVDDLLKFDFMDPPPEDNLLNSLYQ 751 (1042)
T ss_pred HHhcChhhhhCCCcCCCCHHHHHHHHHHH
Confidence 65554444333444445555555544443
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=1.2e-19 Score=202.80 Aligned_cols=311 Identities=20% Similarity=0.182 Sum_probs=185.9
Q ss_pred ChHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 46 PTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 46 ~t~iQ~~~i~~il~----------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
++++|..|+..+.. .+..+++.+||||||++.+..+...+ .. ..+.++|||+|+.+|..|+.+.+..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 78999999877642 24699999999999987665543332 22 2457899999999999999999888
Q ss_pred hcccCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhc-CCCCCCCe-eEEEEeCCCccCCCChHHHHHHH
Q 008345 116 LGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEV-EDMSLKSV-EYVVFDEADCLFGMGFAEQLHKI 192 (569)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~-~~~~l~~l-~~iViDEah~l~~~~f~~~l~~i 192 (569)
++.. ...+..+.......+. ....|+|+|...+...+... ..++...- -+||+||||+.....+. ..
T Consensus 316 ~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~----~~ 385 (667)
T TIGR00348 316 LQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA----KN 385 (667)
T ss_pred hCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH----HH
Confidence 7631 1111223333333333 34789999999997643321 11222111 28999999996644333 33
Q ss_pred H-HhcCCCCcEEEEEecCChHHHH-HHHhcC--CCCeeeeeccccccCCCceEE--EEEcch-----hh-----------
Q 008345 193 L-GQLSENRQTLLFSATLPSALAE-FAKAGL--RDPHLVRLDVDTKISPDLKLA--FFTLRQ-----EE----------- 250 (569)
Q Consensus 193 ~-~~~~~~~q~ll~SAT~~~~~~~-~~~~~l--~~~~~i~~~~~~~~~~~~~~~--~~~~~~-----~~----------- 250 (569)
+ ..+| +...++|||||-..-.. -...+. ....+..........+..... |..... .+
T Consensus 386 l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 386 LKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred HHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3 3444 56799999998432100 001110 011222222222222221111 111000 00
Q ss_pred -----------------------------HHHHHHHHHHHh-----cCCCCcEEEEEcChhhHHHHHHHHHHC-----CC
Q 008345 251 -----------------------------KHAALLYMIREH-----ISSDQQTLIFVSTKHHVEFLNVLFREE-----GL 291 (569)
Q Consensus 251 -----------------------------k~~~L~~ll~~~-----~~~~~~~IIF~~t~~~~~~l~~~L~~~-----~~ 291 (569)
....+...+.++ ...+.+++|||.++.+|..+...|.+. +.
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 001111111111 112589999999999999999888664 23
Q ss_pred CceeecCCCCHH---------------------HHHHHHHHHhc-CCceEEEEeccccccCCCCCCCEEEEcCCCCChhH
Q 008345 292 EPSVCYGDMDQD---------------------ARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (569)
Q Consensus 292 ~~~~i~g~l~~~---------------------~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~ 349 (569)
....+++..+.. .....+++|++ +.++|||++|++..|+|.|.+++++...+-. ...
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~h~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-YHG 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-ccH
Confidence 344555543222 22467888976 6889999999999999999999988755444 456
Q ss_pred HHHHhhccccC-C--C-ccEEEEEec
Q 008345 350 FVHRVGRAARA-G--R-TGTAFSFVT 371 (569)
Q Consensus 350 ~~qrvGR~gR~-g--~-~G~~i~~v~ 371 (569)
++|.+||+.|. + + .|..+-|+.
T Consensus 624 LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 624 LLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHHHhccccCCCCCCEEEEECcC
Confidence 89999999994 3 2 255554444
No 117
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.85 E-value=1.1e-19 Score=200.70 Aligned_cols=333 Identities=11% Similarity=0.040 Sum_probs=207.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHH----HHHH
Q 008345 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES----QFEE 139 (569)
Q Consensus 64 l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~----~~~~ 139 (569)
+..+.+|||||.+|+-.+-+.+. .|.++|||+|++.|+.|+.+.++.... +-.+..++++.+..+ |...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 33444699999999955544443 478899999999999999998876431 256888888877654 3344
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-----CChHHHHHHHHHhcCCCCcEEEEEecCChHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-----~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~ 214 (569)
..+...|||||.+.++ .++.++++||+||.|.-+- ..|+.+-..+++....+..+++.|||++- +
T Consensus 237 ~~G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl--e 306 (665)
T PRK14873 237 LRGQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA--E 306 (665)
T ss_pred hCCCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH--H
Confidence 4557899999999887 7899999999999996552 23667767777777789999999999664 4
Q ss_pred HHHHhcCCCCeeeeeccccccCCCceEEEEEcchh-----------hHHHHHHHHHHHhcCCCCcEEEEEcChhhH----
Q 008345 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-----------EKHAALLYMIREHISSDQQTLIFVSTKHHV---- 279 (569)
Q Consensus 215 ~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~---- 279 (569)
.+.+..-+....+................+..... .-...++..+++.+..+ ++|||+|.+..+
T Consensus 307 s~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 307 AQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 44443333333232222111112223333333211 02346788888888888 999999832221
Q ss_pred -------------------------------------------------------HHHHHHHHHC--CCCceeecCCCCH
Q 008345 280 -------------------------------------------------------EFLNVLFREE--GLEPSVCYGDMDQ 302 (569)
Q Consensus 280 -------------------------------------------------------~~l~~~L~~~--~~~~~~i~g~l~~ 302 (569)
+.+.+.|... +..+.. ++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r----~d- 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT----SG- 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE----EC-
Confidence 1222222221 111221 22
Q ss_pred HHHHHHHHHHhcCCceEEEEec----cccccCCCCCCCEEEEcCC------C---CCh---hHHHHHhhccccCCCccEE
Q 008345 303 DARKIHVSRFRARKTMFLIVTD----VAARGIDIPLLDNVINWDF------P---PKP---KIFVHRVGRAARAGRTGTA 366 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Td----v~arGlDip~v~~VI~~d~------p---~s~---~~~~qrvGR~gR~g~~G~~ 366 (569)
+..+++.|. ++.+|||+|+ +++ ++++.|+..|. | ... ..+.|.+||+||.+..|.+
T Consensus 461 --~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 461 --GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred --hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 234778886 5999999999 666 35566654331 2 222 2348999999999999999
Q ss_pred EEEecccc----------HHHHHHHHHHhCCCccCCCChHHHHhhh--hhHHHHHHHH-hhcCCccccCCchhh
Q 008345 367 FSFVTSED----------MAYLLDLHLFLSKPIRAAPSEEEVLLDM--DGVMSKIDQA-IANGETIYGRFPQTV 427 (569)
Q Consensus 367 i~~v~~~e----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~g~~~~~~ 427 (569)
++...++. ...|..-|+..++.+.++|....+.... ......+... ...+..++|++|.+.
T Consensus 533 ~iq~~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i~~~~~~~~~~~~~~~~~~~~~vlGPvp~~~ 606 (665)
T PRK14873 533 VVVAESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAVDGRPAAVAALLEAAGLPDGAEVLGPVPLPP 606 (665)
T ss_pred EEEeCCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEEEEcHHHHHHHHHHhcCCCCCEEECCcCCcc
Confidence 88765542 3345555666667777777443221110 1111111111 134567999998763
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.3e-19 Score=200.23 Aligned_cols=317 Identities=21% Similarity=0.272 Sum_probs=221.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|--.-=.+..| -|+...||+|||+++.+|++-... .|..+.|++|+--||.|-++++..+..+.
T Consensus 79 lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4644 888887654444444 689999999999999999986544 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCCCC-------CCCeeEEEEeCCCccCCC---------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMS-------LKSVEYVVFDEADCLFGM--------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~~~-------l~~l~~iViDEah~l~~~--------- 183 (569)
|++++++.++.+..+....+. +||++||..-| +|+|.. .+. ...+.++|+||+|.++=.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD--~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRD--NMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhc--cceechhhhcccccceeEechhhheeccccCCceeec
Confidence 999999988877666554443 99999999887 555554 233 378899999999987610
Q ss_pred -------ChHHHHHHHHHhcCC--------------------CC------------------------------------
Q 008345 184 -------GFAEQLHKILGQLSE--------------------NR------------------------------------ 200 (569)
Q Consensus 184 -------~f~~~l~~i~~~~~~--------------------~~------------------------------------ 200 (569)
.....+..++..+.. .+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 122222222222210 00
Q ss_pred -------------------------------------------------------------------------------c
Q 008345 201 -------------------------------------------------------------------------------Q 201 (569)
Q Consensus 201 -------------------------------------------------------------------------------q 201 (569)
.
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 1
Q ss_pred EEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHH
Q 008345 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (569)
Q Consensus 202 ~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~ 281 (569)
+-+||+|...+..+|...|-- ..+.++...+....-....++....+|+.++...+......+.|+||-+.|....+.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l--~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGL--DVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCC--CEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 223333332222222222211 111111111110000111234456789999999999888899999999999999999
Q ss_pred HHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-ceEEEEeccccccCCCCC--------------------------
Q 008345 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL-------------------------- 334 (569)
Q Consensus 282 l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip~-------------------------- 334 (569)
++.+|...|++..+++.... +++..+-. +.|+ -.|.|||++|.||.||.-
T Consensus 465 ls~~L~~~gi~h~VLNAk~~--~~EA~IIa-~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYH--EKEAEIIA-QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccc--hhHHHHHH-cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999999888887644 33322222 3554 469999999999999951
Q ss_pred -----------CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 335 -----------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 335 -----------v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
=-+||-...+.|.+.=.|-.||+||.|.+|.+-.|++-+|
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 2368888889999999999999999999999999988654
No 119
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=7.3e-20 Score=173.55 Aligned_cols=187 Identities=40% Similarity=0.593 Sum_probs=153.6
Q ss_pred HCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 40 RKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
..++..|+|+|.++++.+... +.+++.++||||||.++..++++.+.... ..+++|++|++.++.|+.+.+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 457788999999999999998 99999999999999999999988876542 45799999999999999998888765
Q ss_pred cCCCeEEEEEcCCCHHHHHHHHcCCC-CEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 119 YTDLRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~-~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
..........++......+..+..+. +++++|++.+.+.+... ......++++|+||+|.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 54434555566665455555555555 99999999999988763 35677889999999999997678889999999888
Q ss_pred CCCcEEEEEecCChHHHHHHHhcCCCCeeeeec
Q 008345 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (569)
...+++++|||+++.....+..++.+...+...
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 889999999999999999888888765554433
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.85 E-value=9.4e-20 Score=196.40 Aligned_cols=295 Identities=20% Similarity=0.233 Sum_probs=197.1
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.|+++|..||..+.+ | +.+++++.||+|||.+++ .++.+|.+.. .-+++|+|+-++.|+.|.+..+..+...
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 589999999976553 4 348889999999998765 4555665542 3468999999999999999887776432
Q ss_pred -CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhc----CCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH
Q 008345 120 -TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (569)
Q Consensus 120 -~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~----~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~ 194 (569)
..+....-..+. ..+.|.|+|..++...+... ..+....+++||+||||| |.......|+.
T Consensus 242 ~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~d 307 (875)
T COG4096 242 GTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILD 307 (875)
T ss_pred ccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHH
Confidence 122222222221 24789999999998777552 234566699999999999 66666678888
Q ss_pred hcCCCCcEEEEEecCChHHHHHHH-------------------hcCCCCeeeeeccccc----cCCCc------------
Q 008345 195 QLSENRQTLLFSATLPSALAEFAK-------------------AGLRDPHLVRLDVDTK----ISPDL------------ 239 (569)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~~~~-------------------~~l~~~~~i~~~~~~~----~~~~~------------ 239 (569)
.+..-.|.+ +|||...+..--- .++-.|..++++.+.. .....
T Consensus 308 YFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 776544433 9998553221111 1223333333322111 00000
Q ss_pred -e-EEEEEcc------hhhHHHHHHHHHHHhcCC------CCcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCC
Q 008345 240 -K-LAFFTLR------QEEKHAALLYMIREHISS------DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDM 300 (569)
Q Consensus 240 -~-~~~~~~~------~~~k~~~L~~ll~~~~~~------~~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l 300 (569)
. +.|-... -......+...+.+.+.. -++|||||.+..|++++...|... +--+..|.|+-
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 0 0010000 011334444555544443 468999999999999999999864 23366778876
Q ss_pred CHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC
Q 008345 301 DQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 301 ~~~~R~~~l~~F~~--g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
.+.++. ++.|.. .-.+|.|+.|++..|+|+|.|.+++.+....|...|.|++||+-|.
T Consensus 466 ~~~q~~--Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 466 EQAQAL--IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhHHH--HHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 666544 566655 3457888999999999999999999999999999999999999995
No 121
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.84 E-value=4.8e-19 Score=181.78 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=131.1
Q ss_pred CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhh
Q 008345 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH 278 (569)
Q Consensus 199 ~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~ 278 (569)
..|+++.||||.+. ++.... ++...-.+.+..-..|. ...-+.....+.|+.-++.....+++++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~--E~e~s~-~~vveQiIRPTGLlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDY--ELEQSG-GNVVEQIIRPTGLLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChH--HHHhcc-CceeEEeecCCCCCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 36999999998653 222221 11111111222211222 222234557788999998888889999999999999
Q ss_pred HHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcC-----CCCChhHHHHH
Q 008345 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD-----FPPKPKIFVHR 353 (569)
Q Consensus 279 ~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d-----~p~s~~~~~qr 353 (569)
++.+.++|.+.|+++.++|++.+.-+|.+++...|.|..+|||+-+.+-+|+|+|.|.+|..+| +..|....+|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998777 56788999999
Q ss_pred hhccccCCCccEEEEEecc
Q 008345 354 VGRAARAGRTGTAFSFVTS 372 (569)
Q Consensus 354 vGR~gR~g~~G~~i~~v~~ 372 (569)
+||++|- -.|.++.+...
T Consensus 539 IGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHhhc-cCCeEEEEchh
Confidence 9999996 45999887754
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.5e-19 Score=190.19 Aligned_cols=302 Identities=21% Similarity=0.290 Sum_probs=199.2
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC---CCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeEEE-
Q 008345 52 KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ---GGVRALILSPTRDLALQTLK-FTKELGRYTDLRISL- 126 (569)
Q Consensus 52 ~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~---~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~~- 126 (569)
+++..|..+.-+|++|.||||||. .+|.+-.-...... .+--+-|--|.|.-|.-+.+ +..+++. .+-.++.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 455556566668999999999998 66665443222111 12235566799988888776 4455654 3333333
Q ss_pred -EEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-CC----ChHHHHHHHHHhcCC--
Q 008345 127 -LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GM----GFAEQLHKILGQLSE-- 198 (569)
Q Consensus 127 -~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-~~----~f~~~l~~i~~~~~~-- 198 (569)
-+.|. ......|.++|.|-|++-+.. ++.|..++.||+||||.-. .. |...++..+......
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333 234578999999999999985 6889999999999999643 21 344555555544443
Q ss_pred ----CCcEEEEEecCChHHHHHHH---hcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHH---HHHHhcCCCCc
Q 008345 199 ----NRQTLLFSATLPSALAEFAK---AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY---MIREHISSDQQ 268 (569)
Q Consensus 199 ----~~q~ll~SAT~~~~~~~~~~---~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~---ll~~~~~~~~~ 268 (569)
.-.+|+||||+- +.+|.. .+-.-|.++.++.... .+.++|..-.+.+-....++ .|.+.+ +.+.
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf---PVsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF---PVSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGG 483 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC---ceEEEeccCCCchHHHHHHHHHHHHhhcC-CCCc
Confidence 457899999973 334441 1223455666665432 23344433333332322222 122222 4678
Q ss_pred EEEEEcChhhHHHHHHHHHHCC----------------------------------------------------------
Q 008345 269 TLIFVSTKHHVEFLNVLFREEG---------------------------------------------------------- 290 (569)
Q Consensus 269 ~IIF~~t~~~~~~l~~~L~~~~---------------------------------------------------------- 290 (569)
+|||+...++++++.+.|++..
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999887520
Q ss_pred -----------------------------------------CCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 008345 291 -----------------------------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (569)
Q Consensus 291 -----------------------------------------~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arG 329 (569)
+-+..+|+-++..+..++++.--.|..-++|+|+||...
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 003456667777777777777777888899999999999
Q ss_pred CCCCCCCEEEEcCCC--------CC----------hhHHHHHhhccccCCCccEEEEEeccc
Q 008345 330 IDIPLLDNVINWDFP--------PK----------PKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 330 lDip~v~~VI~~d~p--------~s----------~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
+.||++.+||..+.- .. -..--||+||+||.| +|.||-+++..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999965532 22 223479999999986 59999999863
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.83 E-value=2.7e-18 Score=195.34 Aligned_cols=319 Identities=18% Similarity=0.246 Sum_probs=202.2
Q ss_pred HHHCCCCCChHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH-HH
Q 008345 38 IKRKGYKVPTPIQRKTMPLI----LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL-KF 112 (569)
Q Consensus 38 l~~~g~~~~t~iQ~~~i~~i----l~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~-~~ 112 (569)
+...||+ ++|-|.+-...+ ..+..+++.|+||+|||++|++|++... .+.+++|++||++|+.|+. +.
T Consensus 239 ~~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 239 IALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred hccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHH
Confidence 3345776 999999844443 3468899999999999999999988753 2568999999999999994 67
Q ss_pred HHHhcccCCCeEEEEEcCCCHHH-----------------------------------------------HHHH------
Q 008345 113 TKELGRYTDLRISLLVGGDSMES-----------------------------------------------QFEE------ 139 (569)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~-----------------------------------------------~~~~------ 139 (569)
+..+++..++++..+.|+.++-- .|..
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 88888878888887777643210 0010
Q ss_pred ------------------HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-----h-------HH--
Q 008345 140 ------------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----F-------AE-- 187 (569)
Q Consensus 140 ------------------l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-----f-------~~-- 187 (569)
-...+||||+.-.-|+..+...+ .+...+++||||||++.+.. . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 01246899999887777664422 35678999999999875210 0 00
Q ss_pred --------------------------------------------HH---------------HHHHHh------c------
Q 008345 188 --------------------------------------------QL---------------HKILGQ------L------ 196 (569)
Q Consensus 188 --------------------------------------------~l---------------~~i~~~------~------ 196 (569)
.+ ..++.. +
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00 000000 0
Q ss_pred ---------------------CCCCcEEEEEecCC--hHHHHHHH-hcCCCCeeeeeccccccCCCceEEEEE--cc---
Q 008345 197 ---------------------SENRQTLLFSATLP--SALAEFAK-AGLRDPHLVRLDVDTKISPDLKLAFFT--LR--- 247 (569)
Q Consensus 197 ---------------------~~~~q~ll~SAT~~--~~~~~~~~-~~l~~~~~i~~~~~~~~~~~~~~~~~~--~~--- 247 (569)
+....++++|||++ +... +.+ .++.......+.. ... .-...++. ++
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~~--~~~-~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIEK--DKK-QDQLVVVDQDMPLVT 625 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCCC--ChH-HccEEEeCCCCCCCC
Confidence 11135789999995 3322 433 3333332222211 000 11111111 11
Q ss_pred ---hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 248 ---QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 248 ---~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
.+.-...+...+......+++++|+++|.+..+.++..|....+.. ...|... .+..++++|++++..||++|+
T Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 1233345555555444567899999999999999999987654443 4444221 245678999999899999999
Q ss_pred cccccCCCCC--CCEEEEcCCCCC-h-----------------------------hHHHHHhhccccCCCc-cEEEEEec
Q 008345 325 VAARGIDIPL--LDNVINWDFPPK-P-----------------------------KIFVHRVGRAARAGRT-GTAFSFVT 371 (569)
Q Consensus 325 v~arGlDip~--v~~VI~~d~p~s-~-----------------------------~~~~qrvGR~gR~g~~-G~~i~~v~ 371 (569)
..++|+|+|. ...||...+|.. | ..+.|.+||.-|...+ |. +++++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD 781 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILD 781 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEEC
Confidence 9999999984 455666666632 1 1258999999997653 53 44555
Q ss_pred cc
Q 008345 372 SE 373 (569)
Q Consensus 372 ~~ 373 (569)
+.
T Consensus 782 ~R 783 (820)
T PRK07246 782 RR 783 (820)
T ss_pred Cc
Confidence 43
No 124
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.83 E-value=3e-18 Score=190.20 Aligned_cols=317 Identities=19% Similarity=0.172 Sum_probs=219.7
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHhcccCCCeE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRI 124 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~-~~~~~~~~l~~ 124 (569)
.+..+...+..+.+++-+++.|.||+|||.-.---+++...... ...++++--|.|--|.-+++.+ .+-+...|-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 57778888899999999999999999999844333444433332 4566777789998888877643 44455555555
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc-cCCCChHHHHHHHHHhcCCCCcEE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~-l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
+.-++..+.. .....+.+||.|-|++.+.. ...+..+..||+||+|. -.+.+|.--+...+-...+.-+++
T Consensus 252 GYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 252 GYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 5555544322 23477999999999999986 56688999999999995 345666666666555566788999
Q ss_pred EEEecCChHHHHHHHhcCCCCeeeeeccccccC----------------CCceEE------------EEEcchhhHHHHH
Q 008345 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS----------------PDLKLA------------FFTLRQEEKHAAL 255 (569)
Q Consensus 204 l~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~----------------~~~~~~------------~~~~~~~~k~~~L 255 (569)
|||||+.. +....+++....+.+....... ...... ......+.....+
T Consensus 324 LMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 324 LMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred Eeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999873 3444455555555543221100 000000 0000111122222
Q ss_pred HHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHC-------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 256 LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 256 ~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
..++.... ...+.+|||.+....+..+.+.|... .+.+..+|+.|+..+...++...-.|..+|+++|.+|
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 23332211 34578999999999999999998642 2456789999999999999888888999999999999
Q ss_pred cccCCCCCCCEEEEcC--------CCC----------ChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 327 ARGIDIPLLDNVINWD--------FPP----------KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 327 arGlDip~v~~VI~~d--------~p~----------s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
+.+|.||++.+||+.+ .-. +-..-.||.||+||. ++|.||.+++...+.
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 9999999999999544 322 233459999999997 789999999986543
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.3e-17 Score=182.56 Aligned_cols=319 Identities=19% Similarity=0.210 Sum_probs=223.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |++.|--.-=.+..| -|+...||-|||++..+|++-... .|..|-|++..--||.-=.+++..+-.+.
T Consensus 75 lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4765 899998776555556 489999999999999999865433 36778999999999998888888888899
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcC-----CCCCCCeeEEEEeCCCccCC------------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFG------------ 182 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~-----~~~l~~l~~iViDEah~l~~------------ 182 (569)
|+.++++..+...++..... .+||.+||...| +++|..+- ..-...+.+.|+||+|.++=
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 99999998877666544443 599999999876 55665421 12246678999999997651
Q ss_pred ----CChHHHHHHHHHhcCCC-------C---------------------------------------------------
Q 008345 183 ----MGFAEQLHKILGQLSEN-------R--------------------------------------------------- 200 (569)
Q Consensus 183 ----~~f~~~l~~i~~~~~~~-------~--------------------------------------------------- 200 (569)
..+...+..++..+... .
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 01233333333333210 1
Q ss_pred ----------------------------------------------------------cEEEEEecCChHHHHHHHhcCC
Q 008345 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (569)
Q Consensus 201 ----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l~ 222 (569)
++-+||+|...+-.+|...+-
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~- 383 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN- 383 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC-
Confidence 123444443333333333221
Q ss_pred CCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCH
Q 008345 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (569)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~ 302 (569)
...+.++...+....-....++.....|..++...+.....++.|+||.|.|....+.++..|...|++...++.. +
T Consensus 384 -l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk--~ 460 (925)
T PRK12903 384 -MRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--Q 460 (925)
T ss_pred -CCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc--c
Confidence 1122222111100000011234456788999999998888889999999999999999999999999999999876 3
Q ss_pred HHHHHHHHHHhcCC-ceEEEEeccccccCCCCCCC--------EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 303 DARKIHVSRFRARK-TMFLIVTDVAARGIDIPLLD--------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 303 ~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip~v~--------~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
.+++..+-. ..|+ -.|.|||++|+||.||.--. +||....|.|.+.--|..||+||.|.+|.+-.|++-+
T Consensus 461 ~e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 461 NAREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred hhhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 344433322 4564 46999999999999997433 8999999999999999999999999999998888865
Q ss_pred c
Q 008345 374 D 374 (569)
Q Consensus 374 e 374 (569)
|
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 4
No 126
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.81 E-value=4.9e-18 Score=180.27 Aligned_cols=320 Identities=21% Similarity=0.290 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.++|||.+.++.+.+ |-++|+....|-|||+-- |.++..+......+|+ .||++|-.-|.. |.+.+++|+ .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GP-fLVi~P~StL~N-W~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGP-FLVIAPKSTLDN-WMNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCC-eEEEeeHhhHHH-HHHHHHHhC--C
Confidence 589999999987654 678999999999999743 3444445443333565 799999888754 455566665 5
Q ss_pred CCeEEEEEcCCCHHHHH--HHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 121 DLRISLLVGGDSMESQF--EEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~--~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
++.+.+++|........ ..+ ....+|+|+|++..+.--.- +.--++.|+|||||||+-+.. ..+..+++.+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRIKNEK--SKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhhcchh--hHHHHHHHHhc
Confidence 78899999876433222 122 24789999999988754322 334468999999999998864 56677888776
Q ss_pred CCCcEEEEEecCC-hHHHHHH------------------HhcCC-----------------CCeeee---eccccccCCC
Q 008345 198 ENRQTLLFSATLP-SALAEFA------------------KAGLR-----------------DPHLVR---LDVDTKISPD 238 (569)
Q Consensus 198 ~~~q~ll~SAT~~-~~~~~~~------------------~~~l~-----------------~~~~i~---~~~~~~~~~~ 238 (569)
... .+|+|+||- +++.++. ..+-. .|.+.+ .+.+...++.
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 544 478888861 1111111 00000 000000 0011111111
Q ss_pred ceEEEE----------------------------------------------------------------EcchhhHHHH
Q 008345 239 LKLAFF----------------------------------------------------------------TLRQEEKHAA 254 (569)
Q Consensus 239 ~~~~~~----------------------------------------------------------------~~~~~~k~~~ 254 (569)
-....+ .+....|...
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 111110 0111224555
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC---ceEEEEeccccccCC
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGID 331 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~---~~ILV~Tdv~arGlD 331 (569)
|-.+|......+.++|||..-....+-+..++.-.++....+.|.++.++|...++.|.... .-.|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 55666666678999999999888888899999999999999999999999999999998754 345889999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHHhhccccCCCcc--EEEEEeccccH
Q 008345 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (569)
Q Consensus 332 ip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G--~~i~~v~~~e~ 375 (569)
+...|.||.||.-++|..=+|..-|+.|.|+.. .+|-+++.+-+
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 999999999999999999999999999999874 56777887644
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=2.7e-19 Score=181.49 Aligned_cols=318 Identities=17% Similarity=0.199 Sum_probs=218.0
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g---~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+++|+|.+++..+..+ +..|+.-|+|+|||++-+-++. . -.+++||||.+-.-+.||..+++.++...+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-t-------ikK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-T-------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-e-------ecccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 6899999999987753 6799999999999987552221 1 246799999999999999999998876666
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh-------cCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~-------~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~ 194 (569)
-.++.++..... ....++.|+|+|+..+.+.-.+ |..+.-..++++++||+|-+...-|...+.-+..
T Consensus 374 ~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a 448 (776)
T KOG1123|consen 374 DQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA 448 (776)
T ss_pred cceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH
Confidence 667766654421 1346889999999766321111 1112345689999999999887767666666655
Q ss_pred hcCCCCcEEEEEecCChHHHHHHH-hcCCCCeeeeeccc-----c----------------------ccCCCceEEEEEc
Q 008345 195 QLSENRQTLLFSATLPSALAEFAK-AGLRDPHLVRLDVD-----T----------------------KISPDLKLAFFTL 246 (569)
Q Consensus 195 ~~~~~~q~ll~SAT~~~~~~~~~~-~~l~~~~~i~~~~~-----~----------------------~~~~~~~~~~~~~ 246 (569)
++. ++++||+-.+-..+.. .++-.|.++..+-- . -....-......+
T Consensus 449 HcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 449 HCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred Hhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 543 8899998433211111 11222222221100 0 0001112223334
Q ss_pred chhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc-CCceEEEEecc
Q 008345 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDV 325 (569)
Q Consensus 247 ~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv 325 (569)
....|+.+.-.+|+.+-..+.++|||..+.-.....+-.|. --+|||..+|.+|..+++.|+- ..++.++.+.|
T Consensus 524 MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 45567777777787776789999999987666555555443 3479999999999999999985 56888999999
Q ss_pred ccccCCCCCCCEEEEcCCC-CChhHHHHHhhccccCCCc------cEEEEEeccc--cHHHHHHHHHHh
Q 008345 326 AARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRT------GTAFSFVTSE--DMAYLLDLHLFL 385 (569)
Q Consensus 326 ~arGlDip~v~~VI~~d~p-~s~~~~~qrvGR~gR~g~~------G~~i~~v~~~--e~~~~~~l~~~l 385 (569)
+...+|+|..+++|+...- .|-..=-||.||.-|+.+. ...|++|+.+ |+.|-..-+.||
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhh
Confidence 9999999999999987654 3566779999999998542 3458888875 454544444454
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.79 E-value=1.7e-17 Score=182.79 Aligned_cols=279 Identities=20% Similarity=0.204 Sum_probs=187.9
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |++.|--+.=.+ .+.-|+...||.|||+++.+|++-... .|..|-|++++..||.+-++++..+-++.
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL-----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNAL-----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHh-----cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 5776 888887765443 455799999999999999999964333 36779999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccCCC-----------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM----------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~~~----------- 183 (569)
|+.++++.++.+.++.... -.+||+.+|...+ +++|..+ ...-...+.+.|+||+|.++=.
T Consensus 145 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 9999999888877665444 3589999999765 3444431 1112456889999999976510
Q ss_pred -----ChHHHHHHHHHhcCCC---------C-------------------------------------------------
Q 008345 184 -----GFAEQLHKILGQLSEN---------R------------------------------------------------- 200 (569)
Q Consensus 184 -----~f~~~l~~i~~~~~~~---------~------------------------------------------------- 200 (569)
........+...+... +
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0112222222222110 0
Q ss_pred ----------------------------------------------------------cEEEEEecCChHHHHHHHhcCC
Q 008345 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (569)
Q Consensus 201 ----------------------------------------------------------q~ll~SAT~~~~~~~~~~~~l~ 222 (569)
.+.+||+|...+-.+|...+-
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~- 381 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYN- 381 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhC-
Confidence 234555555444334433332
Q ss_pred CCeeeeeccccccCCCce-EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 223 DPHLVRLDVDTKISPDLK-LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~-~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
...+.++...+. .... ...+.....+|..++...+.+....+.|+||-+.|....+.++.+|...|++..+++..-.
T Consensus 382 -l~vv~IPtnkp~-~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~ 459 (870)
T CHL00122 382 -LEVVCIPTHRPM-LRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPE 459 (870)
T ss_pred -CCEEECCCCCCc-cceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCc
Confidence 222222222111 1111 1233445567888999988888889999999999999999999999999999999998643
Q ss_pred HHHHHHHHHHHhcCC-ceEEEEeccccccCCCC
Q 008345 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIP 333 (569)
Q Consensus 302 ~~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip 333 (569)
+.+++..+-. +.|+ -.|.|||++|+||.||.
T Consensus 460 ~~~~EA~IIA-~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 460 NVRRESEIVA-QAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred cchhHHHHHH-hcCCCCcEEEeccccCCCcCee
Confidence 3333322222 2454 46899999999999985
No 129
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=1.9e-15 Score=166.48 Aligned_cols=280 Identities=19% Similarity=0.214 Sum_probs=185.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|.. |+++|--.-=.+..| -|+...||.|||+++.+|++-... .|..|-|++++.-||..-.+++..+-++.
T Consensus 82 lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL-----~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNAL-----TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhh-----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 4655 888887665444444 699999999999999999876544 36779999999999999999999998999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhh-----cCCCCCCCeeEEEEeCCCccCC-C----------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSE-----VEDMSLKSVEYVVFDEADCLFG-M---------- 183 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~-----~~~~~l~~l~~iViDEah~l~~-~---------- 183 (569)
|+.++++.++.+.++.. ..-.+||++||++.| +|+|.. ........+.+.|+||+|.++= .
T Consensus 154 GLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 99999998877655443 334799999999987 333332 1123356788999999998751 0
Q ss_pred -----ChHHHHHHHHHhcCC--------------CCc-------------------------------------------
Q 008345 184 -----GFAEQLHKILGQLSE--------------NRQ------------------------------------------- 201 (569)
Q Consensus 184 -----~f~~~l~~i~~~~~~--------------~~q------------------------------------------- 201 (569)
........+...+.. ..+
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 122222222222211 111
Q ss_pred -----------------------------------------------------------------EEEEEecCChHHHHH
Q 008345 202 -----------------------------------------------------------------TLLFSATLPSALAEF 216 (569)
Q Consensus 202 -----------------------------------------------------------------~ll~SAT~~~~~~~~ 216 (569)
+.+||+|...+-.+|
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 233333433222233
Q ss_pred HHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceee
Q 008345 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (569)
Q Consensus 217 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i 296 (569)
...+-- ..+.++...+....-....++.....|..++...+.+....+.|+||-+.|....+.++..|...|+++..+
T Consensus 392 ~~iY~l--~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 392 EKTYKL--EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHhCC--cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 322211 111221111100000111233445789999999998888899999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCC
Q 008345 297 YGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIP 333 (569)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~g~~-~ILV~Tdv~arGlDip 333 (569)
+..-.+.+++..+-. ..|+. .|.|||++|+||-||.
T Consensus 470 NAk~~~~~~EA~IIa-~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVA-QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHH-hcCCCCcEEEeccCCCCCcCEe
Confidence 986333333322221 25543 6899999999999986
No 130
>COG4889 Predicted helicase [General function prediction only]
Probab=99.76 E-value=7.7e-19 Score=187.69 Aligned_cols=307 Identities=22% Similarity=0.280 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 44 KVPTPIQRKTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g-----~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
..|+|+|+.|+....+| +.-++|| +|+|||...+ ++.+.. ...++|+|+|++.|..|+.+....- +
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsL-----kisEal--a~~~iL~LvPSIsLLsQTlrew~~~-~ 230 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSL-----KISEAL--AAARILFLVPSISLLSQTLREWTAQ-K 230 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHH-----HHHHHH--hhhheEeecchHHHHHHHHHHHhhc-c
Confidence 46999999999998875 3355555 8999999877 333322 1267999999999999977644322 1
Q ss_pred cCCCeEEEEEcCCCH--------------------HHHHHH-----HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEE
Q 008345 119 YTDLRISLLVGGDSM--------------------ESQFEE-----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (569)
Q Consensus 119 ~~~l~~~~~~gg~~~--------------------~~~~~~-----l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iV 173 (569)
...++...+...... +..... ...+--||++|+..+...-.- ....+..+++||
T Consensus 231 ~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~~fDlii 309 (1518)
T COG4889 231 ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLDEFDLII 309 (1518)
T ss_pred CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCCCccEEE
Confidence 234444444333211 111111 123566999999998766554 456788999999
Q ss_pred EeCCCccCCCChHHHHHHHHHhcCC-----CCcEEEEEecCC---hHHHHHHHh-----------cCCCCeeeeeccccc
Q 008345 174 FDEADCLFGMGFAEQLHKILGQLSE-----NRQTLLFSATLP---SALAEFAKA-----------GLRDPHLVRLDVDTK 234 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~~~-----~~q~ll~SAT~~---~~~~~~~~~-----------~l~~~~~i~~~~~~~ 234 (569)
.|||||.....+...-..-+.++.. ..+.+.++|||. .+...-++. ....|.+.++.....
T Consensus 310 cDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeA 389 (1518)
T COG4889 310 CDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEA 389 (1518)
T ss_pred ecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHH
Confidence 9999997643322222222222221 234578889861 111111110 000111122211111
Q ss_pred ----cCCCceEEEEEcchhh----------------HHHHH------HH-HHHHhc------------CCCCcEEEEEcC
Q 008345 235 ----ISPDLKLAFFTLRQEE----------------KHAAL------LY-MIREHI------------SSDQQTLIFVST 275 (569)
Q Consensus 235 ----~~~~~~~~~~~~~~~~----------------k~~~L------~~-ll~~~~------------~~~~~~IIF~~t 275 (569)
...+....+..+.... ..+.. .. +.++.. .+.++.|-||.+
T Consensus 390 v~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~ 469 (1518)
T COG4889 390 VERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKD 469 (1518)
T ss_pred HHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHh
Confidence 1111222222222111 11111 11 111111 012356778887
Q ss_pred hhhHHHHHHHHHH-------------CCC--CceeecCCCCHHHHHHHHH---HHhcCCceEEEEeccccccCCCCCCCE
Q 008345 276 KHHVEFLNVLFRE-------------EGL--EPSVCYGDMDQDARKIHVS---RFRARKTMFLIVTDVAARGIDIPLLDN 337 (569)
Q Consensus 276 ~~~~~~l~~~L~~-------------~~~--~~~~i~g~l~~~~R~~~l~---~F~~g~~~ILV~Tdv~arGlDip~v~~ 337 (569)
.+....+++.|.. .++ .+..+.|.|...+|...+. .|...+++||--...+++|+|+|.++-
T Consensus 470 I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDs 549 (1518)
T COG4889 470 IKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDS 549 (1518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccce
Confidence 7666655554432 233 3455669999988855443 345678999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhhccccC
Q 008345 338 VINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 338 VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
||.+++..+.-+.+|.+||++|-
T Consensus 550 ViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 550 VIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred EEEecCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999994
No 131
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=2.3e-17 Score=146.33 Aligned_cols=122 Identities=39% Similarity=0.664 Sum_probs=113.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 248 ~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
++.|...+...+.+....++++||||++..+++.+...|...+..+..+||+++...|..+++.|.++...||++|++++
T Consensus 10 ~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~ 89 (131)
T cd00079 10 EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIA 89 (131)
T ss_pred CHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhh
Confidence 34788888888887765688999999999999999999999889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEE
Q 008345 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (569)
Q Consensus 328 rGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~ 369 (569)
+|+|+|.+++||.++.|++...|.|++||++|.|+.|.++.+
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998887653
No 132
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=173.65 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=113.5
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhcccCCCeE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRI 124 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~~l~~ 124 (569)
|-.+|++.+..+-.+..+++.|||.+|||.+-...+ ++..... ...-+++++||.+|+.|+... ..+|...+-.+.
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 889999999999899999999999999998644333 3333322 234589999999999998764 444533333344
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhc--CCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~--~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ 202 (569)
..+.|.-+.+.+. -.-+|.|+|+-|+.+-.++... .......+.+||+||+|.+..+.-.--+.+++... .|++
T Consensus 589 ~sl~g~ltqEYsi--np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~ 664 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSI--NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPF 664 (1330)
T ss_pred hhhHhhhhHHhcC--CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCe
Confidence 4444443333222 1237999999999988877652 12336789999999999988654333444444444 4889
Q ss_pred EEEEecCChH--HHHHHH
Q 008345 203 LLFSATLPSA--LAEFAK 218 (569)
Q Consensus 203 ll~SAT~~~~--~~~~~~ 218 (569)
+.+|||+.+. ...|.+
T Consensus 665 L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 665 LVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eEEecccCCHHHHHHHHH
Confidence 9999998543 334444
No 133
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=3.6e-16 Score=167.06 Aligned_cols=318 Identities=20% Similarity=0.271 Sum_probs=213.1
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.+.|+|+.++..+.+ +...|+-...|-|||.-.+ ..+..|. ++..--.++|||||.- +..||.+.+..+. .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~-~S~k~~~paLIVCP~T-ii~qW~~E~~~w~--p 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALH-HSGKLTKPALIVCPAT-IIHQWMKEFQTWW--P 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHh-hcccccCceEEEccHH-HHHHHHHHHHHhC--c
Confidence 479999999987754 4568999999999996321 1122222 1111124599999974 4567777777664 4
Q ss_pred CCeEEEEEcCCCH--------HHHHHH-----HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHH
Q 008345 121 DLRISLLVGGDSM--------ESQFEE-----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (569)
Q Consensus 121 ~l~~~~~~gg~~~--------~~~~~~-----l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~ 187 (569)
.+++..++|..+. ...+.. ...+..|+|+|++.+.-. . ..+.-..++|+|+||.|++-+.. .
T Consensus 280 ~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-~--d~l~~~~W~y~ILDEGH~IrNpn--s 354 (923)
T KOG0387|consen 280 PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-G--DDLLGILWDYVILDEGHRIRNPN--S 354 (923)
T ss_pred ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc-C--cccccccccEEEecCcccccCCc--c
Confidence 5788888876652 111111 112566999998866422 1 22444568999999999998765 4
Q ss_pred HHHHHHHhcCCCCcEEEEEecC-ChHHHHHHHhc-----------------CCCCeee----------------------
Q 008345 188 QLHKILGQLSENRQTLLFSATL-PSALAEFAKAG-----------------LRDPHLV---------------------- 227 (569)
Q Consensus 188 ~l~~i~~~~~~~~q~ll~SAT~-~~~~~~~~~~~-----------------l~~~~~i---------------------- 227 (569)
++...+..++. .+.+.+|+|| -+.+.++.+.+ +..|..+
T Consensus 355 ~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr 433 (923)
T KOG0387|consen 355 KISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALR 433 (923)
T ss_pred HHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHH
Confidence 55555666654 3445566665 22222222100 0000000
Q ss_pred --------e-e--ccccccCCCceEEE-----------------------------------------------------
Q 008345 228 --------R-L--DVDTKISPDLKLAF----------------------------------------------------- 243 (569)
Q Consensus 228 --------~-~--~~~~~~~~~~~~~~----------------------------------------------------- 243 (569)
+ + +......+.-...+
T Consensus 434 ~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~ 513 (923)
T KOG0387|consen 434 DLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD 513 (923)
T ss_pred HHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcc
Confidence 0 0 00000000000000
Q ss_pred ----------EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHH-HCCCCceeecCCCCHHHHHHHHHHH
Q 008345 244 ----------FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (569)
Q Consensus 244 ----------~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~-~~~~~~~~i~g~l~~~~R~~~l~~F 312 (569)
-.+....|...+..++......+.++|+|..|+...+.+...|. ..++....+.|..+...|...+++|
T Consensus 514 ~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~F 593 (923)
T KOG0387|consen 514 EDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRF 593 (923)
T ss_pred cccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhh
Confidence 01112337778888888888889999999999999999999998 5899999999999999999999999
Q ss_pred hcCCc-e-EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCcc--EEEEEeccc
Q 008345 313 RARKT-M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSE 373 (569)
Q Consensus 313 ~~g~~-~-ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G--~~i~~v~~~ 373 (569)
.+++. . .|++|.|..-|+|+...+-||.||+-++|.+=.|..-|+-|.|++- .+|-+++..
T Consensus 594 ne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 594 NEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred cCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 98764 3 4789999999999999999999999999999999999999999874 446677764
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=2.2e-15 Score=174.56 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHhc-CCCCcEEEEEcChhhHHHHHHHHHHCCCC--ceeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 008345 253 AALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE--PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (569)
Q Consensus 253 ~~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~~--~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arG 329 (569)
..+...|.+.. ..++++|||++|....+.++..|...... ...+.-+++...|..+++.|++++-.||++|+..++|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 45555554443 24679999999999999999998754321 1222223444567889999999988999999999999
Q ss_pred CCCCC--CCEEEEcCCCCC-hh-----------------------------HHHHHhhccccCCCccEEEEEeccc
Q 008345 330 IDIPL--LDNVINWDFPPK-PK-----------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 330 lDip~--v~~VI~~d~p~s-~~-----------------------------~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
+|+|+ +.+||...+|.. |. .+.|.+||.-|...+--+++++++.
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 99997 577887777642 21 1488999999987643245555543
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=6.5e-15 Score=160.99 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC----CceEEEEeccccccCCC--------
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR----KTMFLIVTDVAARGIDI-------- 332 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g----~~~ILV~Tdv~arGlDi-------- 332 (569)
.++.++|.+.|.+..+.+++.|...---...+.|..+ .+...+++|+.. ...||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999764323455556432 345578888874 78999999999999999
Q ss_pred C--CCCEEEEcCCCC
Q 008345 333 P--LLDNVINWDFPP 345 (569)
Q Consensus 333 p--~v~~VI~~d~p~ 345 (569)
| .+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3 388899888774
No 136
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=4.5e-16 Score=138.83 Aligned_cols=144 Identities=42% Similarity=0.605 Sum_probs=115.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+.+++.++||+|||.+++.++.+....+ ...+++|++|++.++.|+.+.+...... +..+..+.++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 4689999999999999998888776552 3567999999999999999888877655 68888888888777766666
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
..+.+|+++|++.+...+... ......++++|+||+|.+....+...............+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 788999999999998877653 23456789999999999987765544333445556788999999996
No 137
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.70 E-value=1e-14 Score=159.75 Aligned_cols=320 Identities=16% Similarity=0.185 Sum_probs=199.3
Q ss_pred CChHHHHHHHHHHhc---CC-------cEEEEcCCCchHHHHHHHHHHHHhhhcCC--CCCeEEEEEcCcHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILS---GA-------DVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~---g~-------dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
.++|+|++.+..+.. |. .+|+.-.+|+|||+..+.-++..|...+. ..-.++||++|. .|+.-|.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999987643 32 36777789999999877666666666521 001678999997 455666666
Q ss_pred HHHhcccCCCeEEEEEcCCCHHHHH---HHH-----cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC
Q 008345 113 TKELGRYTDLRISLLVGGDSMESQF---EEL-----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (569)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~~~---~~l-----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~ 184 (569)
+.++.....+....++|+.+. .|. ..+ .-...|.+-+++.+.++... +....++++|+||.|++-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD 392 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh
Confidence 665543345666667776653 111 011 11345788888888777765 557789999999999988754
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecC-ChHHHHHHHh-cCCCCeee-----------------------------------
Q 008345 185 FAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA-GLRDPHLV----------------------------------- 227 (569)
Q Consensus 185 f~~~l~~i~~~~~~~~q~ll~SAT~-~~~~~~~~~~-~l~~~~~i----------------------------------- 227 (569)
..+...+..+.. ++.|++|+|| -+.+.++... .+-+|.++
T Consensus 393 --s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 393 --SLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 445555666654 4458889997 2222222211 01111110
Q ss_pred ----------eec--cccccCCCceEEEEEcchhh---------------------------------------------
Q 008345 228 ----------RLD--VDTKISPDLKLAFFTLRQEE--------------------------------------------- 250 (569)
Q Consensus 228 ----------~~~--~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 250 (569)
+-. .-....|......+.+.+..
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000 00111122223333333221
Q ss_pred -----------------------------HHHHHHHHHHHhcCC-CCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCC
Q 008345 251 -----------------------------KHAALLYMIREHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (569)
Q Consensus 251 -----------------------------k~~~L~~ll~~~~~~-~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l 300 (569)
+...|..++.....+ ..++.+..|-+...+.+...++-.|+.+..+||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 111122221111000 11122222333334445555566799999999999
Q ss_pred CHHHHHHHHHHHhcCCc--eE-EEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEE--EEEecc
Q 008345 301 DQDARKIHVSRFRARKT--MF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTS 372 (569)
Q Consensus 301 ~~~~R~~~l~~F~~g~~--~I-LV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~ 372 (569)
+..+|..+++.|.+... .| |.+|-+.+.||++-+.+-||.||..++|..=.|.++|+-|.|++-.| |-|++.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 99999999999987432 34 66788899999999999999999999999999999999999998665 555654
No 138
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.69 E-value=1.6e-16 Score=176.32 Aligned_cols=316 Identities=21% Similarity=0.296 Sum_probs=216.0
Q ss_pred CCChHHHHHHHHHHhc----CCcEEEEcCCCchHHH---HHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 44 KVPTPIQRKTMPLILS----GADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~---a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.+++.+|-..++.++. +.++|+.-..|-|||. +|+-.++.... ..|+ .||++|..-++. |-++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~----~~gp-flvvvplst~~~----W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ----IHGP-FLVVVPLSTITA----WEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh----ccCC-eEEEeehhhhHH----HHHHH
Confidence 5799999999987654 6889999999999995 44444443332 2355 799999766554 34444
Q ss_pred cccCCCeEEEEEcCCCHHHHHHHH---cC------CCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHH
Q 008345 117 GRYTDLRISLLVGGDSMESQFEEL---AQ------NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (569)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~l---~~------~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~ 187 (569)
...+++.+++++|.....+..+.. .. .++++++|++.++.--.. +.--.+.++++||||++-+.. .
T Consensus 440 ~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~--~ 514 (1373)
T KOG0384|consen 440 ETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDE--S 514 (1373)
T ss_pred HHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchH--H
Confidence 444578999999987665544332 22 478999999988643322 333457899999999998643 4
Q ss_pred HHHHHHHhcCCCCcEEEEEecCC-hHHHHHHHhc-CCCCeeeee---------------------------------ccc
Q 008345 188 QLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-LRDPHLVRL---------------------------------DVD 232 (569)
Q Consensus 188 ~l~~i~~~~~~~~q~ll~SAT~~-~~~~~~~~~~-l~~~~~i~~---------------------------------~~~ 232 (569)
.+...+..+..+. .+|.|+||- +++.++.... +-.|..+.. +++
T Consensus 515 ~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 4455555555444 477788863 3333333110 011111000 111
Q ss_pred cccCCCceEEE-------------------------------------------------EEcchhhHH----------H
Q 008345 233 TKISPDLKLAF-------------------------------------------------FTLRQEEKH----------A 253 (569)
Q Consensus 233 ~~~~~~~~~~~-------------------------------------------------~~~~~~~k~----------~ 253 (569)
...++...... ..-..++++ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 11222111111 111111111 1
Q ss_pred HHHHH-------------HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC---Cc
Q 008345 254 ALLYM-------------IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR---KT 317 (569)
Q Consensus 254 ~L~~l-------------l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g---~~ 317 (569)
.|..+ |......++++|||..-.+..+-|+++|...+++...+.|++..+.|...++.|..- ..
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 22222 222334678999999999999999999999999999999999999999999999863 45
Q ss_pred eEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCcc--EEEEEecccc
Q 008345 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (569)
Q Consensus 318 ~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G--~~i~~v~~~e 374 (569)
-.|+||.+.+-|||+-..|.||.||.-++|..=+|...|+.|.|++- .+|-||+.+-
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 57999999999999999999999999999999999999999999974 5688998764
No 139
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.69 E-value=9e-17 Score=129.58 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.5
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCC
Q 008345 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (569)
Q Consensus 284 ~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g 361 (569)
+.|...++.+..+||++++.+|..+++.|++++..|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 140
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.64 E-value=3.9e-15 Score=153.62 Aligned_cols=279 Identities=18% Similarity=0.207 Sum_probs=178.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+-++-.|||.||||.-++ +++.. .+..++..|.|-||..+++.+... |+.+.+++|.+......+
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~-----aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS-----AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh-----hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--
Confidence 336679999999998654 45443 356899999999999999888776 488888888764332211
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC-CCCcEEEEEecCChHHHHHHHh
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKA 219 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~ 219 (569)
...+..+-||-+..- . -..+++.||||.+.|.+..-...+.+.+--+. ....+.+ - +.+.++.+.
T Consensus 257 ~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvldlV~~ 322 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVLDLVRK 322 (700)
T ss_pred CCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHHHHHHH
Confidence 124667778865332 1 23578999999999987654444444332221 1111111 1 223333333
Q ss_pred cC---CCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCC-cee
Q 008345 220 GL---RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSV 295 (569)
Q Consensus 220 ~l---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~-~~~ 295 (569)
.+ ++...++.- ....+-.-.+.++.-+... +.+-+|| |-+++....+...+.+.|.. +++
T Consensus 323 i~k~TGd~vev~~Y-------------eRl~pL~v~~~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 323 ILKMTGDDVEVREY-------------ERLSPLVVEETALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHhhcCCeeEEEee-------------cccCcceehhhhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEE
Confidence 22 222222111 0011100011233334333 2344444 55677788899999888766 999
Q ss_pred ecCCCCHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCCCEEEEcCCC---------CChhHHHHHhhccccCCCc-
Q 008345 296 CYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDFP---------PKPKIFVHRVGRAARAGRT- 363 (569)
Q Consensus 296 i~g~l~~~~R~~~l~~F~~--g~~~ILV~Tdv~arGlDip~v~~VI~~d~p---------~s~~~~~qrvGR~gR~g~~- 363 (569)
|||+++++.|...-..|.+ ++++||||||+++.|+|+ +++-||.|++- .+.....|.+||+||.|..
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999987 899999999999999999 57888887753 3566789999999998653
Q ss_pred --cEEEEEeccccHHHHHHHHHHhCCCc
Q 008345 364 --GTAFSFVTSEDMAYLLDLHLFLSKPI 389 (569)
Q Consensus 364 --G~~i~~v~~~e~~~~~~l~~~l~~~~ 389 (569)
|.+.++..+ |+..+. ..+..+.
T Consensus 466 ~~G~vTtl~~e-DL~~L~---~~l~~p~ 489 (700)
T KOG0953|consen 466 PQGEVTTLHSE-DLKLLK---RILKRPV 489 (700)
T ss_pred cCceEEEeeHh-hHHHHH---HHHhCCc
Confidence 766666544 444444 3444443
No 141
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=4.6e-15 Score=139.54 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 45 VPTPIQRKTMPLILS-------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~-------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
.|+|+|.+++..+.. .+.+++.++||||||.+++..+.+... +++|++|+..|+.|+.+.+..+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhh
Confidence 389999999998884 588999999999999988855554432 69999999999999999887665
Q ss_pred ccCCCeEE-----------EEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC----------CCCCCeeEEEEeC
Q 008345 118 RYTDLRIS-----------LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED----------MSLKSVEYVVFDE 176 (569)
Q Consensus 118 ~~~~l~~~-----------~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~----------~~l~~l~~iViDE 176 (569)
........ ...................++++.|...+......... ......++||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 33111100 01111111222233346789999999999877654111 2234678999999
Q ss_pred CCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
||+..... ....++. .....+|+|||||++
T Consensus 155 aH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 155 AHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp GGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred hhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99965432 1444544 456779999999863
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=9.3e-14 Score=154.43 Aligned_cols=320 Identities=21% Similarity=0.330 Sum_probs=225.4
Q ss_pred CChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l 122 (569)
...|+|.++++.+.. +.++++.+|+|||||+++-+.++. ...-.+++++.|.-+.+.-.+. |-++|+...|+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 348999999998766 466999999999999998866664 2234579999999999987664 77889988999
Q ss_pred eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC------hHHHHHHHHHhc
Q 008345 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG------FAEQLHKILGQL 196 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~------f~~~l~~i~~~~ 196 (569)
.+..+.|..+.+.. +....+|+|+||+++-.+ . ....+++.|.||.|.+.+.. .-. +..|-..+
T Consensus 1217 ~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~ 1286 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL 1286 (1674)
T ss_pred eEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH
Confidence 99999998887643 345688999999998644 2 46789999999999987432 111 55566666
Q ss_pred CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch---hhHH----HHHHHHHHHhcCCCCcE
Q 008345 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKH----AALLYMIREHISSDQQT 269 (569)
Q Consensus 197 ~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~k~----~~L~~ll~~~~~~~~~~ 269 (569)
.++.+++.+|..+.+. .++ .++....++.+.....+.|. ......+.. .... ...+..+..+...+.++
T Consensus 1287 ~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl-~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~ 1362 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPL-EIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPA 1362 (1674)
T ss_pred HhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCce-eEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCe
Confidence 6778899999887654 333 45555556666655555442 222222222 1121 22334455555678899
Q ss_pred EEEEcChhhHHHHHHHHHH----------------------CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 270 LIFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 270 IIF~~t~~~~~~l~~~L~~----------------------~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
+||+++++++..++..|-. ..+++.+-|.+++......+-..|..|.+.|+|...- .
T Consensus 1363 ~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~ 1441 (1674)
T KOG0951|consen 1363 IVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-C 1441 (1674)
T ss_pred EEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-c
Confidence 9999999999876654421 1223334477888888888899999999999998765 7
Q ss_pred ccCCCCCCCEEE----EcC------CCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 328 RGIDIPLLDNVI----NWD------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 328 rGlDip~v~~VI----~~d------~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
.|+-...--+|+ .|| .+.......|++|++.|+ |.|+++.......|+.+ |+..+++.
T Consensus 1442 ~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk---fl~e~lPv 1509 (1674)
T KOG0951|consen 1442 YGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK---FLYEPLPV 1509 (1674)
T ss_pred ccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH---hccCcCch
Confidence 777665433333 233 234567889999999985 78999988887777654 66655543
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3e-14 Score=158.58 Aligned_cols=127 Identities=23% Similarity=0.262 Sum_probs=106.0
Q ss_pred EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-ceEEEEe
Q 008345 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVT 323 (569)
Q Consensus 245 ~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~-~~ILV~T 323 (569)
+....+|+.++...+.+....+.|+||-+.|....+.++.+|...|++..+++......+-..+- +.|+ -.|.|||
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIAT 683 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIAT 683 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEec
Confidence 33456789999999999888999999999999999999999999999998888775433333332 2443 3589999
Q ss_pred ccccccCCCC--------CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 324 DVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 324 dv~arGlDip--------~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
++|+||-||. +=-+||-...+.|.+.-.|-.||+||.|.+|.+-.|++-+|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999997 23578888899999999999999999999999998888654
No 144
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.61 E-value=1.3e-13 Score=140.49 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=204.3
Q ss_pred CCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 43 YKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+..+-|+|++.+...+. |..+++....|-|||.-++.-+-.... ....||+||..-+ ..|.+.+.+|.....
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra------EwplliVcPAsvr-ftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA------EWPLLIVCPASVR-FTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh------cCcEEEEecHHHh-HHHHHHHHHhccccc
Confidence 34578999999987665 677999999999999866522222211 2448999997543 445666666543222
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCc
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q 201 (569)
.+.++.++.... ..+.....|.|.+++.+.++-.- +.-..+.++|+||+|.+-+.. ..+...++.-+.....
T Consensus 269 -pi~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 -PIFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred -ceEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 233444443221 11223466899999877655432 444568999999999987643 4445666555556678
Q ss_pred EEEEEecC----ChH---------------HHHHHHhcCCCCeeeee--c--------------------------cccc
Q 008345 202 TLLFSATL----PSA---------------LAEFAKAGLRDPHLVRL--D--------------------------VDTK 234 (569)
Q Consensus 202 ~ll~SAT~----~~~---------------~~~~~~~~l~~~~~i~~--~--------------------------~~~~ 234 (569)
+||+|+|+ |.+ ..+|+..|+.. ..++. + .-..
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~-k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDG-KQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCc-cccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999997 222 23333333321 11111 1 0011
Q ss_pred cCCCceEEEEEcchh-------------------------------------hHHHHHHHHHHH----hcCCCCcEEEEE
Q 008345 235 ISPDLKLAFFTLRQE-------------------------------------EKHAALLYMIRE----HISSDQQTLIFV 273 (569)
Q Consensus 235 ~~~~~~~~~~~~~~~-------------------------------------~k~~~L~~ll~~----~~~~~~~~IIF~ 273 (569)
.++..+...+.+... -|..++.+.|.. .-.+..+.+|||
T Consensus 420 LPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFa 499 (689)
T KOG1000|consen 420 LPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFA 499 (689)
T ss_pred CCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEe
Confidence 222222222222210 022333333333 113567899999
Q ss_pred cChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceE-EEEeccccccCCCCCCCEEEEcCCCCChhHHH
Q 008345 274 STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351 (569)
Q Consensus 274 ~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g-~~~I-LV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~ 351 (569)
--....+-+...+.+.++....|+|..+...|....+.|+.. ++.| +++--.+..|+++...++|+...++++|...+
T Consensus 500 HH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLl 579 (689)
T KOG1000|consen 500 HHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLL 579 (689)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEE
Confidence 998889999999999999999999999999999999999864 5555 45667889999999999999999999999999
Q ss_pred HHhhccccCCCccEE
Q 008345 352 HRVGRAARAGRTGTA 366 (569)
Q Consensus 352 qrvGR~gR~g~~G~~ 366 (569)
|.-.|+.|.|++.-+
T Consensus 580 QAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 580 QAEDRAHRIGQKSSV 594 (689)
T ss_pred echhhhhhcccccee
Confidence 999999999997544
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.61 E-value=1.7e-12 Score=146.25 Aligned_cols=120 Identities=18% Similarity=0.288 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc----CCceEEEEeccc
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA----RKTMFLIVTDVA 326 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~----g~~~ILV~Tdv~ 326 (569)
-...+...|......++.++||++|....+.++..|....-.....+|.. .|..+++.|++ ++-.||++|...
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34456666655555566799999999999999998874322234555642 46677777764 678899999999
Q ss_pred cccCCCCC--CCEEEEcCCCCC-hh-----------------------------HHHHHhhccccCCCccEEEEEeccc
Q 008345 327 ARGIDIPL--LDNVINWDFPPK-PK-----------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 327 arGlDip~--v~~VI~~d~p~s-~~-----------------------------~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
++|||+|+ +++||...+|.. |. .+.|.+||.-|...+--++.++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999997 688988887732 11 1478889999976542234444543
No 146
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.1e-14 Score=148.13 Aligned_cols=344 Identities=14% Similarity=0.067 Sum_probs=232.1
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc-
Q 008345 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG- 117 (569)
Q Consensus 39 ~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~- 117 (569)
..+--+....+|.+++..+.+|+++++.-.|.+||.+++.......+... +....+++.|+.+++....+.+.-..
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEEEEE
Confidence 34455668899999999999999999999999999999987776554432 23447999999999875333221110
Q ss_pred ccCCC--eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC---CCCCCCeeEEEEeCCCccCCCC---hHHHH
Q 008345 118 RYTDL--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMG---FAEQL 189 (569)
Q Consensus 118 ~~~~l--~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~---~~~l~~l~~iViDEah~l~~~~---f~~~l 189 (569)
.-... -++-.++|.+..........+..++++.|........-.. ..++-...+++.||+|.....- ...++
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 00111 2334466676666666677899999999987654332211 1234556789999999766431 12233
Q ss_pred HHHHHh---c--CCCCcEEEEEecCChHHHHHHHh-cCCCCeeeeeccccccCCCceEEEEEcc---------hhhHHHH
Q 008345 190 HKILGQ---L--SENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLR---------QEEKHAA 254 (569)
Q Consensus 190 ~~i~~~---~--~~~~q~ll~SAT~~~~~~~~~~~-~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~k~~~ 254 (569)
.++.+. + ..+.|++-.|||+...+.-.... ++....++..+... ..-.+.++.-+ .+.+..+
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhhhHHHH
Confidence 333222 2 24679999999997665433332 34444555554322 11222222111 1234555
Q ss_pred HHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCC----CceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 255 L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~----~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
...++.+.+..+-++|-||.+++.|+.+-...++ .+. .+...-|+-..++|..+....-.|+..-+|+|+.+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 5566666666788999999999999977554443 221 12334577788888888888889999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEec--cccHHHHHHHHHHhCCC
Q 008345 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSKP 388 (569)
Q Consensus 327 arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~--~~e~~~~~~l~~~l~~~ 388 (569)
.-||||-.++.|+..++|.+...+.|..||+||..++..++.++. |-|-.|+...+..++.+
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 999999999999999999999999999999999998877755554 55666666666555544
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.59 E-value=2e-13 Score=151.58 Aligned_cols=343 Identities=19% Similarity=0.250 Sum_probs=223.2
Q ss_pred CCCCCCCCCCHHHHHHHH-HCC-------------CC-------CChHHHHHHHHHHh--c--CCcEEEEcCCCchHHHH
Q 008345 22 SGGFESLNLSPNVFRAIK-RKG-------------YK-------VPTPIQRKTMPLIL--S--GADVVAMARTGSGKTAA 76 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~-~~g-------------~~-------~~t~iQ~~~i~~il--~--g~dvl~~a~TGSGKT~a 76 (569)
.|.+.--|+|++++.... ++. |+ .++.||++.++.+. . +=+.|++...|-|||+-
T Consensus 931 ~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQ 1010 (1549)
T KOG0392|consen 931 AGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQ 1010 (1549)
T ss_pred cCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHH
Confidence 344555678888877632 112 22 46889999987653 2 34689999999999985
Q ss_pred HHHHHHHHhhhc---CC-CCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcH
Q 008345 77 FLVPMLQRLNQH---VP-QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG 152 (569)
Q Consensus 77 ~lip~l~~l~~~---~~-~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~ 152 (569)
.+--+..-.... .. -.....||+||. .|+-.|..++++|..+ +++...+|+.......+.--++.+|+|+.++
T Consensus 1011 ticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYD 1087 (1549)
T KOG0392|consen 1011 TICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYD 1087 (1549)
T ss_pred HHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHH
Confidence 442222221111 11 123448999996 6788888888888766 7888888887666655555567899999999
Q ss_pred HHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC-ChHHHHHHHh---cC-------
Q 008345 153 RLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA---GL------- 221 (569)
Q Consensus 153 rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~-~~~~~~~~~~---~l------- 221 (569)
-+.+-... +.-.++.|+|+||-|-+-+. ...+...+..+..+.+ +.+|+|| -+++.++... .|
T Consensus 1088 v~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1088 VVRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred HHHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 87533222 22345789999999998764 4566666777765554 6668886 1222221110 00
Q ss_pred -------CCCeeeeeccc---------------------------------cccCCCceEEEEEc-c-------------
Q 008345 222 -------RDPHLVRLDVD---------------------------------TKISPDLKLAFFTL-R------------- 247 (569)
Q Consensus 222 -------~~~~~i~~~~~---------------------------------~~~~~~~~~~~~~~-~------------- 247 (569)
..|..-..+.. ...++.+.+.|++- .
T Consensus 1162 KqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~ 1241 (1549)
T KOG0392|consen 1162 KQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK 1241 (1549)
T ss_pred HHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH
Confidence 00100000000 00111111111110 0
Q ss_pred ------------------------------------------------------------------hhhHHHHHHHHHHH
Q 008345 248 ------------------------------------------------------------------QEEKHAALLYMIRE 261 (569)
Q Consensus 248 ------------------------------------------------------------------~~~k~~~L~~ll~~ 261 (569)
...|..+|.++|.+
T Consensus 1242 ~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1242 AKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred hccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHH
Confidence 01133444444443
Q ss_pred hc-C-------------CCCcEEEEEcChhhHHHHHHHHHHC-CCC--ceeecCCCCHHHHHHHHHHHhcC-CceEEE-E
Q 008345 262 HI-S-------------SDQQTLIFVSTKHHVEFLNVLFREE-GLE--PSVCYGDMDQDARKIHVSRFRAR-KTMFLI-V 322 (569)
Q Consensus 262 ~~-~-------------~~~~~IIF~~t~~~~~~l~~~L~~~-~~~--~~~i~g~l~~~~R~~~l~~F~~g-~~~ILV-~ 322 (569)
.- . .++++||||.-+...+.+..-|-+. -.. ...+.|+.++.+|.++.++|.++ .++||+ +
T Consensus 1322 CGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1322 CGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred hCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 21 0 3568999999999998887666543 333 34789999999999999999998 678865 8
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccE--EEEEeccc
Q 008345 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSE 373 (569)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~--~i~~v~~~ 373 (569)
|.|.+-|+|+.+.|.||.++--++|-.=+|.+-||.|.|++.. +|-+++..
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 8999999999999999999999999999999999999999854 46777765
No 148
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.57 E-value=1e-13 Score=148.36 Aligned_cols=320 Identities=19% Similarity=0.284 Sum_probs=211.6
Q ss_pred ChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 46 PTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 46 ~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+-|||.-.++.+. .+-+.|+....|-|||.- ++..+..|.+... +|+ -||+||..-|-.+ ...+.+|+ ..
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-~gp-HLVVvPsSTleNW-lrEf~kwC--Ps 473 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-PGP-HLVVVPSSTLENW-LREFAKWC--PS 473 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-CCC-cEEEecchhHHHH-HHHHHHhC--Cc
Confidence 8899999887653 244679999999999953 3444455554322 455 6999998776543 33344454 56
Q ss_pred CeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 122 LRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
+++-..+|......+.+... ..++|+|+|+.-.-.--....-+.-.++.++|+||+|.+-++. .++...++. ++
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~-I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS-IN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc-cc
Confidence 89999999875554443322 2689999998644321111111334568899999999988775 334444332 33
Q ss_pred CCCcEEEEEecCC-hHHHHHHH---------------------------------------------hcCCCCeeeeecc
Q 008345 198 ENRQTLLFSATLP-SALAEFAK---------------------------------------------AGLRDPHLVRLDV 231 (569)
Q Consensus 198 ~~~q~ll~SAT~~-~~~~~~~~---------------------------------------------~~l~~~~~i~~~~ 231 (569)
....||+|+||- +.+.+++. ..+. |.+.+-..
T Consensus 552 -An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~-PFILRR~K 629 (941)
T KOG0389|consen 552 -ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMK-PFILRRLK 629 (941)
T ss_pred -ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 445577788861 11111110 0000 00000000
Q ss_pred c---cccCCCceE-EEEEc-------------------------------------------------------------
Q 008345 232 D---TKISPDLKL-AFFTL------------------------------------------------------------- 246 (569)
Q Consensus 232 ~---~~~~~~~~~-~~~~~------------------------------------------------------------- 246 (569)
+ ...++..++ .++.+
T Consensus 630 ~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak 709 (941)
T KOG0389|consen 630 SQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAK 709 (941)
T ss_pred HHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHH
Confidence 0 000000000 00000
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhcCCCCcEEEEEcChhh
Q 008345 247 ------------------------------------------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHH 278 (569)
Q Consensus 247 ------------------------------------------------~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~ 278 (569)
....|...|..+|.+....+.++|||..-...
T Consensus 710 ~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqm 789 (941)
T KOG0389|consen 710 RILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQM 789 (941)
T ss_pred HHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHH
Confidence 01126667777777777788999999988788
Q ss_pred HHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-c-eEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhc
Q 008345 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-T-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGR 356 (569)
Q Consensus 279 ~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~-~-~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR 356 (569)
.+-+..+|...++....+.|...-..|..+++.|...+ + -.|++|-+.+-|||+...++||.+|+-.+|-+=.|.--|
T Consensus 790 LDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDR 869 (941)
T KOG0389|consen 790 LDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDR 869 (941)
T ss_pred HHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHH
Confidence 88888889999999999999999999999999998764 3 357899999999999999999999999999888999999
Q ss_pred cccCCCc--cEEEEEeccccH
Q 008345 357 AARAGRT--GTAFSFVTSEDM 375 (569)
Q Consensus 357 ~gR~g~~--G~~i~~v~~~e~ 375 (569)
+.|.|+. -.+|-+++.+-+
T Consensus 870 cHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 870 CHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHhhCCcceeEEEEEEecCcH
Confidence 9999886 566888887644
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.52 E-value=4e-14 Score=114.48 Aligned_cols=81 Identities=38% Similarity=0.647 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC
Q 008345 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 281 ~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
.+...|...++.+..+||++++.+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008345 361 G 361 (569)
Q Consensus 361 g 361 (569)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.52 E-value=1.9e-12 Score=146.35 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=75.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHCCCC-ceeecCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCCC--CCEEEEc
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPL--LDNVINW 341 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~l~~~~R~~~l~~F~~g~~-~ILV~Tdv~arGlDip~--v~~VI~~ 341 (569)
+++++||++|....+.+.+.+...... ....+| ...+...++.|..+.- .++|+|...++|+|+|+ +..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecC---CCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 458999999999999999999876653 233333 3344577888887655 89999999999999997 4678877
Q ss_pred CCCCC------------------------------hhHHHHHhhccccCCCccEEEEEecc
Q 008345 342 DFPPK------------------------------PKIFVHRVGRAARAGRTGTAFSFVTS 372 (569)
Q Consensus 342 d~p~s------------------------------~~~~~qrvGR~gR~g~~G~~i~~v~~ 372 (569)
.+|.- ...+.|.+||+-|.-.+.-++.+++.
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 77632 23359999999996544333334443
No 151
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.51 E-value=1.2e-12 Score=146.63 Aligned_cols=326 Identities=23% Similarity=0.213 Sum_probs=185.4
Q ss_pred CChHHHHHHHHHHhc--------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 45 VPTPIQRKTMPLILS--------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~--------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.-+.+|-+|+..+.. |-=+|.||.||+|||++=.= |...|.. ...|.|..|-.--|.|..|+-+.+++-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD--DKQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC--CCCCceEEEEccccceeccchHHHHHh
Confidence 457799999988764 22278899999999987552 2222222 235789999999999999999988875
Q ss_pred cccCCCeEEEEEcCCCHHHHHH-------------------------------------------HHcC--------CCC
Q 008345 117 GRYTDLRISLLVGGDSMESQFE-------------------------------------------ELAQ--------NPD 145 (569)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~-------------------------------------------~l~~--------~~~ 145 (569)
....+-..++++||....+.++ .+.. ..+
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 4444445666666643322221 0000 246
Q ss_pred EEEECcHHHHHHHhhcC--CCCCC----CeeEEEEeCCCccCCCC--hHHHHHHHHHhcCCCCcEEEEEecCChHHHHH-
Q 008345 146 IIIATPGRLMHHLSEVE--DMSLK----SVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSATLPSALAEF- 216 (569)
Q Consensus 146 IiV~Tp~rl~~~l~~~~--~~~l~----~l~~iViDEah~l~~~~--f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~- 216 (569)
|+|||+..++-...... ...+. .-+.|||||+|...... +...+.+....+ +..++++|||+|+.+...
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~l--G~~VlLmSATLP~~l~~~L 642 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLL--GSRVLLSSATLPPALVKTL 642 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHc--CCCEEEEeCCCCHHHHHHH
Confidence 99999998876552211 11111 12469999999855432 223333333333 578999999999986542
Q ss_pred HHhc----------CCC---Ceeeeec-ccc------------------------------ccCCCceEEEEEcchh---
Q 008345 217 AKAG----------LRD---PHLVRLD-VDT------------------------------KISPDLKLAFFTLRQE--- 249 (569)
Q Consensus 217 ~~~~----------l~~---~~~i~~~-~~~------------------------------~~~~~~~~~~~~~~~~--- 249 (569)
..+| .+. +..|... .+. ..+....-....++..
T Consensus 643 ~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~ 722 (1110)
T TIGR02562 643 FRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRE 722 (1110)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccc
Confidence 2222 121 1111110 000 0001111111222221
Q ss_pred --hHHHHHHHHHHHhc-----------C-CCCc---EEEEEcChhhHHHHHHHHHHC----C--CCceeecCCCCHHHHH
Q 008345 250 --EKHAALLYMIREHI-----------S-SDQQ---TLIFVSTKHHVEFLNVLFREE----G--LEPSVCYGDMDQDARK 306 (569)
Q Consensus 250 --~k~~~L~~ll~~~~-----------~-~~~~---~IIF~~t~~~~~~l~~~L~~~----~--~~~~~i~g~l~~~~R~ 306 (569)
.....+...+.+.. + .+.+ .+|-+++...+-.++..|... + +...+.|+......|.
T Consensus 723 ~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs 802 (1110)
T TIGR02562 723 NESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRS 802 (1110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHH
Confidence 12222222222110 1 1222 466667777666666666543 3 2356678887666655
Q ss_pred HHHHHH----------------------hc----CCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC
Q 008345 307 IHVSRF----------------------RA----RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 307 ~~l~~F----------------------~~----g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
.+.+.. .+ +..-|+|+|++++-|+|+. .+++|- -|.+....+||+||+.|.
T Consensus 803 ~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~ 879 (1110)
T TIGR02562 803 YIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRH 879 (1110)
T ss_pred HHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccc
Confidence 443331 11 4668999999999999994 555553 366789999999999998
Q ss_pred CCc--cEEEEEeccccHHHH
Q 008345 361 GRT--GTAFSFVTSEDMAYL 378 (569)
Q Consensus 361 g~~--G~~i~~v~~~e~~~~ 378 (569)
|.. +..-+++-..++.++
T Consensus 880 ~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 880 RLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred ccCCCCCCcEEEeHhHHHHh
Confidence 763 333344445566665
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=1.6e-11 Score=128.30 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=170.9
Q ss_pred CCCEEEECcHHHHHHHhhc-----CCCCCCCeeEEEEeCCCccCC--CChHHHHHHHHHhcCCC----------------
Q 008345 143 NPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFG--MGFAEQLHKILGQLSEN---------------- 199 (569)
Q Consensus 143 ~~~IiV~Tp~rl~~~l~~~-----~~~~l~~l~~iViDEah~l~~--~~f~~~l~~i~~~~~~~---------------- 199 (569)
..|||||+|=.|...+... ..--|++++++|+|.||-++- |.....+-..+...|.+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 4799999998888777631 112389999999999998764 33333444444444432
Q ss_pred -----CcEEEEEecCChHHHHHHHhcCCCCe-eeeecc--c-----cccCCCceEEEEEcch-------hhHHHHHHHHH
Q 008345 200 -----RQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--D-----TKISPDLKLAFFTLRQ-------EEKHAALLYMI 259 (569)
Q Consensus 200 -----~q~ll~SAT~~~~~~~~~~~~l~~~~-~i~~~~--~-----~~~~~~~~~~~~~~~~-------~~k~~~L~~ll 259 (569)
+|+|++|+...+++..+.+..+.|.. .+++.. . ......+.|.|..++. +.+.......+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 59999999999999999988665542 222221 1 2344567777775443 22333333322
Q ss_pred HHh---cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc--ccCCCCC
Q 008345 260 REH---ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA--RGIDIPL 334 (569)
Q Consensus 260 ~~~---~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a--rGlDip~ 334 (569)
... -.....+|||++|.-+--.+..+|.+.++....++...++.+-.+.-..|.+|+.+||+.|.=+- +-..|.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 211 23567899999999988899999999999999999999999988888999999999999996543 6677889
Q ss_pred CCEEEEcCCCCChhHHHHHhhccccCCC------ccEEEEEeccccHHHH
Q 008345 335 LDNVINWDFPPKPKIFVHRVGRAARAGR------TGTAFSFVTSEDMAYL 378 (569)
Q Consensus 335 v~~VI~~d~p~s~~~~~qrvGR~gR~g~------~G~~i~~v~~~e~~~~ 378 (569)
+.+||.|++|..|.-|...++-.+.... ...|.++++.-|...+
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~L 420 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRL 420 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHH
Confidence 9999999999999999777765555433 4688888887665443
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=1.4e-11 Score=139.75 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=60.5
Q ss_pred CCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 41 KGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
..|..++|.|++.+..+. .+.++++.||||+|||++.+.|.+....... ...++++++.|..-..|..+.+++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 367777999998886654 4788999999999999999999998665431 2357999999999999988888874
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.38 E-value=2.8e-12 Score=140.56 Aligned_cols=318 Identities=18% Similarity=0.259 Sum_probs=202.9
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.+.+||.+.+..+.+ +-+.++.-.+|-|||..- +.++..|.++....|+ -||++|+-.|..+..++ ..++ .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~~GP-~LvivPlstL~NW~~Ef-~kWa--P 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQMQGP-FLIIVPLSTLVNWSSEF-PKWA--P 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcccCCC-eEEeccccccCCchhhc-cccc--c
Confidence 689999999977654 345889999999999764 4555566666555676 69999999988764442 2222 2
Q ss_pred CCeEEEEEcCCCHHHHH--HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC
Q 008345 121 DLRISLLVGGDSMESQF--EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~--~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~ 198 (569)
.+..+...|......-+ .......+|+++|++.++. ...-+.--++.++||||.|+|.+. ...+...+...-.
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 34444444433222211 2334689999999987764 111233346789999999998753 2233333332222
Q ss_pred CCcEEEEEecC---------------------------------------------------------------------
Q 008345 199 NRQTLLFSATL--------------------------------------------------------------------- 209 (569)
Q Consensus 199 ~~q~ll~SAT~--------------------------------------------------------------------- 209 (569)
....+|+++|+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 22334444443
Q ss_pred ------ChHHHHHHHhcC-----------C-CCeeeeecc--cccc----------------CC----Cc----eEEE--
Q 008345 210 ------PSALAEFAKAGL-----------R-DPHLVRLDV--DTKI----------------SP----DL----KLAF-- 243 (569)
Q Consensus 210 ------~~~~~~~~~~~l-----------~-~~~~i~~~~--~~~~----------------~~----~~----~~~~-- 243 (569)
|..++...+--+ . .+.. .++. .... .+ ++ ...+
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l-~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQL-LKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCC-CcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 111110000000 0 0000 0000 0000 00 00 0000
Q ss_pred -EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc---eE
Q 008345 244 -FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT---MF 319 (569)
Q Consensus 244 -~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~---~I 319 (569)
..++...|...|-++|-+....++.++.||.-.....-+..+|.-.++....++|....++|-..+..|..-.. ..
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 00112235555555555555678999999999899999999999999999999999999999999999987543 35
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEE--EEEeccc
Q 008345 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (569)
Q Consensus 320 LV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~~ 373 (569)
|..|.....|+|+..++.||.||.-++|..+.|+.-|+.|.|+...+ +.+++-.
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~ 838 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVN 838 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhh
Confidence 77999999999999999999999999999999999999999987555 4444443
No 155
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.35 E-value=5e-11 Score=131.53 Aligned_cols=319 Identities=23% Similarity=0.283 Sum_probs=203.3
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
|.. |+++|.- -.+.-+..-++-..||-|||++..+|+.-... .|..+.+++..--||.--..++..+-.+.|
T Consensus 78 g~~-~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----~gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMR-HFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----AGKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCC-hhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhc-----CCCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 554 5555544 34444455788999999999999999854432 366789999999999988889999888999
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccC-----------C--
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-----------G-- 182 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~-----------~-- 182 (569)
+.+++...+.+.++..... .+||..+|...| ++++..+ ...-...+.+.|+||+|.++ .
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998877665554 589999999877 4444331 11124457899999999765 1
Q ss_pred ---CChHHHHHHHHHhcCCCC--------cEEEEE---------------------------------------------
Q 008345 183 ---MGFAEQLHKILGQLSENR--------QTLLFS--------------------------------------------- 206 (569)
Q Consensus 183 ---~~f~~~l~~i~~~~~~~~--------q~ll~S--------------------------------------------- 206 (569)
......+..++..+.... +.+.++
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 112344444443332211 111111
Q ss_pred ----------------------------------------------------------------ecCChHHHHHHHhcCC
Q 008345 207 ----------------------------------------------------------------ATLPSALAEFAKAGLR 222 (569)
Q Consensus 207 ----------------------------------------------------------------AT~~~~~~~~~~~~l~ 222 (569)
+|--.+..+|...+..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 1111111111111100
Q ss_pred CCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCH
Q 008345 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (569)
Q Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~ 302 (569)
..+.++...+....-....+......|+.+++..+......+.|+||-+.+....+.++..|.+.|++...+...-.
T Consensus 388 --~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h- 464 (822)
T COG0653 388 --DVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH- 464 (822)
T ss_pred --ceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH-
Confidence 01111111100000011112223467899999999998899999999999999999999999999999888876644
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE-----------EEEcCCCCChhHHHHHhhccccCCCccEEEEEec
Q 008345 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~-----------VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~ 371 (569)
.++..+-.+.-..-.|-|+|++|+||-||.--.. ||--.--.|-..=-|.-||+||.|.+|.+-.|++
T Consensus 465 -~~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 465 -AREAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred -HHHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 4443333332223358899999999999974332 3433333333334699999999999999987777
Q ss_pred ccc
Q 008345 372 SED 374 (569)
Q Consensus 372 ~~e 374 (569)
-+|
T Consensus 544 leD 546 (822)
T COG0653 544 LED 546 (822)
T ss_pred hHH
Confidence 544
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.30 E-value=2.1e-10 Score=126.01 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=180.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcC
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~ 142 (569)
.++.||+|||||.+..-++-+.+. .++.++|+++-.+.|+.++...++..+- .|+....-.++..+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 678999999999876543333222 2467899999999999999888876431 122211111111110 11
Q ss_pred CCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh------HHHHHH-HHHhcCCCCcEEEEEecCChHHHH
Q 008345 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF------AEQLHK-ILGQLSENRQTLLFSATLPSALAE 215 (569)
Q Consensus 143 ~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f------~~~l~~-i~~~~~~~~q~ll~SAT~~~~~~~ 215 (569)
..+-+++..+.|.++.. -.+.++++||+||+...+..=| ..+..+ +...+.....+|++-||+.....+
T Consensus 121 ~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 35677777777765432 2367799999999987664311 122222 333455677899999999999999
Q ss_pred HHHhcCCCCeeeeeccccccCCCceEEEEEcc-----------------------------------hhhHHHHHHHHHH
Q 008345 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-----------------------------------QEEKHAALLYMIR 260 (569)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~k~~~L~~ll~ 260 (569)
|.....++..+-.+..+...+.-.......++ ...........|.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 99986554333222211110000000000000 0011234556666
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC--CEE
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--DNV 338 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v--~~V 338 (569)
..+..+.++-||++|...++.+++........+..++|.-+..+ ++. =++.+|+|-|+++.-|+++-.. +-+
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 66778899999999999999999999888888888877655542 122 3578999999999999999753 223
Q ss_pred EEcCCC----CChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 339 INWDFP----PKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 339 I~~d~p----~s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
.-|=-| .+..+..|.+||+-.-. ....++++...
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 333112 34566899999996553 45566666543
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.24 E-value=9.2e-09 Score=119.25 Aligned_cols=298 Identities=20% Similarity=0.170 Sum_probs=164.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+..+++--||||||+..+..+ ..+... ...+.+++|+-+++|-.|+.+.++.++....... ...+..+..+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 459999999999998754332 233332 3467899999999999999999999875432211 445566666666
Q ss_pred cCC-CCEEEECcHHHHHHHhhcCCCCCC-CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHH-H
Q 008345 141 AQN-PDIIIATPGRLMHHLSEVEDMSLK-SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF-A 217 (569)
Q Consensus 141 ~~~-~~IiV~Tp~rl~~~l~~~~~~~l~-~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~-~ 217 (569)
..+ ..|||+|-..|-..+......... +==+||+|||||.-.-.....+ -..++ +...++||+||--.-..- .
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~---~~~~~-~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL---KKALK-KAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH---HHHhc-cceEEEeeCCccccccccch
Confidence 644 489999999988777653111122 2236899999995432222223 23333 477899999972211111 1
Q ss_pred HhcCCCCe-eeeeccccccCCCceEEEEEc-ch-------h-------h----------------------------H--
Q 008345 218 KAGLRDPH-LVRLDVDTKISPDLKLAFFTL-RQ-------E-------E----------------------------K-- 251 (569)
Q Consensus 218 ~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~-~~-------~-------~----------------------------k-- 251 (569)
...++++. .+.+...-.....+...|... .. . . +
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 11112211 111111100001111111111 00 0 0 0
Q ss_pred --HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCC-----------ceee------------cCCCCHHHHH
Q 008345 252 --HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-----------PSVC------------YGDMDQDARK 306 (569)
Q Consensus 252 --~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~-----------~~~i------------~g~l~~~~R~ 306 (569)
...+..........+.++++.++++..+..+.+........ ..+. |... ...+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHh
Confidence 00111111111223557777777777333333322211000 0000 1111 11222
Q ss_pred HHHHHH--hcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC--C--CccEEEEEec
Q 008345 307 IHVSRF--RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--G--RTGTAFSFVT 371 (569)
Q Consensus 307 ~~l~~F--~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~--g--~~G~~i~~v~ 371 (569)
....+| .....++||++|+.-.|+|.|.+.. +..|-|.-.-..+|.+.|+.|. + ..|..+.|+.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 333443 4567899999999999999997654 4568888888899999999995 3 2377766666
No 158
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.9e-10 Score=114.67 Aligned_cols=333 Identities=19% Similarity=0.237 Sum_probs=211.3
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEc-CCCchH--HHHHHHHHHHHhhhcC------------C--------------CCC
Q 008345 43 YKVPTPIQRKTMPLILSGADVVAMA-RTGSGK--TAAFLVPMLQRLNQHV------------P--------------QGG 93 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~g~dvl~~a-~TGSGK--T~a~lip~l~~l~~~~------------~--------------~~g 93 (569)
=..+|+.|.+.+..+.+.+|++.-- ..+.|+ +-+|.+-++.++.+.. . -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 3579999999999988999987532 224555 4567778877763210 0 124
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCC-eE--------EEEEcCC--------CHHHHHH------------------
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDL-RI--------SLLVGGD--------SMESQFE------------------ 138 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l-~~--------~~~~gg~--------~~~~~~~------------------ 138 (569)
++|||+||+|+-|..+.+.+..+..+.+- ++ .--++|. ..++.++
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 78999999999999999887776322211 11 1111210 0011111
Q ss_pred -----HH--cCCCCEEEECcHHHHHHHhhcCC----C-CCCCeeEEEEeCCCccCCCChHHHHHHHHHhc---CCC----
Q 008345 139 -----EL--AQNPDIIIATPGRLMHHLSEVED----M-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL---SEN---- 199 (569)
Q Consensus 139 -----~l--~~~~~IiV~Tp~rl~~~l~~~~~----~-~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~---~~~---- 199 (569)
.. ....||+||+|=.|--++.+.+. + -++++.++|||-||.++...| +-+..|+.++ |..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 11 12579999999877666653211 2 278899999999999876553 3344444443 322
Q ss_pred -----------------CcEEEEEecCChHHHHHHHhcCCCCe-eeeecc--cc-c---cCCCceEEEE--Ecc-----h
Q 008345 200 -----------------RQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--DT-K---ISPDLKLAFF--TLR-----Q 248 (569)
Q Consensus 200 -----------------~q~ll~SAT~~~~~~~~~~~~l~~~~-~i~~~~--~~-~---~~~~~~~~~~--~~~-----~ 248 (569)
+|+++||+--.+....+...++.|.. .+.... .. . ....+.+.|. .+. +
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 48999999988887777777665432 111110 00 0 0011222221 111 2
Q ss_pred hhHHHHHHHHHHH-hcC-CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 249 EEKHAALLYMIRE-HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 249 ~~k~~~L~~ll~~-~~~-~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
+.+.......|-- ... ....+|||.++.-.--++..++.+..+..+.++...++..-.+.-+-|-.|...||+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 2333333332221 111 23468999999998888999999998888888877777766666778999999999999765
Q ss_pred c--ccCCCCCCCEEEEcCCCCChhHH---HHHhhccccCCCc----cEEEEEeccccHH
Q 008345 327 A--RGIDIPLLDNVINWDFPPKPKIF---VHRVGRAARAGRT----GTAFSFVTSEDMA 376 (569)
Q Consensus 327 a--rGlDip~v~~VI~~d~p~s~~~~---~qrvGR~gR~g~~----G~~i~~v~~~e~~ 376 (569)
- |-.+|.+|..||.|.+|..|.-| +.+.+|+.-.|+. -.|.++++.-|.-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 4 78899999999999999998777 5666666554432 3566666665543
No 159
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.22 E-value=2.3e-11 Score=107.04 Aligned_cols=138 Identities=23% Similarity=0.296 Sum_probs=81.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
|+--++...+|+|||.-.+.-++..... .+.++|||.|||.++..+.+.++.. .+++.. .-.. . .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~~~~-~----~ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHT--NARM-R----T 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTTS----SEEEES--TTSS-------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhcC----CcccCc--eeee-c----c
Confidence 4456888999999998766555544443 3678999999999999988877643 222221 1110 0 1
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChH--HHHHHHHHhcCCCCcEEEEEecCChHHHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA--EQLHKILGQLSENRQTLLFSATLPSALAEF 216 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~--~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~ 216 (569)
...+.-|-|+|.+.+.+.+.+ .....++++||+||||-....... ..+... .. .....+|++|||+|.....|
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---SS
T ss_pred ccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCCCC
Confidence 234566889999998887765 455789999999999985433211 111111 11 23467999999999765433
No 160
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.18 E-value=1.4e-10 Score=117.98 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=94.1
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHH
Q 008345 49 IQRKTMPLIL-------------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 49 iQ~~~i~~il-------------~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
+|.+++..++ ..+.+++...+|+|||...+..+. .+...... .-..+||++|. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777776653 235699999999999987664443 33332211 11359999999 77889999999
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHH-----HHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-----HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~-----~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l 189 (569)
++.....+++..+.|+..............+++|+|++.+. ..... +.--++++||+||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 88765567776666665122222223357899999999998 22222 222348999999999995443 334
Q ss_pred HHHHHhcCCCCcEEEEEecC
Q 008345 190 HKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 190 ~~i~~~~~~~~q~ll~SAT~ 209 (569)
...+..+. ....+++||||
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccc-cceEEeecccc
Confidence 44445555 67789999997
No 161
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.18 E-value=1.8e-09 Score=110.66 Aligned_cols=109 Identities=13% Similarity=0.217 Sum_probs=89.4
Q ss_pred CcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceEE-EEeccccccCCCCCCCEEEEcCCC
Q 008345 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFL-IVTDVAARGIDIPLLDNVINWDFP 344 (569)
Q Consensus 267 ~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g-~~~IL-V~Tdv~arGlDip~v~~VI~~d~p 344 (569)
-+.|||..-....+.+.-.|.+.|+.++-+.|+|++.+|...++.|.+. .+.|+ ++-.+.+.-+|+....+|..+|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 3567776666666677777788899999999999999999999999875 56765 455777788999999999999998
Q ss_pred CChhHHHHHhhccccCCCc--cEEEEEeccccH
Q 008345 345 PKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (569)
Q Consensus 345 ~s~~~~~qrvGR~gR~g~~--G~~i~~v~~~e~ 375 (569)
++|..-.|...|..|.|+. -.++.|+.++.+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 9999999999999998864 567778777643
No 162
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.17 E-value=1.8e-09 Score=114.60 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=94.9
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce-EEEEeccccccCCCCCCCEEEEcCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-FLIVTDVAARGIDIPLLDNVINWDF 343 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~-ILV~Tdv~arGlDip~v~~VI~~d~ 343 (569)
.+.++|+|+.-.+..+.+.++|.-.++....+.|...-.+|..++..|...++- .|++|.+.+-|||+...+.||.||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 466778888777888888899988999999999999999999999999986654 4789999999999999999999999
Q ss_pred CCChhHHHHHhhccccCCCcc--EEEEEeccc
Q 008345 344 PPKPKIFVHRVGRAARAGRTG--TAFSFVTSE 373 (569)
Q Consensus 344 p~s~~~~~qrvGR~gR~g~~G--~~i~~v~~~ 373 (569)
-++|..-.|.+.|+.|-|++. ++|-+++..
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999864 456666554
No 163
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.13 E-value=3.1e-09 Score=124.25 Aligned_cols=125 Identities=21% Similarity=0.331 Sum_probs=107.0
Q ss_pred hHHHHHHHHH-HHhcCCCC--cEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC--CceEEEEec
Q 008345 250 EKHAALLYMI-REHISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR--KTMFLIVTD 324 (569)
Q Consensus 250 ~k~~~L~~ll-~~~~~~~~--~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g--~~~ILV~Td 324 (569)
.|...+..++ ......+. +++||+......+-+...|...++....++|+++...|...++.|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666777 55556677 999999999999999999999998899999999999999999999986 344567788
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEE--EEEecccc
Q 008345 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (569)
Q Consensus 325 v~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~~e 374 (569)
+...|+|+-..++||.||..+++....|...|+.|.|++..+ +.+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 999999999999999999999999999999999999987544 55666554
No 164
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.12 E-value=1.3e-08 Score=113.03 Aligned_cols=116 Identities=20% Similarity=0.342 Sum_probs=96.3
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc--eEEEEeccccccCCCCCCC
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT--MFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~--~ILV~Tdv~arGlDip~v~ 336 (569)
|++....+.++|||..-....+-+..+|.-.|+....++|...-++|...+++|..+.. -.+++|.....|||+.+.|
T Consensus 1269 LqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1269 LQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred HHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 33333468899999999999999999999999999999999999999999999987642 3466999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCc--cEEEEEecccc
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSED 374 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~--G~~i~~v~~~e 374 (569)
.||+||.-+++..--|.--|+.|.|+. -..|-|++..-
T Consensus 1349 TVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1349 TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred eEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 999999999887766766777776665 45577888754
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.11 E-value=1.3e-09 Score=110.17 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCCCChHHHHHHH----HHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 42 g~~~~t~iQ~~~i----~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.|. |+|.|.+.+ ..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 566 799999954 4555688999999999999999999998776643221 2347999999999999887766654
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.11 E-value=1.3e-09 Score=110.17 Aligned_cols=74 Identities=27% Similarity=0.331 Sum_probs=58.2
Q ss_pred CCCCChHHHHHHH----HHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 42 g~~~~t~iQ~~~i----~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.|. |+|.|.+.+ ..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 566 799999954 4555688999999999999999999998776643221 2347999999999999887766654
No 167
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.02 E-value=1.2e-08 Score=108.78 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHhc-CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc--CCceEEE-Ee
Q 008345 248 QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLI-VT 323 (569)
Q Consensus 248 ~~~k~~~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~--g~~~ILV-~T 323 (569)
..-|...++..+...+ ..+++++|...=.....-+...+.+.|.....+||.....+|..+++.|.. |..+|++ .-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 3446666666666553 344455444332233344556777889999999999999999999999974 5566655 55
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEE
Q 008345 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367 (569)
Q Consensus 324 dv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i 367 (569)
...+.|+|+-+.+|+|..|+-++|..=-|...|.-|.|++..++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 77789999999999999999999999999999999999976553
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.81 E-value=9.5e-08 Score=94.44 Aligned_cols=132 Identities=19% Similarity=0.280 Sum_probs=98.0
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
..|+. |++.|.-++=.+..|+ ++...||-|||++..+|+.-... .|..|-|++....||..=++++..+-+.
T Consensus 73 ~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 73 TLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----QGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----TSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----hcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 35776 9999998886666665 99999999999988888765544 3678999999999999999999999899
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcCC----C-CCCCeeEEEEeCCCccC
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED----M-SLKSVEYVVFDEADCLF 181 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~~----~-~l~~l~~iViDEah~l~ 181 (569)
.|+.++.+.++.+.++..... .+||+.+|.+.+ ++++...-. . ....+.++|+||+|.++
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999988766544443 368999999887 445544111 1 14678899999999876
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.71 E-value=2.8e-07 Score=100.71 Aligned_cols=309 Identities=17% Similarity=0.193 Sum_probs=174.4
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeEEEEEcCCC
Q 008345 54 MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDS 132 (569)
Q Consensus 54 i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~~~~gg~~ 132 (569)
+..+..++-+++.+.||.|||.-|.--+++.+.+.....-..+.+--|+|--+.-+.+ ++++-+...+-.++.-+--++
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~S 466 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDS 466 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccc
Confidence 3444455668899999999999988888888877655444456777799887777665 333322221111111000000
Q ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 133 ~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
..-...-.|..+|-|-+++.+.. -+.-+.++|+||.|.-.-. .|...+.+=+....+....+++|||+..
T Consensus 467 -----a~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 467 -----ATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred -----cccccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 00012345889999999988765 2566788999999975432 2443333333333333444555555422
Q ss_pred H--------------------HHHHHHhcCCCCeeeeecccc-------------ccCC------Cc----------eEE
Q 008345 212 A--------------------LAEFAKAGLRDPHLVRLDVDT-------------KISP------DL----------KLA 242 (569)
Q Consensus 212 ~--------------------~~~~~~~~l~~~~~i~~~~~~-------------~~~~------~~----------~~~ 242 (569)
. +..|....+..+.. .+..+. ...+ +. ...
T Consensus 538 d~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~-~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~a 616 (1282)
T KOG0921|consen 538 DLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQ-FVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTA 616 (1282)
T ss_pred hhhhhhhccccceeeccccccHHHHHHHHhhhhhh-ccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhh
Confidence 1 11222211111100 000000 0000 00 000
Q ss_pred EEEcchhhHHHHHHHHHHHhc---CCCCcEEEEEcChhhHHHHHHHHHHC-------CCCceeecCCCCHHHHHHHHHHH
Q 008345 243 FFTLRQEEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRF 312 (569)
Q Consensus 243 ~~~~~~~~k~~~L~~ll~~~~---~~~~~~IIF~~t~~~~~~l~~~L~~~-------~~~~~~i~g~l~~~~R~~~l~~F 312 (569)
.......+..-.|.+.+...+ .-.+-++||.+--...-.|...|... .+.+...|+.+......++.+..
T Consensus 617 m~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~ 696 (1282)
T KOG0921|consen 617 MSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV 696 (1282)
T ss_pred hhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc
Confidence 000000011112222222211 12456889998888777776666432 35677788888777777777777
Q ss_pred hcCCceEEEEeccccccCCCCCCCEEEEcCCC------------------CChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFP------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 313 ~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p------------------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
..|..+++++|.++...+.+-++..||..+.- .+....+||.||+||. ++|.|..+++.-
T Consensus 697 p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 697 PEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred cccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 78999999999999999999888877744421 2344569999999996 678887776543
No 170
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.69 E-value=1.5e-06 Score=95.64 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----------------------CCCCceeecCCCCHHHHHHHH
Q 008345 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIHV 309 (569)
Q Consensus 252 ~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----------------------~~~~~~~i~g~l~~~~R~~~l 309 (569)
.-.|+.+|+..-.-+.+.|||..+....+.+..+|.. .|.....|.|......|....
T Consensus 1128 miLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~ 1207 (1567)
T KOG1015|consen 1128 MILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWA 1207 (1567)
T ss_pred eehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHH
Confidence 3356666666556688999999999888888888763 234567889999999999999
Q ss_pred HHHhcC-C---ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEE--EEEecc
Q 008345 310 SRFRAR-K---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTS 372 (569)
Q Consensus 310 ~~F~~g-~---~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~ 372 (569)
+.|.+- . .-.||+|.+.+-|+|+-..+-||.||..|+|.--.|-+=|+-|+|+..-+ |-|+..
T Consensus 1208 ~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1208 EEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 999863 1 23699999999999999999999999999999889999999999987555 444443
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.52 E-value=1.9e-08 Score=111.65 Aligned_cols=259 Identities=19% Similarity=0.195 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCe
Q 008345 45 VPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~ 123 (569)
...|+|.+.+..... ..++++-+|||||||.+|-+.++..+... ++.++++++|-.+|+....+..+.--...|++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCCce
Confidence 455677766644322 46799999999999999999998877665 56789999999999988666444322334889
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCChHHHHH-------HHHHh
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-------KILGQ 195 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~f~~~l~-------~i~~~ 195 (569)
+.-+.|....+.. -...++++|+||++...+...++.. -+.++..+|+||.|.+.+.. ..-+. .+-..
T Consensus 1004 ~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~r-gPVle~ivsr~n~~s~~ 1079 (1230)
T KOG0952|consen 1004 VIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDR-GPVLEVIVSRMNYISSQ 1079 (1230)
T ss_pred eEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCCC-cceEEEEeeccccCccc
Confidence 9999988766522 1246899999999999888754432 36789999999999877641 11111 12222
Q ss_pred cCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccccc------CCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 008345 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI------SPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (569)
Q Consensus 196 ~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 269 (569)
.++..+.+++|--+ ....+++...-..+. +........ -....-.+++.+...........++. .++..++
T Consensus 1080 t~~~vr~~glsta~-~na~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~-~sp~~p~ 1156 (1230)
T KOG0952|consen 1080 TEEPVRYLGLSTAL-ANANDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKT-HSPIKPV 1156 (1230)
T ss_pred cCcchhhhhHhhhh-hccHHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhc-CCCCCce
Confidence 33444555554433 222333332211111 111100000 00111112222223334444555554 4678899
Q ss_pred EEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcC
Q 008345 270 LIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRAR 315 (569)
Q Consensus 270 IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g 315 (569)
|||++++++..+-+.-|-. ..-+...++ ++..+-+.++..-+..
T Consensus 1157 lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~ 1204 (1230)
T KOG0952|consen 1157 LIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDT 1204 (1230)
T ss_pred EEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhccc
Confidence 9999998876655443322 111222333 4444555555554443
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.50 E-value=1.1e-06 Score=99.83 Aligned_cols=143 Identities=20% Similarity=0.317 Sum_probs=87.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-----H-hcc-c--CCCeEEEEEcCC-
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-----E-LGR-Y--TDLRISLLVGGD- 131 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~-----~-~~~-~--~~l~~~~~~gg~- 131 (569)
++.+..+||+|||.+|+-.|++..... .-.+.||+||+.+.-..+.+.+. . |.. + ..+..-.+-++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~ 137 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDK 137 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcc
Confidence 688999999999999998887665543 23569999999999998887765 1 211 1 123333343332
Q ss_pred ------CHHHHHHHHc-C------CCCEEEECcHHHHHHHh-hc---------CCCCCCCe----eEEEEeCCCccCCCC
Q 008345 132 ------SMESQFEELA-Q------NPDIIIATPGRLMHHLS-EV---------EDMSLKSV----EYVVFDEADCLFGMG 184 (569)
Q Consensus 132 ------~~~~~~~~l~-~------~~~IiV~Tp~rl~~~l~-~~---------~~~~l~~l----~~iViDEah~l~~~~ 184 (569)
+.....+... . ...|+|+|-+.|..-.. +. ...++..+ -+||+||.|++...+
T Consensus 138 ~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~ 217 (986)
T PRK15483 138 KKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN 217 (986)
T ss_pred cccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch
Confidence 2222222221 1 46899999988753211 00 00122111 269999999986532
Q ss_pred hHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 185 FAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 185 f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
..+..| ..+.+.+ ++.||||.+.
T Consensus 218 --k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 --KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred --HHHHHH-HhcCccc-EEEEeeecCC
Confidence 233444 4554433 6889999986
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.37 E-value=8.8e-07 Score=86.32 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhh----cCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQ----HVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~----~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
++++.|.+|+..++.... .++.||+|+|||.+.. -++..+.. .....+.++|+++|+..-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999998 9999999999996433 33334411 1123577899999999999998876665
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.30 E-value=2.2e-05 Score=89.27 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCCCEEEECcHHHH-HHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 142 QNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 142 ~~~~IiV~Tp~rl~-~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
....|+++||.-|. |++. +.+++..+..|||||||++.+..-..-+.++++.-.+..-+.+|||.|.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~--~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT--GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhc--CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34679999998875 4554 4689999999999999999887666667777777666777999999974
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.21 E-value=8.8e-05 Score=81.78 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccC--CCcc-----------EEEEEeccccHHHHHHH
Q 008345 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--GRTG-----------TAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 315 g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~--g~~G-----------~~i~~v~~~e~~~~~~l 381 (569)
...+.+++-.++-+|+|-|+|=.+.-.....|...=.|-|||.-|. .+.| .-.+++...+..++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999888888888889999999994 1222 22445566677777666
Q ss_pred HHHhCC
Q 008345 382 HLFLSK 387 (569)
Q Consensus 382 ~~~l~~ 387 (569)
...+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 555543
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.19 E-value=1e-05 Score=77.20 Aligned_cols=124 Identities=21% Similarity=0.281 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~--dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (569)
++++-|++++..++... -+++.|+.|+|||.+. -.+...+.. .|.++++++||...+..+.+.. ++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 47899999999997654 3778899999999853 334444444 3688999999998887755431 11
Q ss_pred eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC---CCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC-
Q 008345 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~---~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~- 198 (569)
. ..|-.+++....... ...+...++||||||-.+. ...+..++...+.
T Consensus 69 ~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 E------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred c------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 1 223222222111100 0114566799999998755 3567777777766
Q ss_pred CCcEEEEEec
Q 008345 199 NRQTLLFSAT 208 (569)
Q Consensus 199 ~~q~ll~SAT 208 (569)
+.+++++-=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 5555555443
No 177
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.12 E-value=0.00048 Score=77.23 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
..+++.|..|+..++.. ..+++.||+|+|||.+..- ++..+.. .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~-ii~~~~~----~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVE-LIRQLVK----RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHH-HHHHHHH----cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998886 5688999999999976543 3333333 366899999999988888776665
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.12 E-value=5.9e-06 Score=78.57 Aligned_cols=146 Identities=21% Similarity=0.313 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH----HHHHHhccc
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL----KFTKELGRY 119 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~----~~~~~~~~~ 119 (569)
...|+.|..++..++..+-+++.||.|||||+..+..+++.+... .-.+++|.-|..+....+- +.-+++..+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--TT----SS---------TT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 456899999999999888899999999999999998888887763 3346888888765311100 000000000
Q ss_pred CC-C--eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc
Q 008345 120 TD-L--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (569)
Q Consensus 120 ~~-l--~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~ 196 (569)
.. + ....+.+....+ .+.....|-+.++..+. ...+++ .+||+|||+.+. ..++..++.++
T Consensus 80 ~~p~~d~l~~~~~~~~~~----~~~~~~~Ie~~~~~~iR-------Grt~~~-~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 80 LRPIYDALEELFGKEKLE----ELIQNGKIEIEPLAFIR-------GRTFDN-AFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp THHHHHHHTTTS-TTCHH----HHHHTTSEEEEEGGGGT-------T--B-S-EEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHhChHhHH----HHhhcCeEEEEehhhhc-------Cccccc-eEEEEecccCCC----HHHHHHHHccc
Confidence 00 0 000000222222 22234556666644322 234443 799999999854 57888999999
Q ss_pred CCCCcEEEEEec
Q 008345 197 SENRQTLLFSAT 208 (569)
Q Consensus 197 ~~~~q~ll~SAT 208 (569)
..+++++++.-.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 988887775443
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.01 E-value=1.8e-05 Score=73.38 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHCCC--CceeecCCCCHHHHHHHHHHHhcCCceEEEEec--cccccCCCCC--CCEE
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNV 338 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~~~--~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td--v~arGlDip~--v~~V 338 (569)
.++.+|||++|....+.+...+..... ....+.. +...+...++.|++++-.||+++. ..++|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 358999999999999999998876532 1122222 345677889999999999999998 9999999996 6779
Q ss_pred EEcCCCC----Chh--------------------------HHHHHhhccccCCCccEEEEEecc
Q 008345 339 INWDFPP----KPK--------------------------IFVHRVGRAARAGRTGTAFSFVTS 372 (569)
Q Consensus 339 I~~d~p~----s~~--------------------------~~~qrvGR~gR~g~~G~~i~~v~~ 372 (569)
|...+|. ++. ...|.+||+-|...+--++.++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888873 111 138899999998665334444444
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.97 E-value=0.00013 Score=71.38 Aligned_cols=143 Identities=19% Similarity=0.159 Sum_probs=84.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH-----------HHHH
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL-----------ALQT 109 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL-----------a~Q~ 109 (569)
.++...+..|...+..+..+.-+++.|++|+|||+..+...++.+... .-.+++|.-|+.+. ..-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 456678899999999988888899999999999998877777665442 12345666565432 1111
Q ss_pred HHHHHHhcccCCCeEEEEEcCCCHHHHHHHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHH
Q 008345 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (569)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~ 188 (569)
.-++..+-..... +.|....+. .+ .....|-|... .++. ..++.+ ++||+|||+.+. ..+
T Consensus 132 ~p~~~pi~D~L~~----~~~~~~~~~---~~~~~~~~Iei~~l----~ymR---Grtl~~-~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGASFMQY---CLRPEIGKVEIAPF----AYMR---GRTFEN-AVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHH----HhChHHHHH---HHHhccCcEEEecH----HHhc---CCcccC-CEEEEechhcCC----HHH
Confidence 1122111100000 011111111 11 12234555542 2332 244444 799999999865 377
Q ss_pred HHHHHHhcCCCCcEEEE
Q 008345 189 LHKILGQLSENRQTLLF 205 (569)
Q Consensus 189 l~~i~~~~~~~~q~ll~ 205 (569)
+..++.+++.+.++++.
T Consensus 193 ~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 193 MKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHhhcCCCCEEEEe
Confidence 88889999988876663
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.95 E-value=2.8e-05 Score=81.22 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=67.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (569)
-+++.|.+|||||++.+-. +..+. ....+..++++++...|...+...+..-. . .
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~--~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQ--NSEEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------P 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhh--ccccCCceEEEEecchHHHHHHHHHhhhc----------c------------c
Confidence 3789999999999876522 22331 12346779999999999988777665432 0 0
Q ss_pred CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-------hHHHHHHHHHh
Q 008345 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-------FAEQLHKILGQ 195 (569)
Q Consensus 142 ~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-------f~~~l~~i~~~ 195 (569)
......+..+..+...... .......+++|||||||++...+ ...++..++..
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0011223444444433321 12456789999999999998731 24566666665
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.87 E-value=0.0005 Score=73.95 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=63.0
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 39 ~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
..-|+..++.-|..|+.++|...-.+++||+|+|||.+..- ++.++..+ .+.++|+++|+.--+.|+++.+.+.
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~---~~~~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---HAGPVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh---cCCceEEEcccchhHHHHHHHHHhc--
Confidence 34577789999999999999999999999999999986543 33344443 2445999999998888888776654
Q ss_pred cCCCeEEEEE
Q 008345 119 YTDLRISLLV 128 (569)
Q Consensus 119 ~~~l~~~~~~ 128 (569)
|+++..+.
T Consensus 478 --gLKVvRl~ 485 (935)
T KOG1802|consen 478 --GLKVVRLC 485 (935)
T ss_pred --CceEeeee
Confidence 36666554
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=8.3e-05 Score=59.19 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=41.2
Q ss_pred HHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 008345 53 TMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (569)
Q Consensus 53 ~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (569)
++...+.+.. +++.|++|||||...+--+.+.+...... +.++++++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443334444 56699999999976654444444323333 778999999999999887766
No 184
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.82 E-value=0.0021 Score=70.22 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=85.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHCCCC------------------ceeecCCCCHHHHHHHHHHHhcC-C--ceEEEEec
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREEGLE------------------PSVCYGDMDQDARKIHVSRFRAR-K--TMFLIVTD 324 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~~~~------------------~~~i~g~l~~~~R~~~l~~F~~g-~--~~ILV~Td 324 (569)
+.++|||.........+.+.|.+..+. ...+.|..+...|++.+.+|... . .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 567889998888888888888764332 22466788888999999999752 2 25788999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEE--EEeccc
Q 008345 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF--SFVTSE 373 (569)
Q Consensus 325 v~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i--~~v~~~ 373 (569)
...-|+|+-..+-+|.+|..+++-.-.|.+-|+-|.|+..-|+ -++...
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 9999999998888999999999988899999999999876554 445443
No 185
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.80 E-value=0.00016 Score=72.05 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=101.5
Q ss_pred CChHHHHHHHHHHh-------c---CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLIL-------S---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 45 ~~t~iQ~~~i~~il-------~---g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.++..|-+++-..- . +.-+++--.||.||--...--+++.+... .+++|+++.+-.|-......++
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCceEEEECChhhhhHHHHHHH
Confidence 46888988875442 1 24588888999999876555566666543 3569999999999999888888
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC-----------CCCCCeeEEEEeCCCccCCC
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----------MSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~-----------~~l~~l~~iViDEah~l~~~ 183 (569)
.++.. .+.+..+..-.. . ....-...|+.+|+..|...-..... +.-+.=++|||||||..-+.
T Consensus 113 DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 113 DIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 88744 333322221100 0 00122456999999888655321000 00112358999999998765
Q ss_pred Ch--------HHHHHHHHHhcCCCCcEEEEEecCChHH
Q 008345 184 GF--------AEQLHKILGQLSENRQTLLFSATLPSAL 213 (569)
Q Consensus 184 ~f--------~~~l~~i~~~~~~~~q~ll~SAT~~~~~ 213 (569)
.- ......+...+|..+ ++.+|||--.+.
T Consensus 188 ~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep 224 (303)
T PF13872_consen 188 SSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEP 224 (303)
T ss_pred CccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCC
Confidence 32 235556677787555 999999965443
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.79 E-value=0.00045 Score=66.47 Aligned_cols=153 Identities=22% Similarity=0.332 Sum_probs=95.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~---g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
+|+.+..+.+++=.+. .++. ++|.|.+....+.+ |.+.+.+.-+|.|||.+ ++|++..+... ...-+.+++
T Consensus 4 ~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~LvrviV 77 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVIV 77 (229)
T ss_pred CCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEEc
Confidence 5667777777776554 3444 99999999988776 57899999999999987 56877666543 223455666
Q ss_pred CcHHHHHHHHHHHHH-hcccCCCeEEEE--EcCCCH--------HHHHHHHcCCCCEEEECcHHHHHHHhhc------CC
Q 008345 101 PTRDLALQTLKFTKE-LGRYTDLRISLL--VGGDSM--------ESQFEELAQNPDIIIATPGRLMHHLSEV------ED 163 (569)
Q Consensus 101 PtreLa~Q~~~~~~~-~~~~~~l~~~~~--~gg~~~--------~~~~~~l~~~~~IiV~Tp~rl~~~l~~~------~~ 163 (569)
| ++|..|+.+.+.. ++.-.+-++..+ .-.... ....+.......|+++||+.++.+.... +.
T Consensus 78 p-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~ 156 (229)
T PF12340_consen 78 P-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGK 156 (229)
T ss_pred C-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcC
Confidence 6 4789999987765 543333333222 222221 1112233456779999999876533210 00
Q ss_pred CC-----------CCCeeEEEEeCCCccCCC
Q 008345 164 MS-----------LKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 164 ~~-----------l~~l~~iViDEah~l~~~ 183 (569)
.. +....-=|+||+|.++..
T Consensus 157 ~~~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 157 PEEARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 00 223344688999887753
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.72 E-value=0.0004 Score=79.02 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=80.5
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 39 ~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
...|+. +++.|++++..+..++-+++.|.+|+|||.+.- .++..+... .....+++++||-.-|..+.+.
T Consensus 318 ~~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e~------ 387 (720)
T TIGR01448 318 KKLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEEL--GGLLPVGLAAPTGRAAKRLGEV------ 387 (720)
T ss_pred HhcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCceEEEEeCchHHHHHHHHh------
Confidence 335654 999999999999988889999999999997532 333333321 0115688899998776643322
Q ss_pred cCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC
Q 008345 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (569)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~ 198 (569)
++... .+..... ... ++..... . .-.....++||+|||+.+.. ..+..++..++.
T Consensus 388 -~g~~a------~Tih~lL---~~~-------~~~~~~~-~---~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~ 442 (720)
T TIGR01448 388 -TGLTA------STIHRLL---GYG-------PDTFRHN-H---LEDPIDCDLLIVDESSMMDT----WLALSLLAALPD 442 (720)
T ss_pred -cCCcc------ccHHHHh---hcc-------CCccchh-h---hhccccCCEEEEeccccCCH----HHHHHHHHhCCC
Confidence 12211 1111111 000 0000000 0 00123468999999998753 445677778888
Q ss_pred CCcEEEEEec
Q 008345 199 NRQTLLFSAT 208 (569)
Q Consensus 199 ~~q~ll~SAT 208 (569)
..+++++.=+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888876544
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.64 E-value=0.00082 Score=74.70 Aligned_cols=144 Identities=17% Similarity=0.154 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (569)
..++|+.|+-..+.++-+++.|++|+|||.+.. -++..+.......+.++++.+||..-|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 358999999999999999999999999997632 22223322211234678999999988887776554432221110
Q ss_pred EEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcC-----CCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~-----~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
+. .......-..|-.+++....... .-+.-.+++||+||+-.+. ...+..+++.+++.+
T Consensus 230 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 --------DE----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred --------hh----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 00 00011111234333332211100 0112346899999997643 456677888899988
Q ss_pred cEEEEEec
Q 008345 201 QTLLFSAT 208 (569)
Q Consensus 201 q~ll~SAT 208 (569)
++|++.=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88876544
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.63 E-value=0.00013 Score=77.98 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
.+.+-|+.|+......++ .++.||+|+|||.....-+. ++.. .+.++||+.||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~-qlvk----~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIIS-QLVK----QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHH-HHHH----cCCeEEEEcCchHHHHHHHHH
Confidence 578889999998888765 77899999999987654444 4333 368899999999988877774
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.59 E-value=0.00097 Score=73.90 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEE
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (569)
.+.|+.++..++.++-+++.|+.|+|||.+.. .++..+...... .+.++++.+||---|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 38999999999999999999999999998533 233333221111 12579999999887777666554432111110
Q ss_pred EEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhc-----CCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~-----~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
... .....+-..|-.+++...... ..-+...+++||||||=.+. ...+..+++.++...
T Consensus 224 --------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 000 001112234434443221100 00122357899999996544 345677788888888
Q ss_pred cEEEEEec
Q 008345 201 QTLLFSAT 208 (569)
Q Consensus 201 q~ll~SAT 208 (569)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 87776543
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.49 E-value=0.00075 Score=74.99 Aligned_cols=136 Identities=24% Similarity=0.347 Sum_probs=85.6
Q ss_pred CCCCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHH---Hhhh---------cC-------C--------
Q 008345 42 GYKVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQ---RLNQ---------HV-------P-------- 90 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~---~l~~---------~~-------~-------- 90 (569)
.|. |+|.|...+..++. ..+.++..|||+|||++.+-..+. .+.. .. .
T Consensus 19 P~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 19 PFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred cCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 444 89999988877765 578999999999999877644432 2220 00 0
Q ss_pred ----CC------CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCC-----------------------------
Q 008345 91 ----QG------GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD----------------------------- 131 (569)
Q Consensus 91 ----~~------g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~----------------------------- 131 (569)
.+ -+++.+-+-|..-..|+.+++++.+.. ++.+++-.-+
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~ 175 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRS 175 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccc
Confidence 01 245677777877778888877765533 2222221100
Q ss_pred ---------------------CHHHHH--------------HHHcCCCCEEEECcHHHHHHHhhcC-CCCCCCeeEEEEe
Q 008345 132 ---------------------SMESQF--------------EELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFD 175 (569)
Q Consensus 132 ---------------------~~~~~~--------------~~l~~~~~IiV~Tp~rl~~~l~~~~-~~~l~~l~~iViD 175 (569)
.+++.. +.+...+|||+|.+.-|++-..+.. .+++.+ .+||||
T Consensus 176 C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfD 254 (945)
T KOG1132|consen 176 CHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFD 254 (945)
T ss_pred ccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEe
Confidence 001100 4455678999999999988665522 245544 589999
Q ss_pred CCCccC
Q 008345 176 EADCLF 181 (569)
Q Consensus 176 Eah~l~ 181 (569)
|||.+-
T Consensus 255 EAHNiE 260 (945)
T KOG1132|consen 255 EAHNIE 260 (945)
T ss_pred ccccHH
Confidence 999764
No 192
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.48 E-value=0.0019 Score=75.15 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=78.3
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 39 KRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 39 ~~~g~~~~t~iQ~~~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
...|+. +++-|++++..++.+++ +++.|..|+|||.+ +-.+.+.+.. .|.+++.++||---|..+.
T Consensus 341 ~~~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~------- 407 (988)
T PRK13889 341 EARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLE------- 407 (988)
T ss_pred HhcCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHh-------
Confidence 345665 99999999999998765 78999999999985 3334433333 4778999999976554332
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc-
Q 008345 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL- 196 (569)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~- 196 (569)
...|+.. .|-.+|+.-... ....+...++|||||+-.+.. ..+..++...
T Consensus 408 e~tGi~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~ 458 (988)
T PRK13889 408 GGSGIAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAA 458 (988)
T ss_pred hccCcch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCH----HHHHHHHHhhh
Confidence 1222211 111222211111 122355678999999986543 3445555543
Q ss_pred CCCCcEEEEEec
Q 008345 197 SENRQTLLFSAT 208 (569)
Q Consensus 197 ~~~~q~ll~SAT 208 (569)
+.+.++||+.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 456777766544
No 193
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.32 E-value=0.02 Score=71.99 Aligned_cols=211 Identities=13% Similarity=0.146 Sum_probs=119.1
Q ss_pred CCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 42 GYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
+| .+++-|++++..++.. +-.++.|+.|+|||.+.- .+++.+.. .|.++++++||-.-+.++.+...
T Consensus 427 ~~-~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 427 EF-ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE----QGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred cC-CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh----cCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 44 4899999999999886 448899999999997532 33333322 47889999999876655443221
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc-CC
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SE 198 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~-~~ 198 (569)
+.. .+...+...+.. . .-..|..+++ . +..++..-++||||||-.+. ...+..++... +.
T Consensus 496 --~~A------~Ti~~~l~~l~~-~-~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 496 --RLA------STFITWVKNLFN-D-DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred --chh------hhHHHHHHhhcc-c-ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 110 111112111111 1 1122333333 1 23456678899999998754 34566666655 46
Q ss_pred CCcEEEEEecC--C-----hHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEE
Q 008345 199 NRQTLLFSATL--P-----SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLI 271 (569)
Q Consensus 199 ~~q~ll~SAT~--~-----~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~II 271 (569)
+.+++|+.=+- | +.+..+...++ ..+++.........+ .+.......+...+...+.........++|
T Consensus 557 garvVlvGD~~QL~sV~aG~~f~~L~~~gv---~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tli 631 (1960)
T TIGR02760 557 NSKLILLNDSAQRQGMSAGSAIDLLKEGGV---TTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQV 631 (1960)
T ss_pred CCEEEEEcChhhcCccccchHHHHHHHCCC---cEEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEE
Confidence 78888776551 1 33444444332 222332211111111 222233345555666655555444557999
Q ss_pred EEcChhhHHHHHHHHH
Q 008345 272 FVSTKHHVEFLNVLFR 287 (569)
Q Consensus 272 F~~t~~~~~~l~~~L~ 287 (569)
+..|......|....+
T Consensus 632 v~~t~~dr~~Ln~~iR 647 (1960)
T TIGR02760 632 LATTHREQQDLTQIIR 647 (1960)
T ss_pred EcCCcHHHHHHHHHHH
Confidence 9999888877765554
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0077 Score=63.26 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=73.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (569)
+.+++.||||+|||.+..-.+. .+.......|.++.+++ +.|.-+.. +++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~-~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA-IYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------------
Confidence 4588999999999987652222 22211111244555444 33444433 356666555554321
Q ss_pred HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCCC-CcEEEEEecCCh-HHHH
Q 008345 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLPS-ALAE 215 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~~-~q~ll~SAT~~~-~~~~ 215 (569)
+.++..+...+.. +.+.++|+||++.+..... ....+..++...... ...+.+|||... .+.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 2234445444443 3568899999999876432 234666666655433 456889999753 3444
Q ss_pred HHHhc
Q 008345 216 FAKAG 220 (569)
Q Consensus 216 ~~~~~ 220 (569)
.++.+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 54544
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.31 E-value=0.0045 Score=70.85 Aligned_cols=135 Identities=17% Similarity=0.205 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
.++..+......++. +++-|+.++..++.+ +-+++.|++|+|||.+.- .+.+.+.. .|.++++++||---|..
T Consensus 338 ~~~~~~~~~l~~~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 444444444334554 999999999999875 557899999999997533 33333332 37789999999765554
Q ss_pred HHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHH
Q 008345 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (569)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~ 188 (569)
+.+ .+++... |-.+++..... ....+...++||+||+-.+... .
T Consensus 412 L~~-------~~g~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~~----~ 455 (744)
T TIGR02768 412 LQA-------ESGIESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGSR----Q 455 (744)
T ss_pred HHh-------ccCCcee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCHH----H
Confidence 322 2223211 11111111111 1223567889999999876533 3
Q ss_pred HHHHHHhc-CCCCcEEEEE
Q 008345 189 LHKILGQL-SENRQTLLFS 206 (569)
Q Consensus 189 l~~i~~~~-~~~~q~ll~S 206 (569)
+..++... +.+.++||+.
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 34445432 3456666655
No 196
>PRK08181 transposase; Validated
Probab=97.30 E-value=0.0057 Score=61.12 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=67.5
Q ss_pred ChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 46 PTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 46 ~t~iQ~~~i~----~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
+.+.|..++. .+-.++++++.||+|+|||-.... +...+.. .|..++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~----~g~~v~f~-~~~~L~~~l~~a~~~------ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE----NGWRVLFT-RTTDLVQKLQVARRE------ 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH----cCCceeee-eHHHHHHHHHHHHhC------
Confidence 4455555552 334678899999999999964432 2222222 35556554 445665554321100
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh-HHHHHHHHHhcCCCC
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLSENR 200 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f-~~~l~~i~~~~~~~~ 200 (569)
.+...++.. +.+++++||||.+......+ ...+.+++.......
T Consensus 156 ---------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ---------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ---------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 111222222 34578999999997654332 345666666554455
Q ss_pred cEEEEEecCChHHH
Q 008345 201 QTLLFSATLPSALA 214 (569)
Q Consensus 201 q~ll~SAT~~~~~~ 214 (569)
.+++.|-..+..+.
T Consensus 201 s~IiTSN~~~~~w~ 214 (269)
T PRK08181 201 SILITANQPFGEWN 214 (269)
T ss_pred CEEEEcCCCHHHHH
Confidence 66666666555433
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.30 E-value=0.0006 Score=69.56 Aligned_cols=104 Identities=23% Similarity=0.165 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEE
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~ 125 (569)
+|+-|.+++.. ...++++.|..|||||.+.+--+...+.... .+..++|++++|+..|..+...+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc--
Confidence 68999999987 6778999999999999987766665554432 234579999999999999988777743221100
Q ss_pred EEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHH
Q 008345 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHL 158 (569)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l 158 (569)
................+.|+|-..+...+
T Consensus 76 ----~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 76 ----SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp ----CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred ----ccccccccccccccchheeehhhhhhhhh
Confidence 00001111222234567888887775533
No 198
>PRK06526 transposase; Provisional
Probab=97.21 E-value=0.0013 Score=65.23 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=60.9
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHH
Q 008345 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (569)
Q Consensus 55 ~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~ 134 (569)
..+..+.++++.||+|+|||.....-.. .+.. .|.++++... .+|..++... . .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~-~a~~----~g~~v~f~t~-~~l~~~l~~~----~----------~------ 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGI-RACQ----AGHRVLFATA-AQWVARLAAA----H----------H------ 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHH-HHHH----CCCchhhhhH-HHHHHHHHHH----H----------h------
Confidence 3444578999999999999976543222 2222 3556655433 2333332110 0 0
Q ss_pred HHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCCCCcEEEEEecCChHH
Q 008345 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSAL 213 (569)
Q Consensus 135 ~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~~~q~ll~SAT~~~~~ 213 (569)
.++..+.+ .. +.+++++||||+|...... -...+..++........+++.|..++...
T Consensus 147 -------------~~~~~~~l---~~-----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 147 -------------AGRLQAEL---VK-----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred -------------cCcHHHHH---HH-----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 01111122 11 3457899999999865322 23345566654434456777777766543
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.18 E-value=0.00058 Score=64.77 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=59.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
.-.++.|++|+|||.+.+ -++.++.. .|.+++++-|. +....+ +....++....
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~----~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~----------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEE----RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA----------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHH----cCCeEEEEeccccccccCCc-------EecCCCCcccc-----------
Confidence 346889999999997655 33333333 36788888773 222111 11111221110
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
+.+..+..+++.+.. .-.++++|||||+|.+. .+++.++++.+.+....+++++-
T Consensus 60 --------~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 --------IPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------eEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344455555433 23467899999997642 24456666664444445555554
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.12 E-value=0.004 Score=55.09 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++.+++.|++|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5779999999999997433
No 201
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.12 E-value=0.0018 Score=67.91 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=43.6
Q ss_pred CChHHHHHHHHHH------hcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 45 VPTPIQRKTMPLI------LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 45 ~~t~iQ~~~i~~i------l~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
++++-|+.++..+ .++..+++.|+-|+|||.++- .+.... ...+..+++++||--=|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~--~i~~~~---~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK--AIIDYL---RSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH--HHHHHh---ccccceEEEecchHHHHHhc
Confidence 4788999999888 567889999999999998533 222222 22467799999997655443
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.08 E-value=0.0018 Score=56.96 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++-+++.|++|+|||.+.-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998644
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=97.07 E-value=0.0047 Score=63.61 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (569)
-+++.|++|+|||.+..-.+ ..+.. .|.+++++... ..-..|+...... .++.+.....|.....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~~--- 209 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPAA--- 209 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHHH---
Confidence 47789999999998644222 23332 35566666532 2334454444443 3444332221111111
Q ss_pred HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH
Q 008345 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (569)
.+.+.+.. ......++|++|.+.++. +..+..++..+.+...+..-++.++||........+
T Consensus 210 --------------v~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 210 --------------VAYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred --------------HHHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 01222221 112356799999999986 344667788887777777778899999876655555
Q ss_pred Hhc
Q 008345 218 KAG 220 (569)
Q Consensus 218 ~~~ 220 (569)
+.+
T Consensus 273 ~~f 275 (336)
T PRK14974 273 REF 275 (336)
T ss_pred HHH
Confidence 544
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.02 E-value=0.0036 Score=70.45 Aligned_cols=137 Identities=22% Similarity=0.243 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 28 l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
..+.+.+.+. -+..++.-|++|+-.++..+| .++.|=+|+|||...... +..|.. .|+++|+.+=|..-+
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~----~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA----LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH----cCCeEEEEehhhHHH
Confidence 3455555543 245788999999999888776 788999999999864422 222322 478899999888766
Q ss_pred HHHHHHHHHhcccCCCeEEEEEcC---------------CCHHH--HHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 107 LQTLKFTKELGRYTDLRISLLVGG---------------DSMES--QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 107 ~Q~~~~~~~~~~~~~l~~~~~~gg---------------~~~~~--~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
..+.-.++.++ +.+..+-.+ .+.+. .....-+.+.||.+|--.+-+.+ +....+
T Consensus 727 DNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-----f~~R~F 797 (1100)
T KOG1805|consen 727 DNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-----FVNRQF 797 (1100)
T ss_pred HHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-----hhcccc
Confidence 66555555432 222222111 11111 11233357889999965555443 335568
Q ss_pred eEEEEeCCCccCC
Q 008345 170 EYVVFDEADCLFG 182 (569)
Q Consensus 170 ~~iViDEah~l~~ 182 (569)
+|+|+|||-.+..
T Consensus 798 D~cIiDEASQI~l 810 (1100)
T KOG1805|consen 798 DYCIIDEASQILL 810 (1100)
T ss_pred CEEEEcccccccc
Confidence 9999999987664
No 205
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.01 E-value=0.01 Score=69.59 Aligned_cols=138 Identities=13% Similarity=0.131 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 29 ~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
++++..+......++. +++-|++++..+.. ++-+++.|..|+|||.+.- ++.+.+.. .|.+++.++||---|.
T Consensus 366 ~v~~~~l~a~~~~~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 5666666666666665 99999999998865 4558899999999998533 34433333 4778999999966554
Q ss_pred HHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHH
Q 008345 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (569)
Q Consensus 108 Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~ 187 (569)
.+. ...|+.... -.+++..... +...+..-++|||||+-.+.. .
T Consensus 440 ~L~-------e~~Gi~a~T------------------------Ias~ll~~~~-~~~~l~~~~vlVIDEAsMv~~----~ 483 (1102)
T PRK13826 440 GLE-------KEAGIQSRT------------------------LSSWELRWNQ-GRDQLDNKTVFVLDEAGMVAS----R 483 (1102)
T ss_pred HHH-------HhhCCCeee------------------------HHHHHhhhcc-CccCCCCCcEEEEECcccCCH----H
Confidence 432 222333211 1111100000 123456677999999986543 4
Q ss_pred HHHHHHHhcC-CCCcEEEEEec
Q 008345 188 QLHKILGQLS-ENRQTLLFSAT 208 (569)
Q Consensus 188 ~l~~i~~~~~-~~~q~ll~SAT 208 (569)
++..++...+ .+.+++|+.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 4555666654 46777776544
No 206
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0041 Score=64.78 Aligned_cols=130 Identities=21% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCC-eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g-~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (569)
|..++++||||+|||......+...... .| .++.+++ +...-.--.+.++.|++..++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~----~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~------------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR----FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH------------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceE-------------
Confidence 4568899999999998765333222211 12 3444433 222111112345555544444333
Q ss_pred HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCCCCcEEEEEecCChH-HHHH
Q 008345 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSA-LAEF 216 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~~~q~ll~SAT~~~~-~~~~ 216 (569)
.+.+++.+...+.+ +.+.++|+||++-+..... ..+++..+.........++++|||.... +.+.
T Consensus 199 --------~~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 199 --------AVKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred --------ecCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 23344444444433 3456889999997654222 2233333322222234578889997443 3444
Q ss_pred HHhc
Q 008345 217 AKAG 220 (569)
Q Consensus 217 ~~~~ 220 (569)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4544
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.97 E-value=0.0029 Score=55.46 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+..+++.||+|+|||.... .+.......+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~-----~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR-----ALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHH-----HHHhccCCCCCCEEEECCEEccc
Confidence 4568999999999998654 23222222223477777765443
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.90 E-value=0.039 Score=58.96 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
++.+++.||||+|||.+..-.+....... .|.++.++. |.|.-+. ..++.++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPV------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHH---HHHHHHHHHhCCce-------------
Confidence 45688999999999986553222221011 244555554 2332221 33444443333332
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhc-CCCCcEEEEEecCCh-HHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQL-SENRQTLLFSATLPS-ALA 214 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~-~~~ 214 (569)
.++.++..+...+.. +.+.++|+||.+-+... ......+..++... .+....+++|||... .+.
T Consensus 282 --------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 --------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred --------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 223344555555543 33578999999866432 22345566666622 223457889998754 445
Q ss_pred HHHHhc
Q 008345 215 EFAKAG 220 (569)
Q Consensus 215 ~~~~~~ 220 (569)
..+..+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 555443
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0019 Score=61.51 Aligned_cols=127 Identities=22% Similarity=0.214 Sum_probs=68.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~-P-treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+++.||||+|||....=.+ .++... +.++.+++ - .|.=|. ++++.|++..++.+............
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~~----~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~~~~~---- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKLK----GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESDPAEI---- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHHT----T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSCHHHH----
T ss_pred EEEECCCCCchHhHHHHHH-HHHhhc----cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchhhHHH----
Confidence 6789999999998755222 222222 44455554 2 332222 34555555555554433222211111
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (569)
+.+.+.. +..++.++|+||-+-+... .....++..++....+..-.+.+|||........+
T Consensus 72 -------------~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 72 -------------AREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp -------------HHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred -------------HHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 1122222 2234577899998876543 23456777777777666678899999866544333
No 210
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.79 E-value=0.0038 Score=61.30 Aligned_cols=86 Identities=23% Similarity=0.340 Sum_probs=64.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCC-CHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~-~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
..+.+|||+.+---|..+.+.++.|. ..+..++-+..-- ..+++...+. ....|.||||+|+..+++. +.+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccC
Confidence 45789999998777777777777663 1123444444443 6677887777 4789999999999999976 78999999
Q ss_pred eEEEEeCCCc
Q 008345 170 EYVVFDEADC 179 (569)
Q Consensus 170 ~~iViDEah~ 179 (569)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998663
No 211
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.72 E-value=0.014 Score=52.45 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=36.8
Q ss_pred ecCCCCHHHHHHHHHHHhcCC-ceEEEEeccccccCCCCC--CCEEEEcCCC
Q 008345 296 CYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL--LDNVINWDFP 344 (569)
Q Consensus 296 i~g~l~~~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip~--v~~VI~~d~p 344 (569)
+.-+.+..+...+++.|++.. ..||++|.-.++|+|+|+ +..||...+|
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 333444545678889998754 379999988999999997 4678877766
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.72 E-value=0.019 Score=56.45 Aligned_cols=109 Identities=17% Similarity=0.271 Sum_probs=59.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||.... .+...+.. .|..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~----~g~~v~~i-t~~~l~~~l~~~~~~-------------~~---------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL----RGKSVLII-TVADIMSAMKDTFSN-------------SE---------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEE-EHHHHHHHHHHHHhh-------------cc----------
Confidence 468999999999997544 33334433 35666665 333443332221100 00
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHH-HHHHHHHhc-CCCCcEEEEEecCChHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE-QLHKILGQL-SENRQTLLFSATLPSALA 214 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~-~l~~i~~~~-~~~~q~ll~SAT~~~~~~ 214 (569)
.+...+++. +.+++++||||.+......+.. .+..|+..- .....+++.|---+..+.
T Consensus 151 --------~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 151 --------TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred --------ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 122233322 3467899999999876554443 455566543 335667776665544443
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.013 Score=61.06 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=70.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcH-HHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTR-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--Ptr-eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
+.+.+.||||+|||......+. .+.. .|.++.++. |.| .-+.| ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~----~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG----KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH----cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcE-------------
Confidence 4578999999999986553333 2322 355555544 333 23333 333332222222
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCC-hHHHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~-~~~~~ 215 (569)
+++.+|..+.+.+.... ...++++|+||-+=+.... .....+..++....+..-.+.+|||.. ..+..
T Consensus 300 --------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 22346666666664411 1125789999988775532 234555666655444444677898754 45566
Q ss_pred HHHhc
Q 008345 216 FAKAG 220 (569)
Q Consensus 216 ~~~~~ 220 (569)
.++.+
T Consensus 370 i~~~F 374 (436)
T PRK11889 370 IITNF 374 (436)
T ss_pred HHHHh
Confidence 66654
No 214
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.68 E-value=0.0068 Score=61.55 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=82.6
Q ss_pred CCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 41 KGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
.|.+.-+..|+-|+..++.- .-|.+.|+.|||||+.++...+++...... -.+++|-=|+..+.. .++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~--y~KiiVtRp~vpvG~-------dIG- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR--YRKIIVTRPTVPVGE-------DIG- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh--hceEEEecCCcCccc-------ccC-
Confidence 47777788899999998874 337789999999999888888877665422 235677667655431 111
Q ss_pred cCCCeEEEEEcC--CCHHHHHHHHcCCCCEEE----ECcHHHHHHHhhcCCCCCCC----------eeEEEEeCCCccCC
Q 008345 119 YTDLRISLLVGG--DSMESQFEELAQNPDIII----ATPGRLMHHLSEVEDMSLKS----------VEYVVFDEADCLFG 182 (569)
Q Consensus 119 ~~~l~~~~~~gg--~~~~~~~~~l~~~~~IiV----~Tp~rl~~~l~~~~~~~l~~----------l~~iViDEah~l~~ 182 (569)
.+-|. +.+..|...+..+-..+. ++.+.+-..+.. ..+.+.. =.+||||||+.+-
T Consensus 294 -------fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 294 -------FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred -------cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC-
Confidence 11111 111112211111111111 112222222221 2222111 1479999999865
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEE
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
..++..|+.+..++.+++++.
T Consensus 365 ---pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ---PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---HHHHHHHHHhccCCCEEEEcC
Confidence 467889999999888877743
No 215
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.55 E-value=0.047 Score=56.82 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
++-+.++||||-|||....=.+....... +...-+||-+-|--.+. .++++.|++.+++.+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~-------------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLE-------------- 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhH--HHHHHHHHHHhCCceE--------------
Confidence 56788999999999986542222222111 12334566666544332 2467777766666544
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCCh-HHHHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~~~ 217 (569)
++-+|.-|...+.. +.+.++|.+|=+-+-. +.....++.+.+....+---.+.+|||... .+.+..
T Consensus 265 -------vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 265 -------VVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred -------EecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 34445555544443 4556788888776543 223556777777766555567889999743 344444
Q ss_pred Hhc
Q 008345 218 KAG 220 (569)
Q Consensus 218 ~~~ 220 (569)
..+
T Consensus 333 ~~f 335 (407)
T COG1419 333 KQF 335 (407)
T ss_pred HHh
Confidence 443
No 216
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.51 E-value=0.016 Score=52.05 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCc---eEEEEecc--ccccCCCCC--CCEEEEcCCCCC----h-------------------------
Q 008345 304 ARKIHVSRFRARKT---MFLIVTDV--AARGIDIPL--LDNVINWDFPPK----P------------------------- 347 (569)
Q Consensus 304 ~R~~~l~~F~~g~~---~ILV~Tdv--~arGlDip~--v~~VI~~d~p~s----~------------------------- 347 (569)
....+++.|++... .||+++.- .++|+|+|+ ++.||...+|.. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 34677888887543 69998876 899999997 567887777731 1
Q ss_pred --hHHHHHhhccccCCCccEEEEEec
Q 008345 348 --KIFVHRVGRAARAGRTGTAFSFVT 371 (569)
Q Consensus 348 --~~~~qrvGR~gR~g~~G~~i~~v~ 371 (569)
....|.+||.-|...+--+++++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 113888999999865433444443
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.095 Score=56.81 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
|+-+.+.|+||+|||......+......+ .+.++.++. +.|.-+. .+++.++...++.+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~---~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~----------- 412 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH---APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE----------- 412 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCceEEEecccccccHH---HHHHHhhcccCceeEe-----------
Confidence 56688899999999986643332221111 133444443 2343222 2344444333332221
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCC-hHHHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~-~~~~~ 215 (569)
+.+++.+...+.. +.+.++|+||.+=+.... ....++..+.. .......++++++.. ..+.+
T Consensus 413 ----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~e 476 (559)
T PRK12727 413 ----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDE 476 (559)
T ss_pred ----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHH
Confidence 1233445555543 346789999999764321 12223333322 223455788888864 34444
Q ss_pred HHHh
Q 008345 216 FAKA 219 (569)
Q Consensus 216 ~~~~ 219 (569)
.++.
T Consensus 477 ii~~ 480 (559)
T PRK12727 477 VVRR 480 (559)
T ss_pred HHHH
Confidence 4443
No 218
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.39 E-value=0.028 Score=50.89 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCeeEEEEeCCCccCCCC----------hHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 167 KSVEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~----------f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
....++|+||.+.+.+.. ....+..+........-+++++...++
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 467899999999765331 235555666565544455555555443
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=96.24 E-value=0.029 Score=55.05 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=30.4
Q ss_pred CeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 168 ~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
+++++|+|+.|.+... .+...+..++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4578999999987543 4566688888777665445666666544
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=96.15 E-value=0.043 Score=60.26 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC-CC-e
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DL-R 123 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~-~l-~ 123 (569)
|.|+|...+..+..++-.++..+-..|||.+....++...... .+..+++++|+++-|..+++.++.+.... .+ +
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 8999999998876566566766777799987765554444322 35689999999999998888776543221 10 1
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCC--CCc
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQ 201 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~--~~q 201 (569)
........ ..-.+.++..|.+.|.+. ....-.+..++|+||+|.+.+ +.+.+..+...+.. ..+
T Consensus 137 ~~i~~~~~----~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r 202 (534)
T PHA02533 137 PGIVEWNK----GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSK 202 (534)
T ss_pred cceeecCc----cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCce
Confidence 00000000 001113455554444221 112234567899999998654 33333344333332 234
Q ss_pred EEEEEec
Q 008345 202 TLLFSAT 208 (569)
Q Consensus 202 ~ll~SAT 208 (569)
++.+|.+
T Consensus 203 ~iiiSTp 209 (534)
T PHA02533 203 IIITSTP 209 (534)
T ss_pred EEEEECC
Confidence 5555544
No 221
>PRK08727 hypothetical protein; Validated
Probab=96.15 E-value=0.022 Score=55.86 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=26.1
Q ss_pred CCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCC-CCcEEEEEecCChHH
Q 008345 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~ 213 (569)
.++++|||||+|.+.... ....+..++..... +.++++.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345789999999887533 23334445544433 334444444444443
No 222
>PRK08116 hypothetical protein; Validated
Probab=96.13 E-value=0.055 Score=54.20 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=58.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||.... .+...+... +..++++ +..+|...+...+..- +.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~----~~~v~~~-~~~~ll~~i~~~~~~~-------------~~--------- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK----GVPVIFV-NFPQLLNRIKSTYKSS-------------GK--------- 166 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc----CCeEEEE-EHHHHHHHHHHHHhcc-------------cc---------
Confidence 349999999999997544 344455442 4555554 4455544433221100 00
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc--cCCCChHHHHHHHHHhc-CCCCcEEEEEecCChHHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC--LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~--l~~~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~ 215 (569)
.+...+++. +.+.+++||||.+. ..++ ....+..|+... ....++|+.|-..|..+..
T Consensus 167 --------~~~~~~~~~--------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 167 --------EDENEIIRS--------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred --------ccHHHHHHH--------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 011112222 34567999999964 3332 244556666543 3456677776666555443
No 223
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.09 E-value=0.034 Score=52.09 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=31.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
+++.|++|+|||...+--+.+.+. .|.++++++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999865533333322 36778888754 4455665555555
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.06 E-value=0.022 Score=55.32 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=25.8
Q ss_pred eeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 169 l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
.+++||||+|.+... .....+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999998754 235566666655433223455666643
No 225
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.089 Score=59.61 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=67.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCC-eEEEEEcC-cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSP-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g-~~~Lil~P-treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
-+.+.||||+|||.++.......... .| .++.++.- +--.+ ..+.++.++...++.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv--------------- 245 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRIG--ALEQLRIYGRILGVPV--------------- 245 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccchH--HHHHHHHHHHhCCCCc---------------
Confidence 36789999999998766333222111 23 34444442 21111 1233444544434322
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCCh-HHHHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~~~ 217 (569)
.++.+|..+.+.+.. +.+.++|+||=+=+.... ...+.+..+.....+....+.+|||... .+.+.+
T Consensus 246 ------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 ------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred ------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 223466666666654 345578888888765532 2344444444444445567888888643 344454
Q ss_pred Hhc
Q 008345 218 KAG 220 (569)
Q Consensus 218 ~~~ 220 (569)
+.|
T Consensus 315 ~~f 317 (767)
T PRK14723 315 HAY 317 (767)
T ss_pred HHH
Confidence 444
No 226
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.05 E-value=0.063 Score=66.16 Aligned_cols=63 Identities=25% Similarity=0.249 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~--dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
.+++.|++++..++.+. -+++.|..|+|||.+.- .++..+.......+..++.++||---|..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 59999999999999864 58899999999998632 33333221111245678999999776654
No 227
>PRK06921 hypothetical protein; Provisional
Probab=96.05 E-value=0.1 Score=52.17 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
+..+++.|++|+|||.... .+...+... .|..++++. ..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEEE-HHHHHHH
Confidence 5679999999999996433 333333331 156666655 3444444
No 228
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.05 E-value=0.015 Score=57.88 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 164 ~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.+.+.+++||+||||.|.... ...+.+.+...+...+.+|...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 456678999999999987543 455667777766666667766554
No 229
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.01 E-value=0.033 Score=62.44 Aligned_cols=137 Identities=18% Similarity=0.138 Sum_probs=82.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcC----CCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~----~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~ 136 (569)
+-.|+.-..|-|||..-+..++..=.... ...+...||+||+-. ..|+...+.+..+...+.+.+.+| .....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~~~~l~v~v~~g--r~kd~ 229 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTEEDKLSIYVYHG--RTKDK 229 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCCccceEEEEecc--ccccc
Confidence 34888999999999876544433222221 124566899999854 566666666666556677777777 11111
Q ss_pred HHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 137 ~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
.....++||++||+.+-. ..+.--.+-.||+||||.+.+..-. .....-.+...+ ...+|+|+-
T Consensus 230 --~el~~~dVVltTy~il~~-----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~-RWcLtgtPi 293 (674)
T KOG1001|consen 230 --SELNSYDVVLTTYDILKN-----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKY-RWCLTGTPI 293 (674)
T ss_pred --chhcCCceEEeeHHHhhc-----ccccceeEEEEEeccccccCCcchH--hhhhheeeccce-eeeecCChh
Confidence 112468899999987763 1111223456999999999876522 333333333333 366788864
No 230
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.00 E-value=0.051 Score=66.07 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHH--HHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAF--LVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~--lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
.+++-|++++..++.. +-+++.|..|+|||.+. ++-++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 5999999999999976 55899999999999864 2223333222 2467789999987766544
No 231
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.99 E-value=0.062 Score=57.47 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=66.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c-HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P-t-reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
-+++.|++|+|||.+..-.+ ..+.. .|.+++++.. + |.-+ .+.++.++...++.+........
T Consensus 97 vI~lvG~~GsGKTTtaakLA-~~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d------- 161 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLA-RYFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD------- 161 (437)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC-------
Confidence 47889999999998755333 23332 3555665553 2 3322 22344444334443221111111
Q ss_pred HcCCCCEEEECcHH-HHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH
Q 008345 140 LAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 140 l~~~~~IiV~Tp~r-l~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (569)
|.. +.+.+.. +...++||||.+-++.. ....+++..+.....+..-++.++||......+.+
T Consensus 162 -----------~~~i~~~al~~-----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 162 -----------AVEIAKEGLEK-----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred -----------HHHHHHHHHHH-----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 111 2233332 12237899999966442 23445566666666566667888888766555555
Q ss_pred Hh
Q 008345 218 KA 219 (569)
Q Consensus 218 ~~ 219 (569)
..
T Consensus 226 ~~ 227 (437)
T PRK00771 226 KA 227 (437)
T ss_pred HH
Confidence 54
No 232
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.94 E-value=0.0072 Score=64.71 Aligned_cols=143 Identities=22% Similarity=0.270 Sum_probs=73.3
Q ss_pred EEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeEEEEEcCCCHH----HHHHH
Q 008345 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDSME----SQFEE 139 (569)
Q Consensus 65 ~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~~~~gg~~~~----~~~~~ 139 (569)
....||||||++..-.+++...+.- ...|+.|..-.....+.. +........-..-...++|...+ ..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy----r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY----RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch----hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 3467999999988777776655431 236777766555554433 21111111001111112222211 11112
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCC--C---CCCCeeE-EEEeCCCccCCCC-------------hHHHHHHHHHhcCCCC
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVED--M---SLKSVEY-VVFDEADCLFGMG-------------FAEQLHKILGQLSENR 200 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~--~---~l~~l~~-iViDEah~l~~~~-------------f~~~l~~i~~~~~~~~ 200 (569)
-..+..|+.+|-..|...+.+.+. . ++.+..+ ++-||||++-... +...+..-++. .+..
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~ 156 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDN 156 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCc
Confidence 234677999999988766554222 1 2444444 5669999986321 22222222222 2234
Q ss_pred cEEEEEecCChH
Q 008345 201 QTLLFSATLPSA 212 (569)
Q Consensus 201 q~ll~SAT~~~~ 212 (569)
-++.||||.|++
T Consensus 157 ~~lef~at~~k~ 168 (812)
T COG3421 157 LLLEFSATIPKE 168 (812)
T ss_pred eeehhhhcCCcc
Confidence 478899999854
No 233
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.89 E-value=0.064 Score=56.94 Aligned_cols=130 Identities=12% Similarity=0.109 Sum_probs=69.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+.+.|++|+|||.+..-.+. .+.. .|.++++++ |.|.-|. .+++.++...++.+....++......
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~----~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i---- 170 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR----KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKI---- 170 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHH----
Confidence 67899999999976552222 2222 355666665 3454333 35555665556655443333221110
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHh
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (569)
..+.+.. +.-..+++||+|=+-++.. .....++..+.....+..-++.++||........+..
T Consensus 171 -------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~ 234 (429)
T TIGR01425 171 -------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKA 234 (429)
T ss_pred -------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHH
Confidence 0011111 1112456777777765432 1244566666666655556788888876655555555
Q ss_pred c
Q 008345 220 G 220 (569)
Q Consensus 220 ~ 220 (569)
+
T Consensus 235 F 235 (429)
T TIGR01425 235 F 235 (429)
T ss_pred H
Confidence 4
No 234
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.048 Score=56.25 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLVPM 81 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g----~dvl~~a~TGSGKT~a~lip~ 81 (569)
.++|+|...+..+... +-.++.||.|.|||..+..-+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 3579999999888764 248899999999998665433
No 235
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.89 E-value=0.051 Score=57.48 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 42 GYKVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.|...+|.|.+-+..+.. +.+.++..|+|+|||.+.+-.++..-...+ ..-.+.++.+-|..-.......++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-DEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-cccceEEEecCcchHHHHHHHHHH
Confidence 577889999877755432 467999999999999887655554433332 233456666655443333333333
No 236
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.87 E-value=0.052 Score=58.74 Aligned_cols=109 Identities=16% Similarity=0.259 Sum_probs=57.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||.... .+...+... .++.+++++ +..++..+....++. .
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi-~~~~~~~~~~~~~~~---------------~--------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYV-TSEKFTNDFVNALRN---------------N--------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEE-EHHHHHHHHHHHHHc---------------C---------
Confidence 458999999999997543 233333332 125566666 444554443322211 0
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcC-CCCcEEEEEecCChHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~ 214 (569)
+...+... +.++++++|||+|.+.... ....+..++..+. .+.++++.|...|..+.
T Consensus 201 ---------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 11122221 2246789999999876543 2344555554443 34565555555554443
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.047 Score=54.17 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=42.9
Q ss_pred HHCCCCCChHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 008345 39 KRKGYKVPTPIQRKTMPLIL-------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (569)
Q Consensus 39 ~~~g~~~~t~iQ~~~i~~il-------~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~ 111 (569)
....|......+..++..+. .+.++++.|++|+|||.....-. ..+.. .|.+++ ++++-+|+.++..
T Consensus 77 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~-~~l~~----~g~sv~-f~~~~el~~~Lk~ 150 (254)
T COG1484 77 EEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIG-NELLK----AGISVL-FITAPDLLSKLKA 150 (254)
T ss_pred ccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHH-HHHHH----cCCeEE-EEEHHHHHHHHHH
Confidence 33345555556666554433 56799999999999998654333 33333 356544 4677788776555
Q ss_pred HHH
Q 008345 112 FTK 114 (569)
Q Consensus 112 ~~~ 114 (569)
...
T Consensus 151 ~~~ 153 (254)
T COG1484 151 AFD 153 (254)
T ss_pred HHh
Confidence 433
No 238
>PRK12377 putative replication protein; Provisional
Probab=95.80 E-value=0.061 Score=53.11 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=55.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||-... .+...+.. .|..+++ ++..+|..++...+.. +.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v~~-i~~~~l~~~l~~~~~~--------------~~--------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSVIV-VTVPDVMSRLHESYDN--------------GQ--------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCeEE-EEHHHHHHHHHHHHhc--------------cc---------
Confidence 579999999999997433 33334433 3555544 4555666654332210 00
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCC-CCcEEEEEec
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSAT 208 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~-~~q~ll~SAT 208 (569)
+...+++. +.++++|||||.+...... -...+..|+..--. ...+++.|-=
T Consensus 153 ---------~~~~~l~~--------l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 153 ---------SGEKFLQE--------LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred ---------hHHHHHHH--------hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 01112211 4568899999996543222 23455556655433 4566665554
No 239
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.054 Score=55.51 Aligned_cols=145 Identities=21% Similarity=0.238 Sum_probs=74.2
Q ss_pred CCCChHHHHHHHHHHhc----CC---cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 43 YKVPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~----g~---dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
+..++|+|..++..+.. |+ -.++.||.|+||+..+..-+-..+.......+ -|+...+ + .
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~-----~c~~c~~-------~-~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA-----AQRTRQL-------I-A 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC-----cchHHHH-------H-h
Confidence 46789999999987653 32 38899999999998655333323332211111 1222111 1 1
Q ss_pred hcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHh
Q 008345 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (569)
Q Consensus 116 ~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~ 195 (569)
-+...++.+.....+.... .....|.|-.--.+.+.+... -.....+++|||+||.|.... ...+..+++.
T Consensus 69 ~g~HPD~~~i~~~p~~~~~------k~~~~I~idqIR~l~~~~~~~--p~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEE 139 (319)
T PRK08769 69 AGTHPDLQLVSFIPNRTGD------KLRTEIVIEQVREISQKLALT--PQYGIAQVVIVDPADAINRAA-CNALLKTLEE 139 (319)
T ss_pred cCCCCCEEEEecCCCcccc------cccccccHHHHHHHHHHHhhC--cccCCcEEEEeccHhhhCHHH-HHHHHHHhhC
Confidence 1233344333111100000 000112221111222222221 123467899999999987653 5566667777
Q ss_pred cCCCCcEEEEEecC
Q 008345 196 LSENRQTLLFSATL 209 (569)
Q Consensus 196 ~~~~~q~ll~SAT~ 209 (569)
-|.+..+++.|..+
T Consensus 140 Pp~~~~fiL~~~~~ 153 (319)
T PRK08769 140 PSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCeEEEEECCh
Confidence 77777777776554
No 240
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.72 E-value=0.038 Score=60.24 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 48 PIQRKTMPLILS-----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 48 ~iQ~~~i~~il~-----g----~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
|+|.-++-.++. | +.+++.-+-|-|||......++..+.-. ...|..+++.+++++-|..+++.++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 678888877762 2 3478888899999986555545444322 23467899999999999999998887654
Q ss_pred cCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh-cCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~-~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
........ .+ .. ... ...-.|..-..+.++..+.. .....-.+..++|+||+|..-+......+..-+...
T Consensus 80 ~~~~l~~~-~~-~~---~~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r- 151 (477)
T PF03354_consen 80 ASPELRKR-KK-PK---IIK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR- 151 (477)
T ss_pred hChhhccc-hh-hh---hhh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-
Confidence 42111000 00 00 000 01122332222222222221 122344567899999999987654444444444443
Q ss_pred CCCcEEEEE
Q 008345 198 ENRQTLLFS 206 (569)
Q Consensus 198 ~~~q~ll~S 206 (569)
++.+++..|
T Consensus 152 ~~pl~~~IS 160 (477)
T PF03354_consen 152 PNPLIIIIS 160 (477)
T ss_pred CCceEEEEe
Confidence 344454443
No 241
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.70 E-value=0.067 Score=57.83 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHH-HHHCCCCCC-------hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC-CCCeEE
Q 008345 26 ESLNLSPNVFRA-IKRKGYKVP-------TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRA 96 (569)
Q Consensus 26 ~~l~l~~~~~~~-l~~~g~~~~-------t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~-~~g~~~ 96 (569)
++.++.++++.. |.+.-=.++ -+-|-++|.. -.++-+|++|..|||||.+++--+...+..+.. ..+..+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 455677776554 444333333 3334444432 235679999999999999887555444444322 234459
Q ss_pred EEEcCcHHHHHHHHHHHHHhc
Q 008345 97 LILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~ 117 (569)
||+.|.+-+..-+..++=++|
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999998888888776
No 242
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.69 E-value=0.11 Score=51.85 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=83.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-c-H-HHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-R-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P-t-r-eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
..+++.|++|+|||..+..-+.. +.. .+.++.++.- + | ..+.|+.. ++...++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~----~~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~------------ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI------------ 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH----cCCeEEEEecCCCCHHHHHHHHH----HhhhcCceEE------------
Confidence 46889999999999976644332 222 2334444442 2 2 44445433 3322223221
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCC-hHHHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~-~~~~~ 215 (569)
...+|..+.+.+.... ....+++|+||-+=+... ......+..++....+..-.+.+|||.. ..+.+
T Consensus 135 ---------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1134555554443311 123578999999877642 2234555566655544444667999864 46667
Q ss_pred HHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 008345 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (569)
Q Consensus 216 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~ 262 (569)
.++.+-. +. --...+-.+....+...++.+....
T Consensus 204 ~~~~f~~----~~---------~~~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 204 IITNFKD----IH---------IDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred HHHHhCC----CC---------CCEEEEEeecCCCCccHHHHHHHHH
Confidence 7776532 10 0122333444445666677766654
No 243
>PRK06893 DNA replication initiation factor; Validated
Probab=95.69 E-value=0.026 Score=55.20 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=29.9
Q ss_pred CCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCC-CCcEEEEEecCCh
Q 008345 167 KSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~-~~q~ll~SAT~~~ 211 (569)
.+.+++|+||+|.+... .+...+..++..... +.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 45689999999987643 344456666665544 3456777777644
No 244
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.62 E-value=0.067 Score=49.26 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHH
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~ 216 (569)
...+++||||||.|... -...+..+++.-|.....+|.|..+..-+..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI 149 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSKILPTI 149 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHH
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHHChHHH
Confidence 46889999999998764 36667777787777777777776654433333
No 245
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.61 E-value=0.035 Score=54.48 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=26.2
Q ss_pred eeEEEEeCCCccCCC-ChHHHHHHHHHhcCC-CCcEEEEEecCCh
Q 008345 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (569)
Q Consensus 169 l~~iViDEah~l~~~-~f~~~l~~i~~~~~~-~~q~ll~SAT~~~ 211 (569)
+++++|||+|.+... .+...+..++..... +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999998643 345556666655543 3324555555443
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.61 E-value=0.21 Score=51.51 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
+..+++.|+||+|||.... .+...+.. .|..|+++ +..+|..++... .+. . ..+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y~-t~~~l~~~l~~~--~~~------------~-~~~~~--- 238 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIYR-TADELIEILREI--RFN------------N-DKELE--- 238 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEEE-EHHHHHHHHHHH--Hhc------------c-chhHH---
Confidence 5789999999999997433 33333433 35666654 445555543321 010 0 00000
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh-HHHHHHHHHhcCC-CCcEEEEEecCChHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f-~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~ 214 (569)
..++. +.+++++|||+.+......| ...+..++..... ..++++.|--.|..+.
T Consensus 239 -------------~~~~~--------l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 239 -------------EVYDL--------LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELL 294 (329)
T ss_pred -------------HHHHH--------hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 00111 34578999999987654433 3456666655433 4556665555555543
No 247
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.61 E-value=0.025 Score=64.22 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.++|-|++++.. ....+++.|..|||||.+..--+...+... ..+..++|+|+.|+.-|..+.+.+...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 488999999865 345788999999999998665555444332 123457999999999999988877654
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.58 E-value=0.09 Score=56.07 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=56.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||.... .+...+... .++..++++.. .++..++...+..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~--~~~~~v~yi~~-~~~~~~~~~~~~~------------------------- 187 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN--NPNAKVVYVSS-EKFTNDFVNALRN------------------------- 187 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh--CCCCcEEEEEH-HHHHHHHHHHHHc-------------------------
Confidence 358899999999997543 333344332 23566777753 3343332221110
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcC-CCCcEEEEEecCChHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~ 214 (569)
+ +...+...+ .+++++||||+|.+.... ....+..++..+. .++++++.|...|..+.
T Consensus 188 --~------~~~~~~~~~--------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 188 --N------KMEEFKEKY--------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred --C------CHHHHHHHH--------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 0 112222222 235789999999876542 2334555554443 34565554444444443
No 249
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.57 E-value=0.032 Score=59.27 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=75.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre-La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
-.++.|..|||||.+...-++..+... .++.+++++-|+.. |..-++..+.......++....-.....+. +. +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~--i~-~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME--IK-I 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE--EE-e
Confidence 367899999999998887777776653 13577999999887 555566666654333333211111111000 00 0
Q ss_pred cC-CCCEEEECc-HHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC--CCCcEEEEEecCChH
Q 008345 141 AQ-NPDIIIATP-GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSA 212 (569)
Q Consensus 141 ~~-~~~IiV~Tp-~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~--~~~q~ll~SAT~~~~ 212 (569)
.. +..|++..- +..-. ......+.++.+|||..+... .+..++.++. ...+.+++|.||+..
T Consensus 78 ~~~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred cCCCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11 333444332 11111 112334689999999998543 3333333333 233358899998654
No 250
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.55 E-value=0.074 Score=60.49 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH-CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
..|....+..+...+..+.++||.++|...+..+.+.|.+ .+..+..+||+++..+|.....+..+|+.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4567666666766666788999999999999999988876 478899999999999999988899999999999997543
Q ss_pred ccCCCCCCCEEEEcC
Q 008345 328 RGIDIPLLDNVINWD 342 (569)
Q Consensus 328 rGlDip~v~~VI~~d 342 (569)
. +.++++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5567788877433
No 251
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.53 E-value=0.058 Score=61.12 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
..+++-|++++-. ...++++.|..|||||.+.+--+...+... ...+.++|+++.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 3599999999853 335689999999999987664444333332 223567999999999999888776654
No 252
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.47 E-value=0.038 Score=55.02 Aligned_cols=66 Identities=17% Similarity=0.328 Sum_probs=54.1
Q ss_pred HHHHHHhcCCceEEEEeccccccCCCCCC--------CEEEEcCCCCChhHHHHHhhccccCCCc-cEEEEEecc
Q 008345 307 IHVSRFRARKTMFLIVTDVAARGIDIPLL--------DNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTS 372 (569)
Q Consensus 307 ~~l~~F~~g~~~ILV~Tdv~arGlDip~v--------~~VI~~d~p~s~~~~~qrvGR~gR~g~~-G~~i~~v~~ 372 (569)
...+.|.+|+.+|+|.|+.++.|+.+-.- .+-|...+|++....+|..||+.|.|+. .-.|.++..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 44678999999999999999999998632 3456788999999999999999999884 445555554
No 253
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.45 E-value=0.065 Score=54.97 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.0
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
..++|||||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999844334566677777777666655543
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.44 E-value=0.13 Score=55.44 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=60.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+++.|++|+|||-.. -.+...+... .++.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 35899999999999533 2333333332 23567777665 455554443332100
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCC-CCcEEEEEecCChHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~ 213 (569)
+.+...... +.+++++|+||+|.+... ...+.+..++..+.. +.|+++.|-..|..+
T Consensus 195 -----------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 111111111 345779999999987643 234555566655543 346555555555443
No 255
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.44 E-value=0.046 Score=53.23 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.5
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCc-EEEEEecCCh
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ-TLLFSATLPS 211 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q-~ll~SAT~~~ 211 (569)
..+++||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999987543 34455566655544444 5777777543
No 256
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.44 E-value=0.093 Score=55.82 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
+-......+..+..++++++.|++|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444555666777789999999999999998654
No 257
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.046 Score=56.45 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++|++||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 469999999999998654
No 258
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.38 E-value=0.17 Score=50.85 Aligned_cols=132 Identities=18% Similarity=0.226 Sum_probs=65.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (569)
+-+++.|++|+|||.+..-.+. .+.. .|.+++++. +.|.-+.+ .++.++...++.+.....+....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~-~l~~----~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~dp~---- 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN-KLKK----QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGADPA---- 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCCHH----
Confidence 3467789999999986653332 2222 356676665 33433322 33334333344332111111111
Q ss_pred HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcC------CCCcEEEEEecCCh
Q 008345 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLS------ENRQTLLFSATLPS 211 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~------~~~q~ll~SAT~~~ 211 (569)
....+.+.. ....++++||+|=+-++.. .....++..+.+..+ +.--++.++||...
T Consensus 141 -------------~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 141 -------------AVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred -------------HHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 111111111 1124567888887776542 223445566555544 44557888998765
Q ss_pred HHHHHHHhc
Q 008345 212 ALAEFAKAG 220 (569)
Q Consensus 212 ~~~~~~~~~ 220 (569)
.....+..+
T Consensus 205 ~~~~~~~~f 213 (272)
T TIGR00064 205 NALEQAKVF 213 (272)
T ss_pred HHHHHHHHH
Confidence 544444443
No 259
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.36 E-value=0.24 Score=52.31 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=65.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+++.||+|+|||....-.+...... .|.++.++. +.|..+.+ .++.++...++....
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~-------------- 284 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP-------------- 284 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee--------------
Confidence 7789999999998766333322121 345555544 33444443 444554444443211
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-CCChHHHHHHHHHhcC---CCCcEEEEEecCCh-HHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS---ENRQTLLFSATLPS-ALAE 215 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-~~~f~~~l~~i~~~~~---~~~q~ll~SAT~~~-~~~~ 215 (569)
+..+..+...+. -.+.++|+||=+-+.. +..-...+..++.... +....+.+|||... .+..
T Consensus 285 -------~~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 -------VKDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred -------hHHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 011222333332 1356789999776543 2234455555555442 22356888999866 5555
Q ss_pred HHHhc
Q 008345 216 FAKAG 220 (569)
Q Consensus 216 ~~~~~ 220 (569)
.++.+
T Consensus 352 ~~~~f 356 (432)
T PRK12724 352 VLKAY 356 (432)
T ss_pred HHHHh
Confidence 55544
No 260
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.33 E-value=0.25 Score=49.28 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHhc----CC-cEEEEcCCCchHHHHHH
Q 008345 45 VPTPIQRKTMPLILS----GA-DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g~-dvl~~a~TGSGKT~a~l 78 (569)
.+++.+.+++..+.. +. .+++.|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 467777777765532 23 48899999999998654
No 261
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.087 Score=57.72 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~a 327 (569)
..|....+..+...+..+.++||.+++...+..+.+.|.+. +..+..+||+++..+|.....+..+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 44666666677666677889999999999999998888764 67789999999999999998888999999999996544
Q ss_pred ccCCCCCCCEEEE
Q 008345 328 RGIDIPLLDNVIN 340 (569)
Q Consensus 328 rGlDip~v~~VI~ 340 (569)
- ..++++.+||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 3 45667888773
No 262
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.30 E-value=0.075 Score=60.54 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHH----HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~----~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
..|....+..+...+..+.+++|.++|+.-+...++.+. ..++.+..+||+++..+|..++....+|+.+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 445544433333344567899999999988887766554 4578899999999999999999999999999999996
Q ss_pred c-ccccCCCCCCCEEEE
Q 008345 325 V-AARGIDIPLLDNVIN 340 (569)
Q Consensus 325 v-~arGlDip~v~~VI~ 340 (569)
. +...+.++++.+||.
T Consensus 373 ~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 373 ALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHhcccchhcccceEEE
Confidence 4 445677889998884
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=95.28 E-value=0.16 Score=50.57 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
+..+.++++.||+|+|||........ .+.. .|..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~-~a~~----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGY-EAVR----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHH-HHHH----cCCeEEEEe-HHHHHHH
Confidence 45678899999999999975442222 2222 356676654 3445443
No 264
>PRK10867 signal recognition particle protein; Provisional
Probab=95.24 E-value=0.15 Score=54.50 Aligned_cols=130 Identities=20% Similarity=0.205 Sum_probs=64.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+++.|++|+|||.+..-.+. .+... .|.+++++. +.|.-+. +.++.++...++.+.....+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~~---~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~--------- 166 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKKK---KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQ--------- 166 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHHh---cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCC---------
Confidence 67899999999986653332 22221 255566555 3444333 233334444455443221111
Q ss_pred cCCCCEEEECcHHHHH-HHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHH
Q 008345 141 AQNPDIIIATPGRLMH-HLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~-~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (569)
.|..+.. .+.. .....+++||+|=+=++.. ......+..+.....+..-++.++|+......+.++
T Consensus 167 ---------dp~~i~~~a~~~---a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~ 234 (433)
T PRK10867 167 ---------DPVDIAKAALEE---AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAK 234 (433)
T ss_pred ---------CHHHHHHHHHHH---HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHH
Confidence 1222221 1111 1123466777777765432 223344555555554444467777776555555555
Q ss_pred hc
Q 008345 219 AG 220 (569)
Q Consensus 219 ~~ 220 (569)
.+
T Consensus 235 ~F 236 (433)
T PRK10867 235 AF 236 (433)
T ss_pred HH
Confidence 54
No 265
>CHL00181 cbbX CbbX; Provisional
Probab=95.23 E-value=0.3 Score=49.46 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.++++.||+|+|||.++-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458999999999998665
No 266
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.20 E-value=0.046 Score=62.73 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
..++|-|++++.. ....+++.|..|||||.+..--+...+... .-+..++|+|+-|+..|..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3599999999964 345799999999999988654444333322 2234579999999999999988777653
No 267
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.19 E-value=0.041 Score=63.19 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
..++|-|++++.. ....+++.|..|||||.+..--+...+... .-+..++|+|+.|+.-|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4589999999964 346799999999999988654444333322 2234579999999999999888777653
No 268
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.18 E-value=0.25 Score=43.00 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999998544
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.11 E-value=0.12 Score=53.70 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
++-+++.||+|+|||....-.+.. +.. .|.++.++. |.|.=| .++++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~------------ 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGA---VEQFQGYADKLDVELI------------ 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccH---HHHHHHHhhcCCCCEE------------
Confidence 345789999999999865533322 222 244555544 223211 1233444433333221
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCCh-HHHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS-ALAE 215 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~ 215 (569)
++.+|..+.+.+.... ...+.++|+||=+=+.... .....+..+.....+.--.+.+|||... .+..
T Consensus 266 ---------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~ 334 (407)
T PRK12726 266 ---------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT 334 (407)
T ss_pred ---------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHH
Confidence 2234555555444311 1245678888877664322 2334444444444333334566776543 3444
Q ss_pred HHHh
Q 008345 216 FAKA 219 (569)
Q Consensus 216 ~~~~ 219 (569)
++..
T Consensus 335 i~~~ 338 (407)
T PRK12726 335 ILPK 338 (407)
T ss_pred HHHh
Confidence 4433
No 270
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.09 E-value=0.2 Score=50.00 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.||+|+|||.+.-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998654
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=95.08 E-value=0.24 Score=50.93 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=25.4
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
..+++|+||+|.+.... ...+..++...+....++ ++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 57899999999987543 455566666555555444 4444
No 272
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.00 E-value=0.12 Score=50.20 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=60.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (569)
.+++.|++|+|||-. +-.+...+.... ++.+++++... +........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH--PGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC--TTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc--ccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 489999999999973 334444444321 35667776543 443333332221
Q ss_pred CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC-hHHHHHHHHHhcC-CCCcEEEEEecCChHH
Q 008345 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (569)
Q Consensus 142 ~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~ 213 (569)
.....+.+. +...++++||..|.+.... ....+..++..+. .+.++++.|...|..+
T Consensus 86 -------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 111222222 3357899999999987642 4455666666553 3567777776776653
No 273
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.98 E-value=0.053 Score=63.00 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=90.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhc-------------CCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEE
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-------------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~-------------~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~ 126 (569)
|+++++.-..|+|||.+-+...+..+-.. ........|||+|. ++..||...+...... ++++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cceEEE
Confidence 46789999999999987665544332110 00112347999997 5667888877765533 366666
Q ss_pred EEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-------------C----CCCee--EEEEeCCCccCCCChHH
Q 008345 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-------------S----LKSVE--YVVFDEADCLFGMGFAE 187 (569)
Q Consensus 127 ~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-------------~----l~~l~--~iViDEah~l~~~~f~~ 187 (569)
..|=...-.....-.-.+|||++|+..|..-+...... + |-.+. =|++|||+.+-. ...
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 65532211100011236999999999886544332110 0 11111 289999987655 356
Q ss_pred HHHHHHHhcCCCCcEEEEEecCChHHHH
Q 008345 188 QLHKILGQLSENRQTLLFSATLPSALAE 215 (569)
Q Consensus 188 ~l~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (569)
...+++.+++. ......|+||-..+.+
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhhhhh
Confidence 66777777764 3468999997444443
No 274
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.95 E-value=0.061 Score=61.24 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
++|-|++++.. ...++++.|..|||||.+.+--+...+..... ...++|+|+.|+.-|.++.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-KARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 78999999864 35689999999999999866555555533222 2457999999999999988877654
No 275
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.95 E-value=0.76 Score=48.90 Aligned_cols=160 Identities=17% Similarity=0.130 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
|.-+.+.|+||+|||......+-...... ......++.+.+.-.+. .+.+..+++..|+.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~--~~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~v------------ 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRH--GADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRSI------------ 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEecCCcchhH--HHHHHHHHHHcCCceecC------------
Confidence 34488999999999986553322221111 11233566666533322 233555555445544322
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCCh-HHHHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~~~ 217 (569)
.++..+...+.. +.+.+++++|.+=+.-. .....++..+....++....+.+|||... .+.+.+
T Consensus 255 ---------~~~~dl~~al~~-----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 255 ---------KDIADLQLMLHE-----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---------CCHHHHHHHHHH-----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 223223222222 44567788887633221 11233444432222233456889999643 455555
Q ss_pred HhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 008345 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (569)
Q Consensus 218 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~ 262 (569)
..+-.-+ --...+-.+....+...++.++...
T Consensus 321 ~~f~~~~-------------~~~~I~TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 321 SAYQGHG-------------IHGCIITKVDEAASLGIALDAVIRR 352 (420)
T ss_pred HHhcCCC-------------CCEEEEEeeeCCCCccHHHHHHHHh
Confidence 5542111 1122233344445566666766554
No 276
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.94 E-value=0.099 Score=52.33 Aligned_cols=65 Identities=26% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 33 ~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
++.++|..-|.....|.--+.+--+..|.-+++.|++|+|||...+.-+...... .|..+++++-
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~ 67 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISL 67 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEc
Confidence 3445554333333222222222233456778999999999997555333332222 2677888875
No 277
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.12 Score=53.14 Aligned_cols=58 Identities=24% Similarity=0.464 Sum_probs=36.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHC------CCC--------CC-hHHHHHH-H----HHHhcC-----CcEEEEcCCCchH
Q 008345 19 KSKSGGFESLNLSPNVFRAIKRK------GYK--------VP-TPIQRKT-M----PLILSG-----ADVVAMARTGSGK 73 (569)
Q Consensus 19 ~~~~~~f~~l~l~~~~~~~l~~~------g~~--------~~-t~iQ~~~-i----~~il~g-----~dvl~~a~TGSGK 73 (569)
+.+...|++++....+..+|..- +.+ .. .-.+..+ + |....| +.++..||+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 44667899999998888888641 111 11 1112222 1 333344 6799999999999
Q ss_pred HHH
Q 008345 74 TAA 76 (569)
Q Consensus 74 T~a 76 (569)
|+.
T Consensus 259 TlL 261 (491)
T KOG0738|consen 259 TLL 261 (491)
T ss_pred HHH
Confidence 974
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.91 E-value=0.16 Score=49.56 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=31.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.|.-+++.|++|+|||...+--+.. +.. .|.++++++..- -..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~-~~~----~g~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYG-FLQ----NGYSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHh----CCCcEEEEeCCC-CHHHHHHHHHHh
Confidence 4677999999999999864422322 222 356788888532 233444444444
No 279
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.88 E-value=0.055 Score=59.94 Aligned_cols=122 Identities=22% Similarity=0.267 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCC
Q 008345 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTD 121 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~ 121 (569)
..+|+|++.+..+-.. +.|+++.++-+|||.+.+..+...+... ...+|++.||.++|....+ .+..+.+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD----PGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC----CCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 5789999999887653 5799999999999996664443333332 2349999999999998774 5554433211
Q ss_pred -CeEEEEEc------CCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 122 -LRISLLVG------GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 122 -l~~~~~~g------g~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
++ ..+.. +.+. ....+ .+..+.++.-+.- ..+.-..+.++++||.|...
T Consensus 92 ~l~-~~~~~~~~~~~~~t~--~~k~f-~gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 92 VLR-RKLSPSKSRDSGNTI--LYKRF-PGGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHH-HHhCchhhcccCCch--hheec-CCCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 11 11111 1111 11111 2333444332111 12344568899999999985
No 280
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.85 E-value=0.11 Score=55.49 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.-.+|+|||+|++.. .+...++..+. ...++++.+|-
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 456899999999653 22333444443 34566777764
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.80 E-value=0.29 Score=52.77 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=29.1
Q ss_pred CeeEEEEeCCCccCCCC-hHHHHHHHHHhcCC-CCcEEEEEecCChHHHHH
Q 008345 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALAEF 216 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~~~ 216 (569)
+.+++++||+|.+.+.. ....+..++..+.. +.++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999886542 33445555554433 445555554555555444
No 282
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.78 E-value=0.25 Score=52.73 Aligned_cols=130 Identities=22% Similarity=0.212 Sum_probs=64.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~-P-treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+++.|++|+|||.+..-.+.. +... .|.+++++. - .|.-+.+ .++.++...++.+.....+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~-l~~~---~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P------- 167 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY-LKKK---QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSP------- 167 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh---CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCH-------
Confidence 778999999999876533332 2211 245565554 2 3433332 3444444445544332222221
Q ss_pred cCCCCEEEECcHHHH-HHHhhcCCCCCCCeeEEEEeCCCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHH
Q 008345 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~-~~l~~~~~~~l~~l~~iViDEah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (569)
..+. +.+.. .....+++||+|=+-++.. ......+..+...+.+.--++.++||........+.
T Consensus 168 -----------~~i~~~al~~---~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~ 233 (428)
T TIGR00959 168 -----------VEIARRALEY---AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAK 233 (428)
T ss_pred -----------HHHHHHHHHH---HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHH
Confidence 1111 11111 1123456777777766542 223445555555554444466777776655555555
Q ss_pred hc
Q 008345 219 AG 220 (569)
Q Consensus 219 ~~ 220 (569)
.+
T Consensus 234 ~f 235 (428)
T TIGR00959 234 TF 235 (428)
T ss_pred HH
Confidence 43
No 283
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.76 E-value=0.078 Score=53.98 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=57.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
..+|++||+|+|||..+- .+.........+.+=++-|..-+..+.+.++.-.+
T Consensus 163 pSmIlWGppG~GKTtlAr-----lia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~---------------------- 215 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLAR-----LIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN---------------------- 215 (554)
T ss_pred CceEEecCCCCchHHHHH-----HHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH----------------------
Confidence 369999999999997543 22233333445666677666655555544443210
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
.....++-.++.+||+|| |....+.++--.-++--++|..||-.+
T Consensus 216 ---------------------~~~l~krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 216 ---------------------EKSLTKRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred ---------------------HHhhhcceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEecccCC
Confidence 001123445799999999 554444443333345567888888543
No 284
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.75 E-value=0.11 Score=53.37 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 37 AIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 37 ~l~~~g~~~~t~iQ~~~i~~il-~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
.+.+.|. +++.|...+..+. .+.++++.|+||||||.. +-.++..+... .++.+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--CCCceEEEecCCcccc
Confidence 3445554 5677887776544 467899999999999974 33444444322 1346788888888874
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.72 E-value=0.14 Score=55.22 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCeeEEEEeCCCccCCCC-hHHHHHHHHHhc-CCCCcEEEEEecCChHHHH
Q 008345 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~-f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~ 215 (569)
.++++++|||+|.+.... ..+.+..++..+ ..+.++++.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 357899999999986532 244455555443 2356666666666665543
No 286
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.72 E-value=0.07 Score=54.26 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 29 ~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~-dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
.+++..+....-..|..+++-|...+..+...+ +++++|.||||||... - .+..... ...+++.+--|.||-.
T Consensus 141 Kf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL--N---al~~~i~-~~eRvItiEDtaELql 214 (355)
T COG4962 141 KFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL--N---ALSGFID-SDERVITIEDTAELQL 214 (355)
T ss_pred ccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH--H---HHHhcCC-CcccEEEEeehhhhcc
Confidence 344454444444578899999999998887765 9999999999999832 2 2322222 2348999999999855
Q ss_pred H
Q 008345 108 Q 108 (569)
Q Consensus 108 Q 108 (569)
+
T Consensus 215 ~ 215 (355)
T COG4962 215 A 215 (355)
T ss_pred C
Confidence 4
No 287
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.71 E-value=0.2 Score=56.56 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC-C-CCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 008345 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (569)
Q Consensus 248 ~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-~-~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (569)
...|....+.++...+..+.++||.++....+..+...|... + ..+..+|++++..+|.....+..+|+.+|+|+|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 357888899999998888999999999999999999888865 3 56889999999999999999999999999999976
Q ss_pred ccccCCCCCCCEEEEcC
Q 008345 326 AARGIDIPLLDNVINWD 342 (569)
Q Consensus 326 ~arGlDip~v~~VI~~d 342 (569)
+. =.-++++.+||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 53 24566777877444
No 288
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.70 E-value=0.59 Score=43.22 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=28.0
Q ss_pred CeeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhc
Q 008345 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (569)
Q Consensus 168 ~l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~ 220 (569)
..+++|+|...... +......+..+........-++.++|+-+......+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 56678888877643 222334444443333344455666666555544444443
No 289
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.65 E-value=0.26 Score=50.91 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=26.1
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...++||+||+|.+.+. ....+..++...+....+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45678999999987642 34456666666666665554 444
No 290
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.61 E-value=0.24 Score=62.59 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHH---HHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFL---VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~--dvl~~a~TGSGKT~a~l---ip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
.+++.|++++..++.+. -+++.|..|+|||.... -++.+.+.. .|..++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHH
Confidence 59999999999998764 47789999999998651 223333222 467899999997665543
No 291
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.60 E-value=0.092 Score=53.03 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998654
No 292
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.52 E-value=0.13 Score=58.11 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
..|....+..+......+.+++|.++|+.-++..++.+.. .++.+..++|+++...|...++...+|+.+|+|+|.
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~ 346 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecH
Confidence 3455443333333445678999999999988877666554 478999999999999999999999999999999996
Q ss_pred cc-cccCCCCCCCEEEE
Q 008345 325 VA-ARGIDIPLLDNVIN 340 (569)
Q Consensus 325 v~-arGlDip~v~~VI~ 340 (569)
.+ ...+++.++.+||.
T Consensus 347 ~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 347 ALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHhccccccccceEEE
Confidence 44 35677888888873
No 293
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.48 E-value=0.12 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhc
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQH 88 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~ 88 (569)
+++.||||||||.. +..|+..+.++
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 88999999999975 55677777655
No 294
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.25 Score=51.16 Aligned_cols=42 Identities=29% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
....+++|||+||+|.... ...+...++.-|++..++|.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECC
Confidence 3567899999999987653 45566666765656655555554
No 295
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.2 Score=57.81 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...+++||||+|.|.... ...|.++++..+....+||.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 568899999999998654 445667777776666555544
No 296
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.43 E-value=0.069 Score=49.69 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=51.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCC
Q 008345 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143 (569)
Q Consensus 64 l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~ 143 (569)
|+.|+-|-|||.+..+.+...+.. ...+++|-+|+.+=+..+++.+..-.+..+++..... ...........+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-----------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---cccccccccccc
Confidence 578999999998766333222211 1247999999998777777655443332233220000 000000111235
Q ss_pred CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 144 ~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
..|-+..|+.+... ....+++|||||=.+. ...+..++. ....++||.|..
T Consensus 74 ~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~----~~~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLR----RFPRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEBS
T ss_pred ceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHh----hCCEEEEEeecc
Confidence 66777777766522 1235789999996643 233444433 334678888873
No 297
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.41 E-value=0.84 Score=41.77 Aligned_cols=131 Identities=24% Similarity=0.325 Sum_probs=77.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEE---EcC---cHHHHHHHHHHHHHhcccCCCeEEEEEcC-----C
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI---LSP---TRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Li---l~P---treLa~Q~~~~~~~~~~~~~l~~~~~~gg-----~ 131 (569)
+.+...+|.|||.+.+--.+..+. .|.++++ +=. +-|+ ..++.+. ++.+...-.+ .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~vQFlKg~~~~gE~-----~~l~~l~---~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG-----HGYRVGVVQFLKGGWKYGEL-----KALERLP---NIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEEeCCCCccCHH-----HHHHhCC---CcEEEECCCCCccCCC
Confidence 556677899999988766655443 3677777 322 2222 2344442 3333221111 1
Q ss_pred CHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh--HHHHHHHHHhcCCCCcEEEEEecC
Q 008345 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 132 ~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f--~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
...+.... ....++...+ .+....++++|+||+-...+.++ .+.+..++...|...-+|+.+-.+
T Consensus 72 ~~~~~~~~-----------a~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 72 NDEEDIAA-----------AAEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred ChHHHHHH-----------HHHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11111111 0122222222 13345789999999998776664 567888888888888888888889
Q ss_pred ChHHHHHHHh
Q 008345 210 PSALAEFAKA 219 (569)
Q Consensus 210 ~~~~~~~~~~ 219 (569)
|+++.+.+..
T Consensus 139 p~~l~e~AD~ 148 (159)
T cd00561 139 PKELIEAADL 148 (159)
T ss_pred CHHHHHhCce
Confidence 9888777653
No 298
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.41 E-value=0.3 Score=54.14 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=31.2
Q ss_pred CCeeEEEEeCCCccCCCC-hHHHHHHHHHhcCC-CCcEEEEEecCChHHH
Q 008345 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~-f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~ 214 (569)
.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457899999999886543 34555566665544 4677766665555543
No 299
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.41 E-value=0.16 Score=54.84 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+.+.||||+|||.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 347789999999999765
No 300
>PF05729 NACHT: NACHT domain
Probab=94.28 E-value=0.38 Score=43.62 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCC-eEEEEEcCcHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLAL 107 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g-~~~Lil~PtreLa~ 107 (569)
-+++.|++|+|||.... -+...+........ ..+.+..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR-KLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHH-HHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 37899999999998543 44444444322222 23455555554443
No 301
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.23 Score=55.30 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...+++||||+|+|.... ...+..++...|....+| +.+|
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FI-LaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFL-FATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEE-EEEC
Confidence 457899999999987654 344566666655555444 4445
No 302
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.18 E-value=0.21 Score=48.19 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
+++++||+|.|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 58999999999998543
No 303
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.15 E-value=0.2 Score=58.67 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
..|....+..+...+..+.+++|.++|..-+....+.+.. .++.+..++|..+..++..+++.+.+|+.+|+|+|.
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 4455544444444444578999999999999988877665 356778899999999999999999999999999995
Q ss_pred -cccccCCCCCCCEEEE
Q 008345 325 -VAARGIDIPLLDNVIN 340 (569)
Q Consensus 325 -v~arGlDip~v~~VI~ 340 (569)
.+.+.+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 5556788888988774
No 304
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.25 Score=55.75 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...+++||||+|.|....+ ..+..+++.-+....+|| ++|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEE-EEC
Confidence 4578999999999876543 344555666555444444 444
No 305
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.13 E-value=0.15 Score=52.28 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=44.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 35 ~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+..+.+.|+ +++.|.+.+.. +..++++++.|+||||||.. +-.++..+... .+..+++++-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~--~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ--DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc--CCCceEEEEcCCCccc
Confidence 445555565 56778888765 44578899999999999964 33444333211 2346788888888873
No 306
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.09 E-value=0.42 Score=53.60 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
...+++||||+|+|.... ...+..+++.-|....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999987654 33444556655544444443
No 307
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.36 Score=50.66 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
....++||||+|.+....+ ..+...+...|....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999999875433 2344455555545444443
No 308
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.08 E-value=0.13 Score=62.50 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-hcccCCCe
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLR 123 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~-~~~~~~l~ 123 (569)
+.|+-|.++|. ..++++++.|..|||||.+.+--++..+.... .-.++|+++=|+.-|..+.+.+.. +.+...-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV--DIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 36899999997 46889999999999999988766766665431 124699999999999888776654 2211100
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC--CCCCCeeEEEEeCCCc
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSLKSVEYVVFDEADC 179 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~--~~l~~l~~iViDEah~ 179 (569)
........+.+..-...-|+|-..+...+.+... +++ +..+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHHH
Confidence 0011112222333345668888777544433111 111 123455776654
No 309
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.42 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~ 88 (569)
.++++.|+||+|||.+.- -+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 469999999999998644 344455443
No 310
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.06 E-value=0.32 Score=49.64 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=28.9
Q ss_pred CCCeeEEEEeCCCccCCCChHH--HHHHHHH-hcCCCCcEEEEEecCChHHHH
Q 008345 166 LKSVEYVVFDEADCLFGMGFAE--QLHKILG-QLSENRQTLLFSATLPSALAE 215 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~--~l~~i~~-~~~~~~q~ll~SAT~~~~~~~ 215 (569)
+.+++++||||.....-..+.. -+..|+. ++.....+++.|--.+..+..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 4568899999997543333332 3344544 334556666666655555444
No 311
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.01 E-value=0.58 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHh
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRL 85 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l 85 (569)
..+++.||+|+|||.+.- .++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997543 333344
No 312
>PRK04195 replication factor C large subunit; Provisional
Probab=94.00 E-value=0.47 Score=51.83 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
.+.+++.||+|+|||.+.-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999997544
No 313
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.98 E-value=0.42 Score=53.32 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=26.9
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+++||||+|.+.... ...+...++..|....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999987543 344555566666666555544
No 314
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.43 Score=52.31 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=26.9
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
.+.+++||||+|.|....+ ..+...++..|+...+++.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999886543 44556677766666555544
No 315
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.2 Score=51.85 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=74.9
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 008345 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (569)
Q Consensus 19 ~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Li 98 (569)
+....+|+..-|++.+-+.|...-..+-+.- ..-.--++++..||+|+|||.+.-
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK-----~h~apfRNilfyGPPGTGKTm~Ar-------------------- 402 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATANTK-----KHQAPFRNILFYGPPGTGKTMFAR-------------------- 402 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhcccc-----cccchhhheeeeCCCCCCchHHHH--------------------
Confidence 3455678888899888887764322110000 000002689999999999997432
Q ss_pred EcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
+++...|+.....+||+--+--... |+--..|+|.-... ..-=++.|||||
T Consensus 403 ----------------elAr~SGlDYA~mTGGDVAPlG~qa--------VTkiH~lFDWakkS-----~rGLllFIDEAD 453 (630)
T KOG0742|consen 403 ----------------ELARHSGLDYAIMTGGDVAPLGAQA--------VTKIHKLFDWAKKS-----RRGLLLFIDEAD 453 (630)
T ss_pred ----------------HHHhhcCCceehhcCCCccccchHH--------HHHHHHHHHHHhhc-----ccceEEEehhhH
Confidence 2233456777777887632211111 22223344444321 111258899999
Q ss_pred ccCCC--------ChHHHHHHHHHhcC-CCCcEEEEEecC
Q 008345 179 CLFGM--------GFAEQLHKILGQLS-ENRQTLLFSATL 209 (569)
Q Consensus 179 ~l~~~--------~f~~~l~~i~~~~~-~~~q~ll~SAT~ 209 (569)
-.+.. .-...++.++-+.. ..+.++|.=||-
T Consensus 454 AFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 454 AFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN 493 (630)
T ss_pred HHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC
Confidence 76521 12334555554443 356788888884
No 316
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.96 E-value=0.16 Score=57.16 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=39.9
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
...-++|+|..|++.+......+..+++..|++...++.|-+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 344689999999999999999999999999999999999888654
No 317
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.16 Score=57.39 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=78.6
Q ss_pred EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 008345 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (569)
Q Consensus 245 ~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T 323 (569)
-+....|.+..+.++.+.+..+.++||.++-......+...|... |.++..+|+++++.+|.....+.++|+.+|+|+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 345567889999999999999999999999888887777777653 7889999999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEE
Q 008345 324 DVAARGIDIPLLDNVI 339 (569)
Q Consensus 324 dv~arGlDip~v~~VI 339 (569)
-.|- =.-++++.++|
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 6542 23456777776
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=0.45 Score=53.43 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=25.6
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...+++||||+|.+.... ...+...+...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876533 334555666656566555544
No 319
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.37 Score=52.28 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...+++||||+|.+....+ ..+...++..|+...++ |.+|
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latt 154 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATT 154 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeC
Confidence 5788999999999876433 34455555555444444 4445
No 320
>PF13173 AAA_14: AAA domain
Probab=93.87 E-value=0.44 Score=41.76 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=24.8
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.-.+|+|||+|.+.+ +...+..+.... .+.++++ |++
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~-tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIIL-TGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEE-Ecc
Confidence 456899999999864 667777777755 3444444 444
No 321
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.79 E-value=0.14 Score=58.97 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
..++|-|++++.. ...++++.|..|||||.+..--+...+..... ...++|+++-|+.-|..+.+.+..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-APWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-CHHHeeeeeccHHHHHHHHHHHHHH
Confidence 3589999999974 34679999999999999866555544433222 2357999999999999888877665
No 322
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.73 E-value=0.4 Score=53.36 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
....+++||||+|.|....+. .+..+++.-+....+||.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeCC
Confidence 346789999999998765443 344555555555655555543
No 323
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.72 E-value=0.86 Score=46.81 Aligned_cols=54 Identities=24% Similarity=0.291 Sum_probs=30.9
Q ss_pred CCeeEEEEeCCCccCC-CChHHHHHHHHHhc------CCCCcEEEEEecCChHHHHHHHhc
Q 008345 167 KSVEYVVFDEADCLFG-MGFAEQLHKILGQL------SENRQTLLFSATLPSALAEFAKAG 220 (569)
Q Consensus 167 ~~l~~iViDEah~l~~-~~f~~~l~~i~~~~------~~~~q~ll~SAT~~~~~~~~~~~~ 220 (569)
.++++||+|=+-++.. ....+++..+.+.+ .+..-++.++||.......-+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 4578889998877653 22334555554432 123347889999755433334433
No 324
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.43 Score=49.19 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHhc--C---CcEEEEcCCCchHHHHHHHH
Q 008345 46 PTPIQRKTMPLILS--G---ADVVAMARTGSGKTAAFLVP 80 (569)
Q Consensus 46 ~t~iQ~~~i~~il~--g---~dvl~~a~TGSGKT~a~lip 80 (569)
++|+|...+..+.. + +-.++.||.|.|||..+..-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 36888888887764 2 24889999999999866533
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.66 E-value=0.16 Score=48.79 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=26.2
Q ss_pred CCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 164 ~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
++-.+-++||+||||.|.+ |-...+.+.+....+.++..|
T Consensus 109 lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred CCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhh
Confidence 3445678999999999875 345556666665555555444
No 326
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.28 Score=46.02 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=59.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
+-.++.||.+||||...+-- ..+.. ..|.++++..|...- +++ ...+.-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r-~~~~~----~~g~~v~vfkp~iD~---------R~~----~~~V~Sr~G~~-------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRR-ARRYK----EAGMKVLVFKPAIDT---------RYG----VGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHH-HHHHH----HcCCeEEEEeccccc---------ccc----cceeeeccCCc--------
Confidence 44688999999999854422 22222 247889999995331 111 22222222222
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~ 194 (569)
.+.++|-.+..+++.+.... ...++++|.||||+=+.+ .....+.++..
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~~~-~~v~~l~~lad 107 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFFDE-ELVYVLNELAD 107 (201)
T ss_pred --ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhCCH-HHHHHHHHHHh
Confidence 24466777888888887632 122388999999987443 23344444444
No 327
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.62 E-value=0.28 Score=55.94 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=24.8
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChH
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~ 212 (569)
...++||||+|++... +...++..+ ...++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999996532 222333333 345678888875543
No 328
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.60 E-value=0.84 Score=46.11 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998653
No 329
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.59 E-value=0.4 Score=54.07 Aligned_cols=150 Identities=19% Similarity=0.197 Sum_probs=88.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 37 AIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 37 ~l~~~g~~~~t~iQ~~~i~~il~g~--dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.+.....+.+..-|.+.+..++..+ -+++.|.-|=|||++..+.+. .+..... ..+++|.+|+.+=+..++.++.
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~--~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG--SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC--CceEEEeCCCHHHHHHHHHHHH
Confidence 3555555666666666777777653 488999999999998877662 3322211 3579999999998888888766
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~ 194 (569)
+-....|++..+........ ...-.....|=+-+|.... . .-+++|+|||=-+- ..-+..++.
T Consensus 283 ~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~----------~-~~DllvVDEAAaIp----lplL~~l~~ 345 (758)
T COG1444 283 KGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ----------E-EADLLVVDEAAAIP----LPLLHKLLR 345 (758)
T ss_pred HhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc----------c-cCCEEEEehhhcCC----hHHHHHHHh
Confidence 64445554432222111000 0000112334455554322 1 15789999996543 233333433
Q ss_pred hcCCCCcEEEEEecCC
Q 008345 195 QLSENRQTLLFSATLP 210 (569)
Q Consensus 195 ~~~~~~q~ll~SAT~~ 210 (569)
. -+.++||.|+.
T Consensus 346 ~----~~rv~~sTTIh 357 (758)
T COG1444 346 R----FPRVLFSTTIH 357 (758)
T ss_pred h----cCceEEEeeec
Confidence 3 35689999973
No 330
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.59 E-value=0.44 Score=49.02 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=29.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
....+++|||+||.|.... ...+..+++.-|+....++.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEECC
Confidence 3567899999999988643 55666667776666655555544
No 331
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.45 Score=49.83 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=28.6
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.....++||||+|.+... -...+...++..|....++++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356789999999997643 3455666666666566556655543
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.47 E-value=0.24 Score=53.40 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=36.1
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 53 ~i~~il~-----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
-+..++. |.-+++.|++|+|||...+.-+. .+.. .+.+++|++-. +-..|+.....+++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~-~~a~----~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAA-RLAA----AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHH-HHHh----cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3445554 34588999999999985543322 2221 35678888854 44556665555554
No 333
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.39 E-value=0.33 Score=50.92 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
|.-+++.|++|+|||...+.-+. .+.. .+.+++|++-. +-..|+.....+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~-~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAA-RLAK----RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH-HHHh----cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 35588999999999985542222 2222 24578888764 33456555555543
No 334
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.54 Score=50.69 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.2
Q ss_pred EEEEcCCCchHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVP 80 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip 80 (569)
+++.||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999876633
No 335
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.34 E-value=0.56 Score=49.68 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.|++|+|||.+.-
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998643
No 336
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.29 E-value=1.6 Score=50.23 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcC-CCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~-~~~q~ll~SAT 208 (569)
..+.+|||||+|.+...+ ...+..+++... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346789999999988642 344555554322 23455554444
No 337
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.24 E-value=0.34 Score=47.50 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
|.-+++.|++|+|||...+--+.+.+. .|.++++++- -+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 466999999999999866544444432 3677888884 344556666666554
No 338
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.87 Score=51.00 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
+...++|||||+|.|.... ...+...+...+... ++++.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t-v~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA-IFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe-EEEEEeC
Confidence 4567899999999887533 333444455544443 3334443
No 339
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.18 E-value=0.66 Score=48.35 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=28.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEe
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SA 207 (569)
.....++||||+|.|.... ...+..+++..|....++++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 3467899999999987543 4556777777665665566653
No 340
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.25 Score=50.65 Aligned_cols=39 Identities=31% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...++||+||||.|... -...+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 56889999999998763 3444555555555555555544
No 341
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.12 E-value=0.8 Score=48.66 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.....++||||+|.+.... ...+...++..++... ++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~-~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAI-FIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeE-EEEEeC
Confidence 4567899999999987532 2334444454444333 334444
No 342
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.02 E-value=0.45 Score=50.39 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=27.6
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
....+++||||+|+|.... ...+...++.-|.... ++++||-+.
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~-fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTV-WLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCe-EEEEECChH
Confidence 3567899999999987543 3455666666555554 444444333
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=0.54 Score=52.51 Aligned_cols=41 Identities=22% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
..++++||||+|.|....|. .+...++..|....+|+ .+|-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECC
Confidence 46789999999998865433 34444455444444444 4453
No 344
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.99 E-value=0.14 Score=49.71 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=16.3
Q ss_pred EEEeccccccCCCCCCCEEEEcC
Q 008345 320 LIVTDVAARGIDIPLLDNVINWD 342 (569)
Q Consensus 320 LV~Tdv~arGlDip~v~~VI~~d 342 (569)
-+.|---+.|..++.+.+++.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 46666678899998876666543
No 345
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.96 E-value=0.69 Score=45.28 Aligned_cols=46 Identities=26% Similarity=0.240 Sum_probs=29.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC---cHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP---TRDLALQ 108 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P---treLa~Q 108 (569)
.|.-+++.|++|+|||...+--+...+.. .|..+++++. ..++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCCCCHHHHHHH
Confidence 45668999999999997554333333332 2667899983 4455444
No 346
>PTZ00293 thymidine kinase; Provisional
Probab=92.94 E-value=0.33 Score=46.52 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
|+-.++.||++||||.-.+- .+.+... .|.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH----cCCceEEEEecc
Confidence 55578899999999975442 2223222 367799999953
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.86 E-value=1.2 Score=41.91 Aligned_cols=145 Identities=16% Similarity=0.179 Sum_probs=79.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH-HHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL-ALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL-a~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~ 137 (569)
....+++...+|.|||.+.+--++..+. .|.+++|+-=-+-- ..--...++.+ .++.+. ..|......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g-----~G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~--~~g~~~~~~- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG-----HGKKVGVVQFIKGAWSTGERNLLEFG---GGVEFH--VMGTGFTWE- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH-----CCCeEEEEEEecCCCccCHHHHHhcC---CCcEEE--ECCCCCccc-
Confidence 4567999999999999988766665543 36677776421110 00001122222 122222 122211000
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh--HHHHHHHHHhcCCCCcEEEEEecCChHHHH
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAE 215 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f--~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (569)
..+.+--+......++...+ .+.-..+++||+||.-...+.++ .+.+..++...|...-+|+..-.+|+++.+
T Consensus 90 ---~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 ---TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred ---CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 00000000111122222222 13345789999999998887775 567778888888887778877778888877
Q ss_pred HHHh
Q 008345 216 FAKA 219 (569)
Q Consensus 216 ~~~~ 219 (569)
.+..
T Consensus 165 ~ADl 168 (191)
T PRK05986 165 AADL 168 (191)
T ss_pred hCch
Confidence 7654
No 348
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.85 E-value=0.26 Score=49.29 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
.++.|||||||+-..--.+-.++.. .....+++|+|+...
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~---P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQ---PPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCccc---CCCCceEEECCCCCC
Confidence 6789999999996322111111121 223468999997743
No 349
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.82 E-value=0.41 Score=48.78 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=43.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 35 FRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 35 ~~~l~~~g~~~~t~iQ~~~i~~il-~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+..+.+.|. +++.|...+..+. .++++++.|+||||||... -.++..+... .++.+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--CCCceEEEECCchhhc
Confidence 444544553 4566666665544 4678999999999999743 3334343321 1356788888888874
No 350
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.48 Score=49.95 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=33.5
Q ss_pred CeeEEEEeCCCccCCC-ChHHHHHHHHHhcCC-CCcEEEEEecCChHHH
Q 008345 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (569)
Q Consensus 168 ~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~-~~q~ll~SAT~~~~~~ 214 (569)
++++++||.++.+... ...+.+-.++..+.. +.|+++.|-.+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999998765 345556666666554 4477777777777654
No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.79 E-value=0.49 Score=48.94 Aligned_cols=43 Identities=26% Similarity=0.192 Sum_probs=30.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
....+++|||+||.|.... ...+..+++.-|.....+|.|.-+
T Consensus 106 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred cCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEECCh
Confidence 4578899999999988643 566666677766666666666553
No 352
>PRK10436 hypothetical protein; Provisional
Probab=92.78 E-value=0.41 Score=51.72 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHh
Q 008345 47 TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRL 85 (569)
Q Consensus 47 t~iQ~~~i~~il~--g~dvl~~a~TGSGKT~a~lip~l~~l 85 (569)
.+.|.+.+..++. +.-+++.||||||||... ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 3556666655544 345889999999999853 3444444
No 353
>PRK06904 replicative DNA helicase; Validated
Probab=92.77 E-value=1.2 Score=48.42 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=57.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhcccCCCeEEEEEcC--CCHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISLLVGG--DSMES 135 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~~l~~~~~~gg--~~~~~ 135 (569)
.|.=+++.|+||.|||...+ -+....... .|..+++++..-. ..|+... +... .++....+..| .+.++
T Consensus 220 ~G~LiiIaarPg~GKTafal-nia~~~a~~---~g~~Vl~fSlEMs-~~ql~~Rlla~~---s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAM-NLCENAAMA---SEKPVLVFSLEMP-AEQIMMRMLASL---SRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CCcEEEEEeCCCCChHHHHH-HHHHHHHHh---cCCeEEEEeccCC-HHHHHHHHHHhh---CCCCHHHhccCCCCCHHH
Confidence 34558889999999998543 333333221 3667888885422 3333332 2222 22222222223 23333
Q ss_pred HH------HHHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC
Q 008345 136 QF------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 136 ~~------~~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~ 183 (569)
+. ..+...+++.|- |+..+.....+.. .....+++||||=.+.+...
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCCC
Confidence 22 223234556663 4444443333211 01125789999988877543
No 354
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.75 E-value=0.81 Score=46.53 Aligned_cols=128 Identities=21% Similarity=0.309 Sum_probs=70.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC--cHHHHHHHHHHHHHhcccCCCeEEE-EEcCCCHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISL-LVGGDSMESQFEE 139 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P--treLa~Q~~~~~~~~~~~~~l~~~~-~~gg~~~~~~~~~ 139 (569)
+++.|..|+|||.... +|.......|.++++.+- -|+=|.. +++.+++..|+.+.. -.|+++-.--+
T Consensus 142 il~vGVNG~GKTTTIa-----KLA~~l~~~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpAaVaf-- 211 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-----KLAKYLKQQGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPAAVAF-- 211 (340)
T ss_pred EEEEecCCCchHhHHH-----HHHHHHHHCCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcHHHHH--
Confidence 6789999999998654 332222235777777663 3444432 344444445566554 23444332222
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCC-----cEEEE-EecCChH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENR-----QTLLF-SATLPSA 212 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~-----q~ll~-SAT~~~~ 212 (569)
+-+.. ....+++++++|=|=||-+. +.-..+..|.+-+.+.. .+++. =||...+
T Consensus 212 ----------------DAi~~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 212 ----------------DAIQA---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred ----------------HHHHH---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 22221 22345667777777776643 35566666666554433 25554 7887665
Q ss_pred HHHHHHh
Q 008345 213 LAEFAKA 219 (569)
Q Consensus 213 ~~~~~~~ 219 (569)
...-++.
T Consensus 273 al~QAk~ 279 (340)
T COG0552 273 ALSQAKI 279 (340)
T ss_pred HHHHHHH
Confidence 4444443
No 355
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.75 E-value=2.2 Score=47.71 Aligned_cols=149 Identities=12% Similarity=0.146 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHh---cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC-
Q 008345 46 PTPIQRKTMPLIL---SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD- 121 (569)
Q Consensus 46 ~t~iQ~~~i~~il---~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~- 121 (569)
|.|.=.+=|..+. ..+-.++.+|-|-|||.+..+.+...+.. .|.+++|.+|...-+.++++.++.+....+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~ 245 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQH 245 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHHHhcc
Confidence 4555444444444 34668899999999998766555433322 367899999999999998887766554211
Q ss_pred -------CeEEEEEcCCC-HHHHH-HHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHH
Q 008345 122 -------LRISLLVGGDS-MESQF-EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (569)
Q Consensus 122 -------l~~~~~~gg~~-~~~~~-~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~ 191 (569)
-.+..+.||.. ..-.. .... +...|..++.+ .+...-..++++|+|||.-+-.. ....+.-
T Consensus 246 ~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~~-~l~aIlP 316 (752)
T PHA03333 246 KPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNPG-ALLSVLP 316 (752)
T ss_pred ccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCHH-HHHHHHH
Confidence 11222223221 00000 0000 01223333322 11223345689999999987653 2223333
Q ss_pred HHHhcCCCCcEEEEEecC
Q 008345 192 ILGQLSENRQTLLFSATL 209 (569)
Q Consensus 192 i~~~~~~~~q~ll~SAT~ 209 (569)
.+.. .+.+++++|.+-
T Consensus 317 ~l~~--~~~k~IiISS~~ 332 (752)
T PHA03333 317 LMAV--KGTKQIHISSPV 332 (752)
T ss_pred HHcc--CCCceEEEeCCC
Confidence 3333 355667777764
No 356
>PRK05973 replicative DNA helicase; Provisional
Probab=92.64 E-value=0.13 Score=50.25 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHCCCCC----------ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEE
Q 008345 27 SLNLSPNVFRAIKRKGYKV----------PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (569)
Q Consensus 27 ~l~l~~~~~~~l~~~g~~~----------~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~ 96 (569)
.++|+..+=+.-.+-||.. +||.. +...-+..|.-+++.|++|+|||...+--+.+... .|.++
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~v 95 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTG 95 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeE
Confidence 4566666655556678863 45522 22233344567899999999999866633333322 36778
Q ss_pred EEEcCcHHHHHHHHHHHHHh
Q 008345 97 LILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~ 116 (569)
+|++-.-. ..|+.+.+..+
T Consensus 96 lyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 96 VFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred EEEEEeCC-HHHHHHHHHHc
Confidence 88875432 34555555554
No 357
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=0.65 Score=47.61 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
....+++|||+||.|... -...+..+++.-|++...+|.|..+
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECCh
Confidence 456789999999998754 3556666677766666556655554
No 358
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.56 E-value=0.76 Score=43.18 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=25.0
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.....+|||||+|.+.... ...+...++..++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCe-EEEEEEC
Confidence 3567899999999987532 344555555544333 3444443
No 359
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.49 E-value=0.51 Score=56.68 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
..|....+..+......+.+++|.++|...+..+...+... ++.+..++|..+..++..+++...+|.++|+|+|.
T Consensus 632 sGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 632 FGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 44554433333333446789999999999999888877653 45677889999999999999999999999999995
Q ss_pred -cccccCCCCCCCEEE
Q 008345 325 -VAARGIDIPLLDNVI 339 (569)
Q Consensus 325 -v~arGlDip~v~~VI 339 (569)
.+...+++.++.++|
T Consensus 712 ~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 712 KLLQSDVKWKDLGLLI 727 (1147)
T ss_pred HHHhCCCCHhhCCEEE
Confidence 455567777888877
No 360
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.41 E-value=1 Score=43.78 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
|.-+++.|++|+|||...+.-+.+.+. .|..+++++.. +.+.++....+.+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEcc-CCHHHHHHHHHHh
Confidence 567899999999999865533333322 25567777742 2233444444433
No 361
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.39 E-value=1.6 Score=46.67 Aligned_cols=39 Identities=28% Similarity=0.191 Sum_probs=25.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.|.-+++.|+||+|||...+--+...... .|..+++++.
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSl 231 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSL 231 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEEC
Confidence 35568899999999997555333222212 3667888883
No 362
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.35 E-value=0.77 Score=52.92 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
...+++||||+|+|.... ...+..++..-|....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 457899999999986433 34455556655555554443
No 363
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.33 E-value=0.2 Score=54.93 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhh
Q 008345 42 GYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLN 86 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~ 86 (569)
+|+ |++||.+.+..+. .|+-.|+.+|||+|||+..+-..+..|.
T Consensus 13 Py~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 13 PYT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 344 9999998876643 5888999999999999988777776654
No 364
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.30 E-value=0.44 Score=47.57 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc-C-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 37 AIKRKGYKVPTPIQRKTMPLILS-G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 37 ~l~~~g~~~~t~iQ~~~i~~il~-g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
.+.+.|| .+.|.+.+..++. . .-+++.|+||||||... ..++..+.. .+.+++.+--..|+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E~ 120 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCcee
Confidence 3555664 4567777765554 2 35889999999999853 334444322 34456666555554
No 365
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=92.26 E-value=0.72 Score=46.79 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=71.1
Q ss_pred HHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHH-HHHHHHc-CCCCEEEECcHHHHHH
Q 008345 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME-SQFEELA-QNPDIIIATPGRLMHH 157 (569)
Q Consensus 80 p~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~-~~~~~l~-~~~~IiV~Tp~rl~~~ 157 (569)
|.+.++.+.....|..+||.+|+++...|+...+++-. ...+++.++..+... +....+. +..+|+|+|. +
T Consensus 292 ~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----I 364 (441)
T COG4098 292 LKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----I 364 (441)
T ss_pred HHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCccHHHHHHHHHcCceEEEEEee-----h
Confidence 34555555445567889999999999999999885532 345556666655433 2223333 5678999993 4
Q ss_pred HhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc
Q 008345 158 LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (569)
Q Consensus 158 l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~ 196 (569)
+++ .+.+.++++.|++-.|+++.. +.+..|-.+.
T Consensus 365 LER--GVTfp~vdV~Vlgaeh~vfTe---saLVQIaGRv 398 (441)
T COG4098 365 LER--GVTFPNVDVFVLGAEHRVFTE---SALVQIAGRV 398 (441)
T ss_pred hhc--ccccccceEEEecCCcccccH---HHHHHHhhhc
Confidence 443 577899999999999998753 4555555443
No 366
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.22 E-value=0.22 Score=48.41 Aligned_cols=131 Identities=20% Similarity=0.190 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc-------CCCeEEEEEcCCC
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------TDLRISLLVGGDS 132 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~-------~~l~~~~~~gg~~ 132 (569)
|.-+++.|++|||||...+--+.+.+... |.++++++-.. -..++.+.++.++-. -.+.+.-......
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~ee-~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFEE-PPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESSS--HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEecC-CHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 46799999999999986664444444431 56688888432 234444555544310 0111111111000
Q ss_pred HHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC----CChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG----MGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 133 ~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~----~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
. .. -..++.+...+... +.-...+.+|||-...+.. ..+...+..+...+.....+.++++.
T Consensus 94 ~----------~~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 G----------WS--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp T-----------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred c----------cc--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 0 00 11222333322220 1111237899998887722 22445566666666666667777777
Q ss_pred C
Q 008345 209 L 209 (569)
Q Consensus 209 ~ 209 (569)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 4
No 367
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.3 Score=56.67 Aligned_cols=143 Identities=22% Similarity=0.246 Sum_probs=81.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCC-CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYK-VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~-~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
.-+|++.|....++..|+++-+. -++|-+..-+ .|.--+.++.+||.|+|||+..- .|.......+.++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-----aLa~~~s~~~~kis--- 331 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-----ALAAACSRGNRKIS--- 331 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH-----hhhhhhcccccccc---
Confidence 44899999999999999887443 2233222222 11224669999999999998543 22222211111111
Q ss_pred CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
++..-+ .+-. .--|+..+|=+.++.+ ...-.....|.|||.|-+
T Consensus 332 -----------ffmrkg------------aD~l-----------skwvgEaERqlrllFe--eA~k~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 332 -----------FFMRKG------------ADCL-----------SKWVGEAERQLRLLFE--EAQKTQPSIIFFDEIDGL 375 (1080)
T ss_pred -----------hhhhcC------------chhh-----------ccccCcHHHHHHHHHH--HHhccCceEEeccccccc
Confidence 011000 0000 0115666666666654 233345678999999954
Q ss_pred CCC----------ChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 181 FGM----------GFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 181 ~~~----------~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.-. .....+..++..++...|+++.+||.
T Consensus 376 apvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 376 APVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred cccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 421 12334445566677788999999995
No 368
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.20 E-value=0.63 Score=51.50 Aligned_cols=87 Identities=22% Similarity=0.281 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCh----hhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc-c
Q 008345 253 AALLYMIREHISSDQQTLIFVSTK----HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA-A 327 (569)
Q Consensus 253 ~~L~~ll~~~~~~~~~~IIF~~t~----~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~-a 327 (569)
-+++.++. .+..+.++.+-++|. .|.+.+...|...|+.+..+.|.+...+|+.+++...+|+++|+|+|-++ .
T Consensus 299 VA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 299 VALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 34444443 346789999999996 45556677777889999999999999999999999999999999999655 4
Q ss_pred ccCCCCCCCEEEE
Q 008345 328 RGIDIPLLDNVIN 340 (569)
Q Consensus 328 rGlDip~v~~VI~ 340 (569)
..+++.++-+||.
T Consensus 378 d~V~F~~LgLVIi 390 (677)
T COG1200 378 DKVEFHNLGLVII 390 (677)
T ss_pred cceeecceeEEEE
Confidence 7899999988884
No 369
>PHA00729 NTP-binding motif containing protein
Probab=92.17 E-value=1.5 Score=42.55 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999997554
No 370
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.12 E-value=0.58 Score=46.50 Aligned_cols=138 Identities=26% Similarity=0.290 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt---reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~ 136 (569)
|.=+++.|+||.|||...+--+...+.. .+..+++++.. .+++..+..... ++....+..|.-.+..
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~----~~~~vly~SlEm~~~~l~~R~la~~s------~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN----GGYPVLYFSLEMSEEELAARLLARLS------GVPYNKIRSGDLSDEE 88 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT----TSSEEEEEESSS-HHHHHHHHHHHHH------TSTHHHHHCCGCHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHHHhh------cchhhhhhccccCHHH
Confidence 3458899999999998666444444333 25779999964 444443322221 1111111122222222
Q ss_pred HH-------HHcCCCCEEEECc----HHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC----ChHHHHHHHHHhcC----
Q 008345 137 FE-------ELAQNPDIIIATP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----GFAEQLHKILGQLS---- 197 (569)
Q Consensus 137 ~~-------~l~~~~~IiV~Tp----~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~----~f~~~l~~i~~~~~---- 197 (569)
+. .+...+-.+..+| +.+...+..... ....+++||||=.|.+... +....+..+...+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 2223332334444 345544443211 1267899999999987753 23344444433332
Q ss_pred -CCCcEEEEEec
Q 008345 198 -ENRQTLLFSAT 208 (569)
Q Consensus 198 -~~~q~ll~SAT 208 (569)
.+..+++.|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 14556665554
No 371
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.11 E-value=1.2 Score=48.34 Aligned_cols=146 Identities=12% Similarity=0.162 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHhc------C----CcEEEEcCCCchHHHHHH-HHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILS------G----ADVVAMARTGSGKTAAFL-VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~------g----~dvl~~a~TGSGKT~a~l-ip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (569)
.+-|+|.-++-.+.. | +.+++.-|-|-|||.... +.+...+..+ ..|....|++|+.+-+.+.+..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 488999999988873 2 236666667779997554 3333333333 45778999999999999988877
Q ss_pred HHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcH---HHHHHHhh-cCCCCCCCeeEEEEeCCCccCCCChHHHH
Q 008345 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG---RLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (569)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~---rl~~~l~~-~~~~~l~~l~~iViDEah~l~~~~f~~~l 189 (569)
+....... +.. .......+....+.+ ..+..+.. ....+-.+..+.|+||.|.....+ ..+
T Consensus 139 r~mv~~~~----------~l~---~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 139 RDMVKRDD----------DLR---DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHhCc----------chh---hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 76543221 000 001111111111111 11111111 123445567889999999977653 444
Q ss_pred HHHHHhcC--CCCcEEEEEe
Q 008345 190 HKILGQLS--ENRQTLLFSA 207 (569)
Q Consensus 190 ~~i~~~~~--~~~q~ll~SA 207 (569)
..+...+. ++.+++..|.
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 44444432 3556666665
No 372
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.11 E-value=2.2 Score=44.15 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHhcCCc------EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC-----cHHHHHHHHHHHH
Q 008345 46 PTPIQRKTMPLILSGAD------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-----TRDLALQTLKFTK 114 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~d------vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P-----treLa~Q~~~~~~ 114 (569)
.+..|...+..++...+ +++.|.+|||||.+-. .+..+. +...+++.+ .+-|-.++.....
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-----~~l~~~---n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-----QLLRKL---NLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-----HHHhhc---CCcceeeehHHhccHHHHHHHHHHHhc
Confidence 57889999988887654 4899999999998543 333332 234566665 2333333322221
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCC--hHHHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK 191 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~--f~~~l~~ 191 (569)
.+. ..|...+..+..+ . .+...+...+.. ..+.--++|+|-||.+-+++ ....+-.
T Consensus 82 -~~d---------~dg~~~~~~~en~--------~---d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 82 -LAD---------KDGDKVEGDAENF--------S---DFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred -cCC---------CchhhhhhHHHHH--------H---HHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 011 1111111111111 1 122222221111 11345589999999999887 2334444
Q ss_pred HHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeee
Q 008345 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (569)
Q Consensus 192 i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~ 229 (569)
+...++...-.+.+|+++++.. ...+.+..++..+.+
T Consensus 141 L~el~~~~~i~iils~~~~e~~-y~~n~g~~~i~~l~f 177 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCEKQ-YLINTGTLEIVVLHF 177 (438)
T ss_pred HHHHhCCCceEEEEeccccHHH-hhcccCCCCceEEec
Confidence 4444555556788999987642 122234444444433
No 373
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.10 E-value=0.49 Score=50.15 Aligned_cols=55 Identities=13% Similarity=0.098 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHH---CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKR---KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~---~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
...-+|+++|--+...+.|.+ ..+..|.-++...+ ...+.+++.||+|+|||...
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 345577777665555555543 23333332222221 23577999999999999854
No 374
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.75 Score=50.74 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=25.6
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...+++||||+|.|....+ ..+...+...|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 4678999999999876433 34555556655555555544
No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.07 E-value=0.25 Score=52.84 Aligned_cols=39 Identities=33% Similarity=0.513 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHhh
Q 008345 47 TPIQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLN 86 (569)
Q Consensus 47 t~iQ~~~i~~il~g~d--vl~~a~TGSGKT~a~lip~l~~l~ 86 (569)
++.|.+.+..++.... +++.||||||||.. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 5778888877776544 78899999999975 444555544
No 376
>PF14516 AAA_35: AAA-like domain
Probab=92.01 E-value=1.4 Score=45.54 Aligned_cols=129 Identities=23% Similarity=0.337 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH----H--HHHHHH-HHHHhccc
Q 008345 48 PIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD----L--ALQTLK-FTKELGRY 119 (569)
Q Consensus 48 ~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre----L--a~Q~~~-~~~~~~~~ 119 (569)
|+.++++..+.. |.-+.+.||-.+|||.... -+.+.+.. .|.+++++.-... + ..+... .+..+++.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~-~l~~~l~~----~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSLLL-RLLERLQQ----QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHHHH-HHHHHHHH----CCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 489999999888 8999999999999997533 33444433 3666766653220 0 112222 23344444
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHh
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQ 195 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~ 195 (569)
.++. ....+.+... ++.+.++...+.+.=-...+.-=+++|||+|.+++. .+...+-..++.
T Consensus 93 L~l~-------~~l~~~w~~~-------~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~ 155 (331)
T PF14516_consen 93 LKLD-------EKLDEYWDEE-------IGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRS 155 (331)
T ss_pred cCCC-------hhHHHHHHHh-------cCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHH
Confidence 4443 1223333211 334445544443310001122337999999999974 333444444444
No 377
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.00 E-value=1.6 Score=51.58 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=36.6
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
.--+||||++|.+.+......+..++...|.+..+++.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 34579999999998777777889999999999988888887544
No 378
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.95 E-value=0.51 Score=52.54 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=29.1
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHh
Q 008345 38 IKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRL 85 (569)
Q Consensus 38 l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l 85 (569)
|.++|| .|.|.+.+..++.. .-+++.||||||||... ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 455565 46677777665543 34789999999999863 3455444
No 379
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.94 E-value=1.3 Score=45.14 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=25.4
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...+|++||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999998643 2445666666666666555544
No 380
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=1.3 Score=48.93 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=26.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
.....++||||+|++.... ...+...+...|....+++.+
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999987543 445566666655555555444
No 381
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.69 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=27.0
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
....+++||||+|.|.... ...+...+...|....+|+ .+|-
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~ 158 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTE 158 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCC
Confidence 3568899999999887543 3455666666555554444 3453
No 382
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.79 E-value=0.72 Score=51.12 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=24.9
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
...+++||||+|.|.... ...+...+...|....+++ .+|-+
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL-~Tt~~ 159 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIF-ATTEF 159 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEE-ECCCh
Confidence 356889999999976432 3445555555554443343 34433
No 383
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.77 E-value=2.1 Score=39.65 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=43.1
Q ss_pred CCCeeEEEEeCCCccCCCCh--HHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHh
Q 008345 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f--~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (569)
-..+++||+||+-...+.++ .+.+..++...|+..-+++..-.+|+.+.+.+..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35789999999998777664 4567788888888888888888888888777654
No 384
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.77 E-value=1.9 Score=48.03 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
....+++||||+|.|.... ...+...+...|....+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3568899999999987653 334555666655555444444 433
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.75 E-value=0.62 Score=50.80 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcC-C-cEEEEcCCCchHHHHHHHHHHHHh
Q 008345 37 AIKRKGYKVPTPIQRKTMPLILSG-A-DVVAMARTGSGKTAAFLVPMLQRL 85 (569)
Q Consensus 37 ~l~~~g~~~~t~iQ~~~i~~il~g-~-dvl~~a~TGSGKT~a~lip~l~~l 85 (569)
.|.++|| .|-|.+.+..++.. + -+++.||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3445564 56677777666554 3 3789999999999853 2334443
No 386
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.75 E-value=1.5 Score=47.88 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPM 81 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~ 81 (569)
.+++.||.|+|||.++.+-+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765433
No 387
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=1 Score=50.40 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.9
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+++||||+|.+.... ...+...+...|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999987533 334555555555444444433
No 388
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.67 E-value=0.79 Score=45.63 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
|.-+++.|++|+|||...+--+.+.+. .|.++++++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEe
Confidence 456899999999999865533333222 3667888884
No 389
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.55 E-value=1.2 Score=51.29 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=27.7
Q ss_pred eeEEEEeCCCccCCCCh----HHHHHHHHHhcCCCCcEEEEEecCChHH
Q 008345 169 VEYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSAL 213 (569)
Q Consensus 169 l~~iViDEah~l~~~~f----~~~l~~i~~~~~~~~q~ll~SAT~~~~~ 213 (569)
-.+++|||+|.+...+- ...+..++..+-....+.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999875432 2344445554444455667777755543
No 390
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.54 E-value=0.13 Score=54.33 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=37.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
++++.|+||||||.++++|-+-.. +..++|+-|--|+...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999998876432 235899999999998777665543
No 391
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.52 E-value=0.44 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhh
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLN 86 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~ 86 (569)
.+.-+++.||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999853 33444443
No 392
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.50 E-value=1.4 Score=44.45 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=25.2
Q ss_pred CeeEEEEeCCCccCCCChH--HHHHHHHHhcCCCC--cEEEEEec
Q 008345 168 SVEYVVFDEADCLFGMGFA--EQLHKILGQLSENR--QTLLFSAT 208 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~--~~l~~i~~~~~~~~--q~ll~SAT 208 (569)
.+.++||||.|.++.-... ..+...++.+.+.. .++++ +|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 5789999999998865433 33445556665543 33433 55
No 393
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.43 E-value=0.2 Score=54.53 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=39.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
.++++.|+||||||..+++|.+-. . .+ .++|.-|--||...+....++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~---~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y---PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c---cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999997632 2 23 58999999999888777666654
No 394
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.19 E-value=0.84 Score=49.99 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=14.2
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.||+|+|||.+..
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999998765
No 395
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.18 E-value=0.65 Score=49.33 Aligned_cols=141 Identities=17% Similarity=0.101 Sum_probs=80.0
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 008345 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (569)
Q Consensus 34 ~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (569)
+++.|+++ +-.+-..|+++.=..-.|+. .+.|=.|||||.....-+.+ -++.++..+++|-+=|+.|+.|+...+
T Consensus 152 ~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~---lh~knPd~~I~~Tfftk~L~s~~r~lv 226 (660)
T COG3972 152 LLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE---LHSKNPDSRIAFTFFTKILASTMRTLV 226 (660)
T ss_pred HHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH---HhcCCCCceEEEEeehHHHHHHHHHHH
Confidence 44444432 22344557666544445555 67788899999854433322 244567789999999999999998877
Q ss_pred HHhccc--------CCCeEEEEEcCCCHHHHHH---HHcCCCCEEEEC-----cHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 114 KELGRY--------TDLRISLLVGGDSMESQFE---ELAQNPDIIIAT-----PGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 114 ~~~~~~--------~~l~~~~~~gg~~~~~~~~---~l~~~~~IiV~T-----p~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
.+|... ..+.++--.||.+.+.... .......+-++- .+..-.++... -+..-+++|.|||+
T Consensus 227 ~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~--~~~~~yD~ilIDE~ 304 (660)
T COG3972 227 PEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADI--NNKKAYDYILIDES 304 (660)
T ss_pred HHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhh--hccccccEEEeccc
Confidence 766421 1233444456655443322 222222222221 12223333321 23567899999999
Q ss_pred CccC
Q 008345 178 DCLF 181 (569)
Q Consensus 178 h~l~ 181 (569)
+...
T Consensus 305 QDFP 308 (660)
T COG3972 305 QDFP 308 (660)
T ss_pred ccCC
Confidence 9843
No 396
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.15 E-value=1.1 Score=51.65 Aligned_cols=54 Identities=19% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
..-+|++++--...++.+.+. .+..|.-++... +..++.+++.||+|+|||...
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHHH
Confidence 345788887555555555432 222222111111 123577999999999999753
No 397
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.96 E-value=1.8 Score=48.20 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=23.7
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.....++||||+|.|....+ ..+...+...|... ++++.+|
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp~~~-ifIlatt 157 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPPAHV-IFILATT 157 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCCCCe-EEEEEeC
Confidence 45688999999999865432 23444444433333 3333444
No 398
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=90.94 E-value=0.61 Score=50.89 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
.+.+++.||+|+|||...
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999853
No 399
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.89 E-value=0.47 Score=54.67 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||+..-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998543
No 400
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.85 E-value=0.25 Score=55.09 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=45.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEE
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV 128 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~ 128 (569)
.++++.||||||||..|++|-+-.. +..++|+=|--|+...+....++.+ .+|.++-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~G----~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQG----QKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHCC----CeEEEEe
Confidence 4689999999999999999987653 2348999999999998888777654 4555443
No 401
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.81 E-value=0.74 Score=43.28 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHH
Q 008345 38 IKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 38 l~~~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~ 77 (569)
|.+.| .+++-|.+.+..... |..+++.|+||||||...
T Consensus 4 l~~~g--~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQG--TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcC--CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34444 456778888766554 788999999999999854
No 402
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.76 E-value=0.59 Score=49.53 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 569999999999998543
No 403
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.75 E-value=2.5 Score=41.22 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
|.-+++.|++|+|||.....-+...+. .|.+++++.-... ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 456889999999999865533333322 3667888875433 234445455543
No 404
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=1.1 Score=49.33 Aligned_cols=67 Identities=21% Similarity=0.391 Sum_probs=53.9
Q ss_pred EEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-----cccccc-CCCCCCCE
Q 008345 269 TLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----DVAARG-IDIPLLDN 337 (569)
Q Consensus 269 ~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T-----dv~arG-lDip~v~~ 337 (569)
+||+++|++.+..+++.+... ++.+..++|+++...+... ++.| .+|+|+| |.+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998877643 4667899999887766544 4446 9999999 467777 88888888
Q ss_pred EE
Q 008345 338 VI 339 (569)
Q Consensus 338 VI 339 (569)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 87
No 405
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.61 E-value=3 Score=43.10 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=62.8
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH-HHHHHH---HHHHhccc-CCCeEEEEEcCCCHHHHHH
Q 008345 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL-ALQTLK---FTKELGRY-TDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 64 l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL-a~Q~~~---~~~~~~~~-~~l~~~~~~gg~~~~~~~~ 138 (569)
++.++.|+|||.+....++....... .+..+++. ||..- ...+.. .+..+... ..+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII----- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE-----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE-----
Confidence 47889999999988777776665542 12455555 55544 443222 33333322 12222111111000
Q ss_pred HHcCCCCEEEECcHH--HHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC--ChHHH
Q 008345 139 ELAQNPDIIIATPGR--LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL--PSALA 214 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~r--l~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~--~~~~~ 214 (569)
+.++..|.+.+-+. -..-+. -..++++++||+-.+.+..+...+........ ....+++|.|+ .....
T Consensus 73 -~~nG~~i~~~~~~~~~~~~~~~------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 73 -LPNGSRIQFRGADSPDSGDNIR------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp -ETTS-EEEEES-----SHHHHH------TS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred -ecCceEEEEecccccccccccc------ccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 03445555555321 111111 24678999999988776555554444433332 22222555543 33344
Q ss_pred HHHHhcCCCC
Q 008345 215 EFAKAGLRDP 224 (569)
Q Consensus 215 ~~~~~~l~~~ 224 (569)
.+......+.
T Consensus 145 ~~~~~~~~~~ 154 (384)
T PF03237_consen 145 EIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHCTS
T ss_pred eeeehhhcCC
Confidence 4555444433
No 406
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=1.7 Score=48.90 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
+...+++||||+|.+.... ...+...+...|.... ++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeE-EEEEeC
Confidence 4578899999999986533 4455666666555443 444454
No 407
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.48 E-value=0.81 Score=50.99 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPM 81 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~ 81 (569)
.+|+.||.|+|||.+..+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47899999999998766443
No 408
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.45 E-value=0.77 Score=49.85 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.5
Q ss_pred EEEEcCCCchHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLV 79 (569)
Q Consensus 63 vl~~a~TGSGKT~a~li 79 (569)
++++||+|+|||....+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 69999999999986653
No 409
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.43 E-value=0.65 Score=43.42 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=26.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
-.++++++.|++|+|||..+.. +...+.. .|..++++ +..+|...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~----~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIR----KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHH----TT--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhcc----CCcceeEe-ecCceecc
Confidence 3468899999999999986543 3333443 35666664 55566554
No 410
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.41 E-value=1.9 Score=46.35 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|+||+|||...+--+...... .|..+++++..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlE 233 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLE 233 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCc
Confidence 4558899999999997554333322222 35678888753
No 411
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.35 E-value=1.7 Score=47.80 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=27.5
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
.....++||||+|.|.... ...+...+...|....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3568899999999987543 445566666666666555544
No 412
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.31 E-value=0.21 Score=48.18 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=25.7
Q ss_pred eEEEEeCCCccC-C----CChHHHHHHHHHhcCC-CCcEEEEEecC
Q 008345 170 EYVVFDEADCLF-G----MGFAEQLHKILGQLSE-NRQTLLFSATL 209 (569)
Q Consensus 170 ~~iViDEah~l~-~----~~f~~~l~~i~~~~~~-~~q~ll~SAT~ 209 (569)
-+|||||+|.+. . ..+...+..++..... ....+.++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999998 2 2356667777666333 33456677764
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.30 E-value=2.1 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=18.2
Q ss_pred HHHHHhcC---CcEEEEcCCCchHHHHH
Q 008345 53 TMPLILSG---ADVVAMARTGSGKTAAF 77 (569)
Q Consensus 53 ~i~~il~g---~dvl~~a~TGSGKT~a~ 77 (569)
.++.+... +++++.|++|||||..+
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHH
Confidence 34454443 57899999999999843
No 414
>PRK08840 replicative DNA helicase; Provisional
Probab=90.29 E-value=2.8 Score=45.41 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHhcccC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYT 120 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~-~~~~~~~~ 120 (569)
|+.+.++.--+.+.-+..|.=+++.|+||.|||+..+--+. ..... .|..++|++..-. ..|+... +...+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~-~~a~~---~~~~v~~fSlEMs-~~ql~~Rlla~~s--- 270 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCE-NAAMD---QDKPVLIFSLEMP-AEQLMMRMLASLS--- 270 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHH-HHHHh---CCCeEEEEeccCC-HHHHHHHHHHhhC---
Confidence 33333333333333333455588899999999986542222 32211 3667888885422 3333332 22221
Q ss_pred CCeEEEE-EcCCCHHHHHH------HHcCCCCEEEE-C----cHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 121 DLRISLL-VGGDSMESQFE------ELAQNPDIIIA-T----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 121 ~l~~~~~-~gg~~~~~~~~------~l~~~~~IiV~-T----p~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
++....+ .|..+.+++.. .+.....+.|- + ...+.....+.. .....+++||||=.|.+.
T Consensus 271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 2222112 22333333322 22233445553 2 233333332211 111247899999888775
No 415
>PRK13764 ATPase; Provisional
Probab=90.29 E-value=0.44 Score=52.90 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
.++.+++.|+||||||.. +..++..+.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~----~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD----MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh----CCCEEEEECCCccc
Confidence 367899999999999974 3445545432 34445456556666
No 416
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.20 E-value=0.7 Score=48.46 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
+..+++.||||||||.. +-.++..+.... ++.+++.+-...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~--~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY--PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC--CCceEEEEecCchh
Confidence 44689999999999974 344555544321 23456665555454
No 417
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.19 E-value=0.18 Score=61.07 Aligned_cols=94 Identities=28% Similarity=0.373 Sum_probs=74.8
Q ss_pred cEEEEEcChhhHHHHHHHHHHCC-CCceeecCCCCH-----------HHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 268 QTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQ-----------DARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 268 ~~IIF~~t~~~~~~l~~~L~~~~-~~~~~i~g~l~~-----------~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
-.|+|++-...+....+.+.+.. ..+..+.|.+.+ ..+..++..|+..++++|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899998888888777776642 223334443221 125678899999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCC
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAG 361 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g 361 (569)
+.|+.++.|.....|+|..||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 418
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=90.18 E-value=18 Score=40.44 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHHHhcC-CCCcEEEEEcChhhHHHHHHHHHHCCCCc------eeecCCCCHHHHHHHHHHHh----cCC
Q 008345 248 QEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEP------SVCYGDMDQDARKIHVSRFR----ARK 316 (569)
Q Consensus 248 ~~~k~~~L~~ll~~~~~-~~~~~IIF~~t~~~~~~l~~~L~~~~~~~------~~i~g~l~~~~R~~~l~~F~----~g~ 316 (569)
..+-...|-..+..... -.+.+++|+++......+.......|+-. .+++...+. -..+++.|. .|.
T Consensus 610 s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 610 SPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGR 687 (821)
T ss_pred ChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCC
Confidence 34444455444443221 13789999999999888888887665421 112222111 344556664 344
Q ss_pred ceEEEEe--ccccccCCCCC--CCEEEEcCCCCC--------------------------------hhHHHHHhhccccC
Q 008345 317 TMFLIVT--DVAARGIDIPL--LDNVINWDFPPK--------------------------------PKIFVHRVGRAARA 360 (569)
Q Consensus 317 ~~ILV~T--dv~arGlDip~--v~~VI~~d~p~s--------------------------------~~~~~qrvGR~gR~ 360 (569)
-.+|++. .-+++|||+.+ ...||..++|.. .+..-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566544 77899999986 566777776632 12237889999998
Q ss_pred CCccEEEEEecc
Q 008345 361 GRTGTAFSFVTS 372 (569)
Q Consensus 361 g~~G~~i~~v~~ 372 (569)
-++--++.+++.
T Consensus 768 ~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 768 RKDYASIYLLDK 779 (821)
T ss_pred hccceeEEEehh
Confidence 666556666554
No 419
>PRK09087 hypothetical protein; Validated
Probab=90.17 E-value=1.1 Score=43.55 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.1
Q ss_pred eEEEEeCCCccCCCChHHHHHHHHHhcCC-CCcEEEEEecCChH
Q 008345 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (569)
Q Consensus 170 ~~iViDEah~l~~~~f~~~l~~i~~~~~~-~~q~ll~SAT~~~~ 212 (569)
+++++|++|.+.. -...+-.++..+.. ++++++.|.|.|+.
T Consensus 89 ~~l~iDDi~~~~~--~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGGF--DETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCCC--CHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 3799999997642 24556777766655 44444444444443
No 420
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.04 E-value=0.56 Score=48.62 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=30.4
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+..++++++.|+||||||... -.++..+ ....+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHccc-----CCCCCEEEECCCcccc
Confidence 445789999999999999743 2222222 1345678888888874
No 421
>CHL00176 ftsH cell division protein; Validated
Probab=90.01 E-value=1 Score=50.63 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998543
No 422
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.95 E-value=2.1 Score=46.30 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
....+|||||+|.+.... ...+...+...+....+++
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 467899999999986532 3445555565444443343
No 423
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.94 E-value=3 Score=42.80 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=27.8
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...+++|||+||.|.... ...+..+++..| ...+++.|..
T Consensus 123 ~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 578999999999986543 556667777766 5555554443
No 424
>PRK05748 replicative DNA helicase; Provisional
Probab=89.89 E-value=2.4 Score=45.89 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
|.-+++.|+||+|||...+ -+...... ..|..+++++.
T Consensus 203 G~livIaarpg~GKT~~al-~ia~~~a~---~~g~~v~~fSl 240 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFAL-NIAQNVAT---KTDKNVAIFSL 240 (448)
T ss_pred CceEEEEeCCCCCchHHHH-HHHHHHHH---hCCCeEEEEeC
Confidence 4558899999999997554 33333221 13667888874
No 425
>PRK08506 replicative DNA helicase; Provisional
Probab=89.88 E-value=1.3 Score=48.24 Aligned_cols=112 Identities=17% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEE-EcCCCHHHHH-
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL-VGGDSMESQF- 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~-~gg~~~~~~~- 137 (569)
|.-+++.|+||.|||...+--+. .+.. .|..+++++..- =..|+...+-.. ..++....+ .|..+.+++.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~-~~~~----~g~~V~~fSlEM-s~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMAL-KALN----QDKGVAFFSLEM-PAEQLMLRMLSA--KTSIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHH-HHHh----cCCcEEEEeCcC-CHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHH
Confidence 44588999999999975553333 3322 366788887542 133333322111 112222112 2222333221
Q ss_pred -----HHHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 138 -----~~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
..+.. ..+.|- |+..+...+..... ....+++||||=.+.+.
T Consensus 264 ~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 264 LSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 12223 345443 33344433332111 12357899999988775
No 426
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.73 E-value=0.29 Score=50.11 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=28.9
Q ss_pred CCCCCCCCHHHHHHHHHCC-CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 24 GFESLNLSPNVFRAIKRKG-YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g-~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
+|.+.|=-+.+..+|++.= +.--+|-.-.--+.+..-+.+++.||+|+|||..+-
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 4566654455555554421 111122211111122223679999999999998544
No 427
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.72 E-value=2.2 Score=48.06 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPM 81 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~ 81 (569)
..+++.|+.|+|||.+....+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357999999999998765333
No 428
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=3.5 Score=44.47 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHH----HHhcC--------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCe
Q 008345 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMP----LILSG--------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (569)
Q Consensus 27 ~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~----~il~g--------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~ 94 (569)
.+|.+++-+......|.-.-.|.=.+.+. .+.+- ..+++.||.|||||+.+. .+...+ .-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S--~FP 565 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSS--DFP 565 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhc--CCC
Confidence 45788888888877776644444444432 22111 359999999999998554 332222 234
Q ss_pred EEEEEcCc
Q 008345 95 RALILSPT 102 (569)
Q Consensus 95 ~~Lil~Pt 102 (569)
-+=|++|.
T Consensus 566 FvKiiSpe 573 (744)
T KOG0741|consen 566 FVKIISPE 573 (744)
T ss_pred eEEEeChH
Confidence 56677774
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.58 E-value=2.4 Score=44.64 Aligned_cols=130 Identities=19% Similarity=0.220 Sum_probs=77.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc-Cc-HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-PT-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~-Pt-reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
++..|=-|||||.+.. +|..+....|.++++++ -+ |.=|. ++++.++...++.+-....+.+.-+-
T Consensus 103 ImmvGLQGsGKTTt~~-----KLA~~lkk~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~Pv~I---- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAG-----KLAKYLKKKGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKDPVEI---- 170 (451)
T ss_pred EEEEeccCCChHhHHH-----HHHHHHHHcCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCCHHHH----
Confidence 6778999999998765 22222112355565555 33 33333 45666666666665444222221111
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHh
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (569)
+. .. +.. +....++++|+|=|-|+- +...-..+.+|-..+.+.--++..=|+........++.
T Consensus 171 --------ak-~a-l~~------ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 171 --------AK-AA-LEK------AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred --------HH-HH-HHH------HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 10 11 111 223456788999888765 34466778888888877777888888888887777776
Q ss_pred c
Q 008345 220 G 220 (569)
Q Consensus 220 ~ 220 (569)
+
T Consensus 235 F 235 (451)
T COG0541 235 F 235 (451)
T ss_pred H
Confidence 5
No 430
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.52 E-value=1.9 Score=38.71 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=29.5
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
..+.+++++||--.-++......+.+.+..+. .+++++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEEC
Confidence 34567899999998888877888888887762 35555544
No 431
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.35 E-value=3.4 Score=47.64 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.||+|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999998644
No 432
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.27 E-value=1.8 Score=50.84 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-c
Q 008345 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-D 324 (569)
Q Consensus 250 ~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T-d 324 (569)
.|....++..-.....+.++.|.|+|.=-++.-.+.|.+ ..+.+..+..--+..+...+++...+|+++|+|+| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 466666676666667889999999997666665555554 46667777777788899999999999999999999 7
Q ss_pred cccccCCCCCCCEEE
Q 008345 325 VAARGIDIPLLDNVI 339 (569)
Q Consensus 325 v~arGlDip~v~~VI 339 (569)
.+..++-+.++-++|
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 888999999999988
No 433
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=89.24 E-value=2.5 Score=43.90 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.||.|+|||.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997554
No 434
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.14 E-value=5 Score=41.97 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhc-CCCCcEEEEEecCChH
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSA 212 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~ 212 (569)
+...++.|||.|-. +.+-.--+..++..+ ..+.-++..|-++|..
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 34568999999853 222233344444443 3456677777777765
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.31 Score=49.02 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
..++++.||||||||+.+.
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 4579999999999998554
No 436
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.03 E-value=0.49 Score=52.73 Aligned_cols=169 Identities=19% Similarity=0.193 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhcCCc----------EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGAD----------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~d----------vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.++..|-+++-..-+.++ +++-...|-||-....--|++...+. .+++|+++-+..|-......+.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG----RKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG----RKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc----cceeEEEEeccccccchhhchh
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcC-CCCEEEECcHHH--------------HHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRL--------------MHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tp~rl--------------~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
..+ .+++.+..+.--.--.-.-..-.+ .-.|+++|+..| ++.+.. .+.-+.=++|||||||+
T Consensus 340 Dig-A~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllq--W~Ge~feGvIvfDECHk 416 (1300)
T KOG1513|consen 340 DIG-ATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQ--WCGEDFEGVIVFDECHK 416 (1300)
T ss_pred hcC-CCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHH--HhhhccceeEEehhhhh
Q ss_pred cCCCC---------hHHHHHHHHHhcCCCCcEEEEEecC---ChHHHHHHHhcC
Q 008345 180 LFGMG---------FAEQLHKILGQLSENRQTLLFSATL---PSALAEFAKAGL 221 (569)
Q Consensus 180 l~~~~---------f~~~l~~i~~~~~~~~q~ll~SAT~---~~~~~~~~~~~l 221 (569)
.-+.. ....+..+...+| +.+++.-|||= |+.+....+.++
T Consensus 417 AKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 417 AKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRLGL 469 (1300)
T ss_pred hcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhhcc
No 437
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.02 E-value=0.75 Score=47.52 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998654
No 438
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.02 E-value=1.3 Score=45.86 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=30.5
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
+..+++++++|+||||||.. +-.++..+. ...+++.+=-+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip-----~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP-----AIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC-----CCCeEEEecCCCcccc
Confidence 34578999999999999974 333333332 2457777777777643
No 439
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.99 E-value=6.1 Score=44.79 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH----HcCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.|.++||.++|+..+..+.+.+.+. ++.+..++|+....+.... ..+..+|+||| +.+. ..+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~--rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc--CCeeeC
Confidence 4788999999999999988888765 4788888888665433222 23568899999 3333 468899
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCC--CCcEEEEEecCChHHH
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALA 214 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~--~~q~ll~SAT~~~~~~ 214 (569)
.++++|+-+++...-......+.+.+.+... ...++++--..+..+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ 558 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH
Confidence 9999998888774433334444444433322 2334555445544433
No 440
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.98 E-value=1.5 Score=48.54 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
+.+-+++|+||+-.-+|..-...+.+.+....+++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~ 520 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGK 520 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 56677899999988887766777777666654444
No 441
>PRK13695 putative NTPase; Provisional
Probab=88.92 E-value=2 Score=39.73 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|+.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998655
No 442
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.92 E-value=1.1 Score=45.69 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.||+|+|||....
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997544
No 443
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.80 E-value=4.4 Score=38.73 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=69.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc---CcHHHHHHHHHH----HHHhcccCCCeEEEE--EcCC
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKF----TKELGRYTDLRISLL--VGGD 131 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~---PtreLa~Q~~~~----~~~~~~~~~l~~~~~--~gg~ 131 (569)
.=+++.|+.|+|||..-+ ++.......|.++.+++ |+|+...|+... ...+... .+.+..+ .+-.
T Consensus 29 sL~lIEGd~~tGKSvLsq-----r~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~ 102 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQ-----RFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVN 102 (235)
T ss_pred eEEEEECCCCccHHHHHH-----HHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecccccc
Confidence 348899999999998655 44333334577888887 677777776542 2222211 1111111 1111
Q ss_pred CHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHH---HhcCCCCcEEEEEec
Q 008345 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL---GQLSENRQTLLFSAT 208 (569)
Q Consensus 132 ~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~---~~~~~~~q~ll~SAT 208 (569)
....+ ...+++.+.+ .....+-+++|||-........-..++.+++ +.+...-+++++|+-
T Consensus 103 ~~~~~--------------~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvh 166 (235)
T COG2874 103 WGRRS--------------ARKLLDLLLE--FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH 166 (235)
T ss_pred cChHH--------------HHHHHHHHHh--hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 11111 1223444332 2335567889999888766544233344443 444556789999987
Q ss_pred C
Q 008345 209 L 209 (569)
Q Consensus 209 ~ 209 (569)
+
T Consensus 167 p 167 (235)
T COG2874 167 P 167 (235)
T ss_pred h
Confidence 5
No 444
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.73 E-value=0.13 Score=46.72 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=62.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCe-EEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~-~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l 140 (569)
.+++.|++|+|||.+.+ -+.+.|... |. -.=|++| .+++=++..|+++.-+..|...- +..
T Consensus 7 ki~ITG~PGvGKtTl~~-ki~e~L~~~----g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~--la~- 68 (179)
T COG1618 7 KIFITGRPGVGKTTLVL-KIAEKLREK----GYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGI--LAR- 68 (179)
T ss_pred EEEEeCCCCccHHHHHH-HHHHHHHhc----CceeeeEEee----------eeecCCeEeeeEEEEccCCceEE--EEE-
Confidence 58899999999998643 445555443 22 2345566 23455666778777776543211 000
Q ss_pred cCCCCEEEECcHHHHHHHhhcCCC----CCCCeeEEEEeCCCccC--CCChHHHHHHHHHh
Q 008345 141 AQNPDIIIATPGRLMHHLSEVEDM----SLKSVEYVVFDEADCLF--GMGFAEQLHKILGQ 195 (569)
Q Consensus 141 ~~~~~IiV~Tp~rl~~~l~~~~~~----~l~~l~~iViDEah~l~--~~~f~~~l~~i~~~ 195 (569)
.+....-|+-++-..+.+++.... .+..-++||+||.--|- ...|.+.+.+++..
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 011222233333333333221000 13346899999998553 45577777777654
No 445
>PRK08006 replicative DNA helicase; Provisional
Probab=88.66 E-value=4.1 Score=44.24 Aligned_cols=113 Identities=15% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHhcccCCCeEEEE-EcCCCHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLL-VGGDSMESQF 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~-~~~~~~~~~~l~~~~~-~gg~~~~~~~ 137 (569)
|.=+++.|++|.|||...+--+...... .|..++|++..-. ..|+.. .+... .++....+ .|..+.++|.
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM~-~~ql~~Rlla~~---~~v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEMP-GEQIMMRMLASL---SRVDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccCC-HHHHHHHHHHHh---cCCCHHHhhcCCCCHHHHH
Confidence 4558889999999997555333322222 3667888875422 223332 22222 12222222 2333434332
Q ss_pred H------HHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 138 E------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 138 ~------~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
. .+.....+.|- |+..+.....+.. .....+++||||=.+.+.
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 2 22133455553 3334433332210 011257899999888765
No 446
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.62 E-value=0.36 Score=48.27 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=29.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
..+..+++.|+||||||... -.++..+.. ...+++++-.+.|+-
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~----~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPP----EDERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHT----TTSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchHH-HHHhhhccc----cccceEEecccccee
Confidence 34678999999999999854 344444333 246788888887763
No 447
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.61 E-value=0.8 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCCCCCCCCC-CCHHHHHHHH---HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 20 SKSGGFESLN-LSPNVFRAIK---RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 20 ~~~~~f~~l~-l~~~~~~~l~---~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
+..-+|++.| |...+ +.|. ++..++|--++.-.| -.-+.|++.||+|+|||+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi-~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQI-QEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHH-HHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHH
Confidence 3445666664 43333 2232 234444444333332 12367999999999999843
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.60 E-value=1.6 Score=47.24 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=35.5
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 53 ~i~~il~-----g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
-+..++. |.-+++.|++|+|||...+.-+. .+.. .|.++++++.. |-..|+.....++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~-~~a~----~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC-QLAK----NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHHh----cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 3445554 35588999999999986553222 2222 24568898865 3345665555554
No 449
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.44 E-value=2.7 Score=47.78 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=25.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
....+++||||+|.|.... ...+...+...|.... +++.+|-+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~ti-fILaTte~ 158 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVI-FILATTEV 158 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceE-EEEEcCCh
Confidence 3577899999999977532 3344455555444443 33444433
No 450
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=88.40 E-value=1.2 Score=46.34 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=41.0
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHH
Q 008345 35 FRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (569)
Q Consensus 35 ~~~l~~~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa 106 (569)
+..+.+.|+ +++.+...+..+.. +.++++.|+||||||...- .++..+ .+..+.+++-.+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~-al~~~i-----~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLS-ALLALV-----APDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHH-HHHccC-----CCCCcEEEECCcceec
Confidence 445555565 45667776665544 6789999999999997432 222222 1345677888887873
No 451
>PF12846 AAA_10: AAA-like domain
Probab=88.36 E-value=0.71 Score=46.45 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=30.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
.++++.|+||||||.... .++..+.. .|..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 578999999999997666 44444444 3667888877766544
No 452
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=88.30 E-value=3.3 Score=42.82 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.5
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEe
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SA 207 (569)
....+++||||+|++.... ...+...++..|.....++.|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 3567899999999987543 4556666666665665555333
No 453
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=88.21 E-value=1.7 Score=38.67 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=60.5
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 008345 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (569)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~I 319 (569)
+..|+..........+..++.+....+.+++|+|++..+++.+.+.|-...-....=|+-.+.. ......|
T Consensus 3 ~v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV 73 (137)
T PF04364_consen 3 RVDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPV 73 (137)
T ss_dssp EEEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SE
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeE
Confidence 3456666666656788888988888999999999999999999999987765555555543221 1223579
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccH
Q 008345 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (569)
Q Consensus 320 LV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~ 375 (569)
+|+++... -..+..+++||.+... + .+..+. ..++-++..++.
T Consensus 74 ~i~~~~~~--~~~~~~~vLinL~~~~-p-~~~~~f---------~rvieiv~~~~~ 116 (137)
T PF04364_consen 74 LITWDQEA--NPNNHADVLINLSGEV-P-PFFSRF---------ERVIEIVDQDDE 116 (137)
T ss_dssp EEE-TTS------S--SEEEE--SS----GGGGG----------SEEEEEE-SSHH
T ss_pred EEecCccc--CCCCCCCEEEECCCCC-c-chhhcc---------cEEEEEecCCHH
Confidence 99997532 1233368899987543 2 222222 455777766543
No 454
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=7.4 Score=39.07 Aligned_cols=126 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred HHHhcCC-----cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEc
Q 008345 55 PLILSGA-----DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129 (569)
Q Consensus 55 ~~il~g~-----dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g 129 (569)
|.+..|+ .+++.||+|+||+..+- ++.. ..+ ...+-+.+..|+..|.-.-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVAT------EAn-STFFSvSSSDLvSKWmGESEkLV------------ 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVAT------EAN-STFFSVSSSDLVSKWMGESEKLV------------ 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHh------hcC-CceEEeehHHHHHHHhccHHHHH------------
Confidence 6666764 49999999999986332 2211 112 45666777777665443322221
Q ss_pred CCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC---hHHHH----HHHHHhcC----C
Q 008345 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQL----HKILGQLS----E 198 (569)
Q Consensus 130 g~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~---f~~~l----~~i~~~~~----~ 198 (569)
..|+.+-++ ....+|.|||+|.+...+ -.+.- .+++-++. .
T Consensus 215 ----------------------knLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d 266 (439)
T KOG0739|consen 215 ----------------------KNLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND 266 (439)
T ss_pred ----------------------HHHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC
Confidence 012333322 345689999999877432 11111 22232332 2
Q ss_pred CCcEEEEEecCCh-HHHHHHHhcCCCCeeeee
Q 008345 199 NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRL 229 (569)
Q Consensus 199 ~~q~ll~SAT~~~-~~~~~~~~~l~~~~~i~~ 229 (569)
+--++.+.||--+ .+...++.-+....+|.+
T Consensus 267 ~~gvLVLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 267 NDGVLVLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred CCceEEEecCCCchhHHHHHHHHhhcceeccC
Confidence 4467888888543 344444444444434433
No 455
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.05 E-value=2 Score=49.81 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.||+|+|||...-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458999999999997544
No 456
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=1.4 Score=48.08 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=30.3
Q ss_pred CCCeeEEEEeCCCccCCC-------ChHHHHHHHHHhc---CCCCcEEEEEecCChH
Q 008345 166 LKSVEYVVFDEADCLFGM-------GFAEQLHKILGQL---SENRQTLLFSATLPSA 212 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~-------~f~~~l~~i~~~~---~~~~q~ll~SAT~~~~ 212 (569)
-+..++|.|||.|.|... .-..-++.++..+ ...+++.++-||--+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 445678999999987621 2233444554443 4567889999995443
No 457
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.93 E-value=0.39 Score=54.18 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=40.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
.++++.|+||||||..|++|-+-.+ +..++|+=|--|+...+..+.+..+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4799999999999999999986542 1258889999999888777666544
No 458
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.82 E-value=2.1 Score=49.48 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC----C-CCcee-ecCCCCHHHHHHHHHHHhcCCceEEEEec-cccccC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE----G-LEPSV-CYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGI 330 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~----~-~~~~~-i~g~l~~~~R~~~l~~F~~g~~~ILV~Td-v~arGl 330 (569)
++.++++.+||..-+.+..+.|... + ..+.. .||.|+..+++..+++|.+|..+|||+|. .+.+-+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH
Confidence 5789999999999988888877654 2 44333 89999999999999999999999999884 444433
No 459
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.81 E-value=3 Score=42.69 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=25.8
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+++||||+|.|.... ...+...++..|+...+++.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 3567899999999986543 445555666555555444443
No 460
>PHA00012 I assembly protein
Probab=87.81 E-value=7.6 Score=39.69 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred CCCCeeEEEEeCCCccCCCC-hH----HHHHHHHHhcCC-CCcEEEEEecCChHHHHHHHhcCCCC
Q 008345 165 SLKSVEYVVFDEADCLFGMG-FA----EQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDP 224 (569)
Q Consensus 165 ~l~~l~~iViDEah~l~~~~-f~----~~l~~i~~~~~~-~~q~ll~SAT~~~~~~~~~~~~l~~~ 224 (569)
+...-.++|+||||..+... +. ..+.+.+...++ +.-++++|-. |..+...++..+...
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~-ps~VDs~IR~ll~eH 142 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQD-ISIMDKQAREALAEH 142 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCC-HHHHhHHHHHhhhhe
Confidence 34566799999999988532 11 224444444333 3445555544 346677776655543
No 461
>PRK07004 replicative DNA helicase; Provisional
Probab=87.74 E-value=2.4 Score=45.98 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=54.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC---cHHHHHHHHHHHHHhcccCCCeEEEE-EcCCCHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP---TRDLALQTLKFTKELGRYTDLRISLL-VGGDSMES 135 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P---treLa~Q~~~~~~~~~~~~~l~~~~~-~gg~~~~~ 135 (569)
|.-+++.|+||+|||...+ -+...+... .|..+++++. ..+|+..+. ...+ ++....+ .|..+.++
T Consensus 213 g~liviaarpg~GKT~~al-~ia~~~a~~---~~~~v~~fSlEM~~~ql~~R~l---a~~~---~v~~~~i~~g~l~~~e 282 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSM-NIGEYVAVE---YGLPVAVFSMEMPGTQLAMRML---GSVG---RLDQHRMRTGRLTDED 282 (460)
T ss_pred CceEEEEeCCCCCccHHHH-HHHHHHHHH---cCCeEEEEeCCCCHHHHHHHHH---Hhhc---CCCHHHHhcCCCCHHH
Confidence 4558899999999997544 222222211 3566888874 444444322 2221 2222211 23333333
Q ss_pred HH------HHHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 136 QF------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 136 ~~------~~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
+. ..+. +..+.|. |+..+.....+.. .....+++||||=.+.+.
T Consensus 283 ~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~-~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 283 WPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLA-RQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEChhhhcc
Confidence 32 2222 3456553 3334433332211 012347899999888775
No 462
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=87.64 E-value=0.25 Score=45.99 Aligned_cols=44 Identities=32% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcC--CCCCCCeeEEEEeCCCccCC
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVE--DMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~--~~~l~~l~~iViDEah~l~~ 182 (569)
+.....+||||+++.-|++-..... .+. .+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~-~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGID-LKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhcccc-ccCcEEEEecccchHH
Confidence 3445679999999998876543311 122 3446899999998764
No 463
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.52 E-value=2 Score=47.90 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=78.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC--CCeEEEEEcCCCHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFE 138 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~--~l~~~~~~gg~~~~~~~~ 138 (569)
+-.++..|-=.|||.... +++..+... ..|.++++.+|.+..+..+++.+..+.+.. +-.+..+.| +.. .+
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~i- 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--SF- 327 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--EE-
Confidence 456777777789998655 666555432 147899999999999999998887754321 111111122 111 00
Q ss_pred HHcCC--CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 139 ELAQN--PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 139 ~l~~~--~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
...++ ..|.+++- .+.+...-.+++++|+|||+-+....+..-+ -.+.. .+++++++|.|-+.
T Consensus 328 ~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 328 SFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNTG 392 (738)
T ss_pred EecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCCC
Confidence 01112 24444421 1112244557899999999998764333322 22222 37889999988544
No 464
>PRK08760 replicative DNA helicase; Provisional
Probab=87.42 E-value=2.6 Score=45.91 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEE-EcCCCHHHHH-
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL-VGGDSMESQF- 137 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~-~gg~~~~~~~- 137 (569)
|.=+++.|+||+|||...+--+ ..+... .|..+++++..-. ..|+...+..... ++....+ .|..+.+++.
T Consensus 229 G~LivIaarPg~GKTafal~iA-~~~a~~---~g~~V~~fSlEMs-~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIA-EYAAIK---SKKGVAVFSMEMS-ASQLAMRLISSNG--RINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHH-HHHHHh---cCCceEEEeccCC-HHHHHHHHHHhhC--CCcHHHHhcCCCCHHHHHH
Confidence 3458889999999997555333 232211 3566888875332 2233332222211 1111111 2222333322
Q ss_pred -----HHHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 138 -----~~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
..+. +..+.|- |++.+...+.... .-..+++||||=.+.+.
T Consensus 302 ~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 1222 3445443 3344444433321 12357899999888774
No 465
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.41 E-value=1.4 Score=43.78 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=19.3
Q ss_pred cHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 151 p~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
|+-|..++.+ +..-+++.|||.|++.-
T Consensus 91 ~gDlaaiLt~-----Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 91 PGDLAAILTN-----LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred hhhHHHHHhc-----CCcCCeEEEehhhhcCh
Confidence 5556666653 55567899999999764
No 466
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.40 E-value=1.1 Score=49.07 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 008345 61 ADVVAMARTGSGKTAAF 77 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~ 77 (569)
+.+++.||+|+|||...
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999854
No 467
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.40 E-value=1.2 Score=51.88 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.|++|.|||...-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999998654
No 468
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.13 E-value=0.67 Score=49.04 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=32.9
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
-...+++++.|.||||||. ++-+++..+... |.+++|.=|.-+....
T Consensus 12 ~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~----g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 12 DSENRHILIIGATGSGKTQ-AIRHLLDQIRAR----GDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT----T-EEEEEEETTHHHHH
T ss_pred chhhCcEEEECCCCCCHHH-HHHHHHHHHHHc----CCEEEEEECCchHHHH
Confidence 3456889999999999997 455667666553 6789998898776443
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.12 E-value=1.4 Score=48.09 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=38.6
Q ss_pred HHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 52 KTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 52 ~~i~~il~g-----~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
..+..++.| .-+++.|++|+|||...+--+.+-+ ..|.+++|++- -|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~-----~~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC-----ANKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 345555543 5699999999999986553333222 24677888883 344567666666664
No 470
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.08 E-value=5.9 Score=46.51 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=25.8
Q ss_pred eeEEEEeCCCccCCCChH---HHHHHHHHhcCCCCcEEEEEecCChHH
Q 008345 169 VEYVVFDEADCLFGMGFA---EQLHKILGQLSENRQTLLFSATLPSAL 213 (569)
Q Consensus 169 l~~iViDEah~l~~~~f~---~~l~~i~~~~~~~~q~ll~SAT~~~~~ 213 (569)
-.+++|||+|.+...|.. .+...++...-....+.++-||-+++.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 468999999998853321 223344433333445666667655544
No 471
>PRK14701 reverse gyrase; Provisional
Probab=87.04 E-value=3.1 Score=51.88 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~------~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (569)
++.++||.+||+.-+.++...|... ++.+..+||+++..++...++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999888888762 456788999999999988899999999999999964
No 472
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=4.3 Score=41.22 Aligned_cols=113 Identities=19% Similarity=0.276 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCC-CCeEEEEEcCc-----------HHHHHHHHHHHHHhcccCCCeEEEE
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPT-----------RDLALQTLKFTKELGRYTDLRISLL 127 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~-~g~~~Lil~Pt-----------reLa~Q~~~~~~~~~~~~~l~~~~~ 127 (569)
++-+++.||+|+|||.. .-.+.++|.-.... .....+|=... --|+.++++.++++.+..+.-+.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35589999999999963 23334454322221 12234444433 3466667777777777777777776
Q ss_pred EcCC---------------CHH---------HHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC
Q 008345 128 VGGD---------------SME---------SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 128 ~gg~---------------~~~---------~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~ 183 (569)
++.. +.+ .|...++..++++|-|..-|.+- ++.-.+|-||-.+..
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s-----------iD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS-----------IDVAFVDRADIVFYV 324 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH-----------HHHHhhhHhhheeec
Confidence 6432 111 13345556677777665555433 445678888876654
Q ss_pred C
Q 008345 184 G 184 (569)
Q Consensus 184 ~ 184 (569)
|
T Consensus 325 G 325 (423)
T KOG0744|consen 325 G 325 (423)
T ss_pred C
Confidence 4
No 473
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.93 E-value=3.9 Score=45.68 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=28.8
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
+.+-.++|+|||-.-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 456688999999998888777777777776665543333
No 474
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=86.82 E-value=3.5 Score=38.22 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=37.6
Q ss_pred CCCCCeeEEEEeCCCccCCCCh--HHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHh
Q 008345 164 MSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (569)
Q Consensus 164 ~~l~~l~~iViDEah~l~~~~f--~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~ 219 (569)
+.-..+++||+||+-...+.++ .+.+..++..-|...-+|+..-.+|+.+.+.+..
T Consensus 92 i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 92 ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 3346789999999998877775 4677888888888888888888888888777653
No 475
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.75 E-value=0.51 Score=53.23 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=41.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
.++++.||||||||..+++|-+-.+ +..++|+=|--|+...+..+.++++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~-------~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW-------PGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC-------CCCEEEEeCcchHHHHHHHHHHhCC
Confidence 5799999999999999999977653 2348999999999888888766654
No 476
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=86.46 E-value=7.4 Score=36.92 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcC-C--CCcEEEEEecCCh
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-E--NRQTLLFSATLPS 211 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~-~--~~q~ll~SAT~~~ 211 (569)
+.+-+++++||-..-++......+.+++.... . ..+++++|.--..
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~ 177 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDIS 177 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc
Confidence 35778999999999888877777777666642 2 3567777765333
No 477
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=86.46 E-value=1.5 Score=45.56 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 008345 61 ADVVAMARTGSGKTAAF 77 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~ 77 (569)
+-++++||.|+|||+..
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 34788999999999853
No 478
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=86.46 E-value=2.3 Score=46.17 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=52.3
Q ss_pred CcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-----cccc-ccCCCCCC
Q 008345 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----DVAA-RGIDIPLL 335 (569)
Q Consensus 267 ~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T-----dv~a-rGlDip~v 335 (569)
.++||.++|++-+..+.+.+... ++.+..++|+.+.......+. +..+|+|+| +.+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 47999999999999888777643 567888999988766543332 578999999 3333 35778888
Q ss_pred CEEEE
Q 008345 336 DNVIN 340 (569)
Q Consensus 336 ~~VI~ 340 (569)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88873
No 479
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.43 E-value=3.1 Score=45.17 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=55.3
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCC
Q 008345 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSL 166 (569)
Q Consensus 91 ~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l 166 (569)
..+.++||.|-|+.-|.++...++..+ +.+.+++|+.+..+....+. ..+.|+|||. ... ..+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----VAa--RGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----VAA--RGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEcc-----ccc--ccCCC
Confidence 345679999999999998877777643 78999999998877655554 4789999994 222 25788
Q ss_pred CCeeEEEE
Q 008345 167 KSVEYVVF 174 (569)
Q Consensus 167 ~~l~~iVi 174 (569)
.++++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 88887773
No 480
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=86.42 E-value=2.8 Score=44.92 Aligned_cols=70 Identities=26% Similarity=0.345 Sum_probs=53.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc----CCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
.+.++|.+.+..=|..+++.+.+.+ ++++.++||.+.++....+. +..+|+|||.- -- ..++..+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g----~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv-----Ag--RGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAG----YKVTTLHGGKSQEQRENALADFREGTGDILVATDV-----AG--RGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhcc----ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc-----cc--cCCCCCc
Confidence 4679999999988888777777764 99999999999887655443 37899999952 22 2577888
Q ss_pred eeEEE
Q 008345 169 VEYVV 173 (569)
Q Consensus 169 l~~iV 173 (569)
+.+||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 88765
No 481
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.42 E-value=2.3 Score=41.70 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCC----ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccc-cCCCcc
Q 008345 290 GLEPSVCYGDMDQDARKIHVSRFRARK----TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA-RAGRTG 364 (569)
Q Consensus 290 ~~~~~~i~g~l~~~~R~~~l~~F~~g~----~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~g-R~g~~G 364 (569)
++.+..++++.+.+. -.|.++. ..|+|+=+.++||+.++++.......-+...+++.|+.---| |.|..+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455666665443322 2233332 789999999999999999999999888888888888764444 555567
Q ss_pred EEEEEeccccHHHHHHH
Q 008345 365 TAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 365 ~~i~~v~~~e~~~~~~l 381 (569)
.|=++.+++-...+..+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 77777766544444443
No 482
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=86.32 E-value=4.2 Score=45.46 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.|+|+..+.++++.+... ++.+..++|+.+..+....+ ....+|+||| +.+.. .+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~ar--GIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAAR--GLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhc--CCCcc
Confidence 3567999999999999988888764 57899999998776554433 2478999999 34443 58888
Q ss_pred CeeEEEEeC
Q 008345 168 SVEYVVFDE 176 (569)
Q Consensus 168 ~l~~iViDE 176 (569)
++++||.-+
T Consensus 325 ~V~~VInyd 333 (572)
T PRK04537 325 GVKYVYNYD 333 (572)
T ss_pred CCCEEEEcC
Confidence 898887643
No 483
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.98 E-value=4.1 Score=45.27 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
....+++||||+|.+.... ...+...+...|. .-+++|.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~-~~vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPP-YIVFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCC-CEEEEEecC
Confidence 4578899999999986532 2334444444333 333444444
No 484
>PRK09165 replicative DNA helicase; Provisional
Probab=85.94 E-value=4.9 Score=44.07 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=54.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcC----------CCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcC
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV----------PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~----------~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg 130 (569)
.-+++.|+||+|||...+--+........ ...|..++|++..-. ..|+...+-.. ..++....+..|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~--~s~v~~~~i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSE--QSEISSSKIRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHH--hcCCCHHHHhcC
Confidence 44888999999999765533333222210 113667888875322 23333322211 112222222222
Q ss_pred CCHHHHHHHHc------CCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 131 DSMESQFEELA------QNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 131 ~~~~~~~~~l~------~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
.-.+..+..+. ...++.|- |+..+...+.... .-..+++||||=.+.+.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcc
Confidence 22222222111 13345543 3344444443311 12347899999988765
No 485
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.91 E-value=3.3 Score=48.44 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=20.7
Q ss_pred HHHHHHHHhc------CCcEEEEcCCCchHHHHHH
Q 008345 50 QRKTMPLILS------GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 50 Q~~~i~~il~------g~dvl~~a~TGSGKT~a~l 78 (569)
|..-+..+.. ..++++.|++|+|||...-
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~ 226 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVE 226 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHH
Confidence 5555554432 2579999999999998543
No 486
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=85.86 E-value=2.3 Score=42.02 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAA 76 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a 76 (569)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34688899999999999973
No 487
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.84 E-value=1.9 Score=48.61 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=38.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH--HHHHHHHHHHHhccc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD--LALQTLKFTKELGRY 119 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre--La~Q~~~~~~~~~~~ 119 (569)
.++++.|+||+|||..+. .++..... .|..++++=|-.. |...+...++.++..
T Consensus 177 ~H~lv~G~TGsGKT~l~~-~l~~q~i~----~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAE-LLITQDIR----RGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHH----cCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 569999999999998764 34444443 2566788888754 777777777777643
No 488
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=85.83 E-value=1 Score=48.97 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHH
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~ 218 (569)
....++.|+|||-.-.+.+....+.++++... +-++|-.--+++..+..
T Consensus 586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g----iT~iSVgHRkSL~kfHd 634 (659)
T KOG0060|consen 586 YHKPKFAILDECTSAVTEDVEGALYRKCREMG----ITFISVGHRKSLWKFHD 634 (659)
T ss_pred hcCCceEEeechhhhccHHHHHHHHHHHHHcC----CeEEEeccHHHHHhhhh
Confidence 45678999999999888888888888877764 44555554455555544
No 489
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.81 E-value=2.1 Score=50.22 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.|++|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998654
No 490
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.66 E-value=1 Score=42.03 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCC-CcEEEEEec
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSAT 208 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~-~q~ll~SAT 208 (569)
.+.+++++||...-++......+.+.+..+... .++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 566889999999999887777777777665433 555555443
No 491
>PRK06321 replicative DNA helicase; Provisional
Probab=85.61 E-value=7.1 Score=42.46 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=54.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC---cHHHHHHHHHHHHHhcccCCCeEEEEE-cCCCHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP---TRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQ 136 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P---treLa~Q~~~~~~~~~~~~~l~~~~~~-gg~~~~~~ 136 (569)
.=+++.|++|.|||...+- +...+... .|..+++++. ..+|+..+.. ...++....+. |..+.+++
T Consensus 227 ~LiiiaarPgmGKTafal~-ia~~~a~~---~g~~v~~fSLEMs~~ql~~Rlla------~~s~v~~~~i~~~~l~~~e~ 296 (472)
T PRK06321 227 NLMILAARPAMGKTALALN-IAENFCFQ---NRLPVGIFSLEMTVDQLIHRIIC------SRSEVESKKISVGDLSGRDF 296 (472)
T ss_pred cEEEEEeCCCCChHHHHHH-HHHHHHHh---cCCeEEEEeccCCHHHHHHHHHH------hhcCCCHHHhhcCCCCHHHH
Confidence 4478899999999975443 43333221 3566888874 3344332211 11122222222 33333333
Q ss_pred H------HHHcCCCCEEEE-----CcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 137 F------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 137 ~------~~l~~~~~IiV~-----Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
. ..+. +..+.|- |...+...+.... .-..+++||||=.+.+.
T Consensus 297 ~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 297 QRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 2 2222 3346554 3344444433321 12347899999988875
No 492
>PRK05636 replicative DNA helicase; Provisional
Probab=85.57 E-value=4.1 Score=44.66 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=23.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.-+++.|+||+|||...+--+...... .|..+++++.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSl 302 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSL 302 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEe
Confidence 347889999999997555222222222 2566788753
No 493
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.52 E-value=0.9 Score=51.14 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=43.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g 129 (569)
.++++.|+||||||..+++|-+-. . +..++|+=|.-|+...+....++. |.+|.++-.
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~---~----~gS~VV~DpKgEl~~~Ta~~R~~~----G~~V~vfdP 282 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALK---W----GGPLVVLDPSTEVAPMVSEHRRDA----GREVIVLDP 282 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhc---C----CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 468999999999999999997532 2 234888889999988877766554 345554443
No 494
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=85.51 E-value=0.74 Score=51.92 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=38.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
.++++.|+||||||..+++|.+-.. +..++|+=|--|+..-+..+.++
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------~~S~VV~D~KGE~~~~Tag~R~~ 223 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------GHSSVITDLKGELWALTAGWRQK 223 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 5699999999999999999987542 34589999999998776665543
No 495
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.29 E-value=0.7 Score=51.75 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=39.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
.++++.||||||||..+++|-+-. . +..++|+=|.-|+...+...-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~---~----~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK---Y----GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc---C----CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 479999999999999999996432 2 2348999999999888777666554
No 496
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=85.00 E-value=0.73 Score=49.23 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=34.6
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 54 MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 54 i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
+|.-...+++++.|+||||||.+ +..++..+... +.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR----GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc----CCCEEEEeCCcchhHh
Confidence 33344567899999999999985 43444444432 5579999999886543
No 497
>PRK05595 replicative DNA helicase; Provisional
Probab=84.96 E-value=2.1 Score=46.27 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|+||+|||...+--+ ..+.. ..|.++++++..
T Consensus 201 g~liviaarpg~GKT~~al~ia-~~~a~---~~g~~vl~fSlE 239 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIA-EYAAL---REGKSVAIFSLE 239 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHH-HHHHH---HcCCcEEEEecC
Confidence 3447789999999997555322 22221 136678888864
No 498
>PRK04328 hypothetical protein; Provisional
Probab=84.72 E-value=1.7 Score=42.96 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
|.-+++.|++|+|||...+--+.+.+. .|.++++++ +-+-..++.+.++.++
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~-----~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 466899999999999765533333332 366688877 3334445555555554
No 499
>PHA00350 putative assembly protein
Probab=84.71 E-value=2.3 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=16.6
Q ss_pred EEEEcCCCchHHHHHHH-HHHHHh
Q 008345 63 VVAMARTGSGKTAAFLV-PMLQRL 85 (569)
Q Consensus 63 vl~~a~TGSGKT~a~li-p~l~~l 85 (569)
.++.|..|||||+..+- -++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47899999999987664 344343
No 500
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.67 E-value=4.7 Score=44.03 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.....++||||+|.+....+ ..+...+...|... ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCe-EEEEEEC
Confidence 35678999999998765432 33444445444333 3444444
Done!