Query 008345
Match_columns 569
No_of_seqs 411 out of 3060
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 00:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.6E-64 2.3E-68 536.3 45.0 368 21-392 54-427 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 6.5E-60 2.2E-64 501.0 40.8 368 22-394 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.4E-59 4.7E-64 499.3 40.5 369 20-390 12-400 (417)
4 1s2m_A Putative ATP-dependent 100.0 1.8E-57 6E-62 480.6 42.5 371 18-394 16-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 7.3E-58 2.5E-62 485.3 35.9 369 22-395 39-409 (414)
6 3fht_A ATP-dependent RNA helic 100.0 1.5E-56 5.3E-61 474.5 40.8 366 21-393 23-400 (412)
7 1xti_A Probable ATP-dependent 100.0 3.1E-56 1.1E-60 469.1 41.3 370 21-395 6-380 (391)
8 1hv8_A Putative ATP-dependent 100.0 9E-56 3.1E-60 460.8 41.9 360 21-392 4-364 (367)
9 3pey_A ATP-dependent RNA helic 100.0 2.8E-55 9.4E-60 461.7 41.8 363 22-393 4-378 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 3.9E-56 1.3E-60 493.2 37.0 371 20-390 14-415 (579)
11 3fmp_B ATP-dependent RNA helic 100.0 5.6E-58 1.9E-62 496.6 18.3 363 23-392 92-466 (479)
12 3i5x_A ATP-dependent RNA helic 100.0 2.2E-55 7.4E-60 485.8 37.3 368 23-390 68-466 (563)
13 1fuu_A Yeast initiation factor 100.0 6.2E-57 2.1E-61 474.7 21.6 368 20-393 18-386 (394)
14 2z0m_A 337AA long hypothetical 100.0 1.2E-52 4.2E-57 432.2 35.4 335 30-386 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 3.7E-52 1.3E-56 453.8 20.3 362 24-394 120-492 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 4.4E-50 1.5E-54 442.8 35.1 342 24-381 22-382 (591)
17 3oiy_A Reverse gyrase helicase 100.0 9.4E-51 3.2E-55 431.7 26.7 325 34-386 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2.7E-49 9.3E-54 431.8 34.7 338 23-381 2-351 (523)
19 1tf5_A Preprotein translocase 100.0 3.5E-49 1.2E-53 437.2 28.3 323 40-374 79-546 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 4.6E-47 1.6E-51 417.6 27.6 332 41-376 3-511 (556)
21 4ddu_A Reverse gyrase; topoiso 100.0 5.4E-47 1.8E-51 443.1 29.2 321 40-386 74-503 (1104)
22 2fsf_A Preprotein translocase 100.0 6.6E-47 2.3E-51 417.7 25.9 340 21-374 48-584 (853)
23 3tbk_A RIG-I helicase domain; 100.0 5.2E-46 1.8E-50 408.7 28.4 334 45-381 4-515 (555)
24 2ykg_A Probable ATP-dependent 100.0 1.9E-46 6.5E-51 424.5 24.7 343 35-380 3-523 (696)
25 2va8_A SSO2462, SKI2-type heli 100.0 2.1E-45 7.1E-50 417.0 33.2 338 21-374 6-409 (715)
26 2zj8_A DNA helicase, putative 100.0 4.1E-46 1.4E-50 422.9 25.1 335 24-377 2-391 (720)
27 1nkt_A Preprotein translocase 100.0 5.7E-45 2E-49 402.6 32.2 324 40-375 107-619 (922)
28 3l9o_A ATP-dependent RNA helic 100.0 1.6E-45 5.6E-50 430.7 28.8 331 23-374 162-598 (1108)
29 4a2q_A RIG-I, retinoic acid in 100.0 4.4E-45 1.5E-49 418.5 31.5 334 40-376 243-752 (797)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 4.7E-46 1.6E-50 435.2 22.3 336 24-387 31-468 (1054)
31 2p6r_A Afuhel308 helicase; pro 100.0 1.7E-45 5.9E-50 416.6 23.3 337 24-376 2-391 (702)
32 1wp9_A ATP-dependent RNA helic 100.0 5E-43 1.7E-47 377.0 33.9 324 45-376 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 1E-43 3.4E-48 412.1 30.0 335 40-376 243-752 (936)
34 2xgj_A ATP-dependent RNA helic 100.0 1.3E-42 4.4E-47 403.0 36.3 322 38-381 80-508 (1010)
35 1gm5_A RECG; helicase, replica 100.0 3.1E-43 1.1E-47 396.5 25.4 324 31-376 355-700 (780)
36 2eyq_A TRCF, transcription-rep 100.0 9.9E-41 3.4E-45 392.5 38.8 325 27-374 585-923 (1151)
37 4gl2_A Interferon-induced heli 100.0 5.5E-43 1.9E-47 396.3 18.1 324 45-373 7-518 (699)
38 2whx_A Serine protease/ntpase/ 100.0 6.2E-44 2.1E-48 395.0 7.5 317 25-385 151-493 (618)
39 4a4z_A Antiviral helicase SKI2 100.0 3.6E-41 1.2E-45 390.8 30.7 319 40-380 35-501 (997)
40 4f92_B U5 small nuclear ribonu 100.0 3.6E-40 1.2E-44 398.2 34.6 348 30-390 911-1322(1724)
41 2jlq_A Serine protease subunit 100.0 4.8E-42 1.6E-46 368.4 14.8 287 42-372 1-310 (451)
42 2oca_A DAR protein, ATP-depend 100.0 2.1E-41 7.2E-46 369.4 19.4 313 44-371 112-453 (510)
43 2xau_A PRE-mRNA-splicing facto 100.0 1.6E-40 5.4E-45 376.6 26.3 336 21-375 70-445 (773)
44 4f92_B U5 small nuclear ribonu 100.0 1.4E-39 4.9E-44 393.0 28.5 334 42-381 76-481 (1724)
45 2fwr_A DNA repair protein RAD2 100.0 6.2E-40 2.1E-44 354.3 18.7 293 45-374 93-455 (472)
46 3o8b_A HCV NS3 protease/helica 100.0 1.8E-40 6.3E-45 364.7 12.3 279 45-377 217-518 (666)
47 1yks_A Genome polyprotein [con 100.0 3.8E-41 1.3E-45 360.0 4.5 280 56-385 4-314 (440)
48 2wv9_A Flavivirin protease NS2 100.0 4.2E-40 1.4E-44 366.7 10.5 306 37-385 202-548 (673)
49 3fe2_A Probable ATP-dependent 100.0 1.3E-37 4.6E-42 306.3 23.3 212 20-232 26-240 (242)
50 2z83_A Helicase/nucleoside tri 100.0 1.8E-39 6.3E-44 348.9 9.5 282 42-373 6-313 (459)
51 1vec_A ATP-dependent RNA helic 100.0 2.4E-36 8.2E-41 289.4 24.4 203 22-227 2-205 (206)
52 2v6i_A RNA helicase; membrane, 100.0 3.6E-37 1.2E-41 328.5 20.5 270 59-371 1-289 (431)
53 3fmo_B ATP-dependent RNA helic 100.0 4.3E-37 1.5E-41 312.2 19.5 205 22-231 91-299 (300)
54 3ber_A Probable ATP-dependent 100.0 1.9E-36 6.4E-41 299.4 23.6 207 22-230 42-248 (249)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 6.9E-37 2.3E-41 303.1 18.6 220 21-241 21-251 (253)
56 3iuy_A Probable ATP-dependent 100.0 1.9E-36 6.5E-41 295.1 20.2 208 19-228 15-227 (228)
57 2oxc_A Probable ATP-dependent 100.0 4.6E-36 1.6E-40 293.0 22.5 209 18-230 19-229 (230)
58 2pl3_A Probable ATP-dependent 100.0 6.6E-36 2.3E-40 292.8 22.9 209 22-231 24-234 (236)
59 3ly5_A ATP-dependent RNA helic 100.0 3.3E-36 1.1E-40 299.9 20.7 205 22-226 51-259 (262)
60 3bor_A Human initiation factor 100.0 3.7E-36 1.3E-40 295.1 20.5 208 20-230 27-235 (237)
61 1q0u_A Bstdead; DEAD protein, 100.0 2.1E-36 7.3E-41 293.0 18.3 206 23-231 4-213 (219)
62 3jux_A Protein translocase sub 100.0 2.8E-34 9.5E-39 311.1 35.7 319 41-374 72-588 (822)
63 3h1t_A Type I site-specific re 100.0 9.2E-36 3.1E-40 330.6 24.0 301 45-362 178-545 (590)
64 2gxq_A Heat resistant RNA depe 100.0 3.5E-35 1.2E-39 281.4 22.1 204 24-230 2-206 (207)
65 1qde_A EIF4A, translation init 100.0 2.7E-35 9.1E-40 286.0 21.1 209 20-232 11-219 (224)
66 1t6n_A Probable ATP-dependent 100.0 6.4E-35 2.2E-39 282.6 22.0 207 19-228 10-219 (220)
67 3rc3_A ATP-dependent RNA helic 100.0 1.6E-35 5.5E-40 329.0 20.0 311 31-389 130-460 (677)
68 3dmq_A RNA polymerase-associat 100.0 3.4E-34 1.2E-38 332.8 25.3 319 45-372 153-612 (968)
69 3dkp_A Probable ATP-dependent 100.0 1.5E-34 5E-39 284.9 16.4 211 21-232 23-243 (245)
70 1z63_A Helicase of the SNF2/RA 100.0 3.8E-33 1.3E-37 303.4 26.2 311 45-375 37-455 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.8E-33 3.4E-37 318.7 23.6 313 45-372 271-708 (1038)
72 2ipc_A Preprotein translocase 100.0 2.4E-29 8.3E-34 277.1 33.8 318 41-374 76-699 (997)
73 1z3i_X Similar to RAD54-like; 100.0 8.3E-29 2.8E-33 276.6 33.6 321 45-374 55-529 (644)
74 3mwy_W Chromo domain-containin 100.0 2E-29 6.8E-34 288.4 28.3 319 45-374 236-685 (800)
75 1c4o_A DNA nucleotide excision 100.0 1.1E-28 3.8E-33 275.6 27.4 176 198-382 379-559 (664)
76 2d7d_A Uvrabc system protein B 100.0 1.6E-27 5.6E-32 266.0 27.6 175 198-381 385-564 (661)
77 2hjv_A ATP-dependent RNA helic 100.0 2.4E-27 8.3E-32 218.6 21.0 155 235-391 6-160 (163)
78 2p6n_A ATP-dependent RNA helic 100.0 7.2E-28 2.5E-32 227.9 16.8 171 217-390 8-179 (191)
79 2rb4_A ATP-dependent RNA helic 99.9 8E-27 2.7E-31 217.7 18.5 157 235-393 4-167 (175)
80 1fuk_A Eukaryotic initiation f 99.9 9.1E-27 3.1E-31 215.1 18.3 155 237-393 2-157 (165)
81 1t5i_A C_terminal domain of A 99.9 9.3E-27 3.2E-31 216.6 18.4 158 236-395 3-161 (172)
82 3eaq_A Heat resistant RNA depe 99.9 6.9E-26 2.3E-30 218.0 24.3 158 239-398 6-165 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-26 5.1E-31 217.7 17.4 161 231-392 12-172 (185)
84 3i32_A Heat resistant RNA depe 99.9 2.2E-25 7.6E-30 224.9 24.3 160 238-399 2-163 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 2.1E-26 7.2E-31 213.8 0.0 152 238-391 3-155 (170)
86 3b6e_A Interferon-induced heli 99.9 2E-24 6.7E-29 207.5 12.0 168 40-208 28-216 (216)
87 3llm_A ATP-dependent RNA helic 99.9 1.9E-23 6.4E-28 204.3 14.6 179 34-224 50-231 (235)
88 2vl7_A XPD; helicase, unknown 99.9 1.3E-22 4.5E-27 221.9 22.0 301 41-372 4-520 (540)
89 3crv_A XPD/RAD3 related DNA he 99.9 3.2E-21 1.1E-25 211.6 29.6 313 42-373 1-531 (551)
90 1rif_A DAR protein, DNA helica 99.9 3.6E-22 1.2E-26 200.6 10.8 154 45-213 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 6.2E-19 2.1E-23 172.3 17.1 138 45-212 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 5E-18 1.7E-22 187.9 21.5 82 45-130 3-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 3.5E-18 1.2E-22 170.0 11.9 129 246-374 92-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 2.9E-09 9.9E-14 117.6 11.8 145 47-208 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.1 0.0002 7E-09 79.4 23.0 70 44-116 8-77 (647)
96 3upu_A ATP-dependent DNA helic 98.1 1.7E-05 5.9E-10 84.4 12.6 137 38-206 18-162 (459)
97 3e1s_A Exodeoxyribonuclease V, 98.0 9.4E-06 3.2E-10 88.7 9.3 124 42-207 187-314 (574)
98 2xzl_A ATP-dependent helicase 98.0 3.2E-05 1.1E-09 87.7 13.7 70 43-116 358-427 (802)
99 4b3f_X DNA-binding protein smu 98.0 1.5E-05 5.1E-10 88.7 10.2 67 45-116 189-256 (646)
100 2gk6_A Regulator of nonsense t 98.0 3.2E-05 1.1E-09 85.6 12.2 70 43-116 178-247 (624)
101 2wjy_A Regulator of nonsense t 97.9 0.00011 3.6E-09 83.4 14.4 70 43-116 354-423 (800)
102 3hgt_A HDA1 complex subunit 3; 97.4 0.0014 4.8E-08 65.5 12.5 126 247-377 106-241 (328)
103 2o0j_A Terminase, DNA packagin 97.3 0.0028 9.5E-08 65.3 14.1 71 45-118 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.0 0.0065 2.2E-07 66.6 14.3 72 45-119 163-234 (592)
105 3ec2_A DNA replication protein 96.7 0.0028 9.6E-08 57.8 7.5 32 47-78 16-56 (180)
106 2orw_A Thymidine kinase; TMTK, 96.6 0.0032 1.1E-07 58.0 6.9 40 59-103 2-41 (184)
107 3vkw_A Replicase large subunit 96.6 0.0043 1.5E-07 64.8 8.3 106 63-208 164-269 (446)
108 2kjq_A DNAA-related protein; s 96.4 0.0016 5.3E-08 57.9 3.1 41 168-209 83-124 (149)
109 2b8t_A Thymidine kinase; deoxy 96.4 0.0012 4.1E-08 62.8 2.5 91 60-181 12-102 (223)
110 1xx6_A Thymidine kinase; NESG, 96.2 0.0023 7.9E-08 59.3 3.5 39 60-103 8-46 (191)
111 3kl4_A SRP54, signal recogniti 96.2 0.014 4.8E-07 61.0 9.4 127 62-217 99-231 (433)
112 1uaa_A REP helicase, protein ( 96.0 0.0082 2.8E-07 66.8 7.1 80 45-127 2-84 (673)
113 3te6_A Regulatory protein SIR3 95.8 0.1 3.6E-06 52.1 13.6 27 60-87 45-71 (318)
114 1l8q_A Chromosomal replication 95.8 0.018 6E-07 57.8 8.1 19 60-78 37-55 (324)
115 2w58_A DNAI, primosome compone 95.8 0.034 1.2E-06 51.4 9.2 18 61-78 55-72 (202)
116 2j9r_A Thymidine kinase; TK1, 95.8 0.0039 1.3E-07 58.6 2.6 40 60-104 28-67 (214)
117 1pjr_A PCRA; DNA repair, DNA r 95.6 0.022 7.5E-07 63.9 8.4 70 44-116 10-79 (724)
118 3n70_A Transport activator; si 95.5 0.032 1.1E-06 48.8 7.7 21 58-78 22-42 (145)
119 3u4q_A ATP-dependent helicase/ 95.4 0.019 6.7E-07 68.3 7.7 69 45-115 10-79 (1232)
120 2z4s_A Chromosomal replication 95.3 0.078 2.7E-06 55.7 10.8 41 168-208 194-236 (440)
121 1d2n_A N-ethylmaleimide-sensit 95.2 0.083 2.8E-06 51.3 10.2 18 61-78 65-82 (272)
122 3dm5_A SRP54, signal recogniti 95.1 0.05 1.7E-06 56.9 8.6 128 62-218 102-233 (443)
123 2orv_A Thymidine kinase; TP4A 95.1 0.02 6.7E-07 54.4 5.0 39 60-103 19-57 (234)
124 1a5t_A Delta prime, HOLB; zinc 95.1 0.04 1.4E-06 55.6 7.6 33 46-78 3-42 (334)
125 3u61_B DNA polymerase accessor 95.1 0.078 2.7E-06 52.9 9.8 38 168-205 105-142 (324)
126 2v1u_A Cell division control p 94.9 0.039 1.3E-06 56.2 7.0 29 168-196 130-159 (387)
127 1gm5_A RECG; helicase, replica 94.7 0.072 2.5E-06 60.0 9.1 92 249-340 400-496 (780)
128 2p65_A Hypothetical protein PF 94.7 0.051 1.7E-06 48.8 6.5 19 60-78 43-61 (187)
129 3co5_A Putative two-component 94.6 0.076 2.6E-06 46.2 7.3 21 57-77 24-44 (143)
130 2chg_A Replication factor C sm 94.6 0.22 7.4E-06 45.8 10.8 39 167-206 101-139 (226)
131 1fnn_A CDC6P, cell division co 94.5 0.2 6.7E-06 51.0 11.4 17 62-78 46-62 (389)
132 3bos_A Putative DNA replicatio 94.5 0.047 1.6E-06 51.4 6.0 19 60-78 52-70 (242)
133 1jbk_A CLPB protein; beta barr 94.4 1.2 4.1E-05 39.5 15.2 19 60-78 43-61 (195)
134 3e2i_A Thymidine kinase; Zn-bi 94.2 0.013 4.4E-07 55.0 1.4 98 60-193 28-125 (219)
135 3h4m_A Proteasome-activating n 94.2 0.12 4.3E-06 50.3 8.5 56 20-78 11-69 (285)
136 1sxj_E Activator 1 40 kDa subu 94.2 0.1 3.5E-06 52.6 8.2 42 167-209 133-174 (354)
137 2qby_B CDC6 homolog 3, cell di 94.1 0.036 1.2E-06 56.6 4.7 18 61-78 46-63 (384)
138 3syl_A Protein CBBX; photosynt 94.1 0.076 2.6E-06 52.5 6.8 18 61-78 68-85 (309)
139 2qby_A CDC6 homolog 1, cell di 94.0 0.31 1.1E-05 49.3 11.4 19 60-78 45-63 (386)
140 1w4r_A Thymidine kinase; type 93.9 0.055 1.9E-06 49.9 4.8 38 60-102 20-57 (195)
141 2zpa_A Uncharacterized protein 93.6 0.1 3.5E-06 57.3 7.1 112 45-209 175-288 (671)
142 2qgz_A Helicase loader, putati 93.5 0.055 1.9E-06 54.0 4.6 19 60-78 152-170 (308)
143 4b4t_M 26S protease regulatory 93.4 0.028 9.5E-07 58.7 2.2 55 20-77 175-232 (434)
144 3oiy_A Reverse gyrase helicase 93.3 0.31 1E-05 50.3 10.0 91 250-340 48-145 (414)
145 3pfi_A Holliday junction ATP-d 93.0 0.29 9.9E-06 48.9 9.1 43 24-78 27-73 (338)
146 4b4t_J 26S protease regulatory 92.8 1 3.5E-05 46.3 12.9 56 20-78 142-200 (405)
147 3eie_A Vacuolar protein sortin 92.6 0.21 7.3E-06 49.8 7.4 53 20-78 12-69 (322)
148 3vfd_A Spastin; ATPase, microt 92.5 0.37 1.3E-05 49.4 9.3 19 60-78 148-166 (389)
149 2q6t_A DNAB replication FORK h 92.4 0.25 8.4E-06 51.9 7.8 39 60-102 200-238 (444)
150 2r6a_A DNAB helicase, replicat 92.3 0.32 1.1E-05 51.2 8.6 39 60-102 203-241 (454)
151 1njg_A DNA polymerase III subu 92.3 0.82 2.8E-05 42.3 10.7 17 62-78 47-63 (250)
152 3b9p_A CG5977-PA, isoform A; A 92.1 0.18 6E-06 49.5 6.0 54 22-78 17-72 (297)
153 1iqp_A RFCS; clamp loader, ext 92.1 0.4 1.4E-05 47.3 8.7 39 167-206 109-147 (327)
154 3cf0_A Transitional endoplasmi 92.0 0.5 1.7E-05 46.6 9.3 55 21-78 10-67 (301)
155 1xwi_A SKD1 protein; VPS4B, AA 92.0 0.33 1.1E-05 48.5 7.9 52 21-78 7-63 (322)
156 1sxj_D Activator 1 41 kDa subu 92.0 0.14 4.9E-06 51.4 5.3 39 167-206 132-170 (353)
157 2qz4_A Paraplegin; AAA+, SPG7, 91.9 1.1 3.6E-05 42.7 11.3 53 23-78 3-57 (262)
158 1g5t_A COB(I)alamin adenosyltr 91.8 0.44 1.5E-05 43.9 7.9 136 61-218 29-172 (196)
159 3hjh_A Transcription-repair-co 91.8 0.58 2E-05 49.5 9.8 86 59-156 13-115 (483)
160 4b4t_L 26S protease subunit RP 91.7 0.14 4.9E-06 53.4 4.9 56 20-78 175-233 (437)
161 2p6n_A ATP-dependent RNA helic 91.6 0.9 3.1E-05 41.5 9.8 72 93-175 54-129 (191)
162 2gno_A DNA polymerase III, gam 91.6 0.36 1.2E-05 47.9 7.5 38 167-205 81-118 (305)
163 3pvs_A Replication-associated 91.3 0.19 6.6E-06 52.7 5.6 18 61-78 51-68 (447)
164 2qp9_X Vacuolar protein sortin 91.3 0.42 1.4E-05 48.5 7.9 18 61-78 85-102 (355)
165 4b4t_H 26S protease regulatory 91.2 0.17 5.7E-06 53.0 4.8 55 20-77 203-260 (467)
166 4b4t_K 26S protease regulatory 91.1 0.16 5.4E-06 52.9 4.5 56 20-78 166-224 (428)
167 1w5s_A Origin recognition comp 90.9 0.82 2.8E-05 46.7 9.9 18 61-78 51-70 (412)
168 2dr3_A UPF0273 protein PH0284; 90.8 0.22 7.4E-06 47.1 4.9 50 59-114 22-71 (247)
169 4b4t_I 26S protease regulatory 90.6 0.2 6.9E-06 51.9 4.7 56 20-78 176-234 (437)
170 1sxj_B Activator 1 37 kDa subu 90.6 0.27 9.3E-06 48.5 5.6 38 168-206 107-144 (323)
171 2hjv_A ATP-dependent RNA helic 90.5 0.78 2.7E-05 40.5 8.0 73 93-176 35-111 (163)
172 3uk6_A RUVB-like 2; hexameric 90.3 1.7 5.8E-05 43.7 11.4 18 61-78 71-88 (368)
173 1sxj_A Activator 1 95 kDa subu 90.1 0.6 2.1E-05 49.9 8.2 41 167-209 147-189 (516)
174 2eyq_A TRCF, transcription-rep 90.0 0.72 2.4E-05 54.3 9.3 91 249-339 635-730 (1151)
175 2zan_A Vacuolar protein sortin 89.8 0.51 1.7E-05 49.4 7.1 18 61-78 168-185 (444)
176 2w0m_A SSO2452; RECA, SSPF, un 89.7 1.3 4.5E-05 41.0 9.3 20 59-78 22-41 (235)
177 4ddu_A Reverse gyrase; topoiso 89.6 0.78 2.7E-05 53.8 9.1 92 249-340 104-202 (1104)
178 2rb4_A ATP-dependent RNA helic 89.6 1.3 4.5E-05 39.5 8.8 72 93-175 34-109 (175)
179 2l8b_A Protein TRAI, DNA helic 89.3 0.66 2.3E-05 42.0 6.4 59 46-108 35-95 (189)
180 1fuk_A Eukaryotic initiation f 88.7 1.3 4.6E-05 39.0 8.2 73 93-176 30-106 (165)
181 1jr3_A DNA polymerase III subu 88.7 1.7 5.8E-05 43.7 10.0 41 166-208 117-157 (373)
182 3hu3_A Transitional endoplasmi 88.6 0.73 2.5E-05 48.9 7.3 43 169-211 298-350 (489)
183 2px0_A Flagellar biosynthesis 88.6 1.1 3.9E-05 44.0 8.2 19 60-78 105-123 (296)
184 1hqc_A RUVB; extended AAA-ATPa 88.1 1 3.6E-05 44.4 7.8 44 23-78 9-56 (324)
185 1sxj_C Activator 1 40 kDa subu 88.1 1.2 4.1E-05 44.5 8.3 38 167-205 109-146 (340)
186 3eaq_A Heat resistant RNA depe 88.0 1.3 4.5E-05 41.0 8.0 71 93-174 31-105 (212)
187 2z43_A DNA repair and recombin 87.9 2 6.7E-05 42.8 9.6 57 60-116 107-165 (324)
188 2ce7_A Cell division protein F 87.7 0.48 1.6E-05 50.1 5.2 53 21-78 11-67 (476)
189 1n0w_A DNA repair protein RAD5 87.6 3.5 0.00012 38.4 10.9 20 60-79 24-43 (243)
190 2jgn_A DBX, DDX3, ATP-dependen 87.1 1.9 6.6E-05 38.9 8.4 89 69-174 28-120 (185)
191 1t5i_A C_terminal domain of A 87.1 1.5 5.1E-05 39.2 7.5 73 93-176 31-107 (172)
192 3lda_A DNA repair protein RAD5 86.7 3.9 0.00013 42.0 11.2 42 61-102 179-221 (400)
193 1t6n_A Probable ATP-dependent 86.5 3.4 0.00012 38.0 9.9 70 267-339 83-163 (220)
194 1ls1_A Signal recognition part 86.4 2 6.9E-05 42.1 8.6 46 167-212 179-225 (295)
195 2chq_A Replication factor C sm 86.3 0.16 5.6E-06 50.0 0.5 43 23-78 14-56 (319)
196 3cf2_A TER ATPase, transitiona 85.9 0.56 1.9E-05 52.8 4.6 42 168-209 297-348 (806)
197 2ehv_A Hypothetical protein PH 85.8 1.2 4.3E-05 41.8 6.6 46 167-212 134-184 (251)
198 2fna_A Conserved hypothetical 85.2 12 0.00041 36.8 13.9 52 151-208 124-178 (357)
199 3k1j_A LON protease, ATP-depen 84.8 6.2 0.00021 42.8 12.3 24 55-78 55-78 (604)
200 3e70_C DPA, signal recognition 84.8 9.4 0.00032 37.9 12.7 52 169-220 212-264 (328)
201 2i4i_A ATP-dependent RNA helic 84.7 3.5 0.00012 41.9 9.8 72 92-174 275-350 (417)
202 2d7d_A Uvrabc system protein B 84.5 4.4 0.00015 44.6 11.0 79 92-181 444-526 (661)
203 4a1f_A DNAB helicase, replicat 84.1 0.73 2.5E-05 46.3 4.2 39 59-102 45-83 (338)
204 1e9r_A Conjugal transfer prote 84.0 0.89 3E-05 47.3 4.9 44 59-107 52-95 (437)
205 3cf2_A TER ATPase, transitiona 83.5 0.65 2.2E-05 52.2 3.8 53 23-78 474-529 (806)
206 2ffh_A Protein (FFH); SRP54, s 83.2 3 0.0001 43.2 8.4 51 167-217 179-230 (425)
207 3bor_A Human initiation factor 83.1 2.6 9E-05 39.5 7.5 72 265-339 97-178 (237)
208 3iuy_A Probable ATP-dependent 82.9 3.3 0.00011 38.4 8.1 71 265-339 93-172 (228)
209 1nlf_A Regulatory protein REPA 82.7 1.7 5.9E-05 42.0 6.2 24 57-80 27-50 (279)
210 3i5x_A ATP-dependent RNA helic 82.5 9.2 0.00031 40.8 12.4 78 92-177 338-419 (563)
211 1qvr_A CLPB protein; coiled co 82.3 2.2 7.6E-05 48.5 7.7 18 61-78 192-209 (854)
212 3cmu_A Protein RECA, recombina 82.2 0.94 3.2E-05 55.7 4.7 46 54-104 1415-1466(2050)
213 2xxa_A Signal recognition part 81.9 1.1 3.8E-05 46.6 4.7 41 62-106 102-144 (433)
214 3m6a_A ATP-dependent protease 81.8 3 0.0001 44.8 8.1 19 60-78 108-126 (543)
215 1r6b_X CLPA protein; AAA+, N-t 81.7 2.1 7.2E-05 48.0 7.2 19 60-78 207-225 (758)
216 3pxi_A Negative regulator of g 81.5 2.9 0.0001 46.8 8.2 17 62-78 523-539 (758)
217 1oyw_A RECQ helicase, ATP-depe 81.4 2.6 9E-05 44.9 7.5 59 266-324 65-123 (523)
218 1yks_A Genome polyprotein [con 81.3 1.9 6.4E-05 45.0 6.2 69 93-173 177-245 (440)
219 3fe2_A Probable ATP-dependent 81.3 4.2 0.00014 38.1 8.2 71 265-339 101-181 (242)
220 2i1q_A DNA repair and recombin 81.0 5.9 0.0002 39.1 9.5 56 61-116 99-166 (322)
221 3i32_A Heat resistant RNA depe 80.9 7.2 0.00024 38.3 9.9 71 93-174 28-102 (300)
222 3io5_A Recombination and repai 80.6 1.9 6.4E-05 42.9 5.4 91 62-181 30-124 (333)
223 2gxq_A Heat resistant RNA depe 80.3 6.2 0.00021 35.6 8.8 71 265-339 71-149 (207)
224 3fht_A ATP-dependent RNA helic 80.1 4.3 0.00015 41.1 8.4 72 93-175 266-341 (412)
225 3sqw_A ATP-dependent RNA helic 79.9 13 0.00043 40.0 12.4 79 92-178 287-369 (579)
226 1xti_A Probable ATP-dependent 79.6 8.6 0.00029 38.5 10.4 72 266-340 76-158 (391)
227 2pl3_A Probable ATP-dependent 79.2 3.7 0.00013 38.2 7.0 55 265-324 96-154 (236)
228 1ypw_A Transitional endoplasmi 79.2 8.8 0.0003 43.2 11.2 18 60-77 238-255 (806)
229 2v1x_A ATP-dependent DNA helic 79.2 2.9 0.0001 45.3 7.0 59 266-324 84-144 (591)
230 3nwn_A Kinesin-like protein KI 78.5 1.4 4.8E-05 44.6 3.9 25 54-78 97-123 (359)
231 3pey_A ATP-dependent RNA helic 78.2 5.7 0.00019 39.8 8.5 76 93-179 243-322 (395)
232 2j37_W Signal recognition part 78.2 7.3 0.00025 41.2 9.5 35 62-101 103-137 (504)
233 2bjv_A PSP operon transcriptio 77.5 3.2 0.00011 39.5 6.1 20 59-78 28-47 (265)
234 1c4o_A DNA nucleotide excision 77.4 6.9 0.00024 43.0 9.4 77 93-180 439-519 (664)
235 1bg2_A Kinesin; motor protein, 77.4 1.7 5.7E-05 43.4 4.0 24 55-78 71-96 (325)
236 3ber_A Probable ATP-dependent 77.3 6.3 0.00022 37.2 8.1 70 266-339 111-191 (249)
237 1hv8_A Putative ATP-dependent 77.0 6.7 0.00023 38.7 8.6 74 92-176 237-314 (367)
238 3b85_A Phosphate starvation-in 76.9 1.9 6.4E-05 40.0 4.0 36 42-77 4-39 (208)
239 2oap_1 GSPE-2, type II secreti 76.8 6.1 0.00021 41.9 8.5 40 35-76 236-276 (511)
240 2zts_A Putative uncharacterize 76.7 2.4 8.2E-05 39.7 4.8 39 60-102 30-68 (251)
241 3dc4_A Kinesin-like protein NO 76.6 1.7 5.6E-05 43.8 3.8 23 55-77 88-112 (344)
242 1v8k_A Kinesin-like protein KI 76.5 1.7 6E-05 44.6 3.9 24 55-78 148-173 (410)
243 1s2m_A Putative ATP-dependent 76.3 6.1 0.00021 39.9 8.2 72 93-175 258-333 (400)
244 2oxc_A Probable ATP-dependent 76.2 7 0.00024 36.3 7.9 71 249-324 72-150 (230)
245 1wp9_A ATP-dependent RNA helic 76.2 7.5 0.00026 39.9 9.0 96 69-178 340-447 (494)
246 4etp_A Kinesin-like protein KA 75.9 2 6.8E-05 44.2 4.2 26 53-78 132-159 (403)
247 1u0j_A DNA replication protein 75.9 5.3 0.00018 38.5 7.0 51 24-78 66-122 (267)
248 2y65_A Kinesin, kinesin heavy 75.9 1.9 6.5E-05 43.7 4.0 23 55-77 78-102 (365)
249 3dmn_A Putative DNA helicase; 75.9 41 0.0014 29.6 13.3 115 210-343 8-123 (174)
250 2vvg_A Kinesin-2; motor protei 75.8 1.9 6.6E-05 43.4 4.0 23 55-77 83-107 (350)
251 3b6u_A Kinesin-like protein KI 75.4 1.9 6.6E-05 43.8 3.9 24 55-78 95-120 (372)
252 3gbj_A KIF13B protein; kinesin 75.3 2 6.8E-05 43.4 3.9 25 54-78 85-111 (354)
253 1t5c_A CENP-E protein, centrom 75.3 2 6.7E-05 43.4 3.9 24 55-78 71-96 (349)
254 2h58_A Kinesin-like protein KI 75.2 2 7E-05 42.9 4.0 26 53-78 72-99 (330)
255 2j0s_A ATP-dependent RNA helic 75.2 6.9 0.00024 39.6 8.2 72 93-175 276-351 (410)
256 1goj_A Kinesin, kinesin heavy 75.1 2 6.8E-05 43.4 3.9 23 56-78 75-99 (355)
257 4a14_A Kinesin, kinesin-like p 75.1 2 7E-05 43.1 4.0 23 55-77 77-101 (344)
258 1x88_A Kinesin-like protein KI 75.1 1.9 6.6E-05 43.6 3.8 24 55-78 82-107 (359)
259 1vec_A ATP-dependent RNA helic 75.1 7.8 0.00027 35.0 7.8 55 266-324 71-130 (206)
260 2nr8_A Kinesin-like protein KI 75.0 2 6.8E-05 43.4 3.9 25 54-78 96-122 (358)
261 3lre_A Kinesin-like protein KI 75.0 2.1 7E-05 43.3 4.0 23 55-77 99-123 (355)
262 3t0q_A AGR253WP; kinesin, alph 74.9 1.8 6.1E-05 43.7 3.5 26 53-78 77-104 (349)
263 1kgd_A CASK, peripheral plasma 74.9 1.4 4.8E-05 39.5 2.5 20 59-78 4-23 (180)
264 2zfi_A Kinesin-like protein KI 74.9 2.1 7.1E-05 43.5 4.0 24 55-78 83-108 (366)
265 2heh_A KIF2C protein; kinesin, 74.3 2.1 7.3E-05 43.7 3.9 24 55-78 128-153 (387)
266 1gku_B Reverse gyrase, TOP-RG; 73.9 6.5 0.00022 45.8 8.4 88 251-340 84-181 (1054)
267 2db3_A ATP-dependent RNA helic 73.9 7.7 0.00026 40.0 8.2 68 96-174 303-374 (434)
268 1f9v_A Kinesin-like protein KA 73.9 1.9 6.3E-05 43.5 3.3 25 54-78 77-103 (347)
269 2wbe_C Bipolar kinesin KRP-130 73.7 2.1 7.3E-05 43.5 3.8 23 56-78 95-119 (373)
270 3cob_A Kinesin heavy chain-lik 73.7 2 6.8E-05 43.6 3.5 26 53-78 71-98 (369)
271 1p9r_A General secretion pathw 73.6 3.8 0.00013 42.4 5.7 29 48-76 153-183 (418)
272 3u06_A Protein claret segregat 73.2 2.2 7.4E-05 44.1 3.6 25 53-77 130-156 (412)
273 4akg_A Glutathione S-transfera 72.7 5.3 0.00018 50.9 7.6 48 30-78 890-941 (2695)
274 1j8m_F SRP54, signal recogniti 72.7 5.7 0.0002 38.9 6.5 17 62-78 100-116 (297)
275 1vma_A Cell division protein F 72.7 4 0.00014 40.2 5.4 16 63-78 107-122 (306)
276 2yjt_D ATP-dependent RNA helic 75.0 0.74 2.5E-05 41.0 0.0 73 93-176 30-106 (170)
277 3bfn_A Kinesin-like protein KI 72.2 2.2 7.7E-05 43.5 3.5 33 46-78 75-117 (388)
278 2owm_A Nckin3-434, related to 72.1 2.6 8.9E-05 43.9 4.0 23 56-78 131-155 (443)
279 1ofh_A ATP-dependent HSL prote 72.0 7.2 0.00025 37.7 7.1 19 60-78 50-68 (310)
280 2yhs_A FTSY, cell division pro 71.8 12 0.0004 39.5 8.9 17 62-78 295-311 (503)
281 2eyu_A Twitching motility prot 71.7 1.5 5.1E-05 42.3 1.9 21 57-77 22-42 (261)
282 3cmu_A Protein RECA, recombina 71.6 10 0.00035 46.8 9.5 120 59-209 1080-1217(2050)
283 2wv9_A Flavivirin protease NS2 71.6 4.6 0.00016 44.5 6.0 68 93-173 410-478 (673)
284 3a8t_A Adenylate isopentenyltr 71.6 2.1 7.1E-05 42.9 3.0 18 61-78 41-58 (339)
285 3exa_A TRNA delta(2)-isopenten 71.4 1.7 5.8E-05 43.1 2.3 18 61-78 4-21 (322)
286 3ly5_A ATP-dependent RNA helic 71.3 18 0.00061 34.3 9.6 72 265-340 125-207 (262)
287 3nbx_X ATPase RAVA; AAA+ ATPas 71.3 5.3 0.00018 42.3 6.3 38 41-78 22-59 (500)
288 2oca_A DAR protein, ATP-depend 71.2 21 0.00071 37.4 11.0 76 94-179 348-427 (510)
289 3tau_A Guanylate kinase, GMP k 71.2 2 6.8E-05 39.6 2.6 20 59-78 7-26 (208)
290 2gza_A Type IV secretion syste 71.1 4 0.00014 41.2 5.1 20 57-76 172-191 (361)
291 3foz_A TRNA delta(2)-isopenten 71.0 1.9 6.5E-05 42.7 2.5 17 62-78 12-28 (316)
292 1lvg_A Guanylate kinase, GMP k 70.9 2 6.9E-05 39.2 2.6 19 59-77 3-21 (198)
293 3hws_A ATP-dependent CLP prote 70.7 5.5 0.00019 40.0 6.1 20 59-78 50-69 (363)
294 2rep_A Kinesin-like protein KI 70.4 2.6 8.9E-05 42.9 3.5 25 54-78 108-134 (376)
295 3vaa_A Shikimate kinase, SK; s 70.3 2.1 7.3E-05 38.9 2.6 20 59-78 24-43 (199)
296 2v6i_A RNA helicase; membrane, 70.3 4.7 0.00016 41.7 5.6 68 93-172 171-238 (431)
297 4ag6_A VIRB4 ATPase, type IV s 70.3 3.3 0.00011 42.3 4.3 42 59-105 34-75 (392)
298 2r44_A Uncharacterized protein 70.2 2.7 9.3E-05 41.6 3.6 27 52-78 38-64 (331)
299 2ze6_A Isopentenyl transferase 70.1 1.9 6.6E-05 41.2 2.3 16 63-78 4-19 (253)
300 2pt7_A CAG-ALFA; ATPase, prote 70.0 4.6 0.00016 40.3 5.2 19 58-76 169-187 (330)
301 3bh0_A DNAB-like replicative h 69.8 2.4 8.3E-05 42.0 3.1 38 60-102 68-105 (315)
302 3trf_A Shikimate kinase, SK; a 69.7 2.2 7.6E-05 38.1 2.5 19 60-78 5-23 (185)
303 2xau_A PRE-mRNA-splicing facto 69.1 11 0.00039 42.1 8.7 75 93-174 303-393 (773)
304 3lw7_A Adenylate kinase relate 69.1 2.2 7.4E-05 37.3 2.3 17 62-78 3-19 (179)
305 4f4c_A Multidrug resistance pr 69.0 6 0.0002 47.3 6.7 39 166-204 1233-1271(1321)
306 2j41_A Guanylate kinase; GMP, 69.0 2.2 7.6E-05 38.7 2.4 20 58-77 4-23 (207)
307 1qhx_A CPT, protein (chloramph 69.0 2.3 8E-05 37.6 2.5 19 60-78 3-21 (178)
308 2qmh_A HPR kinase/phosphorylas 68.4 2.5 8.4E-05 39.0 2.5 19 60-78 34-52 (205)
309 1qde_A EIF4A, translation init 68.3 8.2 0.00028 35.4 6.3 86 249-339 62-160 (224)
310 1ojl_A Transcriptional regulat 68.3 3.6 0.00012 40.4 3.9 20 59-78 24-43 (304)
311 3ney_A 55 kDa erythrocyte memb 68.0 2.5 8.6E-05 38.8 2.5 21 58-78 17-37 (197)
312 1zp6_A Hypothetical protein AT 67.7 1.8 6.2E-05 38.9 1.5 20 58-77 7-26 (191)
313 3a00_A Guanylate kinase, GMP k 67.6 2.7 9.1E-05 37.8 2.6 17 61-77 2-18 (186)
314 3tr0_A Guanylate kinase, GMP k 67.6 2.6 9E-05 38.2 2.6 19 59-77 6-24 (205)
315 2qor_A Guanylate kinase; phosp 67.3 2.4 8.2E-05 38.8 2.3 22 57-78 9-30 (204)
316 1tue_A Replication protein E1; 67.1 8.1 0.00028 35.7 5.7 45 32-78 28-76 (212)
317 2cvh_A DNA repair and recombin 67.1 2.8 9.7E-05 38.4 2.7 34 60-101 20-53 (220)
318 2ius_A DNA translocase FTSK; n 67.1 7.7 0.00026 41.1 6.4 42 60-102 167-208 (512)
319 3iij_A Coilin-interacting nucl 66.7 2 6.7E-05 38.3 1.5 21 58-78 9-29 (180)
320 1ex7_A Guanylate kinase; subst 66.5 2.9 9.8E-05 38.0 2.6 17 61-77 2-18 (186)
321 3vkg_A Dynein heavy chain, cyt 66.4 10 0.00035 48.9 8.2 48 30-78 873-924 (3245)
322 3tbk_A RIG-I helicase domain; 66.3 12 0.00042 39.3 8.0 95 71-175 370-477 (555)
323 1ry6_A Internal kinesin; kines 66.3 4.1 0.00014 41.2 3.9 20 59-78 82-103 (360)
324 1kag_A SKI, shikimate kinase I 66.1 3.1 0.00011 36.6 2.7 18 60-77 4-21 (173)
325 4dzz_A Plasmid partitioning pr 66.1 4.2 0.00014 36.8 3.7 31 144-178 55-85 (206)
326 4f4c_A Multidrug resistance pr 66.0 15 0.00052 43.8 9.3 35 166-200 570-604 (1321)
327 2r2a_A Uncharacterized protein 65.8 4.1 0.00014 37.4 3.5 17 63-79 8-24 (199)
328 1nks_A Adenylate kinase; therm 65.7 4.3 0.00015 36.2 3.6 17 62-78 3-19 (194)
329 1z6g_A Guanylate kinase; struc 65.2 3.2 0.00011 38.5 2.7 20 58-77 21-40 (218)
330 1kht_A Adenylate kinase; phosp 65.2 3.1 0.00011 37.1 2.6 19 60-78 3-21 (192)
331 3b5x_A Lipid A export ATP-bind 65.1 11 0.00039 40.5 7.5 42 166-208 496-537 (582)
332 3dkp_A Probable ATP-dependent 64.8 3.4 0.00012 38.8 2.9 73 265-340 97-181 (245)
333 3u4q_B ATP-dependent helicase/ 64.7 5.1 0.00017 47.2 4.9 38 64-103 5-42 (1166)
334 1wrb_A DJVLGB; RNA helicase, D 64.7 23 0.00078 33.1 8.8 70 266-339 100-179 (253)
335 2l82_A Designed protein OR32; 64.6 24 0.00083 28.4 7.3 54 269-322 5-58 (162)
336 2jlq_A Serine protease subunit 64.2 8 0.00027 40.2 5.9 68 93-173 188-256 (451)
337 1ly1_A Polynucleotide kinase; 64.1 3.1 0.00011 36.7 2.3 17 62-78 4-20 (181)
338 3crm_A TRNA delta(2)-isopenten 64.1 3.7 0.00013 40.8 3.0 17 62-78 7-23 (323)
339 3hr8_A Protein RECA; alpha and 63.7 4.6 0.00016 40.8 3.7 47 53-104 48-100 (356)
340 1m7g_A Adenylylsulfate kinase; 63.5 4.3 0.00015 37.2 3.3 32 46-78 12-43 (211)
341 1y63_A LMAJ004144AAA protein; 63.3 3.5 0.00012 36.9 2.6 20 59-78 9-28 (184)
342 1znw_A Guanylate kinase, GMP k 63.3 3.5 0.00012 37.7 2.6 22 56-77 16-37 (207)
343 3kb2_A SPBC2 prophage-derived 63.3 3.2 0.00011 36.3 2.2 17 62-78 3-19 (173)
344 1lv7_A FTSH; alpha/beta domain 63.0 3.3 0.00011 39.3 2.4 55 21-78 7-63 (257)
345 1c9k_A COBU, adenosylcobinamid 62.7 4.6 0.00016 36.5 3.1 33 63-104 2-34 (180)
346 2iut_A DNA translocase FTSK; n 62.5 11 0.00036 40.6 6.4 42 61-103 215-256 (574)
347 3jvv_A Twitching mobility prot 62.5 3.2 0.00011 41.9 2.3 18 59-76 122-139 (356)
348 3bgw_A DNAB-like replicative h 62.4 6.7 0.00023 40.8 4.8 38 60-102 197-234 (444)
349 1cr0_A DNA primase/helicase; R 62.4 6.3 0.00021 38.2 4.4 39 59-101 34-72 (296)
350 3d8b_A Fidgetin-like protein 1 62.1 13 0.00045 37.1 6.9 19 60-78 117-135 (357)
351 2whx_A Serine protease/ntpase/ 62.1 13 0.00046 40.3 7.3 69 93-173 355-423 (618)
352 4gp7_A Metallophosphoesterase; 62.0 3.3 0.00011 36.7 2.1 20 59-78 8-27 (171)
353 3eph_A TRNA isopentenyltransfe 62.0 3.4 0.00012 42.4 2.4 17 62-78 4-20 (409)
354 3d3q_A TRNA delta(2)-isopenten 61.7 3.6 0.00012 41.2 2.5 17 62-78 9-25 (340)
355 4eun_A Thermoresistant glucoki 61.5 4 0.00014 37.1 2.6 20 59-78 28-47 (200)
356 1tf7_A KAIC; homohexamer, hexa 61.5 11 0.00037 40.1 6.4 39 59-102 280-318 (525)
357 1w36_B RECB, exodeoxyribonucle 61.4 11 0.00037 44.5 6.9 54 62-115 18-78 (1180)
358 1s96_A Guanylate kinase, GMP k 61.2 4.1 0.00014 38.0 2.6 21 57-77 13-33 (219)
359 2ewv_A Twitching motility prot 60.7 3.7 0.00013 41.7 2.4 20 58-77 134-153 (372)
360 3mwy_W Chromo domain-containin 60.4 43 0.0015 37.5 11.4 76 92-178 571-653 (800)
361 3t15_A Ribulose bisphosphate c 59.5 3.9 0.00013 39.9 2.3 18 61-78 37-54 (293)
362 1xjc_A MOBB protein homolog; s 59.2 4.1 0.00014 36.4 2.1 15 63-77 7-21 (169)
363 1knq_A Gluconate kinase; ALFA/ 59.2 3.9 0.00013 36.1 2.0 19 60-78 8-26 (175)
364 3cm0_A Adenylate kinase; ATP-b 59.1 3.4 0.00012 36.8 1.6 19 60-78 4-22 (186)
365 2z0m_A 337AA long hypothetical 58.2 14 0.00049 35.8 6.3 70 92-176 219-292 (337)
366 3p32_A Probable GTPase RV1496/ 58.2 56 0.0019 32.4 10.8 17 62-78 81-97 (355)
367 2yvu_A Probable adenylyl-sulfa 58.0 4 0.00014 36.5 1.9 19 60-78 13-31 (186)
368 2r8r_A Sensor protein; KDPD, P 58.0 9.8 0.00033 35.7 4.6 21 62-82 8-28 (228)
369 4fcw_A Chaperone protein CLPB; 57.8 5.6 0.00019 38.6 3.1 17 62-78 49-65 (311)
370 2bdt_A BH3686; alpha-beta prot 57.8 4.6 0.00016 36.1 2.3 17 62-78 4-20 (189)
371 1um8_A ATP-dependent CLP prote 57.5 5 0.00017 40.5 2.7 19 60-78 72-90 (376)
372 3fmo_B ATP-dependent RNA helic 57.1 12 0.0004 36.6 5.3 85 249-340 142-241 (300)
373 1tev_A UMP-CMP kinase; ploop, 57.1 4.5 0.00015 36.1 2.1 19 60-78 3-21 (196)
374 2jtq_A Phage shock protein E; 56.9 28 0.00094 26.4 6.5 38 264-301 39-76 (85)
375 1q57_A DNA primase/helicase; d 56.9 5.3 0.00018 42.3 2.9 40 59-102 241-280 (503)
376 1rj9_A FTSY, signal recognitio 56.9 9.7 0.00033 37.4 4.6 18 60-77 102-119 (304)
377 1ixz_A ATP-dependent metallopr 56.8 4.8 0.00016 38.0 2.3 54 21-77 11-66 (254)
378 2ykg_A Probable ATP-dependent 56.7 13 0.00043 40.8 6.1 79 92-177 397-488 (696)
379 3t61_A Gluconokinase; PSI-biol 56.7 4.8 0.00017 36.5 2.3 18 61-78 19-36 (202)
380 3nwj_A ATSK2; P loop, shikimat 56.4 6 0.00021 37.7 2.9 21 58-78 46-66 (250)
381 2c95_A Adenylate kinase 1; tra 56.3 5.7 0.0002 35.5 2.7 20 59-78 8-27 (196)
382 4h1g_A Maltose binding protein 56.2 6.9 0.00024 43.4 3.8 25 53-77 454-480 (715)
383 3uie_A Adenylyl-sulfate kinase 56.2 4.7 0.00016 36.6 2.1 32 46-78 12-43 (200)
384 2rhm_A Putative kinase; P-loop 56.2 4.9 0.00017 35.9 2.2 19 60-78 5-23 (193)
385 1f2t_A RAD50 ABC-ATPase; DNA d 56.1 5.4 0.00018 34.6 2.3 15 62-76 25-39 (149)
386 3lnc_A Guanylate kinase, GMP k 55.9 3.9 0.00013 38.1 1.5 19 59-77 26-44 (231)
387 1nij_A Hypothetical protein YJ 55.8 7.6 0.00026 38.3 3.7 33 63-102 7-39 (318)
388 2zr9_A Protein RECA, recombina 55.5 11 0.00037 37.9 4.8 38 60-102 61-98 (349)
389 1v5w_A DMC1, meiotic recombina 55.4 8.6 0.00029 38.4 4.0 43 61-103 123-166 (343)
390 1u94_A RECA protein, recombina 55.4 11 0.00038 37.9 4.9 38 60-102 63-100 (356)
391 2c9o_A RUVB-like 1; hexameric 55.3 5.3 0.00018 41.7 2.6 18 61-78 64-81 (456)
392 3sxu_A DNA polymerase III subu 55.1 27 0.00092 30.3 6.7 82 251-344 24-105 (150)
393 3qf7_A RAD50; ABC-ATPase, ATPa 55.0 5.2 0.00018 40.5 2.3 16 62-77 25-40 (365)
394 3hix_A ALR3790 protein; rhodan 55.0 15 0.0005 29.5 4.7 39 262-300 48-87 (106)
395 1zuh_A Shikimate kinase; alpha 54.9 5.9 0.0002 34.6 2.4 18 61-78 8-25 (168)
396 3o8b_A HCV NS3 protease/helica 54.8 12 0.00041 41.0 5.3 66 93-173 396-461 (666)
397 3cmw_A Protein RECA, recombina 54.5 33 0.0011 41.8 9.4 49 61-117 1432-1480(1706)
398 2va8_A SSO2462, SKI2-type heli 54.4 39 0.0013 37.2 9.6 76 93-175 252-363 (715)
399 1fuu_A Yeast initiation factor 54.3 63 0.0022 31.9 10.5 71 265-340 88-168 (394)
400 3fb4_A Adenylate kinase; psych 54.3 5.6 0.00019 36.4 2.3 17 62-78 2-18 (216)
401 1via_A Shikimate kinase; struc 54.1 6.3 0.00022 34.7 2.5 17 62-78 6-22 (175)
402 1cke_A CK, MSSA, protein (cyti 54.1 5.7 0.0002 36.6 2.3 18 61-78 6-23 (227)
403 1q0u_A Bstdead; DEAD protein, 54.1 10 0.00036 34.6 4.1 73 248-324 51-134 (219)
404 4gl2_A Interferon-induced heli 54.0 5.4 0.00019 43.9 2.5 75 93-174 400-488 (699)
405 3asz_A Uridine kinase; cytidin 53.9 5.6 0.00019 36.2 2.2 18 60-77 6-23 (211)
406 1ye8_A Protein THEP1, hypothet 53.8 6 0.00021 35.4 2.3 16 62-77 2-17 (178)
407 2bwj_A Adenylate kinase 5; pho 53.8 6.5 0.00022 35.2 2.6 19 60-78 12-30 (199)
408 3b9q_A Chloroplast SRP recepto 53.7 10 0.00035 37.2 4.2 16 62-77 102-117 (302)
409 3eiq_A Eukaryotic initiation f 53.6 42 0.0014 33.5 9.1 73 265-340 107-189 (414)
410 1e6c_A Shikimate kinase; phosp 53.6 6.1 0.00021 34.5 2.3 18 61-78 3-20 (173)
411 3c8u_A Fructokinase; YP_612366 53.3 5.1 0.00017 36.7 1.8 18 60-77 22-39 (208)
412 3kta_A Chromosome segregation 53.2 6 0.00021 35.0 2.3 16 62-77 28-43 (182)
413 1gvn_B Zeta; postsegregational 53.0 5.3 0.00018 38.8 2.0 17 62-78 35-51 (287)
414 3l9o_A ATP-dependent RNA helic 52.8 12 0.0004 43.9 5.1 80 249-339 210-295 (1108)
415 2qt1_A Nicotinamide riboside k 52.8 2.7 9.2E-05 38.4 -0.2 20 59-78 20-39 (207)
416 3tqc_A Pantothenate kinase; bi 52.8 24 0.00081 34.9 6.7 15 63-77 95-109 (321)
417 1qf9_A UMP/CMP kinase, protein 52.8 6 0.00021 35.1 2.2 17 62-78 8-24 (194)
418 3dl0_A Adenylate kinase; phosp 52.7 6.2 0.00021 36.1 2.3 17 62-78 2-18 (216)
419 3iwh_A Rhodanese-like domain p 52.6 8.1 0.00028 31.1 2.7 38 263-300 53-90 (103)
420 4a2w_A RIG-I, retinoic acid in 52.6 22 0.00074 40.8 7.3 79 92-177 630-721 (936)
421 2r62_A Cell division protease 52.6 3.3 0.00011 39.5 0.4 19 60-78 44-62 (268)
422 2v54_A DTMP kinase, thymidylat 52.5 7.1 0.00024 35.2 2.7 20 59-78 3-22 (204)
423 2iyv_A Shikimate kinase, SK; t 52.3 7.3 0.00025 34.5 2.7 18 61-78 3-20 (184)
424 1zd8_A GTP:AMP phosphotransfer 52.3 6.2 0.00021 36.6 2.3 19 60-78 7-25 (227)
425 1z5z_A Helicase of the SNF2/RA 52.2 19 0.00066 34.5 5.9 95 69-178 93-193 (271)
426 2fsf_A Preprotein translocase 52.2 34 0.0012 38.3 8.4 54 265-324 114-171 (853)
427 1iy2_A ATP-dependent metallopr 52.2 6.3 0.00021 37.9 2.3 54 21-77 35-90 (278)
428 1xp8_A RECA protein, recombina 51.9 13 0.00045 37.5 4.8 46 53-103 61-112 (366)
429 1aky_A Adenylate kinase; ATP:A 51.8 7.3 0.00025 35.8 2.7 19 60-78 4-22 (220)
430 1in4_A RUVB, holliday junction 51.7 6.7 0.00023 38.9 2.5 18 61-78 52-69 (334)
431 2pez_A Bifunctional 3'-phospho 51.7 6.4 0.00022 34.8 2.1 19 59-77 4-22 (179)
432 4a2p_A RIG-I, retinoic acid in 51.6 19 0.00064 38.0 6.2 71 266-340 55-136 (556)
433 2plr_A DTMP kinase, probable t 51.6 6 0.00021 35.8 2.0 20 59-78 3-22 (213)
434 3tif_A Uncharacterized ABC tra 51.4 6 0.00021 37.2 2.0 18 59-76 30-47 (235)
435 2x8a_A Nuclear valosin-contain 51.3 6.5 0.00022 37.9 2.3 53 22-77 6-61 (274)
436 2pt5_A Shikimate kinase, SK; a 51.1 7 0.00024 34.0 2.3 17 62-78 2-18 (168)
437 2if2_A Dephospho-COA kinase; a 51.0 6.8 0.00023 35.4 2.3 17 62-78 3-19 (204)
438 2cdn_A Adenylate kinase; phosp 50.9 7 0.00024 35.3 2.3 18 61-78 21-38 (201)
439 1ukz_A Uridylate kinase; trans 50.8 6.9 0.00024 35.3 2.3 17 62-78 17-33 (203)
440 2jaq_A Deoxyguanosine kinase; 50.7 7 0.00024 35.1 2.3 17 62-78 2-18 (205)
441 1jjv_A Dephospho-COA kinase; P 50.6 7 0.00024 35.5 2.3 16 63-78 5-20 (206)
442 4a2q_A RIG-I, retinoic acid in 50.5 24 0.00081 39.6 7.1 70 266-339 296-376 (797)
443 1zak_A Adenylate kinase; ATP:A 50.2 6.9 0.00024 36.0 2.2 18 61-78 6-23 (222)
444 4anj_A Unconventional myosin-V 49.9 20 0.00069 41.4 6.3 56 23-78 98-162 (1052)
445 2yan_A Glutaredoxin-3; oxidore 49.7 55 0.0019 25.8 7.5 54 258-312 9-68 (105)
446 1ak2_A Adenylate kinase isoenz 49.6 7.9 0.00027 36.1 2.5 19 60-78 16-34 (233)
447 3auy_A DNA double-strand break 49.4 7 0.00024 39.5 2.3 15 62-76 27-41 (371)
448 3rc3_A ATP-dependent RNA helic 49.2 42 0.0014 36.8 8.6 73 96-180 323-401 (677)
449 1g8p_A Magnesium-chelatase 38 48.9 4.8 0.00016 39.9 0.9 19 60-78 45-63 (350)
450 3ipz_A Monothiol glutaredoxin- 48.7 68 0.0023 25.6 7.9 54 256-310 8-67 (109)
451 2pbr_A DTMP kinase, thymidylat 48.7 7.8 0.00027 34.4 2.3 16 63-78 3-18 (195)
452 2bbw_A Adenylate kinase 4, AK4 48.6 7.8 0.00027 36.4 2.3 19 60-78 27-45 (246)
453 3zyw_A Glutaredoxin-3; metal b 48.5 63 0.0022 26.0 7.7 53 257-310 7-65 (111)
454 1zu4_A FTSY; GTPase, signal re 48.4 7.1 0.00024 38.7 2.1 16 63-78 108-123 (320)
455 4a74_A DNA repair and recombin 48.3 7.2 0.00025 35.8 2.0 19 60-78 25-43 (231)
456 3gk5_A Uncharacterized rhodane 48.3 13 0.00044 30.0 3.3 39 263-301 52-90 (108)
457 2cbz_A Multidrug resistance-as 48.3 7.2 0.00025 36.7 2.0 18 59-76 30-47 (237)
458 3sr0_A Adenylate kinase; phosp 48.2 8.1 0.00028 35.5 2.3 16 63-78 3-18 (206)
459 2f1r_A Molybdopterin-guanine d 48.1 7.3 0.00025 34.7 1.9 16 62-77 4-19 (171)
460 3g5j_A Putative ATP/GTP bindin 48.0 26 0.00088 28.9 5.4 46 255-301 78-125 (134)
461 2i3b_A HCR-ntpase, human cance 48.0 9.5 0.00032 34.5 2.7 42 166-210 103-146 (189)
462 2wwf_A Thymidilate kinase, put 47.9 8.7 0.0003 34.8 2.5 20 59-78 9-28 (212)
463 2og2_A Putative signal recogni 47.7 14 0.00047 37.2 4.1 17 62-78 159-175 (359)
464 1yrb_A ATP(GTP)binding protein 47.7 11 0.00038 35.4 3.3 17 62-78 16-32 (262)
465 1e4v_A Adenylate kinase; trans 47.6 8 0.00027 35.4 2.2 17 62-78 2-18 (214)
466 3a4m_A L-seryl-tRNA(SEC) kinas 47.5 8.3 0.00028 36.7 2.3 18 61-78 5-22 (260)
467 1sgw_A Putative ABC transporte 47.5 8 0.00027 35.8 2.1 18 59-76 34-51 (214)
468 2z0h_A DTMP kinase, thymidylat 47.4 8.5 0.00029 34.4 2.3 16 63-78 3-18 (197)
469 1nn5_A Similar to deoxythymidy 47.2 9.1 0.00031 34.7 2.5 20 59-78 8-27 (215)
470 1uf9_A TT1252 protein; P-loop, 47.0 8.4 0.00029 34.6 2.2 17 62-78 10-26 (203)
471 2v9p_A Replication protein E1; 47.0 9.9 0.00034 37.4 2.8 18 59-76 125-142 (305)
472 3pxg_A Negative regulator of g 46.5 12 0.00039 39.3 3.5 19 60-78 201-219 (468)
473 3tlx_A Adenylate kinase 2; str 46.5 11 0.00037 35.4 3.0 19 60-78 29-47 (243)
474 3foj_A Uncharacterized protein 46.2 13 0.00043 29.5 2.9 38 263-300 53-90 (100)
475 2vli_A Antibiotic resistance p 46.1 7 0.00024 34.5 1.5 19 60-78 5-23 (183)
476 3be4_A Adenylate kinase; malar 45.9 10 0.00034 34.9 2.6 19 60-78 5-23 (217)
477 2ghi_A Transport protein; mult 45.8 8.3 0.00028 36.9 2.0 18 59-76 45-62 (260)
478 1gmx_A GLPE protein; transfera 45.8 23 0.00078 28.3 4.5 39 263-301 55-94 (108)
479 2xb4_A Adenylate kinase; ATP-b 45.7 9.3 0.00032 35.3 2.3 17 62-78 2-18 (223)
480 3gfo_A Cobalt import ATP-bindi 45.6 8.2 0.00028 37.3 2.0 18 59-76 33-50 (275)
481 2pze_A Cystic fibrosis transme 45.6 8.4 0.00029 36.0 2.0 18 59-76 33-50 (229)
482 3umf_A Adenylate kinase; rossm 45.5 9.4 0.00032 35.5 2.3 18 61-78 30-47 (217)
483 1rz3_A Hypothetical protein rb 45.5 9.3 0.00032 34.7 2.3 17 62-78 24-40 (201)
484 1gtv_A TMK, thymidylate kinase 45.3 4.5 0.00015 36.9 0.0 15 63-77 3-17 (214)
485 2ff7_A Alpha-hemolysin translo 45.2 8.4 0.00029 36.5 2.0 18 59-76 34-51 (247)
486 1tf5_A Preprotein translocase 45.1 57 0.0019 36.6 8.8 69 265-339 123-208 (844)
487 3eme_A Rhodanese-like domain p 45.1 12 0.00043 29.7 2.7 37 264-300 54-90 (103)
488 3nh6_A ATP-binding cassette SU 45.0 7.8 0.00027 38.1 1.7 17 60-76 80-96 (306)
489 3fmp_B ATP-dependent RNA helic 44.9 4.6 0.00016 42.2 0.0 70 93-173 333-406 (479)
490 4e22_A Cytidylate kinase; P-lo 44.6 11 0.00036 35.8 2.6 19 60-78 27-45 (252)
491 1vht_A Dephospho-COA kinase; s 44.5 9.9 0.00034 34.8 2.3 17 62-78 6-22 (218)
492 1g41_A Heat shock protein HSLU 44.5 10 0.00035 39.4 2.6 19 60-78 50-68 (444)
493 3qks_A DNA double-strand break 44.4 10 0.00035 34.6 2.3 16 62-77 25-40 (203)
494 2z83_A Helicase/nucleoside tri 44.0 13 0.00046 38.6 3.5 69 93-173 190-258 (459)
495 2pcj_A ABC transporter, lipopr 43.9 8.9 0.00031 35.7 1.9 18 59-76 29-46 (224)
496 1np6_A Molybdopterin-guanine d 43.9 9.9 0.00034 33.9 2.1 15 62-76 8-22 (174)
497 1mv5_A LMRA, multidrug resista 43.8 8 0.00027 36.5 1.6 18 59-76 27-44 (243)
498 4edh_A DTMP kinase, thymidylat 43.7 11 0.00039 34.7 2.6 21 58-78 4-24 (213)
499 3f9v_A Minichromosome maintena 43.6 10 0.00035 41.0 2.6 16 62-77 329-344 (595)
500 4g1u_C Hemin import ATP-bindin 43.5 9.3 0.00032 36.7 2.0 18 59-76 36-53 (266)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-64 Score=536.26 Aligned_cols=368 Identities=34% Similarity=0.575 Sum_probs=336.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC---CCCeEEE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRAL 97 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~---~~g~~~L 97 (569)
.-.+|++++|++.++++|.++||..|||+|.++||.++.|+|+++.|+||||||++|++|+++.+..... ..++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 3458999999999999999999999999999999999999999999999999999999999999876432 3467899
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
||+|||+|+.|+++.+++++...++++..++||.+...+...+..+++|+|+|||+|.+++.+ ..+.+.++++||+|||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEA 212 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccH
Confidence 999999999999999999998889999999999999988888889999999999999999986 4577899999999999
Q ss_pred CccCCCChHHHHHHHHHhc--CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHH
Q 008345 178 DCLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 178 h~l~~~~f~~~l~~i~~~~--~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (569)
|++++++|..++..++..+ +..+|+++||||+|+.+..++..++.++..+.+.........+.+.++.+....|...|
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHH
Confidence 9999999999999999885 67899999999999999999999999999888877666677888999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
..++... ..++||||+|++.++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 293 ~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 293 IEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 9988765 3459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCccCC
Q 008345 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAA 392 (569)
Q Consensus 336 ~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~-~e~~~~~~l~~~l~~~~~~~ 392 (569)
++||+||+|.++.+|+||+||+||+|+.|.+++|+++ ++...+.++...+.......
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~v 427 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTV 427 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999995 46667777766665444433
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.5e-60 Score=501.04 Aligned_cols=368 Identities=32% Similarity=0.562 Sum_probs=338.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+|++|+|++.++++|...||..|+|+|.++++.++.|+|+++.++||||||++|++|+++.+... ..+.++||++|
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAP 113 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcC
Confidence 4579999999999999999999999999999999999999999999999999999999999887532 24578999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|++|+.|+.+.++.++...++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999999999999999999988888888899999999999999986 46778899999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh-HHHHHHHHHH
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMIR 260 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~ll~ 260 (569)
+++|...+..++..++..+|++++|||+|+.+..+...++.+|..+...........+.+.+..+.... +...+..++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 999999999999999999999999999999998899999999988877666666667777777776544 7788888887
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~ 340 (569)
.. ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 350 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE
Confidence 65 4579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 008345 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 341 ~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~ 394 (569)
||+|.++..|+||+||+||.|++|.+++|++++|...+.+++.+++..+...|.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999988776653
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-59 Score=499.25 Aligned_cols=369 Identities=31% Similarity=0.532 Sum_probs=330.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC---------
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------- 90 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--------- 90 (569)
+...+|++++|++.++++|..+||..|||+|.+++|.++.|+|+++.||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 44567999999999999999999999999999999999999999999999999999999999998865421
Q ss_pred -------CCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC
Q 008345 91 -------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163 (569)
Q Consensus 91 -------~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~ 163 (569)
..++++||++||++|+.|+++.++.++...++++..++||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 1246799999999999999999999988889999999999999988888888999999999999999886 45
Q ss_pred CCCCCeeEEEEeCCCccCCCChHHHHHHHHHh--cCC--CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCc
Q 008345 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (569)
Q Consensus 164 ~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~--~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 239 (569)
+.+.++++||+||||++.+++|...+..++.. ++. .+|++++|||+|+.+..++..++.++..+...........+
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 77899999999999999999999999999875 333 67899999999999999999999999888877666667788
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 008345 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (569)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~I 319 (569)
.+.+..+....+...+..++... ..+.++||||+|+.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred eEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 88888898889998888888754 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCcc
Q 008345 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 320 LV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.|...+.++..++.....
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999888888777754433
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.8e-57 Score=480.59 Aligned_cols=371 Identities=30% Similarity=0.511 Sum_probs=334.0
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEE
Q 008345 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (569)
Q Consensus 18 ~~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~L 97 (569)
......+|++++|++.++++|.++||..|+|+|.++++.++.++++++.+|||||||++|++|++..+... ..+.++|
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~l 93 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQAL 93 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEE
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999887543 2356799
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
|++||++|+.|+.+.++.+....++.+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++||+|||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCc
Confidence 999999999999999999998889999999999998888777778999999999999998876 4567899999999999
Q ss_pred CccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHH
Q 008345 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (569)
Q Consensus 178 h~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (569)
|++.+.+|...+..++..++...|++++|||+|..+..+....+.+|..+..... .....+...+..+....+...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHH
Confidence 9999988999999999999999999999999999999999998888876655433 334566777777888888888888
Q ss_pred HHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE
Q 008345 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~ 337 (569)
++... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 252 ~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 252 LFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 88764 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCC
Q 008345 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 338 VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~ 394 (569)
||++|+|.++..|+||+||+||.|+.|.++++++++|...+..++..++.++...|.
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 999999999999999999999999999999999999999999999999988876653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.3e-58 Score=485.28 Aligned_cols=369 Identities=33% Similarity=0.577 Sum_probs=323.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+|+++++++.+++.|.+.||..|+|+|.++++.++.|+|+++.|+||||||++|++|+++.+.... .+.++||++|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--KATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--CSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--CceeEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999999999998876532 3567999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
|++|+.|+.+.++.++...++.+..++||.....+...+. .+++|+|+||++|++++.. ..+.+.++++||+||||++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHh
Confidence 9999999999999999889999999999999888777766 7899999999999999987 5677889999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh-HHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMI 259 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~ll 259 (569)
.+++|...+..++..++..+|++++|||+++.+..+...++.++..+...........+.+.+..+...+ +...+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877776666677777777766554 777777777
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
... ..+++||||+++++++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 654 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCCCh
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
+||+|.++..|+||+||+||.|++|.+++++++++...+.+++.+++..+...|..
T Consensus 354 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999888776643
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.5e-56 Score=474.50 Aligned_cols=366 Identities=31% Similarity=0.539 Sum_probs=325.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Li 98 (569)
...+|++++|++.++++|.+.||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~li 100 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 100 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEE
Confidence 3468999999999999999999999999999999999997 9999999999999999999999987653 23568999
Q ss_pred EcCcHHHHHHHHHHHHHhccc-CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 99 LSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
++||++|+.|+++.+++++.. .++.+....++...... ....++|+|+||+++.+++...+.+.+.++++||+|||
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 999999999999999998776 47888888888765432 14568999999999999997766677899999999999
Q ss_pred CccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHH
Q 008345 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAAL 255 (569)
Q Consensus 178 h~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L 255 (569)
|++.+ .++...+..+...++..+|++++|||+++.+..++...+.++..+.+.........+.+.+..+.. ..+...+
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHH
Confidence 99987 788999999999999999999999999999999999999999988888777777777777777665 5677777
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v 335 (569)
..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 258 ~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 258 CNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 7777665 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC------CChhHHHHHhhccccCCCccEEEEEecccc-HHHHHHHHHHhCCCccCCC
Q 008345 336 DNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 336 ~~VI~~d~p------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e-~~~~~~l~~~l~~~~~~~~ 393 (569)
++||+||+| .+...|+||+||+||.|+.|.+++++++.+ ..++..++..++..+...+
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 999999999 467899999999999999999999999764 7888889988888776654
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.1e-56 Score=469.12 Aligned_cols=370 Identities=29% Similarity=0.503 Sum_probs=329.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
.+.+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||+|||++|++|++..+... ..+.++||++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~ 83 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMC 83 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEEC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999887543 2356899999
Q ss_pred CcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
||++|+.|+.+.++++.... ++++..++||.....+...+. ..++|+|+||+++.+++.. ..+.+.++++||+||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHH
Confidence 99999999999999987765 899999999998877766655 4589999999999998876 45678999999999999
Q ss_pred ccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccc-cCCCceEEEEEcchhhHHHHHH
Q 008345 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 179 ~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
++.+ .++...+..++...+..+|++++|||+++.+..++..++.+|..+....... ....+...+..+....+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 9988 4788889999999999999999999999999999999999988777655433 3456777788888888998888
Q ss_pred HHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC
Q 008345 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~ 336 (569)
.++... .+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 888765 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCccCCCCh
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~~~~~~l~~~l~~~~~~~~~~ 395 (569)
+||++++|.++..|+||+||+||.|+.|.+++++++. +..++.+++..++.++...|..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999986 4567788888888877766543
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9e-56 Score=460.77 Aligned_cols=360 Identities=34% Similarity=0.638 Sum_probs=328.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
...+|++++|++.+.++|.++||..|+|+|.++++.++.+ +++++.+|||||||++|++|+++.+... .+.++||+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil 80 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIIL 80 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEE
Confidence 4568999999999999999999999999999999999998 7999999999999999999999876543 46789999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+|+++|+.|+.+.++.+....++.+..++||.....+...+. +++|+|+||+++.+.+.. ..+.+.++++||+||||.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchH
Confidence 999999999999999998888899999999998877666554 799999999999998876 456789999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
+.+++|...+..++..++...+++++|||+++....+...++.++..+.... ...+...+..+...++...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888876665432 346777888888888888888877
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
. ..+.++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 5 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCC
Q 008345 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (569)
Q Consensus 340 ~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~ 392 (569)
++++|.++..|+||+||+||.|++|.+++++++.|...+..++..++.++...
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999999999988776643
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.8e-55 Score=461.72 Aligned_cols=363 Identities=30% Similarity=0.559 Sum_probs=319.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
..+|+++||++.++++|.++||..|+|+|.++++.++.+ +++++.||||||||++|++|++..+... ..+.++||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICL 81 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEE
Confidence 468999999999999999999999999999999999998 9999999999999999999999887643 245689999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||++|+.|+++.+++++...++.+...+++...... ..+++|+|+||+++.+.+.. ..+.+.++++||+||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 9999999999999999998889998888887643321 34789999999999998876 457789999999999999
Q ss_pred cCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHH
Q 008345 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (569)
Q Consensus 180 l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (569)
+.+ .++...+..+...++...|++++|||+++.+..+....+.++..+...........+...+..+.. ..+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 887 789999999999999999999999999999999999999998888777766666777777777654 445555555
Q ss_pred HHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE
Q 008345 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~ 337 (569)
++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 LYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 55433 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHhhccccCCCccEEEEEeccc-cHHHHHHHHHHhC-CCccCCC
Q 008345 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLS-KPIRAAP 393 (569)
Q Consensus 338 VI~~d~p~------s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~~~~~~l~~~l~-~~~~~~~ 393 (569)
||+||+|. ++..|+||+||+||.|+.|.+++++.+. +...+..++.+++ ..+...|
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999998 9999999999999999999999999874 5566777777776 4444433
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.9e-56 Score=493.15 Aligned_cols=371 Identities=33% Similarity=0.511 Sum_probs=314.4
Q ss_pred CCCCCCCCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--C
Q 008345 20 SKSGGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--Q 91 (569)
Q Consensus 20 ~~~~~f~~l~----l~~~~~~~l~~~g~~~~t~iQ~~~i~~il--~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~ 91 (569)
....+|+++. |+++++++|..+||..|||+|.++|+.++ .++|+++.||||||||++|++|+++.+..... .
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3455677775 99999999999999999999999999999 78999999999999999999999999876432 2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcc----cCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSL 166 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~----~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l 166 (569)
.+.++|||+||++|+.|+.+.++.+.. ...+.+..++||.....+...+. .+++|+|+||++|++++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 356899999999999999999998753 34578889999999888777664 4899999999999998876434467
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcC-------CCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccc----cc
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-------ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KI 235 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~-------~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~----~~ 235 (569)
.++++|||||||++++++|...+..++..++ ..+|+++||||+|+.+..++..++.++..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999999988887764 367999999999999999999999988776654322 22
Q ss_pred CCCceEEEEEcch-hhHHHHHHHHHHHh---cCCCCcEEEEEcChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHH
Q 008345 236 SPDLKLAFFTLRQ-EEKHAALLYMIREH---ISSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIH 308 (569)
Q Consensus 236 ~~~~~~~~~~~~~-~~k~~~L~~ll~~~---~~~~~~~IIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~l~~~~R~~~ 308 (569)
...+.+.+..... ..+...++..+... ...+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 3345555555443 23333333333222 145789999999999999999999876 8999999999999999999
Q ss_pred HHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCC
Q 008345 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (569)
Q Consensus 309 l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~ 388 (569)
++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.|..++..++...+.+
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred cc
Q 008345 389 IR 390 (569)
Q Consensus 389 ~~ 390 (569)
+.
T Consensus 414 ~~ 415 (579)
T 3sqw_A 414 IA 415 (579)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.6e-58 Score=496.63 Aligned_cols=363 Identities=31% Similarity=0.537 Sum_probs=181.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
.+|++++|++.++++|.++||..|||+|.+++|.++.+ +++++.|+||||||++|++|+++.+... ..++++|||+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~ 169 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCLS 169 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEEEC
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEEEe
Confidence 48999999999999999999999999999999999987 9999999999999999999999887653 2355899999
Q ss_pred CcHHHHHHHHHHHHHhccc-CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 101 PTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~-~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
||++|+.|+++.++.++.. .++.+...+++...... ...+++|+|+||++|++++.+.+.+++.++++|||||||+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 9999999999999998775 46788888887765432 1346799999999999999876678889999999999999
Q ss_pred cCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHH
Q 008345 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (569)
Q Consensus 180 l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (569)
+++ .+|...+..+...++..+|+++||||++..+..++..++.+|..+.+.........+.+.+..+.. ..+...+..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 987 689999999999999999999999999999999999999999998887776666677777766654 456666666
Q ss_pred HHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE
Q 008345 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~ 337 (569)
++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 327 ~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 327 LYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 66544 4679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHhhccccCCCccEEEEEecccc-HHHHHHHHHHhCCCccCC
Q 008345 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAA 392 (569)
Q Consensus 338 VI~~d~p~------s~~~~~qrvGR~gR~g~~G~~i~~v~~~e-~~~~~~l~~~l~~~~~~~ 392 (569)
||+||+|. +...|+||+||+||+|+.|.+++|+++.+ ..++..++.+++..+...
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 99999994 56899999999999999999999999765 777777777777665544
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.2e-55 Score=485.80 Aligned_cols=368 Identities=32% Similarity=0.510 Sum_probs=310.4
Q ss_pred CCCCCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--CCCe
Q 008345 23 GGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGV 94 (569)
Q Consensus 23 ~~f~~l~----l~~~~~~~l~~~g~~~~t~iQ~~~i~~il--~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~~g~ 94 (569)
.+|+++. |+++++++|.++||..|||+|.++|+.++ .++|+++.||||||||++|++|+++.+..... ..+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3465554 99999999999999999999999999999 67899999999999999999999999876532 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhcc----cCCCeEEEEEcCCCHHHHHHHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 95 RALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 95 ~~Lil~PtreLa~Q~~~~~~~~~~----~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
++|||+||++|+.|+++.++.+.. ...+.+..++||.....++..+ ..+++|+|+||++|++++.+.....++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 899999999999999999988643 2356788999999888777666 45899999999999998876433457889
Q ss_pred eEEEEeCCCccCCCChHHHHHHHHHhcC-------CCCcEEEEEecCChHHHHHHHhcCCCCeeeeecccc----ccCCC
Q 008345 170 EYVVFDEADCLFGMGFAEQLHKILGQLS-------ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KISPD 238 (569)
Q Consensus 170 ~~iViDEah~l~~~~f~~~l~~i~~~~~-------~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~----~~~~~ 238 (569)
++|||||||++++++|...+..++..++ ..+|+++||||+|+.+..++..++.++..+.+.... .....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 9999999999999999999988877653 367999999999999999999999988777654322 22334
Q ss_pred ceEEEEEcch-hhHHHHHHHHHHHh---cCCCCcEEEEEcChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHHHHH
Q 008345 239 LKLAFFTLRQ-EEKHAALLYMIREH---ISSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSR 311 (569)
Q Consensus 239 ~~~~~~~~~~-~~k~~~L~~ll~~~---~~~~~~~IIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~l~~~~R~~~l~~ 311 (569)
+.+.+..... ..+...++..+... ...+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 5555554443 23333333333222 245789999999999999999999876 8999999999999999999999
Q ss_pred HhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCcc
Q 008345 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 312 F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.+++|+.+.|..++..++...+.++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887776554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.2e-57 Score=474.72 Aligned_cols=368 Identities=32% Similarity=0.550 Sum_probs=188.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
+...+|++++|++.++++|...||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil 95 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 95 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999887653 245689999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||++|+.|+.+.+..+....++++..++|+.........+. +++|+|+||+++.+.+.. ..+.+.++++||+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHH
Confidence 999999999999999998888999999999998876665544 689999999999998876 456788999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhh-HHHHHHHH
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYM 258 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~l 258 (569)
+.+.+|...+..++..+++..|++++|||+++.+..+...++.+|..+...........+...+..+.... +...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------
T ss_pred hhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777665555555666555555443 55566666
Q ss_pred HHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE
Q 008345 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 259 l~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V 338 (569)
+... ...++||||+++++++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 254 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 254 YDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 5543 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 339 I~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
|++++|.++..|+||+||+||.|++|.++++++++|...+..++.+++.++...|
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp -------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 9999999999999999999999999999999999999999998888877665444
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-52 Score=432.21 Aligned_cols=335 Identities=35% Similarity=0.606 Sum_probs=292.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~ 109 (569)
|++.+.++|.++||..|+|+|.++++.+++++++++.+|||||||++|++|+++. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999864 46799999999999999
Q ss_pred HHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHH
Q 008345 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (569)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l 189 (569)
++.+++++...++++..++|+.....+...+. +++|+|+||++|.+.+.. ..+.+.++++||+||||++.+++|...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999999888999999999998887776654 499999999999998876 4567889999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 008345 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (569)
Q Consensus 190 ~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 269 (569)
..++...+...+++++|||+|+.+......++.++..+... .....+...+..+....+. ....+.. ..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 223 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRE--NKDKGV 223 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHT--CCCSSE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHh--CCCCcE
Confidence 99999999999999999999999999999888887766432 2233455666665544332 2244433 367899
Q ss_pred EEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhH
Q 008345 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (569)
Q Consensus 270 IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~ 349 (569)
||||+++++++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 999999999999988876 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhC
Q 008345 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (569)
Q Consensus 350 ~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~ 386 (569)
|+||+||+||.|+.|.+++|+. .|...+.+++..++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 78778877766554
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-52 Score=453.79 Aligned_cols=362 Identities=26% Similarity=0.482 Sum_probs=267.4
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.|...++++.+++.+.+.||..|+|+|.++++.++.+ +++++.|+||||||++|++|+++.+... ..+.++||++|
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P 197 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAP 197 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEEC
Confidence 3566788999999999999999999999999999998 9999999999999999999999988654 23568999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
+++|+.|+.+.++.++...++.+....++..... ...+++|+|+||+++++.+.. ..+.+.++++||+||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 9999999999999998877777777666654332 234799999999999998876 45778999999999999998
Q ss_pred C-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch-hhHHHHHHHHH
Q 008345 182 G-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMI 259 (569)
Q Consensus 182 ~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ll 259 (569)
+ .++...+..++..++...|++++|||+++.+..+...++.++..+.+.........+...+..+.. ..+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 689999999999999999999999999999999999999999888777666666666666666644 45566666666
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 543 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhHHHHHhhccccCCCccEEEEEecc-ccHHHHHHHHHHhCCCccCCCC
Q 008345 340 NWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 340 ~~d~p------~s~~~~~qrvGR~gR~g~~G~~i~~v~~-~e~~~~~~l~~~l~~~~~~~~~ 394 (569)
++|.| .++..|+||+||+||.|+.|.+++|+.+ ++...+..++.+++.++...+.
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999 7899999999999999999999999985 5667788888888887776553
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.4e-50 Score=442.79 Aligned_cols=342 Identities=18% Similarity=0.245 Sum_probs=280.4
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 24 GFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|+++++++.+.+.|++ .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +.++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 34568999999999998 59999999999999999999999999999999999999999752 3479999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH------cCCCCEEEECcHHHH------HHHhhcCCCCCCCee
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGRLM------HHLSEVEDMSLKSVE 170 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l------~~~~~IiV~Tp~rl~------~~l~~~~~~~l~~l~ 170 (569)
++|+.|+.+.+..+ ++.+..+.|+....+....+ ..+++|+|+||++|. +.+.. ...+.+++
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999998887 58889999998876554322 457999999999874 33332 24467899
Q ss_pred EEEEeCCCccCCCC--hHHHHHH--HHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEc
Q 008345 171 YVVFDEADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (569)
Q Consensus 171 ~iViDEah~l~~~~--f~~~l~~--i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (569)
+|||||||+++++| |...+.. ++....+..|++++|||+++.+...+...+..+..+.+.. ....+++...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeC
Confidence 99999999999987 5544433 3444445789999999999988877777666544333322 22233444333332
Q ss_pred c--hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 247 R--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 247 ~--~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
. ...+...+..++... ..+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 234455666666433 2578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 325 v~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
++++|||+|++++||+|++|.++..|+||+||+||.|++|.|++|+++.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887766543
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.4e-51 Score=431.69 Aligned_cols=325 Identities=20% Similarity=0.262 Sum_probs=267.1
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 008345 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 34 ~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
+.+.+++ .|| .|||+|.++++.++.|+|+++.||||||||++|++|++..+. .+.++|||+||++|+.|+++.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHH
Confidence 4444544 477 599999999999999999999999999999999999887662 467899999999999999999
Q ss_pred HHHhcccCCCeEEEEEcCCCH---HHHHHHHcCC-CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-------
Q 008345 113 TKELGRYTDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF------- 181 (569)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~------- 181 (569)
++.++. .++++..++||.+. ..++..+..+ ++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhh
Confidence 999987 88999999999998 5555556554 99999999999988875 667899999999998654
Q ss_pred ---C-CChHHH-HHHHHHhcC-----------CCCcEEEEEec-CChHHH-HHHHhcCCCCeeeeeccccccCCCceEEE
Q 008345 182 ---G-MGFAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (569)
Q Consensus 182 ---~-~~f~~~-l~~i~~~~~-----------~~~q~ll~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 243 (569)
+ ++|..+ +..++..++ ..+|++++||| +|..+. .+....+. +.+.........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 3 777777 788888877 88999999999 565433 22222221 22223333445666666
Q ss_pred EEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCce-eecCCCCHHHHHHHHHHHhcCCceEEEE
Q 008345 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV 322 (569)
Q Consensus 244 ~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~-~i~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (569)
..+ ++...+..++... +.++||||+|+.+++.++..|...|+.+. .+||. .|. ++.|++|+++||||
T Consensus 236 ~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 236 ISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp ESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred ecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 655 3555667777663 48999999999999999999999999998 89985 344 99999999999999
Q ss_pred ----eccccccCCCCC-CCEEEEcCCC--CChhHHHHHhhccccCC----CccEEEEEeccccHHHHHHHHHHhC
Q 008345 323 ----TDVAARGIDIPL-LDNVINWDFP--PKPKIFVHRVGRAARAG----RTGTAFSFVTSEDMAYLLDLHLFLS 386 (569)
Q Consensus 323 ----Tdv~arGlDip~-v~~VI~~d~p--~s~~~~~qrvGR~gR~g----~~G~~i~~v~~~e~~~~~~l~~~l~ 386 (569)
|+++++|+|+|+ +++||+||+| .++..|+||+||+||.| +.|.+++|+ +|...+..++..++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 589999999 66677777777666
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.7e-49 Score=431.78 Aligned_cols=338 Identities=21% Similarity=0.329 Sum_probs=279.6
Q ss_pred CCCCCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 23 GGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~-~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..|++|+|++.+.+.|++ .||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+||++|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 369999999999999998 79999999999999999999999999999999999999999843 235899999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH----HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~----~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
+++|+.|+.+.++.+ ++.+..+.++.+...... ...+.++|+|+||++|...... ..+...++++||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEA 148 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999988875 578888888887665432 2346799999999999532111 1234578999999999
Q ss_pred CccCCCC--hHH---HHHHHHHhcCCCCcEEEEEecCChHHHHHHH--hcCCCCeeeeeccccccCCCceEEEEEcchhh
Q 008345 178 DCLFGMG--FAE---QLHKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (569)
Q Consensus 178 h~l~~~~--f~~---~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~--~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (569)
|++.++| |.. .+..+...+| +.+++++|||+++.+...+. ..+.++..+.... ..+++ .+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~~l--~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCTTE--EEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCCce--EEEEEeCCC
Confidence 9999887 533 3444455554 68899999999987655333 3345554443221 22333 344445566
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
+...+..++... .+.++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 777888888765 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 331 Dip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
|+|++++||+|++|.++..|+||+||+||.|++|.+++++++.|...+..+
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988766554
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.5e-49 Score=437.16 Aligned_cols=323 Identities=20% Similarity=0.259 Sum_probs=262.0
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.+|| .|||+|..++|.++.|+ |+.++||||||++|.+|++.... .|++++||+||++||.|+.+++..+.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 89999999999999998 99999999999999999985432 2567999999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccC-CCC--------
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GMG-------- 184 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~-~~~-------- 184 (569)
.|+++.+++||.+...+... .+++|+|||||+| ++++... +.+.+..+.++|+||||+|+ +++
T Consensus 151 lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 99999999999887654433 4699999999999 7766542 23567899999999999988 664
Q ss_pred -------hHHHHHHHHHhcC---------CCCcEE-----------------EEEecCChH---HHHH--HHhcCC-CCe
Q 008345 185 -------FAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSA---LAEF--AKAGLR-DPH 225 (569)
Q Consensus 185 -------f~~~l~~i~~~~~---------~~~q~l-----------------l~SAT~~~~---~~~~--~~~~l~-~~~ 225 (569)
|..++..|+..++ ..+|++ |||||+|.. +... ++..+. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 7889999999997 478888 999998743 3222 222222 111
Q ss_pred ee-------eec-----------------------------cccc-----------------------------------
Q 008345 226 LV-------RLD-----------------------------VDTK----------------------------------- 234 (569)
Q Consensus 226 ~i-------~~~-----------------------------~~~~----------------------------------- 234 (569)
.+ .++ .+..
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 11 000 0000
Q ss_pred ------cC---CCce---EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCH
Q 008345 235 ------IS---PDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (569)
Q Consensus 235 ------~~---~~~~---~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~ 302 (569)
.+ +... ..++.+...+|..++...+......+.++||||+|++.++.++..|...|+++..+||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 00 0000 11445567889999999887655567899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCC--------CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip--------~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
.+|..+...|+.| .|+||||+|+||+||+ ++.+||||+.|.+.+.|+||+|||||+|.+|.+++|++.+|
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887766666655 6999999999999999 78899999999999999999999999999999999999876
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.6e-47 Score=417.62 Aligned_cols=332 Identities=19% Similarity=0.244 Sum_probs=208.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
++...|||+|.++++.++.|+|+++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34557999999999999999999999999999999999999999877644447789999999999999999999998888
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCChHHHHH-HHHHh---
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ--- 195 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~f~~~l~-~i~~~--- 195 (569)
++++..++|+.....++..+..+++|+|+||++|.+++.. ..+ .+.++++||+||||++.+++....+. ..+..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh-CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 9999999999987776666777899999999999999976 344 78999999999999999887544432 22222
Q ss_pred -cCCCCcEEEEEecCCh-----------HHHHHHHhcCCCCeeeeecccc----ccCCCceEEEEEcc------------
Q 008345 196 -LSENRQTLLFSATLPS-----------ALAEFAKAGLRDPHLVRLDVDT----KISPDLKLAFFTLR------------ 247 (569)
Q Consensus 196 -~~~~~q~ll~SAT~~~-----------~~~~~~~~~l~~~~~i~~~~~~----~~~~~~~~~~~~~~------------ 247 (569)
..+..|++++|||++. .+..+... +............ .........+..+.
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY-LDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHH-HTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHh-cCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1456899999999953 11111111 1101000000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008345 248 -------------------------------------------------------------------------------- 247 (569)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (569)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred -------------------------------------------------hhhHHHHHHHHHHHhc--CCCCcEEEEEcCh
Q 008345 248 -------------------------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (569)
Q Consensus 248 -------------------------------------------------~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~ 276 (569)
...|...|..+|.+.. ..+.++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 1235556666666544 5678999999999
Q ss_pred hhHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccccCCCCCCCEEEEcCC
Q 008345 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (569)
Q Consensus 277 ~~~~~l~~~L~~~------------~~~~~~i~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~~VI~~d~ 343 (569)
..++.+...|... |.....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETC
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999875 4455566788999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 344 p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
|+++..|+||+|| ||. +.|.++.|+++.+..
T Consensus 481 p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 481 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp CSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 9999999999999 999 889999999987654
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.4e-47 Score=443.06 Aligned_cols=321 Identities=20% Similarity=0.253 Sum_probs=264.6
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
..||. |||+|.+++|.++.|+|+++.||||||||++|++|++..+. .+.++|||+||++||.|+++.++.++ .
T Consensus 74 ~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----~~~~~Lil~PtreLa~Q~~~~l~~l~-~ 146 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLERLQKLA-D 146 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHHHHTTS-C
T ss_pred hcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----cCCeEEEEechHHHHHHHHHHHHHhh-C
Confidence 46995 99999999999999999999999999999999988887762 46789999999999999999999988 7
Q ss_pred CCCeEEEEEcCCCH---HHHHHHHcCC-CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC-----------CC
Q 008345 120 TDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------MG 184 (569)
Q Consensus 120 ~~l~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~-----------~~ 184 (569)
.++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +++.++++|||||||++.. +|
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 88999999999988 5666667665 99999999999988875 6678999999999976554 88
Q ss_pred hHHH-HHHHHHhcC-----------CCCcEEEEEec-CChHHHH-HHHhcCCCCeeeeeccccccCCCceEEEEEcchhh
Q 008345 185 FAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (569)
Q Consensus 185 f~~~-l~~i~~~~~-----------~~~q~ll~SAT-~~~~~~~-~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (569)
|..+ +..++..+| ..+|+++|||| .|..+.. +....+. +.+........++.+.++.+ +
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8888 889998887 88999999999 5655442 3333222 33333444556677777665 4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCce-eecCCCCHHHHHHHHHHHhcCCceEEEE----ecc
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV----TDV 325 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~-~i~g~l~~~~R~~~l~~F~~g~~~ILV~----Tdv 325 (569)
+...|..++... +.++||||+|+..++.++..|...|+.+. .+||. |.. ++.|++|+.+|||| |++
T Consensus 297 k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 297 SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 556667777663 48999999999999999999999999998 99992 555 99999999999999 999
Q ss_pred ccccCCCCC-CCEEEEcCCCC-----------------------------------------------------------
Q 008345 326 AARGIDIPL-LDNVINWDFPP----------------------------------------------------------- 345 (569)
Q Consensus 326 ~arGlDip~-v~~VI~~d~p~----------------------------------------------------------- 345 (569)
++||+|+|+ +++|||||+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~ 447 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRG 447 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCS
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccce
Confidence 999999999 99999999998
Q ss_pred -------------ChhHHHHHhhccccCCCcc--EEEEEeccccHHHHHHHHHHhC
Q 008345 346 -------------KPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLS 386 (569)
Q Consensus 346 -------------s~~~~~qrvGR~gR~g~~G--~~i~~v~~~e~~~~~~l~~~l~ 386 (569)
++.+|+||+|||||.|..| .+++++..+|...+..++..++
T Consensus 448 l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 448 VVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965432 3444555577777777766654
No 22
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=6.6e-47 Score=417.74 Aligned_cols=340 Identities=20% Similarity=0.263 Sum_probs=244.2
Q ss_pred CCCCCCCCCCCHHHHHHHHH-----CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeE
Q 008345 21 KSGGFESLNLSPNVFRAIKR-----KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~-----~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~ 95 (569)
.+.+++++ | ++.+..+.+ +|. .|||+|..++|.++.|+ ++.++||||||++|++|++.... .|.+
T Consensus 48 ~g~~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----~g~~ 117 (853)
T 2fsf_A 48 KGEVLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----TGKG 117 (853)
T ss_dssp TTCCHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----TSSC
T ss_pred cCCChhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----cCCc
Confidence 44456654 3 344443333 465 69999999999999998 99999999999999999986543 2567
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcC-----CCCCCCe
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSV 169 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~-----~~~l~~l 169 (569)
++||+|||+||.|+++++..+.++.++++.+++||.+.... .+..+++|+|||||+| ++++...- .+.+.++
T Consensus 118 vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l 195 (853)
T 2fsf_A 118 VHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKL 195 (853)
T ss_dssp CEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSC
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCC
Confidence 99999999999999999999999999999999999886543 3344799999999999 88887531 2567899
Q ss_pred eEEEEeCCCccC-CC---------------ChHHHHHHHHHhcCC--------------------CCcEE----------
Q 008345 170 EYVVFDEADCLF-GM---------------GFAEQLHKILGQLSE--------------------NRQTL---------- 203 (569)
Q Consensus 170 ~~iViDEah~l~-~~---------------~f~~~l~~i~~~~~~--------------------~~q~l---------- 203 (569)
.++|+||||+|+ ++ +|...+..|+..++. .+|++
T Consensus 196 ~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e 275 (853)
T 2fsf_A 196 HYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIE 275 (853)
T ss_dssp CEEEESCHHHHTTTTTTCEEEEEEC-------------------------------------------------------
T ss_pred cEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHH
Confidence 999999999998 44 467888899988874 56654
Q ss_pred --------------EEEecCChHHHHH-----HHhcCC--------CC-----------------------------eee
Q 008345 204 --------------LFSATLPSALAEF-----AKAGLR--------DP-----------------------------HLV 227 (569)
Q Consensus 204 --------------l~SAT~~~~~~~~-----~~~~l~--------~~-----------------------------~~i 227 (569)
|||||+|.....+ ++..+. ++ ..+
T Consensus 276 ~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v 355 (853)
T 2fsf_A 276 ELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGV 355 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccc
Confidence 8999976422211 111110 01 111
Q ss_pred eeccccccCCCce-----------------------------------------------EEEEEcchhhHHHHHHHHHH
Q 008345 228 RLDVDTKISPDLK-----------------------------------------------LAFFTLRQEEKHAALLYMIR 260 (569)
Q Consensus 228 ~~~~~~~~~~~~~-----------------------------------------------~~~~~~~~~~k~~~L~~ll~ 260 (569)
.+..+......+. ..++.+...+|..++...+.
T Consensus 356 ~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~ 435 (853)
T 2fsf_A 356 QIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIK 435 (853)
T ss_dssp -CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHH
T ss_pred eecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHH
Confidence 1111111000011 11345667889999999998
Q ss_pred HhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCC-----
Q 008345 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----- 335 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v----- 335 (569)
.....+.++||||+|+..++.++..|...|+++..+||++.+.++..+.+.|+.| .|+||||+|+||+||+..
T Consensus 436 ~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~ 513 (853)
T 2fsf_A 436 ERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQA 513 (853)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHH
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHh
Confidence 7666788999999999999999999999999999999999888888888889888 699999999999999974
Q ss_pred --------------------------------CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 336 --------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 336 --------------------------------~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
.+||+++.|.+.+.|+||+|||||+|.+|.+++|++.+|
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 514 EVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 599999999999999999999999999999999999876
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.2e-46 Score=408.74 Aligned_cols=334 Identities=21% Similarity=0.233 Sum_probs=236.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeE
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (569)
.|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++.+....++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 49999999999999999999999999999999999999998876444477899999999999999999999988889999
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHH-HHHHHHhc-----CC
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQL-----SE 198 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~-l~~i~~~~-----~~ 198 (569)
..++|+.....++..+..+++|+|+||++|.+++.......+.++++||+||||++.+.+.... +...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 9999999777666666678999999999999999863322788999999999999998764333 32333332 24
Q ss_pred CCcEEEEEecCChH-----------HHHHHHhcCCCCeeeeeccc----cccCCCceEEEEEcc----------------
Q 008345 199 NRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLR---------------- 247 (569)
Q Consensus 199 ~~q~ll~SAT~~~~-----------~~~~~~~~l~~~~~i~~~~~----~~~~~~~~~~~~~~~---------------- 247 (569)
..|++++|||++.. +..+.. .+..+.+...... ..........+..+.
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 57999999999542 111111 1221111110000 000000000110000
Q ss_pred --------------------------------------------------------------------------------
Q 008345 248 -------------------------------------------------------------------------------- 247 (569)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (569)
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence
Q ss_pred ----------------------------------------------hhhHHHHHHHHHHHhc--CCCCcEEEEEcChhhH
Q 008345 248 ----------------------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHV 279 (569)
Q Consensus 248 ----------------------------------------------~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~ 279 (569)
...|...|..+|.+.. ..+.++||||+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 1235556666665543 3458999999999999
Q ss_pred HHHHHHHHHCC----C--------CceeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccccCCCCCCCEEEEcCCCCC
Q 008345 280 EFLNVLFREEG----L--------EPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPK 346 (569)
Q Consensus 280 ~~l~~~L~~~~----~--------~~~~i~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s 346 (569)
+.++..|...+ + ....+||+|++.+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|++
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 99999999864 3 34455669999999999999999 99999999999999999999999999999999
Q ss_pred hhHHHHHhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 347 PKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 347 ~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
+..|+||+|| ||. +.|.++.|+++.+......+
T Consensus 483 ~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 483 VIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 9999999999 998 88999999999876554433
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-46 Score=424.46 Aligned_cols=343 Identities=20% Similarity=0.251 Sum_probs=228.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 35 ~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
..++..+||..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999998876543334679999999999999999999
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCChHH-HHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE-QLHKI 192 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~f~~-~l~~i 192 (569)
++....++++..++||.....++..+..+++|+|+||++|.+.+.. ..+ .+.++++|||||||++.+..... .+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~-~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT-TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc-CcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 9988889999999999876666666667899999999999999886 334 68899999999999998765322 22222
Q ss_pred HHh-----cCCCCcEEEEEecCC-------hH-HHHHHHh---------------------cCCCCeeeeeccccc----
Q 008345 193 LGQ-----LSENRQTLLFSATLP-------SA-LAEFAKA---------------------GLRDPHLVRLDVDTK---- 234 (569)
Q Consensus 193 ~~~-----~~~~~q~ll~SAT~~-------~~-~~~~~~~---------------------~l~~~~~i~~~~~~~---- 234 (569)
+.. .+...+++++|||+. .. +..+... +...|..........
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 322 245789999999996 11 1111111 111111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 008345 235 -------------------------------------------------------------------------------- 234 (569)
Q Consensus 235 -------------------------------------------------------------------------------- 234 (569)
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence
Q ss_pred ---------------------------cCCCceEEEEE-------------c---chhhHHHHHHHHHHHhc--CCCCcE
Q 008345 235 ---------------------------ISPDLKLAFFT-------------L---RQEEKHAALLYMIREHI--SSDQQT 269 (569)
Q Consensus 235 ---------------------------~~~~~~~~~~~-------------~---~~~~k~~~L~~ll~~~~--~~~~~~ 269 (569)
....+.+.+.. . ....|...|..++.... .++.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000000 0 12346667777777653 356799
Q ss_pred EEEEcChhhHHHHHHHHHHCC----CCceee--------cCCCCHHHHHHHHHHHhc-CCceEEEEeccccccCCCCCCC
Q 008345 270 LIFVSTKHHVEFLNVLFREEG----LEPSVC--------YGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 270 IIF~~t~~~~~~l~~~L~~~~----~~~~~i--------~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~ 336 (569)
||||+++..++.+++.|...+ +.+..+ ||+|++.+|..+++.|++ |+.+|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999987 788888 559999999999999998 9999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHH
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~ 380 (569)
+||+||+|.++..|+||+|| ||. +.|.++.+++..+......
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHH
Confidence 99999999999999999999 998 7899999999877654433
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-45 Score=417.00 Aligned_cols=338 Identities=22% Similarity=0.264 Sum_probs=266.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
+..+|++++|++++.+.+.+.||..|+|+|.++++. +.++++++++||||||||++|.+|+++.+... |.+++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEE
Confidence 456899999999999999999999999999999999 78899999999999999999999999887642 5689999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+|||++..++.. ....++++++||+||+|.
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhh
Confidence 9999999999998865543 48899999998654432 124799999999999998887 334488999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceE------------EEEEcc
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL------------AFFTLR 247 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~------------~~~~~~ 247 (569)
+.+.++...+..++..++ ..|++++|||+++. ..++... ..+ .+.... ... .+.. ......
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~-~~~~~~--r~~-~l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAE-PVATNW--RPV-PLIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCE-EEECCC--CSS-CEEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCC-ccCCCC--CCC-CceEEEEecCCcccceeeecCc
Confidence 998888888888888887 79999999999753 4444433 221 111110 000 1111 111111
Q ss_pred hh----hHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCC---------------------------------
Q 008345 248 QE----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG--------------------------------- 290 (569)
Q Consensus 248 ~~----~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~--------------------------------- 290 (569)
.. .........+.+.+..++++||||+++++++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 00 00122334444444578999999999999999999998642
Q ss_pred ---CCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cC-------CCCChhHHHHHhhc
Q 008345 291 ---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-------FPPKPKIFVHRVGR 356 (569)
Q Consensus 291 ---~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d-------~p~s~~~~~qrvGR 356 (569)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 24789999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred cccCCC--ccEEEEEecccc
Q 008345 357 AARAGR--TGTAFSFVTSED 374 (569)
Q Consensus 357 ~gR~g~--~G~~i~~v~~~e 374 (569)
+||.|. .|.|+.++++.+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCCCceEEEEeCCch
Confidence 999884 799999998765
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.1e-46 Score=422.87 Aligned_cols=335 Identities=21% Similarity=0.283 Sum_probs=270.6
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
+|+++||++.+.+.+.+.||..|+|+|.++++. ++.++++++.||||||||++|.+|+++.+... |.+++|++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~ 77 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPL 77 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcCc
Confidence 699999999999999999999999999999998 88899999999999999999999999888753 5689999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp GGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGC
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCC
Confidence 9999999998876654 48899999998665432 234799999999999988876 344588999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEE------Ecc-----hhhH
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF------TLR-----QEEK 251 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~------~~~-----~~~k 251 (569)
+++...+..++..++...|++++|||+++. .+++.. +..+ .+..+. . +..+...+. ... ....
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~~-~~~~~~--r-p~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNAE-LIVSDW--R-PVKLRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTEE-EEECCC--C-SSEEEEEEEETTEEEETTSCEEECSST
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCCc-ccCCCC--C-CCcceEEEEeCCeeeccccchhhhhHH
Confidence 888999999999888789999999999863 444443 3321 111110 0 011111111 111 1222
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC------------------C---------------CCceeecC
Q 008345 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------G---------------LEPSVCYG 298 (569)
Q Consensus 252 ~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~------------------~---------------~~~~~i~g 298 (569)
.. .+.+.+..++++||||+|+++++.++..|.+. + ..+..+||
T Consensus 227 ~~----~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 227 EE----LVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp TH----HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HH----HHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 23 33333346799999999999999999888753 1 24789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cC----CCCChhHHHHHhhccccCC--CccEEEE
Q 008345 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD----FPPKPKIFVHRVGRAARAG--RTGTAFS 368 (569)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d----~p~s~~~~~qrvGR~gR~g--~~G~~i~ 368 (569)
+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+.
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999999998 77 5889999999999999988 4799999
Q ss_pred EeccccHHH
Q 008345 369 FVTSEDMAY 377 (569)
Q Consensus 369 ~v~~~e~~~ 377 (569)
++++.+..+
T Consensus 383 l~~~~~~~~ 391 (720)
T 2zj8_A 383 VSTSDDPRE 391 (720)
T ss_dssp ECSSSCHHH
T ss_pred EecCccHHH
Confidence 999887443
No 27
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.7e-45 Score=402.59 Aligned_cols=324 Identities=19% Similarity=0.256 Sum_probs=263.5
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|.+|++..... |.+++||+||++||.|..+++..+.++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3699 79999999999999998 999999999999999999754432 567999999999999999999999999
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccC-C----------
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G---------- 182 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~-~---------- 182 (569)
+|+++++++||.+...... ..+++|+||||++| ++++... +.+.+..+.++|+||||+|+ +
T Consensus 179 lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp TTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 9999999999988654433 34699999999999 8888753 13667899999999999998 3
Q ss_pred -----CChHHHHHHHHHhcC---------CCCcEE-----------------EEEecCChHHHH---HH--HhcCC-C--
Q 008345 183 -----MGFAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSALAE---FA--KAGLR-D-- 223 (569)
Q Consensus 183 -----~~f~~~l~~i~~~~~---------~~~q~l-----------------l~SAT~~~~~~~---~~--~~~l~-~-- 223 (569)
++|...+..|+..++ +.+|++ |||||++..... .. +..+. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 358899999999998 678998 999998753222 22 11221 1
Q ss_pred -----Ceeeeecc-----------------------------ccccC---------------------------------
Q 008345 224 -----PHLVRLDV-----------------------------DTKIS--------------------------------- 236 (569)
Q Consensus 224 -----~~~i~~~~-----------------------------~~~~~--------------------------------- 236 (569)
+..+.++. ++...
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 11111110 00000
Q ss_pred -----------CCce---EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCH
Q 008345 237 -----------PDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (569)
Q Consensus 237 -----------~~~~---~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~ 302 (569)
+... ..++.+...+|..++...+......+.++||||+|+..++.++..|...|+++..+||++.+
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~ 496 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE 496 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 0000 11345566789999999887766678899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCC-----------------------------------------------
Q 008345 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----------------------------------------------- 335 (569)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v----------------------------------------------- 335 (569)
.++..+.+.|+.| .|+||||+|+||+||+..
T Consensus 497 rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 574 (922)
T 1nkt_A 497 QEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEV 574 (922)
T ss_dssp HHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 7887788888877 699999999999999975
Q ss_pred -----CEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccH
Q 008345 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (569)
Q Consensus 336 -----~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~ 375 (569)
.+||+++.|.+.+.|.||+||+||+|.+|.+++|++.+|.
T Consensus 575 ~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 575 IEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998764
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=430.68 Aligned_cols=331 Identities=17% Similarity=0.200 Sum_probs=264.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
..|..+++++.+...+...++-.|+|+|.++++.++.|++++++|+||||||++|++|++..+.. |.++||++||
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~Pt 236 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPI 236 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEESS
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcCc
Confidence 46777888888877777777777999999999999999999999999999999999999988743 6789999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
++|+.|+++.+..+.. .++.++|+.+ ...+++|+|+||++|.+++.. ....+.++++|||||||++.+
T Consensus 237 raLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccc
Confidence 9999999998888653 5777888876 345799999999999999987 345588999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEecCChH--HHHHHHhcCCCCeeeeeccccccCCCceEEEEEcch------------
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------------ 248 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~------------ 248 (569)
++|...+..++..++...|+++||||+|+. +..+.......|..+....... ..+...++....
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccc
Confidence 999999999999999999999999999875 4466666666655443332211 112222211100
Q ss_pred -------------------------------------------hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHH
Q 008345 249 -------------------------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285 (569)
Q Consensus 249 -------------------------------------------~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~ 285 (569)
..+...++..+... ...++||||+++..|+.++..
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHH
Confidence 11222233333322 456999999999999999988
Q ss_pred HHHCCCC---------------------------------------ceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 286 FREEGLE---------------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 286 L~~~~~~---------------------------------------~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
|...++. +..+||+|++..|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 7543221 6889999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEcCCC--------CChhHHHHHhhccccCC--CccEEEEEecccc
Q 008345 327 ARGIDIPLLDNVINWDFP--------PKPKIFVHRVGRAARAG--RTGTAFSFVTSED 374 (569)
Q Consensus 327 arGlDip~v~~VI~~d~p--------~s~~~~~qrvGR~gR~g--~~G~~i~~v~~~e 374 (569)
++|||+|++++||+++.| .++..|+||+||+||.| ..|.+++++.+..
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 999999999999988764 36667999999999999 5799999888763
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-45 Score=418.55 Aligned_cols=334 Identities=19% Similarity=0.240 Sum_probs=215.3
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.+|+..|+|+|.++++.++.|+++++.+|||||||++|++|++..+.......+.++|||+||++|+.|+.+.++.+...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 45899999999999999999999999999999999999999999988764444778999999999999999999999887
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCChHHHHH-HHHHhc-
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQL- 196 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~f~~~l~-~i~~~~- 196 (569)
.++++..++|+.....++..+..+++|+|+||++|.+++.. ..+ .+.++++|||||||++.+.+....+. ..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS-SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh-ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 89999999999987777777777899999999999999986 344 78899999999999999876443332 333221
Q ss_pred ---CCCCcEEEEEecCCh-----------HHHHHHHh------------------cCCCCeeeeeccccccCCC------
Q 008345 197 ---SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD------ 238 (569)
Q Consensus 197 ---~~~~q~ll~SAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~~~~~~------ 238 (569)
.+..|++++|||++. .+..+... ++..|..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 456899999999852 22222211 1111111110000000000
Q ss_pred ---------------------ceEEEEE-------c--------------------------------------------
Q 008345 239 ---------------------LKLAFFT-------L-------------------------------------------- 246 (569)
Q Consensus 239 ---------------------~~~~~~~-------~-------------------------------------------- 246 (569)
+....+. +
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcCh
Q 008345 247 ------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (569)
Q Consensus 247 ------------------------------------------------~~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~ 276 (569)
....|...|..+|.+.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 01224555666665533 4678999999999
Q ss_pred hhHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccccCCCCCCCEEEEcCC
Q 008345 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (569)
Q Consensus 277 ~~~~~l~~~L~~~------------~~~~~~i~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~~VI~~d~ 343 (569)
..++.+...|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 4556677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 344 p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
|+++..|+||+|| ||. +.|.++.|+++.+..
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 9999999999999 999 889999999987654
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.7e-46 Score=435.22 Aligned_cols=336 Identities=18% Similarity=0.228 Sum_probs=268.9
Q ss_pred CCCCCCCCHHHH-----HHHH-HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEE
Q 008345 24 GFESLNLSPNVF-----RAIK-RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (569)
Q Consensus 24 ~f~~l~l~~~~~-----~~l~-~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~L 97 (569)
.+...++++.+. +.+. .+||. | |+|.++||.++.|+|+++.||||||||+ |.+|++..+.. .+.++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~l 103 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCY 103 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEE
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEE
Confidence 455555554433 4443 47999 9 9999999999999999999999999998 99999988765 367899
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCC----eEEEEEcCCCHHHH---HHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCee
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDL----RISLLVGGDSMESQ---FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l----~~~~~~gg~~~~~~---~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~ 170 (569)
||+||++|+.|+++.++.++...++ ++..++||.+...+ ...+.. ++|+|+||++|.+++.+ +++++
T Consensus 104 il~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~ 177 (1054)
T 1gku_B 104 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFD 177 (1054)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCS
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCC
Confidence 9999999999999999999988888 89999999988764 344445 99999999999988764 66899
Q ss_pred EEEEeCCCccCCCChHHHHHHHHHhc-----------CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCc
Q 008345 171 YVVFDEADCLFGMGFAEQLHKILGQL-----------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (569)
Q Consensus 171 ~iViDEah~l~~~~f~~~l~~i~~~~-----------~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 239 (569)
+|||||||+++++ ...+..++..+ +..+|+++||||++.. ..++..++.++..+.+.........+
T Consensus 178 ~lViDEah~~l~~--~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i 254 (1054)
T 1gku_B 178 FIFVDDVDAILKA--SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNV 254 (1054)
T ss_dssp EEEESCHHHHHTS--THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCE
T ss_pred EEEEeChhhhhhc--cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCc
Confidence 9999999999984 56777777666 4578999999999886 43333333334444444444444556
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 008345 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (569)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~I 319 (569)
.+.+. ...+...|..++... +.++||||+|+..++.++..|... +.+..+||++. .+++.|++|+.+|
T Consensus 255 ~~~~~---~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~V 322 (1054)
T 1gku_B 255 EDVAV---NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDH 322 (1054)
T ss_dssp EEEEE---SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSE
T ss_pred eEEEe---chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcE
Confidence 65555 344555666666543 578999999999999999999988 99999999984 6788999999999
Q ss_pred EEE----eccccccCCCCCC-CEEEEcCCC--------------------------------------------------
Q 008345 320 LIV----TDVAARGIDIPLL-DNVINWDFP-------------------------------------------------- 344 (569)
Q Consensus 320 LV~----Tdv~arGlDip~v-~~VI~~d~p-------------------------------------------------- 344 (569)
||| |+++++|+|+|+| ++||++|+|
T Consensus 323 LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402 (1054)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHH
T ss_pred EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999995 999999999
Q ss_pred ---------------------CChhHHHHHhhccccCCCcc--EEEEEeccccHHHHHHHHHHhCC
Q 008345 345 ---------------------PKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLSK 387 (569)
Q Consensus 345 ---------------------~s~~~~~qrvGR~gR~g~~G--~~i~~v~~~e~~~~~~l~~~l~~ 387 (569)
.+..+|+||+||+||.|..| .+++++..+|...+..++..++.
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 403 VMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48899998888888888877764
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.7e-45 Score=416.63 Aligned_cols=337 Identities=21% Similarity=0.266 Sum_probs=263.4
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 24 GFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 24 ~f~~l~--l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
+|++|+ |++.+.+.+.+.||..|+|+|.++++.+++++++++.||||||||++|.+|+++.+.. +.+++|++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P 76 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVP 76 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEES
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeC
Confidence 688999 9999999999999999999999999999999999999999999999999999988763 467999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+|||++..++.. ....++++++||+||+|.+.
T Consensus 77 ~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 77 LRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp SHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecC
Confidence 99999999998865543 48899999998654332 124799999999999998876 33447899999999999999
Q ss_pred CCChHHHHHHHHHhc---CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEE------Ecchhh--
Q 008345 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF------TLRQEE-- 250 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~---~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~-- 250 (569)
++++...+..++..+ ++..|++++|||+++ ..+++.. +..+ .+..+.. . ..+...+. ......
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~-~~~~~~r--~-~~l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDAD-YYVSDWR--P-VPLVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCE-EEECCCC--S-SCEEEEEECSSEEEEEETTEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCC-cccCCCC--C-ccceEEEeeCCeeeccCcchhh
Confidence 988877777776655 578999999999986 3555553 3322 2211111 1 11111111 111100
Q ss_pred -HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC------------------------------CCCceeecCC
Q 008345 251 -KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------GLEPSVCYGD 299 (569)
Q Consensus 251 -k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~------------------------------~~~~~~i~g~ 299 (569)
+.......+.+....++++||||+++++++.++..|... +..+..+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 226 SRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp EEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred hhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 000022233333346789999999999999999888642 1357889999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cC---CCCChhHHHHHhhccccCC--CccEEEEEe
Q 008345 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FPPKPKIFVHRVGRAARAG--RTGTAFSFV 370 (569)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d---~p~s~~~~~qrvGR~gR~g--~~G~~i~~v 370 (569)
|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+.++
T Consensus 306 l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~ 385 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385 (702)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999998 66 6889999999999999998 479999999
Q ss_pred ccccHH
Q 008345 371 TSEDMA 376 (569)
Q Consensus 371 ~~~e~~ 376 (569)
++.+..
T Consensus 386 ~~~~~~ 391 (702)
T 2p6r_A 386 GKRDRE 391 (702)
T ss_dssp CGGGHH
T ss_pred cCccHH
Confidence 988744
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-43 Score=377.05 Aligned_cols=324 Identities=21% Similarity=0.279 Sum_probs=255.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeE
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (569)
.|+|+|.++++.++.+ ++++.++||+|||++++.+++..+.. .+.++||++|+++|+.|+.+.+.++....+.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5999999999999999 99999999999999999999988762 356799999999999999999998865455689
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
..++|+........ ...+++|+|+||+++.+.+.. ..+.+.++++||+||||++.+......+...+.......++++
T Consensus 84 ~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 84 VALTGEKSPEERSK-AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred EEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 99999888765433 334689999999999998875 4567889999999999999977666666677777777899999
Q ss_pred EEecCChH---HHHHHHhcCCCCeeeeecccccc---CCCceEEEEEc--------------------------------
Q 008345 205 FSATLPSA---LAEFAKAGLRDPHLVRLDVDTKI---SPDLKLAFFTL-------------------------------- 246 (569)
Q Consensus 205 ~SAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~---~~~~~~~~~~~-------------------------------- 246 (569)
+|||++.. +..+..........+........ .......+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999743 33333322111111100000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 008345 247 -------------------------------------------------------------------------------- 246 (569)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (569)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecC--------
Q 008345 247 ------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG-------- 298 (569)
Q Consensus 247 ------------------~~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g-------- 298 (569)
....|...+..++.+.. ..+.++||||+++..++.+.+.|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 12235566667776654 46889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+ |.++.++++++..
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999987654
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1e-43 Score=412.09 Aligned_cols=335 Identities=19% Similarity=0.226 Sum_probs=214.2
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
-.|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+++.++.+...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 45788999999999999999999999999999999999999998887654333678999999999999999999999887
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHH-HHHHh---
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ--- 195 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~-~i~~~--- 195 (569)
.++++..++|+.....+...+..+++|+|+||++|.+++.......+.++++||+||||++...+....+. .++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 89999999999877666666666799999999999999986332268899999999999999876433332 33332
Q ss_pred -cCCCCcEEEEEecCCh-----------HHHHHHHh------------------cCCCCeeeeeccccccCCC-------
Q 008345 196 -LSENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD------- 238 (569)
Q Consensus 196 -~~~~~q~ll~SAT~~~-----------~~~~~~~~------------------~l~~~~~i~~~~~~~~~~~------- 238 (569)
..+..|++++|||++. .+..+... +...|..............
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 1456899999999852 12111111 1111211111000000000
Q ss_pred --------------------ceEEEEEc----------------------------------------------------
Q 008345 239 --------------------LKLAFFTL---------------------------------------------------- 246 (569)
Q Consensus 239 --------------------~~~~~~~~---------------------------------------------------- 246 (569)
+....+..
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 00000000
Q ss_pred -----------------------------------------------chhhHHHHHHHHHHHhc--CCCCcEEEEEcChh
Q 008345 247 -----------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKH 277 (569)
Q Consensus 247 -----------------------------------------------~~~~k~~~L~~ll~~~~--~~~~~~IIF~~t~~ 277 (569)
....|...|..+|.+.. ..+.++||||+++.
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 01224445555666543 45789999999999
Q ss_pred hHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEEeccccccCCCCCCCEEEEcCCC
Q 008345 278 HVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (569)
Q Consensus 278 ~~~~l~~~L~~~------------~~~~~~i~g~l~~~~R~~~l~~F~~-g~~~ILV~Tdv~arGlDip~v~~VI~~d~p 344 (569)
.++.+...|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 999999999986 4555566888999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 345 ~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
+++..|+||+|| ||. +.|.++.+++..+..
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999 999 789999999886554
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-42 Score=403.00 Aligned_cols=322 Identities=18% Similarity=0.239 Sum_probs=256.6
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 38 l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
....||. |+|+|.++++.++.|+++++.||||||||++|.+|++..+. .|.++||++||++|+.|+++.+..+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----NKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----TTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----cCCeEEEECChHHHHHHHHHHHHHHh
Confidence 4456887 99999999999999999999999999999999999988774 36789999999999999999888865
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
. .+..++|+.+.. .+++|+|+||++|.+++.+ ....+.++++|||||||++.++++...+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 3 677788876532 4689999999999998876 456688999999999999999998999999999999
Q ss_pred CCCcEEEEEecCChHHH--HHHHhcCCCCeeeeeccccccCCCceEEEEEcc---------h------------------
Q 008345 198 ENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------Q------------------ 248 (569)
Q Consensus 198 ~~~q~ll~SAT~~~~~~--~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~---------~------------------ 248 (569)
...|++++|||+|+... .+.......+..+...... +..+.+.++... .
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 99999999999987532 4443333444433332211 112322222110 0
Q ss_pred ----------------------------hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCC--------
Q 008345 249 ----------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-------- 292 (569)
Q Consensus 249 ----------------------------~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~-------- 292 (569)
......++..+... ...++||||+|+..|+.++..|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11122233333322 3458999999999999999988765442
Q ss_pred -------------------------------ceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE-
Q 008345 293 -------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN- 340 (569)
Q Consensus 293 -------------------------------~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~- 340 (569)
+..+||+|++..|..+++.|++|.++|||||+++++|+|+|++++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 577999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCChhHHHHHhhccccCCC--ccEEEEEeccc-cHHHHHHH
Q 008345 341 ---WDF----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE-DMAYLLDL 381 (569)
Q Consensus 341 ---~d~----p~s~~~~~qrvGR~gR~g~--~G~~i~~v~~~-e~~~~~~l 381 (569)
||. |.++..|+||+||+||.|. .|.+++++++. +...+..+
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 998 8899999999999999997 49999999876 54455443
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-43 Score=396.49 Aligned_cols=324 Identities=19% Similarity=0.216 Sum_probs=250.9
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 31 ~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g------~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
.+.+-+.+...|| .|||+|.++++.++.+ .+++++|+||||||++|++|++..+.. |.+++|++||++
T Consensus 355 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~ 428 (780)
T 1gm5_A 355 GKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSI 428 (780)
T ss_dssp THHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHH
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHH
Confidence 3445555678999 7999999999999875 589999999999999999999988754 578999999999
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH---HHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 105 La~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||.|+++.+.++....++++..++|+.+..... ..+. +.++|+|+||+.+.+ .+.+.++++||+||+|++
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchh
Confidence 999999999998888899999999999876543 3333 369999999997753 366889999999999995
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~ 260 (569)
. +.. ...+......+++++||||+++....... ..+.....++........+.. .+....+...+...+.
T Consensus 503 g---~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~---~~~~~~~~~~l~~~i~ 572 (780)
T 1gm5_A 503 G---VKQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQT---MLVPMDRVNEVYEFVR 572 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEE---CCCCSSTHHHHHHHHH
T ss_pred h---HHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEE---EEeccchHHHHHHHHH
Confidence 3 221 22233334578999999998765444333 333322222211111112221 1222334556777777
Q ss_pred HhcCCCCcEEEEEcCh--------hhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 008345 261 EHISSDQQTLIFVSTK--------HHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (569)
Q Consensus 261 ~~~~~~~~~IIF~~t~--------~~~~~l~~~L~~---~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arG 329 (569)
+....+.+++|||++. ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|
T Consensus 573 ~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~G 652 (780)
T 1gm5_A 573 QEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVG 652 (780)
T ss_dssp HHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSC
T ss_pred HHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCcc
Confidence 7777889999999965 446778888877 47889999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC-ChhHHHHHhhccccCCCccEEEEEeccccHH
Q 008345 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (569)
Q Consensus 330 lDip~v~~VI~~d~p~-s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~ 376 (569)
+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+.+..
T Consensus 653 IDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 653 IDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp SCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred ccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 9999999999999985 6788999999999999999999999854433
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=9.9e-41 Score=392.49 Aligned_cols=325 Identities=18% Similarity=0.197 Sum_probs=262.8
Q ss_pred CCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 27 SLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILS----GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 27 ~l~l~~~~~~~l~-~~g~~~~t~iQ~~~i~~il~----g~--dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
.++++....+.+. ..||. |||+|.++++.++. ++ |++++|+||||||++|+.+++..+. .|.+++|+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----~g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----hCCeEEEE
Confidence 4567888888774 56997 79999999999987 65 9999999999999999999887654 36789999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH---HHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
+||++|+.|+++.+.+.....++++..++|..+..... ..+. +.++|+|+||+.+. ..+.+.++++||+|
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 99999999999999887767788999998877665543 3333 36999999998663 35678999999999
Q ss_pred CCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHH
Q 008345 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (569)
Q Consensus 176 Eah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (569)
|||++ ......++..++...+++++|||+++.....+..++.++..+...... ...+...+...... .+
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~--r~~i~~~~~~~~~~----~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSM----VV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--CBCEEEEEEECCHH----HH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--ccccEEEEecCCHH----HH
Confidence 99993 344566777777889999999999887777777777666544332211 11233333332222 22
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip 333 (569)
...+...+..+++++|||+++.+++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3333333456899999999999999999999887 78899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-CCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 334 LLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 334 ~v~~VI~~d~-p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
++++||+++. +.+...|.||+||+||.|+.|.||+++.+++
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999988 5688999999999999999999999987753
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.5e-43 Score=396.27 Aligned_cols=324 Identities=21% Similarity=0.241 Sum_probs=227.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC-CCCeEEEEEcCcHHHHHHH-HHHHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQT-LKFTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~-~~g~~~Lil~PtreLa~Q~-~~~~~~~~~~~~l 122 (569)
.|+|+|.++++.++.|+++++.+|||||||++|++|+++.+..... ..+.++|||+|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 4999999999999999999999999999999999999988765421 2236799999999999999 9999988754 58
Q ss_pred eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh-----cCCCCCCCeeEEEEeCCCccCCCChHHH-HHHHHHh-
Q 008345 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQ- 195 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~-----~~~~~l~~l~~iViDEah~l~~~~f~~~-l~~i~~~- 195 (569)
++..++|+......+..+..+++|+|+||++|.+.+.. ...+.+.++++|||||||++...++... +...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999999877666666667899999999999988842 2346788999999999999876442222 2222221
Q ss_pred ---c---------CCCCcEEEEEecCChH-----------HHHHHHhcCCCCeeeeeccc----cccCCCceEEEEEcc-
Q 008345 196 ---L---------SENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLR- 247 (569)
Q Consensus 196 ---~---------~~~~q~ll~SAT~~~~-----------~~~~~~~~l~~~~~i~~~~~----~~~~~~~~~~~~~~~- 247 (569)
. .+..+++++|||++.. +..+.... ....+...... ..........+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANL-DAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHH-TCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhc-CCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 1 1567999999999862 22222111 11000000000 000000011111100
Q ss_pred --------------------------------------------------------------------------------
Q 008345 248 -------------------------------------------------------------------------------- 247 (569)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (569)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------hhhHHHHHHHHHHHhcC--C-CCcEE
Q 008345 248 ------------------------------------------------------QEEKHAALLYMIREHIS--S-DQQTL 270 (569)
Q Consensus 248 ------------------------------------------------------~~~k~~~L~~ll~~~~~--~-~~~~I 270 (569)
...|...|..+|..... . +.++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00111222333333221 2 78999
Q ss_pred EEEcChhhHHHHHHHHHHC------CCCceeecCC--------CCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCC
Q 008345 271 IFVSTKHHVEFLNVLFREE------GLEPSVCYGD--------MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (569)
Q Consensus 271 IF~~t~~~~~~l~~~L~~~------~~~~~~i~g~--------l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~ 336 (569)
|||+++..++.+++.|... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc
Q 008345 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 337 ~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
+||+||+|+++..|+||+||+||. |.+++++.+.
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999996554 4555555553
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.2e-44 Score=395.00 Aligned_cols=317 Identities=15% Similarity=0.178 Sum_probs=241.9
Q ss_pred CCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 25 FES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 25 f~~-l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
|.. +++++.++++|... +..++|+|+.++|.++.|+|+++.|+||||||++|++|+++.+.. .+.++||++|||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Ptr 225 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPTR 225 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSH
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcChH
Confidence 444 67888888777654 588999999899999999999999999999999999999998876 367899999999
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCC
Q 008345 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (569)
Q Consensus 104 eLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~ 183 (569)
+||.|+++.++ +..+. +.++. .. .....+..+.++|.+.+.+.+.. ...+.++++|||||||++ ++
T Consensus 226 eLa~Qi~~~l~------~~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 226 VVAAEMEEALR------GLPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHTT------TSCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHhc------CCcee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-Cc
Confidence 99999887765 23333 22211 10 01123456778888888877665 356899999999999998 77
Q ss_pred ChHHHHHHHHHhcC-CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHh
Q 008345 184 GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (569)
Q Consensus 184 ~f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~ 262 (569)
+|...+..++..++ ..+|+++||||+|..+..++. .++..+.+..... ..+...++..+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~--------------~~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIP--------------ERSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCC--------------SSCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCC--------------HHHHHHHHHHHHh-
Confidence 78888888887775 689999999999876443322 2344444332210 0111123333433
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEE----
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV---- 338 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~V---- 338 (569)
.+.++||||+|+++++.+++.|...++.+..+||. +|..+++.|++|+.+||||||++++|+|+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999984 677899999999999999999999999998 8888
Q ss_pred ----------------EEcCCCCChhHHHHHhhccccCCC-ccEEEEEec---cccHHHHHHHHHHh
Q 008345 339 ----------------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVT---SEDMAYLLDLHLFL 385 (569)
Q Consensus 339 ----------------I~~d~p~s~~~~~qrvGR~gR~g~-~G~~i~~v~---~~e~~~~~~l~~~l 385 (569)
|+|+.|.+..+|+||+||+||+|. +|.+++|++ ++|...+..++..+
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 778889999999999999999965 899999998 77777777776654
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3.6e-41 Score=390.79 Aligned_cols=319 Identities=20% Similarity=0.254 Sum_probs=246.6
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
..+|. |+|+|.++|+.++.|+|+++.||||||||++|++|+...+. .+.++||++|+++|+.|+++.++.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 45777 99999999999999999999999999999999999887654 36789999999999999999888753
Q ss_pred CCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCC
Q 008345 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (569)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~ 199 (569)
.++.+..++|+.+. ...++|+|+||++|.+++.. ....+.++++|||||||++.++++...+..++..++..
T Consensus 107 ~~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 36888999998753 34689999999999998876 34568899999999999999999999999999999999
Q ss_pred CcEEEEEecCChHHHHHHHhc---CCCCeeeeeccccccCCCceEEE---------------------------------
Q 008345 200 RQTLLFSATLPSALAEFAKAG---LRDPHLVRLDVDTKISPDLKLAF--------------------------------- 243 (569)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~---l~~~~~i~~~~~~~~~~~~~~~~--------------------------------- 243 (569)
.|++++|||+|+.. +++... ...+..+.. .... +..+.+.+
T Consensus 179 v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~-~~~r-~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 179 VKFILLSATVPNTY-EFANWIGRTKQKNIYVIS-TPKR-PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEE-CSSC-SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred CCEEEEcCCCCChH-HHHHHHhcccCCceEEEe-cCCC-CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 99999999998653 333322 111111111 0000 01111111
Q ss_pred ------------------------------------------------------------EEcchhhHHHHHHHHHHHhc
Q 008345 244 ------------------------------------------------------------FTLRQEEKHAALLYMIREHI 263 (569)
Q Consensus 244 ------------------------------------------------------------~~~~~~~k~~~L~~ll~~~~ 263 (569)
.......+...++..+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~- 334 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR- 334 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-
Confidence 0111223455666666554
Q ss_pred CCCCcEEEEEcChhhHHHHHHHHHHCCC---------------------------------------CceeecCCCCHHH
Q 008345 264 SSDQQTLIFVSTKHHVEFLNVLFREEGL---------------------------------------EPSVCYGDMDQDA 304 (569)
Q Consensus 264 ~~~~~~IIF~~t~~~~~~l~~~L~~~~~---------------------------------------~~~~i~g~l~~~~ 304 (569)
...++||||+|+..|+.++..|...++ .+..+||+|++..
T Consensus 335 -~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~ 413 (997)
T 4a4z_A 335 -ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIV 413 (997)
T ss_dssp -TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred -CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHH
Confidence 457999999999999999999977655 4689999999999
Q ss_pred HHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCC---------ChhHHHHHhhccccCC--CccEEEEEecc-
Q 008345 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------KPKIFVHRVGRAARAG--RTGTAFSFVTS- 372 (569)
Q Consensus 305 R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~---------s~~~~~qrvGR~gR~g--~~G~~i~~v~~- 372 (569)
|..+++.|++|.++|||||+++++|+|+|+ ..||.++.|. ++..|+||+||+||.| ..|.++.++..
T Consensus 414 R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~ 492 (997)
T 4a4z_A 414 KELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNS 492 (997)
T ss_dssp HHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSS
T ss_pred HHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCC
Confidence 999999999999999999999999999999 5555555544 9999999999999998 45888887742
Q ss_pred -ccHHHHHH
Q 008345 373 -EDMAYLLD 380 (569)
Q Consensus 373 -~e~~~~~~ 380 (569)
.+...+..
T Consensus 493 ~~~~~~~~~ 501 (997)
T 4a4z_A 493 PLSIATFKE 501 (997)
T ss_dssp CCCHHHHHH
T ss_pred cchHHHHHH
Confidence 34444443
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3.6e-40 Score=398.21 Aligned_cols=348 Identities=17% Similarity=0.226 Sum_probs=262.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
|....++++...+|..++|+|.++++.++. +++++++||||||||++|.+|+++.+... ++.++||++|+++||.|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 456788889889999999999999999976 57799999999999999999999998764 35679999999999999
Q ss_pred HHHHHH-HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC-CCCCCeeEEEEeCCCccCCCChH
Q 008345 109 TLKFTK-ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFA 186 (569)
Q Consensus 109 ~~~~~~-~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~-~~l~~l~~iViDEah~l~~~~f~ 186 (569)
+++.++ .|+...++++..++|+...+.. ...+++|+|+|||++..++.+... ..+.++++||+||+|.+.+.. .
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~r-g 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGEN-G 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTT-H
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCC-C
Confidence 998765 5788889999999997654432 234689999999999777765322 236789999999999988753 4
Q ss_pred HHHHHH-------HHhcCCCCcEEEEEecCChHHHHHHHhc-CCCCeeeeeccccccCCCceEEEEEcchhh---HH---
Q 008345 187 EQLHKI-------LGQLSENRQTLLFSATLPSALAEFAKAG-LRDPHLVRLDVDTKISPDLKLAFFTLRQEE---KH--- 252 (569)
Q Consensus 187 ~~l~~i-------~~~~~~~~q~ll~SAT~~~~~~~~~~~~-l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---k~--- 252 (569)
..+..+ ....+.+.|++++|||+++. .+++... ......+.+..+.. +..+...+....... +.
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~R-PvpL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVR-PVPLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGC-SSCEEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCC-CCCeEEEEEeccCCCchhhhhhh
Confidence 433333 34457789999999999864 4444433 22333333333322 223444433332211 11
Q ss_pred -HHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC----------------------------------CCCceeec
Q 008345 253 -AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------------------GLEPSVCY 297 (569)
Q Consensus 253 -~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~----------------------------------~~~~~~i~ 297 (569)
..+...+.. ...+.++||||+|+..|+.++..|... ...+.++|
T Consensus 1142 ~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 222333333 346789999999999999887665321 12467899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----c------CCCCChhHHHHHhhccccCCC--ccE
Q 008345 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----W------DFPPKPKIFVHRVGRAARAGR--TGT 365 (569)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~------d~p~s~~~~~qrvGR~gR~g~--~G~ 365 (569)
|+|++.+|..+++.|++|.++|||||+++++|+|+|..++||. | ..|.++.+|+||+|||||+|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999999983 2 236789999999999999997 599
Q ss_pred EEEEeccccHHHHHHHHHHhCCCcc
Q 008345 366 AFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 366 ~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
|++++.+.+..++.. ++..++.
T Consensus 1301 avll~~~~~~~~~~~---ll~~~~p 1322 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK---FLYEPLP 1322 (1724)
T ss_dssp EEEEEEGGGHHHHHH---HTTSCBC
T ss_pred EEEEecchHHHHHHH---HhCCCCc
Confidence 999999888776654 4555443
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.8e-42 Score=368.36 Aligned_cols=287 Identities=16% Similarity=0.189 Sum_probs=219.5
Q ss_pred CCCCChHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 42 GYKVPTPIQRKTMPLILSGADV-VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dv-l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
|+.+|+|+|. +||.++.++++ ++.||||||||++|++|++..+.. .+.++||++|||+|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 8899999986 79999999887 899999999999999999987765 36789999999999999988764
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHH-hcCCC
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG-QLSEN 199 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~-~~~~~ 199 (569)
++.+....+.... ....+..|.++|++.+.+.+.. ...+.++++|||||||++ +.++...+..+.. ..+++
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 3333322222111 1134567999999999988875 356889999999999987 4333333322322 23557
Q ss_pred CcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhH
Q 008345 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (569)
Q Consensus 200 ~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~ 279 (569)
+|+++||||+|.....+ ...++..+...... +.. .+ ..+...+.+ ..+++||||+|++++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~--p~~---~~---------~~~~~~l~~---~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREI--PER---SW---------NTGFDWITD---YQGKTVWFVPSIKAG 201 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCC--CSS---CC---------SSSCHHHHH---CCSCEEEECSSHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccC--Cch---hh---------HHHHHHHHh---CCCCEEEEcCCHHHH
Confidence 99999999998754322 23344444332111 100 00 112233333 356999999999999
Q ss_pred HHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcC-----------------
Q 008345 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----------------- 342 (569)
Q Consensus 280 ~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d----------------- 342 (569)
+.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|+|+|+ ++|||||
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~ 276 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVIL 276 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeee
Confidence 9999999999999999999764 46789999999999999999999999999 9999999
Q ss_pred ---CCCChhHHHHHhhccccCCC-ccEEEEEecc
Q 008345 343 ---FPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (569)
Q Consensus 343 ---~p~s~~~~~qrvGR~gR~g~-~G~~i~~v~~ 372 (569)
.|.+...|+||+||+||.|+ .|.+++|...
T Consensus 277 ~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 277 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.1e-41 Score=369.44 Aligned_cols=313 Identities=15% Similarity=0.176 Sum_probs=241.8
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCe
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~ 123 (569)
..|+|+|.++++.++.+++++++++||||||++|+.|+...+... +.++|||+||++|+.|+++.+++++...+..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 369999999999999999999999999999999999998877542 3489999999999999999999997777788
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEE
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
+..++|+.+...+ +..+++|+|+||+++... ....+.++++||+||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 9999998776554 457899999999987643 224577899999999999775 55777788888889999
Q ss_pred EEEecCChHHHHHH-HhcCCCCeeeeeccccc-----cCC-CceEEEEEcch---------------------hhHHHHH
Q 008345 204 LFSATLPSALAEFA-KAGLRDPHLVRLDVDTK-----ISP-DLKLAFFTLRQ---------------------EEKHAAL 255 (569)
Q Consensus 204 l~SAT~~~~~~~~~-~~~l~~~~~i~~~~~~~-----~~~-~~~~~~~~~~~---------------------~~k~~~L 255 (569)
++|||+++...... ...+.++..+.+..... ..+ .+.......+. ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 99999976532211 11122333333322111 000 11111111111 1233445
Q ss_pred HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-ccccccCCCCC
Q 008345 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPL 334 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T-dv~arGlDip~ 334 (569)
..++......+.+.+|++.+..+++.+++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|+|+
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 56665554445555454445888999999999998899999999999999999999999999999999 99999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEec
Q 008345 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (569)
Q Consensus 335 v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~ 371 (569)
+++||+++.|.++..|.||+||+||.|+.|.++.+++
T Consensus 417 v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 417 LHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999998875555554
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.6e-40 Score=376.55 Aligned_cols=336 Identities=18% Similarity=0.249 Sum_probs=251.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
...+|+++++++.+.+.+..+| ..|+++|+++|+.++. ++++++.||||||||+ ++|++..........|.+++|+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 4568999999999999999988 7799999999988776 5679999999999999 5666622221111126789999
Q ss_pred cCcHHHHHHHHHHHHH-hcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 100 SPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~-~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
+|+|+|+.|+.+.+.. ++...+..+..-..... ....+.+|+++|||++.+.+.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 9999999999875543 33223333332211111 1124689999999999988875 3568999999999999
Q ss_pred c-cCCCChH-HHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHH
Q 008345 179 C-LFGMGFA-EQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (569)
Q Consensus 179 ~-l~~~~f~-~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (569)
. .++..+. ..+..+... .+..|++++|||++.. .+.. ++.++..+.+.... ..+.+.|......+.....+
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHHH-HhcCCCcccccCcc---cceEEEEecCCchhHHHHHH
Confidence 5 5553332 233344333 3578999999999643 4443 44545455443322 23455554444444444444
Q ss_pred HHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHH-----------CCCCceeecCCCCHHHHHHHHHHHh-----cCCce
Q 008345 257 YMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE-----------EGLEPSVCYGDMDQDARKIHVSRFR-----ARKTM 318 (569)
Q Consensus 257 ~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~-----------~~~~~~~i~g~l~~~~R~~~l~~F~-----~g~~~ 318 (569)
..+.... ..++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 3333221 2578999999999999999999975 5778999999999999999999999 99999
Q ss_pred EEEEeccccccCCCCCCCEEEEcCC------------------CCChhHHHHHhhccccCCCccEEEEEeccccH
Q 008345 319 FLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (569)
Q Consensus 319 ILV~Tdv~arGlDip~v~~VI~~d~------------------p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~ 375 (569)
|||||+++++|||+|++++||++++ |.+...|+||+||+||. ++|.||.|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 88999999999999999 78999999987654
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-39 Score=393.01 Aligned_cols=334 Identities=19% Similarity=0.286 Sum_probs=250.7
Q ss_pred CCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHhhhcCC------CCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 42 GYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~-g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~------~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
||+.++|+|.+++|.++. +++++++||||||||++|.+|++..+..+.. ..+.++||++|+++|+.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999875 7899999999999999999999999976432 246789999999999999999888
Q ss_pred HhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC-CCCCCeeEEEEeCCCccCCCChHHHHHHHH
Q 008345 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (569)
Q Consensus 115 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~-~~l~~l~~iViDEah~l~~~~f~~~l~~i~ 193 (569)
+.....|+++..++|+...... ...+++|+|+||+++..++..... ..++++++|||||+|.+.+ .....+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8767789999999998765432 134699999999998655543211 1268899999999998766 3444444333
Q ss_pred -------HhcCCCCcEEEEEecCChHHHHHHHhcCCCCe--eeeeccccccCCCceEEEEEcchh---hHHHHHHHHHHH
Q 008345 194 -------GQLSENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLRQE---EKHAALLYMIRE 261 (569)
Q Consensus 194 -------~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~--~i~~~~~~~~~~~~~~~~~~~~~~---~k~~~L~~ll~~ 261 (569)
...+...|++++|||+|+ ..+++...-.++. ...++.+. .+..+.+.++.+... .....+...+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~-RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSF-RPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGG-CSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCC-ccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 345778999999999986 3555554322221 12222222 222345544443322 122222222222
Q ss_pred ---hcCCCCcEEEEEcChhhHHHHHHHHHHC-------------------------------------CCCceeecCCCC
Q 008345 262 ---HISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGDMD 301 (569)
Q Consensus 262 ---~~~~~~~~IIF~~t~~~~~~l~~~L~~~-------------------------------------~~~~~~i~g~l~ 301 (569)
....++++||||+|++.|+.++..|.+. ...++++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 1234679999999999998888777531 123678999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----cC------CCCChhHHHHHhhccccCCC--ccEEEEE
Q 008345 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGTAFSF 369 (569)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~----~d------~p~s~~~~~qrvGR~gR~g~--~G~~i~~ 369 (569)
+.+|..+.+.|++|.++|||||+++|+|+|+|..++||. |+ .|.++.+|.||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999984 43 35689999999999999875 5999999
Q ss_pred eccccHHHHHHH
Q 008345 370 VTSEDMAYLLDL 381 (569)
Q Consensus 370 v~~~e~~~~~~l 381 (569)
..+++..++..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 999887766553
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6.2e-40 Score=354.34 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=226.9
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCe-
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~- 123 (569)
.|+|+|.++++.++.++++++.++||||||++|+.++... +.++|||+|+++|+.|+.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999999999999999999999999888754 457999999999999988877774 577
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEE
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
+..++|+.. ..++|+|+||+++...+... ..++++||+||||++.+.+|.. ++..+ ...+++
T Consensus 161 v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEE
T ss_pred eEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEE
Confidence 888877764 35899999999998777542 2468999999999999888764 44444 467899
Q ss_pred EEEecCCh-------------------HHHHHHHhcCCCCeeeeeccccc--------------------------cCCC
Q 008345 204 LFSATLPS-------------------ALAEFAKAGLRDPHLVRLDVDTK--------------------------ISPD 238 (569)
Q Consensus 204 l~SAT~~~-------------------~~~~~~~~~l~~~~~i~~~~~~~--------------------------~~~~ 238 (569)
++|||++. ...++...++.++..+.+..+.. ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999972 23333333333333222211100 0000
Q ss_pred ceEE---------------------EEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeec
Q 008345 239 LKLA---------------------FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (569)
Q Consensus 239 ~~~~---------------------~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~ 297 (569)
+... .+.+....|...+..++... .+.++||||++...++.++..|. +..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0000 00122345667777778763 57899999999999999998873 66899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCc---cEEEEEecccc
Q 008345 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT---GTAFSFVTSED 374 (569)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~---G~~i~~v~~~e 374 (569)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.++..|+||+||+||.|+. ..+|.+++.+.
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 35566776543
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.8e-40 Score=364.65 Aligned_cols=279 Identities=19% Similarity=0.283 Sum_probs=216.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeE
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (569)
.++++|..+++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+.. +..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 3556666666666678999999999999999999998762 5679999999999999988665432 4556
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCc--E
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ--T 202 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q--~ 202 (569)
...+|+.. ...+++|+|+|||+|+ . ...+.++++++||||||| +++++|...+..++..++..+| +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 67777754 3568999999999984 2 246778899999999995 5677888889999999988777 6
Q ss_pred EEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHH
Q 008345 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282 (569)
Q Consensus 203 ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l 282 (569)
+++|||+|..+. ...+....+.... ...+ .+. ..... +. ...++++||||+|++.++.+
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~~--~~~i--~~~--~~~~~-------l~--~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALSN--TGEI--PFY--GKAIP-------IE--AIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECBS--CSSE--EET--TEEEC-------GG--GSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeecc--cchh--HHH--Hhhhh-------hh--hccCCcEEEEeCCHHHHHHH
Confidence 778999987421 1222222221111 1111 110 00000 11 12578999999999999999
Q ss_pred HHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE----------EcC----------
Q 008345 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----------NWD---------- 342 (569)
Q Consensus 283 ~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI----------~~d---------- 342 (569)
++.|...++.+..+||+|++.+ |.++..+||||||++++|||+| +++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 4567779999999999999998 99988 788
Q ss_pred -CCCChhHHHHHhhccccCCCccEEEEEeccccHHH
Q 008345 343 -FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (569)
Q Consensus 343 -~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~ 377 (569)
.|.+...|+||+||+|| |++|. |.|+++.|...
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999877554
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.8e-41 Score=359.96 Aligned_cols=280 Identities=18% Similarity=0.262 Sum_probs=196.9
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHH
Q 008345 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (569)
Q Consensus 56 ~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~ 135 (569)
.++.|+|++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~--- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS--- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---
Confidence 35679999999999999999999999998765 3678999999999999999877643 2222111110
Q ss_pred HHHHHcCCCCEEEECcHHHHHHHhh-------cCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc-CCCCcEEEEEe
Q 008345 136 QFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (569)
Q Consensus 136 ~~~~l~~~~~IiV~Tp~rl~~~l~~-------~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~-~~~~q~ll~SA 207 (569)
.|+||+++.+++.. .....+.++++||+||+|++ +.++...+..+.... +..+|+++|||
T Consensus 71 -----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 71 -----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp -----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred -----------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 26666655433221 12245889999999999998 433333333332222 36799999999
Q ss_pred cCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHH
Q 008345 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR 287 (569)
Q Consensus 208 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~ 287 (569)
|+++.+..++.. ......+.. .++... ...++..+.+ .+.++||||+|++.++.+++.|.
T Consensus 139 T~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~-~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~ 198 (440)
T 1yks_A 139 TPPGTSDEFPHS---NGEIEDVQT-------------DIPSEP-WNTGHDWILA---DKRPTAWFLPSIRAANVMAASLR 198 (440)
T ss_dssp SCTTCCCSSCCC---SSCEEEEEC-------------CCCSSC-CSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhc---CCCeeEeee-------------ccChHH-HHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 998764322221 111111110 111111 1112233333 36899999999999999999999
Q ss_pred HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE-------------------cCCCCChh
Q 008345 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------------------WDFPPKPK 348 (569)
Q Consensus 288 ~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~-------------------~d~p~s~~ 348 (569)
..++.+..+|| .+|..+++.|++|+++|||||+++++|+|+| +++||+ ++.|.+..
T Consensus 199 ~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~ 273 (440)
T 1yks_A 199 KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 273 (440)
T ss_dssp HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHH
T ss_pred HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHH
Confidence 99999999999 3578889999999999999999999999999 999986 88999999
Q ss_pred HHHHHhhccccC-CCccEEEEEe---ccccHHHHHHHHHHh
Q 008345 349 IFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (569)
Q Consensus 349 ~~~qrvGR~gR~-g~~G~~i~~v---~~~e~~~~~~l~~~l 385 (569)
+|+||+||+||. |++|.|++|+ ++.+..++..++..+
T Consensus 274 ~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 274 SAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999998 6899999996 677777777666544
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.2e-40 Score=366.71 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=220.6
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc
Q 008345 37 AIKRKGYK-----VPTPIQR-----KTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (569)
Q Consensus 37 ~l~~~g~~-----~~t~iQ~-----~~i~~il------~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~ 100 (569)
+|..+||. .|||+|+ ++||.++ .++|+++.|+||||||++|++|+++.+.. .+.++||++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 56667888 8999999 9999988 89999999999999999999999988765 367899999
Q ss_pred CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 101 PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
||++||.|+++.++.+. +. ...+. .. ..-..+.-+-+.+.+.+.+.+.. ...+.++++||+||||++
T Consensus 278 PTr~La~Q~~~~l~~~~----i~--~~~~~--l~---~v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP----VR--YLTPA--VQ---REHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCC----ee--eeccc--cc---ccCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc
Confidence 99999999988776442 22 11110 00 00011223444555555555543 356899999999999998
Q ss_pred CCCChHHHHHHHHHhcC-CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHH
Q 008345 181 FGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll 259 (569)
+..+...+..+...++ ..+|+++||||+++.+..+... +.....+... +... ....++..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~-------------~~~~-~~~~~l~~l 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE-------------IPDR-AWSSGFEWI 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC-------------CCSS-CCSSCCHHH
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee-------------cCHH-HHHHHHHHH
Confidence 2222333333333333 6799999999998764322211 1111111110 1111 111122333
Q ss_pred HHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEE
Q 008345 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (569)
Q Consensus 260 ~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI 339 (569)
. ..+.++||||+|+++++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+| +++||
T Consensus 407 ~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 T---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp H---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred H---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 2 257899999999999999999999999999999994 788899999999999999999999999999 99999
Q ss_pred E--------------------cCCCCChhHHHHHhhccccC-CCccEEEEEe---ccccHHHHHHHHHHh
Q 008345 340 N--------------------WDFPPKPKIFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (569)
Q Consensus 340 ~--------------------~d~p~s~~~~~qrvGR~gR~-g~~G~~i~~v---~~~e~~~~~~l~~~l 385 (569)
+ ||+|.+..+|+||+||+||. |++|.|++|+ ++.|..++..++..+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 8 67899999999999999999 7899999996 567766666665543
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.3e-37 Score=306.27 Aligned_cols=212 Identities=36% Similarity=0.573 Sum_probs=195.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC---CCCCeEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~---~~~g~~~ 96 (569)
+...+|++++|++.+++++.++||..|||+|.+++|.++.|+|+++.||||||||++|++|++..+.... ...+.++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999887532 1346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
||++||++|+.|+++.++.+....++++..++||.....+...+..+++|+|+||++|.+++.. ....+.++++||+||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDE 184 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeC
Confidence 9999999999999999999998889999999999999988888888999999999999999986 457789999999999
Q ss_pred CCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc
Q 008345 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (569)
Q Consensus 177 ah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (569)
||++.+++|...+..++..+++.+|+++||||+|+.+..+++.++.+|..+.++..
T Consensus 185 ah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 185 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999998887643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.8e-39 Score=348.90 Aligned_cols=282 Identities=18% Similarity=0.212 Sum_probs=199.6
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
|+.++..+| ...+..++++++.||||||||++|++|+++.+.. .+.++||++|||+|+.|+++.++ +
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g 72 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------G 72 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------T
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------C
Confidence 444444444 3345668999999999999999999999988765 36789999999999999888776 3
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc-----CCCChHHHHHHHHHhc
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-----FGMGFAEQLHKILGQL 196 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l-----~~~~f~~~l~~i~~~~ 196 (569)
+.+....+.... .-..+..+.++|.+.+.+.+.. ...++++++|||||||++ +.++|..... .
T Consensus 73 ~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~ 140 (459)
T 2z83_A 73 LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----E 140 (459)
T ss_dssp SCEEECC-------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----H
T ss_pred ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----c
Confidence 333322221111 0123456788999988877764 366889999999999984 3333332221 2
Q ss_pred CCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcCh
Q 008345 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK 276 (569)
Q Consensus 197 ~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~ 276 (569)
+..+|+++||||+|..+..+... ..|... +... . + ......++..+.+ .++++||||+|+
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~~--~-----------~-~~~~~~~~~~l~~---~~~~~LVF~~s~ 200 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQDE--I-----------P-DRAWSSGYEWITE---YAGKTVWFVASV 200 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECC--C-----------C-SSCCSSCCHHHHH---CCSCEEEECSCH
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEE-eccc--C-----------C-cchhHHHHHHHHh---cCCCEEEEeCCh
Confidence 36799999999998764332211 122211 1100 0 0 0011112233433 267999999999
Q ss_pred hhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEE----------------
Q 008345 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN---------------- 340 (569)
Q Consensus 277 ~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~---------------- 340 (569)
..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 201 ~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~ 275 (459)
T 2z83_A 201 KMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGR 275 (459)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCE
T ss_pred HHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccc
Confidence 99999999999999999999995 6778899999999999999999999999999 99999
Q ss_pred ----cCCCCChhHHHHHhhccccCCC-ccEEEEEeccc
Q 008345 341 ----WDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTSE 373 (569)
Q Consensus 341 ----~d~p~s~~~~~qrvGR~gR~g~-~G~~i~~v~~~ 373 (569)
||.|.+...|+||+||+||.|. +|.+++|+++.
T Consensus 276 ~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 276 VILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 51
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-36 Score=289.41 Aligned_cols=203 Identities=32% Similarity=0.615 Sum_probs=187.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
+.+|++++|++.++++|.++||..|+|+|.++++.++.++|+++.+|||||||++|++|+++.+... ..+.++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 4679999999999999999999999999999999999999999999999999999999999887543 24578999999
Q ss_pred cHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc
Q 008345 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l 180 (569)
|++|+.|+++.++.+.... ++.+..++||.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHh
Confidence 9999999999999988776 8899999999998888777788999999999999998876 4567889999999999999
Q ss_pred CCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeee
Q 008345 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (569)
Q Consensus 181 ~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i 227 (569)
.+.+|...+..++..++..+|++++|||+|+.+.++++.++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999998655
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3.6e-37 Score=328.46 Aligned_cols=270 Identities=17% Similarity=0.222 Sum_probs=198.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 138 (569)
.|+++++.||||||||++|++|+++.+.. .|.+++|++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 37899999999999999999999977654 36789999999999999887664 4555555554221
Q ss_pred HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhc-CCCCcEEEEEecCChHHHHHH
Q 008345 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 139 ~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~-~~~~q~ll~SAT~~~~~~~~~ 217 (569)
.-..+..+.+.|.+.+.+.+.. ...+.++++||+||+|++ +.++......+.... +..+|+++||||+++.+..+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1123566788899988877765 456889999999999997 444444444443332 568999999999987432211
Q ss_pred HhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeec
Q 008345 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (569)
Q Consensus 218 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~ 297 (569)
. .++..+.+... .+ ..+...++..+.+ .++++||||+++++++.+++.|...++.+..+|
T Consensus 143 ~---~~~~i~~~~~~-------------~~-~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 143 P---SNSPIIDEETR-------------IP-DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp C---CSSCCEEEECC-------------CC-SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred C---CCCceeecccc-------------CC-HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 11111111110 00 1111223344443 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCE-----------------EEEcCCCCChhHHHHHhhccccC
Q 008345 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------------VINWDFPPKPKIFVHRVGRAARA 360 (569)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~-----------------VI~~d~p~s~~~~~qrvGR~gR~ 360 (569)
|+ .|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 577889999999999999999999999999 555 67889999999999999999999
Q ss_pred CC-ccEEEEEec
Q 008345 361 GR-TGTAFSFVT 371 (569)
Q Consensus 361 g~-~G~~i~~v~ 371 (569)
|. .|.++++..
T Consensus 278 g~~~~~~~~~~~ 289 (431)
T 2v6i_A 278 PEKLGDIYAYSG 289 (431)
T ss_dssp TTCCCCEEEECS
T ss_pred CCCCCeEEEEcC
Confidence 85 566666663
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=312.23 Aligned_cols=205 Identities=33% Similarity=0.573 Sum_probs=185.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
..+|++++|++.++++|..+||..|||+|.++||.++.| +|++++||||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEEE
Confidence 357999999999999999999999999999999999997 9999999999999999999999998653 245689999
Q ss_pred cCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
+|||+||.|+++.++.++... ++.+...+||....... ..+++|+|||||+|++++.+.+.++++++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998764 78899999987654332 46789999999999999977566789999999999999
Q ss_pred ccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecc
Q 008345 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (569)
Q Consensus 179 ~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (569)
++++ .+|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9997 7899999999999999999999999999999999999999999887753
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=299.43 Aligned_cols=207 Identities=37% Similarity=0.632 Sum_probs=191.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+|+++.|+||||||++|++|+++.+.... .+.++||++|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--QRLFALVLTP 119 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--CSSCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--CCceEEEEeC
Confidence 35799999999999999999999999999999999999999999999999999999999999887642 3567999999
Q ss_pred cHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 102 treLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
|++|+.|+++.++.++...++++..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||+||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999988889999999999998888888888999999999999999987556778999999999999999
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeec
Q 008345 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 182 ~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (569)
+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.++
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999887653
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.9e-37 Score=303.14 Aligned_cols=220 Identities=37% Similarity=0.597 Sum_probs=190.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-------CCCC
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGG 93 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-------~~~g 93 (569)
.-.+|++|+|++.++++|..+||..|+|+|.++++.++.|+|+++.||||||||++|++|+++.+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 345799999999999999999999999999999999999999999999999999999999999886532 1235
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEE
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iV 173 (569)
.++||++||++|+.|+++.++.++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEE
Confidence 6899999999999999999999988889999999999998888888888999999999999999886 456789999999
Q ss_pred EeCCCccCCCChHHHHHHHHHh--cCC--CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceE
Q 008345 174 FDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~--~~~--~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~ 241 (569)
+||||++.+++|...+..++.. ++. .+|+++||||+|+.+..+++.++.+|..+.+.......+++.+
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999985 444 6899999999999999999999999998888766555444444
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=295.10 Aligned_cols=208 Identities=36% Similarity=0.614 Sum_probs=182.8
Q ss_pred cCCCCCCCC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC----CCCC
Q 008345 19 KSKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGG 93 (569)
Q Consensus 19 ~~~~~~f~~-l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~----~~~g 93 (569)
.+...+|++ +++++.++++|.++||..|||+|.++++.++.|+|+++.||||||||++|++|++..+.... ...+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 355678998 79999999999999999999999999999999999999999999999999999998876421 1256
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEE
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iV 173 (569)
.++||++||++|+.|+.+.++.+. ..++++..++||.....+...+..+++|+|+||+++.+++.. ....+.++++||
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lV 172 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLV 172 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEE
Confidence 789999999999999999999986 568899999999988888888888999999999999998876 457789999999
Q ss_pred EeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeee
Q 008345 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (569)
Q Consensus 174 iDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~ 228 (569)
+||||++.+++|...+..++..+++++|+++||||+|+.+..++..++.+|..+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 9999999999999999999999999999999999999999999999999998764
No 57
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.6e-36 Score=292.97 Aligned_cols=209 Identities=32% Similarity=0.523 Sum_probs=185.2
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEE
Q 008345 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (569)
Q Consensus 18 ~~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~L 97 (569)
......+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++|
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~l 96 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQIL 96 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEE
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEE
Confidence 33456789999999999999999999999999999999999999999999999999999999999987643 2457899
Q ss_pred EEcCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 98 ILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
|++||++|+.|+++.++.++... ++++..++||.....+...+ .+++|+|+||+++.+++.. ..+.+.++++||+||
T Consensus 97 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 97 ILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDE 174 (230)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCC
Confidence 99999999999999999987664 89999999999887776554 5799999999999998876 457788999999999
Q ss_pred CCccCCCC-hHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeec
Q 008345 177 ADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 177 ah~l~~~~-f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (569)
||++.+++ |...+..++..++..+|+++||||+|+.+.+++..++.+|..+.++
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 99999997 9999999999999999999999999999999999999999877653
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.6e-36 Score=292.85 Aligned_cols=209 Identities=36% Similarity=0.669 Sum_probs=188.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC--CCCCeEEEEE
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~--~~~g~~~Lil 99 (569)
..+|+++++++.++++|.++||..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+.... ...+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999998876432 1246789999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||++|+.|+.+.++.++...++.+..++||.....+...+ .+++|+|+||+++.+++.....+.+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998877666555 57999999999999998875457788999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecc
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (569)
+.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.++.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999998887643
No 59
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=299.94 Aligned_cols=205 Identities=39% Similarity=0.623 Sum_probs=184.6
Q ss_pred CCCCCCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC--CCCCeEEE
Q 008345 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRAL 97 (569)
Q Consensus 22 ~~~f~~l~--l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~--~~~g~~~L 97 (569)
..+|++++ +++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+.... ...+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 34677777 999999999999999999999999999999999999999999999999999999887532 12467899
Q ss_pred EEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCC
Q 008345 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 98 il~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEa 177 (569)
|++||++|+.|+++.+++++...+..+..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||+|||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999888999999999999888888888889999999999999998765678899999999999
Q ss_pred CccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCee
Q 008345 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHL 226 (569)
Q Consensus 178 h~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~ 226 (569)
|++.+++|...+..++..++..+|+++||||+|+.+..+++..+.++..
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999876544
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.7e-36 Score=295.06 Aligned_cols=208 Identities=33% Similarity=0.577 Sum_probs=178.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
....+|++++|++.++++|.++||..|+|+|.++++.++.|+|+++.||||||||++|++|+++.+... ..+.++||+
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil 104 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVL 104 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 345679999999999999999999999999999999999999999999999999999999999987643 235689999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCC-CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~-~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
+||++|+.|+++.++.++...++.+..++||.....+...+..+ ++|+|+||+++.+++.. ..+.+.++++||+||||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 105 APTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHH
T ss_pred ECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCch
Confidence 99999999999999999988899999999998877776666555 99999999999999876 45778899999999999
Q ss_pred ccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeec
Q 008345 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 179 ~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (569)
++.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.++
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999887664
No 61
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-36 Score=292.97 Aligned_cols=206 Identities=32% Similarity=0.584 Sum_probs=186.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.+|++++|++.+++++.++||..|+|+|.++++.+++|+|+++.+|||||||++|++|+++.+... ..+.++||++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 81 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCc
Confidence 579999999999999999999999999999999999999999999999999999999999987643 235789999999
Q ss_pred HHHHHHHHHHHHHhcccC----CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 103 RDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~----~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
++|+.|+++.++++.... ++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999988766 7889999999877666555556899999999999998876 45778899999999999
Q ss_pred ccCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeecc
Q 008345 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (569)
Q Consensus 179 ~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~ 231 (569)
++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+..
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999999999999999999999998876543
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.8e-34 Score=311.09 Aligned_cols=319 Identities=20% Similarity=0.213 Sum_probs=243.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
+|.. |+++|.-..-.+..|+ |+...||+|||+++.+|++-... .|..+.|++|++.||.|-.+++..+..+.
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-----~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-----IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-----cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 5877 9999999988888887 99999999999999999975543 26779999999999999999999999999
Q ss_pred CCeEEEEEcC--------------------------------------------------CCHHHHHHHHcCCCCEEEEC
Q 008345 121 DLRISLLVGG--------------------------------------------------DSMESQFEELAQNPDIIIAT 150 (569)
Q Consensus 121 ~l~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~IiV~T 150 (569)
|+++++++.. .+.++..... .+||..||
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEcc
Confidence 9999999982 1122222222 47999999
Q ss_pred cHHH-HHHHhhc-----CCCCCCCeeEEEEeCCCccCCC-------------C---hHHHHHHHHHhc------------
Q 008345 151 PGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM-------------G---FAEQLHKILGQL------------ 196 (569)
Q Consensus 151 p~rl-~~~l~~~-----~~~~l~~l~~iViDEah~l~~~-------------~---f~~~l~~i~~~~------------ 196 (569)
...| +++|..+ ...-...+.+.|+||+|.++=. . ....+..++..+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9887 5666542 1222456889999999975400 0 111111111110
Q ss_pred --------------------------------------------CC-----------------------C----------
Q 008345 197 --------------------------------------------SE-----------------------N---------- 199 (569)
Q Consensus 197 --------------------------------------------~~-----------------------~---------- 199 (569)
.. +
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 00 0
Q ss_pred ----------------------------CcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceE-EEEEcchhh
Q 008345 200 ----------------------------RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL-AFFTLRQEE 250 (569)
Q Consensus 200 ----------------------------~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~ 250 (569)
.++.+||+|...+..+|...+-- ..+.++.... .....+ ..+.....+
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnkp-~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHKP-MIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSSC-CCCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCCC-cceeecCcEEEecHHH
Confidence 14789999999888888777643 3444433322 222222 345667788
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
|..++...+......+.++||||+|++.++.++..|...|+++..+||+..+.++..+...|+.| .|+||||+|+||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 99999999987666688999999999999999999999999999999985555555555555555 6999999999999
Q ss_pred CCC--------CCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 331 DIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 331 Dip--------~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
||+ +..+|||+++|.+++.|+||+|||||+|.+|.+++|++.+|
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 998 66799999999999999999999999999999999999877
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.2e-36 Score=330.60 Aligned_cols=301 Identities=16% Similarity=0.184 Sum_probs=189.8
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHhhhcC-----CCCCeEEEEEcCcHHHHHHHH-HHH
Q 008345 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTL-KFT 113 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~----g-~dvl~~a~TGSGKT~a~lip~l~~l~~~~-----~~~g~~~Lil~PtreLa~Q~~-~~~ 113 (569)
.|+|+|.++++.++. + +++++.++||||||++++..+ ..+.... ...+.++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999999876 4 669999999999999966544 4443321 114678999999999999988 666
Q ss_pred HHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhh---cCCCCCCCeeEEEEeCCCccCCCChHHHHH
Q 008345 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE---VEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (569)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~---~~~~~l~~l~~iViDEah~l~~~~f~~~l~ 190 (569)
+.++ ..+..+.++. ...+.+|+|+||++|...... ...++...+++||+||||++...+ ...+.
T Consensus 257 ~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 6654 3333333332 345789999999999876532 123566789999999999987653 24566
Q ss_pred HHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCC------------------eeeeeccccccC-------------CCc
Q 008345 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDP------------------HLVRLDVDTKIS-------------PDL 239 (569)
Q Consensus 191 ~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~------------------~~i~~~~~~~~~-------------~~~ 239 (569)
.++..++ ..++++||||+......-....++.+ ..+.+....... ..+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777776 47899999998743222222222222 222221110000 000
Q ss_pred eEEEEEcch-------hhHHHHH----HHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCC--------ceeecCCC
Q 008345 240 KLAFFTLRQ-------EEKHAAL----LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE--------PSVCYGDM 300 (569)
Q Consensus 240 ~~~~~~~~~-------~~k~~~L----~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~--------~~~i~g~l 300 (569)
....+.... ..+...+ ...+... ..++++||||+++.+++.++..|...+.. +..+||.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 000000000 1122222 2233332 45689999999999999999999875432 66789987
Q ss_pred CHHHHHHHHHHHhcCCce---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCC
Q 008345 301 DQDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (569)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~---ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~ 362 (569)
++ .|..++++|++|+.+ |||+|+++++|+|+|++++||+++.|.++..|+||+||+||.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998866 88999999999999999999999999999999999999999875
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.5e-35 Score=281.40 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=186.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCc
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPT 102 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-~~~g~~~Lil~Pt 102 (569)
+|++++|++.+++++.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.... ...+.++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 599999999999999999999999999999999999999999999999999999999999886422 2346789999999
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC
Q 008345 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (569)
Q Consensus 103 reLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~ 182 (569)
++|+.|+++.++.+... +++..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998654 788899999988888777778899999999999999887 567789999999999999999
Q ss_pred CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeec
Q 008345 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (569)
Q Consensus 183 ~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~ 230 (569)
++|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999887653
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2.7e-35 Score=285.99 Aligned_cols=209 Identities=31% Similarity=0.551 Sum_probs=180.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEE
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil 99 (569)
+...+|++++|++.+++++.++||..|+|+|.++++.++.|+|+++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil 88 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 88 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEE
Confidence 445689999999999999999999999999999999999999999999999999999999999988653 245689999
Q ss_pred cCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCc
Q 008345 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (569)
Q Consensus 100 ~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~ 179 (569)
+||++|+.|+++.++.+....++++..++||.....+...+. +++|+|+||+++.+.+.. ....+.++++||+||||+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhH
Confidence 999999999999999998888999999999988776655544 499999999999998876 457789999999999999
Q ss_pred cCCCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc
Q 008345 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (569)
Q Consensus 180 l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (569)
+.+++|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.++.+
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988876544
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.4e-35 Score=282.59 Aligned_cols=207 Identities=29% Similarity=0.559 Sum_probs=183.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 008345 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (569)
Q Consensus 19 ~~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Li 98 (569)
.....+|++++|++.++++|.++||..|+|+|.++++.+++++|+++.+|||||||++|++|+++.+... ..+.++||
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 87 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLV 87 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEE
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEE
Confidence 3455789999999999999999999999999999999999999999999999999999999999887543 23458999
Q ss_pred EcCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeC
Q 008345 99 LSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (569)
Q Consensus 99 l~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDE 176 (569)
++||++|+.|+++.++++.... ++++..++||.....+...+. ..++|+|+||+++.+++.. ..+.+.+++++|+||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDE 166 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcC
Confidence 9999999999999999988765 899999999998887776665 4679999999999998876 457789999999999
Q ss_pred CCccCC-CChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCCeeee
Q 008345 177 ADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (569)
Q Consensus 177 ah~l~~-~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~ 228 (569)
||++.+ .+|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999987 5888999999999999999999999999999999999999997764
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.6e-35 Score=328.97 Aligned_cols=311 Identities=17% Similarity=0.202 Sum_probs=220.3
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 008345 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (569)
Q Consensus 31 ~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~ 110 (569)
..+-++++..+++ |.++ ......+.|++++++||||||||+ ++++.+... ..++|++|||+||.|++
T Consensus 130 ~~d~l~~i~dl~~--p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp CHHHHHHHTBCCC--GGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHH
T ss_pred CHHHHHHHhhccC--hhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHH
Confidence 3445555544433 3322 223345689999999999999998 444444442 23599999999999999
Q ss_pred HHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHH
Q 008345 111 KFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (569)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~ 190 (569)
+.++.. ++.+..++|+..... ..-....+++++|++.+. ....+++|||||||++.+.+|...+.
T Consensus 197 ~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 197 EKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHH
Confidence 988775 578888998865300 000012556666664221 24678999999999999999999999
Q ss_pred HHHHhcC-CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcE
Q 008345 191 KILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (569)
Q Consensus 191 ~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 269 (569)
.++..++ ...+++++|||.+ .+..+.... ..+..+... ... ... .+. .. .+..+.. .....
T Consensus 262 ~~l~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~--~r~-~~l--~~~--~~------~l~~l~~---~~~g~ 323 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDY--KRL-TPI--SVL--DH------ALESLDN---LRPGD 323 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEEC--CCS-SCE--EEC--SS------CCCSGGG---CCTTE
T ss_pred HHHHccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEe--eec-chH--HHH--HH------HHHHHHh---cCCCC
Confidence 9999888 6789999999953 344444433 222222111 000 001 110 00 0001111 13456
Q ss_pred EEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCCCEEEEcCC----
Q 008345 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---- 343 (569)
Q Consensus 270 IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~--g~~~ILV~Tdv~arGlDip~v~~VI~~d~---- 343 (569)
||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ----------CCChhHHHHHhhccccCCCc---cEEEEEeccccHHHHHHHHHHhCCCc
Q 008345 344 ----------PPKPKIFVHRVGRAARAGRT---GTAFSFVTSEDMAYLLDLHLFLSKPI 389 (569)
Q Consensus 344 ----------p~s~~~~~qrvGR~gR~g~~---G~~i~~v~~~e~~~~~~l~~~l~~~~ 389 (569)
|.+...|+||+||+||.|.. |.++.+ .+++...+..+......++
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~~~i 460 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTM-NHEDLSLLKEILKRPVDPI 460 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEES-STTHHHHHHHHHHSCCCCC
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEE-ecchHHHHHHHHhcCcchh
Confidence 78999999999999999965 665554 4556666665544433333
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.4e-34 Score=332.83 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g--~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (569)
.|+|+|.+++..++.. ..+++.++||+|||.+++..+...+... ...++|||||+ .|+.||...+.+.. ++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRRF---NL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHHS---CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHHh---CC
Confidence 5999999999988874 5799999999999999987777665443 23479999999 99999888775432 56
Q ss_pred eEEEEEcCCCHHHHHH--HHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChH-HHHHHHHHhc-CC
Q 008345 123 RISLLVGGDSMESQFE--ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQL-SE 198 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~--~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~-~~l~~i~~~~-~~ 198 (569)
.+..+.|+........ ......+|+|+|++.+.........+...++++||+||||++.+.+.. ......+..+ ..
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 6665554432221110 111357999999998864322111233557899999999999764421 1112222222 24
Q ss_pred CCcEEEEEecCCh-H---HHHH----------------------------HHhcCCC-----------------------
Q 008345 199 NRQTLLFSATLPS-A---LAEF----------------------------AKAGLRD----------------------- 223 (569)
Q Consensus 199 ~~q~ll~SAT~~~-~---~~~~----------------------------~~~~l~~----------------------- 223 (569)
.++++++||||.. . +..+ .......
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 5679999999832 1 0000 0000000
Q ss_pred -----------------------------Ceeeeecc---ccccCCCceEEEE---------------------------
Q 008345 224 -----------------------------PHLVRLDV---DTKISPDLKLAFF--------------------------- 244 (569)
Q Consensus 224 -----------------------------~~~i~~~~---~~~~~~~~~~~~~--------------------------- 244 (569)
...++... .............
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRAR 465 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHh
Confidence 00000000 0000000000001
Q ss_pred ------------------EcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH-CCCCceeecCCCCHHHH
Q 008345 245 ------------------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDAR 305 (569)
Q Consensus 245 ------------------~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~-~~~~~~~i~g~l~~~~R 305 (569)
.+....|...|..++.. ..+.++||||+++.+++.+...|.. .|+.+..+||+|++.+|
T Consensus 466 ~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 466 DMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp HHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred hhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 12234577788888876 3678999999999999999999994 69999999999999999
Q ss_pred HHHHHHHhcCC--ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEecc
Q 008345 306 KIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (569)
Q Consensus 306 ~~~l~~F~~g~--~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~ 372 (569)
..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|.||+||+||.|+.|.+++++..
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 99999999998 99999999999999999999999999999999999999999999999866555433
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=284.90 Aligned_cols=211 Identities=34% Similarity=0.554 Sum_probs=181.1
Q ss_pred CCCCCCCC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEE
Q 008345 21 KSGGFESL----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (569)
Q Consensus 21 ~~~~f~~l----~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~ 96 (569)
.-.+|+++ ++++.+++++.++||..|||+|.++++.++.|+|+++.||||||||++|++|+++.+... ...+.++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~ 101 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRA 101 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCE
T ss_pred cccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceE
Confidence 34578877 899999999999999999999999999999999999999999999999999999988643 2346789
Q ss_pred EEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHH-HHHcCCCCEEEECcHHHHHHHhhcC-CCCCCCeeEEEE
Q 008345 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-EELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVF 174 (569)
Q Consensus 97 Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~-~~l~~~~~IiV~Tp~rl~~~l~~~~-~~~l~~l~~iVi 174 (569)
||++||++|+.|+++.++++....++.+..++|+......+ .....+++|+|+||+++.+++.... .+.+.++++||+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 102 LIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 99999999999999999999888889888888765433222 1224578999999999999997643 467899999999
Q ss_pred eCCCccCC---CChHHHHHHHHHhcC-CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccc
Q 008345 175 DEADCLFG---MGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (569)
Q Consensus 175 DEah~l~~---~~f~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 232 (569)
||||++.+ .+|...+..++..+. ...|+++||||+|+.+..+++.++.+|..+.++..
T Consensus 182 DEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 182 DESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred eChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999987 679999999987764 57899999999999999999999999998887654
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.8e-33 Score=303.40 Aligned_cols=311 Identities=17% Similarity=0.235 Sum_probs=222.1
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|+|+|.++++.+. .++++++.++||+|||++++..+. .+... ....++|||||+ .|+.||.+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~--~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE--NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT--TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc--CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 59999999998763 478899999999999998765444 33322 134579999995 588999999998863
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
++++..++|+... .....++|+|+||+++.+... +....+++||+||||++.+.+ ......+..++ ..
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 5667766666532 112468999999999875433 234568999999999998765 23445555564 45
Q ss_pred cEEEEEecCChH-HHHHH------------------------------------HhcCCCCeeeeeccc-----cccCCC
Q 008345 201 QTLLFSATLPSA-LAEFA------------------------------------KAGLRDPHLVRLDVD-----TKISPD 238 (569)
Q Consensus 201 q~ll~SAT~~~~-~~~~~------------------------------------~~~l~~~~~i~~~~~-----~~~~~~ 238 (569)
+.+++||||... +.++. ...+ .|..++.... ...++
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~- 256 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPD- 256 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCC-
Confidence 789999998431 11111 0111 1222221110 01111
Q ss_pred ceEEEEEcc---------------------------------------------------------hhhHHHHHHHHHHH
Q 008345 239 LKLAFFTLR---------------------------------------------------------QEEKHAALLYMIRE 261 (569)
Q Consensus 239 ~~~~~~~~~---------------------------------------------------------~~~k~~~L~~ll~~ 261 (569)
.....+.+. ...|...+..++.+
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 111111111 12345556677777
Q ss_pred hcCCCCcEEEEEcChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcC-Cce-EEEEeccccccCCCCCCCEE
Q 008345 262 HISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVTDVAARGIDIPLLDNV 338 (569)
Q Consensus 262 ~~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~R~~~l~~F~~g-~~~-ILV~Tdv~arGlDip~v~~V 338 (569)
....+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|+++++|+|+|.+++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 6677899999999999999999999885 99999999999999999999999998 555 78999999999999999999
Q ss_pred EEcCCCCChhHHHHHhhccccCCCccEE--EEEeccccH
Q 008345 339 INWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (569)
Q Consensus 339 I~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~~e~ 375 (569)
|+||+|+++..|.||+||++|.|+.+.+ |.++..+.+
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 9999999999999999999999987654 666766543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=9.8e-33 Score=318.67 Aligned_cols=313 Identities=17% Similarity=0.137 Sum_probs=216.1
Q ss_pred CChHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILS--------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~--------------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~ 110 (569)
.|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 599999999999876 368999999999999997 6666554432 23468999999999999999
Q ss_pred HHHHHhcccCCCeEEEEEcCCCHHHHHHHHc-CCCCEEEECcHHHHHHHhhcCCC-CCCCeeEEEEeCCCccCCCChHHH
Q 008345 111 KFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ 188 (569)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tp~rl~~~l~~~~~~-~l~~l~~iViDEah~l~~~~f~~~ 188 (569)
+.+..++.. .+.++.+...+...+. .+++|+|+||++|..++.....+ .+....+||+||||++.. ...
T Consensus 348 ~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~ 418 (1038)
T 2w00_A 348 KEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEA 418 (1038)
T ss_dssp HHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHH
T ss_pred HHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHH
Confidence 988887643 1245556666656664 57999999999999887653222 356788999999999653 233
Q ss_pred HHHHHHhcCCCCcEEEEEecCChHH--------HH-------------HHHhcCCCCeeeeecc-cccc-----C-C---
Q 008345 189 LHKILGQLSENRQTLLFSATLPSAL--------AE-------------FAKAGLRDPHLVRLDV-DTKI-----S-P--- 237 (569)
Q Consensus 189 l~~i~~~~~~~~q~ll~SAT~~~~~--------~~-------------~~~~~l~~~~~i~~~~-~~~~-----~-~--- 237 (569)
...+...+| +.++++|||||.... .. .+..+.--|..+.... .... . .
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 556667776 478999999996421 11 1122222222211100 0000 0 0
Q ss_pred --CceEEEEEcchhhHHHHHHHHHHHhc----------CCCCcEEEEEcChhhHHHHHHHHHHCC------------CCc
Q 008345 238 --DLKLAFFTLRQEEKHAALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEG------------LEP 293 (569)
Q Consensus 238 --~~~~~~~~~~~~~k~~~L~~ll~~~~----------~~~~~~IIF~~t~~~~~~l~~~L~~~~------------~~~ 293 (569)
.+.... .+....+...+...+..+. ..+.++||||+|+.+|..++..|...+ +.+
T Consensus 498 ~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 498 LSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 000000 0012223334333232211 134689999999999999999997654 455
Q ss_pred e-eecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCceEEEEe
Q 008345 294 S-VCYGD----------M----------DQD-----------------------------ARKIHVSRFRARKTMFLIVT 323 (569)
Q Consensus 294 ~-~i~g~----------l----------~~~-----------------------------~R~~~l~~F~~g~~~ILV~T 323 (569)
. ++||+ + ++. .|..++++|++|+++|||+|
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvv 656 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVV 656 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEES
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEc
Confidence 3 44432 2 222 37888999999999999999
Q ss_pred ccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCc----cEEEEEecc
Q 008345 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT----GTAFSFVTS 372 (569)
Q Consensus 324 dv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~----G~~i~~v~~ 372 (569)
|++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999999 789999999999999999999998753 888888764
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.4e-29 Score=277.13 Aligned_cols=318 Identities=19% Similarity=0.236 Sum_probs=240.5
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
+|| .|||+|..++|.+++|+ ++.++||||||++|.+|++.... .|.+++|++||++||.|.++++..+.+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799 79999999999999998 99999999999999999964433 25679999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHH-HHHHhhcC-----CCCCC---CeeEEEEeCCCccC-CCC------
Q 008345 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLK---SVEYVVFDEADCLF-GMG------ 184 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl-~~~l~~~~-----~~~l~---~l~~iViDEah~l~-~~~------ 184 (569)
++++.+++||.+...... ..+++|+||||++| ++++...- .+.+. .+.++|+||+|+++ +.+
T Consensus 148 GLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp TCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 999999999988554433 34699999999999 88887631 35677 89999999999987 211
Q ss_pred ---------hHHHHHHHHHhcCCC--------------------------------------------------------
Q 008345 185 ---------FAEQLHKILGQLSEN-------------------------------------------------------- 199 (569)
Q Consensus 185 ---------f~~~l~~i~~~~~~~-------------------------------------------------------- 199 (569)
....+..++..++..
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 122333444333220
Q ss_pred -------------------------------------------------------------------------CcEEEEE
Q 008345 200 -------------------------------------------------------------------------RQTLLFS 206 (569)
Q Consensus 200 -------------------------------------------------------------------------~q~ll~S 206 (569)
..+.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 0356777
Q ss_pred ecCChHHHHHHHhcCCCCeeeeeccccccCCCce-EEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHH
Q 008345 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK-LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285 (569)
Q Consensus 207 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~ 285 (569)
+|...+..+|...|--+ .+.++..... .... ...++....+|..++...+.+....+.++||+|.|....+.++.+
T Consensus 386 GTA~tE~~Ef~~iY~l~--Vv~IPTn~p~-~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~ 462 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMD--VVVVPTNRPV-IRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQM 462 (997)
T ss_dssp SSCGGGHHHHHHHHCCC--EEECCCSSCC-CCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCC--EEEcCCCCCc-ccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHH
Confidence 77766666666655433 2333322211 1112 223445567899999998988888899999999999999999999
Q ss_pred HH----------------------------------------------------------------------------HC
Q 008345 286 FR----------------------------------------------------------------------------EE 289 (569)
Q Consensus 286 L~----------------------------------------------------------------------------~~ 289 (569)
|. ..
T Consensus 463 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (997)
T 2ipc_A 463 LKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQ 542 (997)
T ss_dssp HHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHc
Confidence 98 45
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCC-ceEEEEeccccccCCCCCC-------------------C-------------
Q 008345 290 GLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL-------------------D------------- 336 (569)
Q Consensus 290 ~~~~~~i~g~l~~~~R~~~l~~F~~g~-~~ILV~Tdv~arGlDip~v-------------------~------------- 336 (569)
|++..+++..-. +++.-+-. ..|. -.|-|||++|.||.||.-- .
T Consensus 543 gI~H~VLNAK~h--e~EAeIIA-qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (997)
T 2ipc_A 543 GIPHQVLNAKHH--AREAEIVA-QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAG 619 (997)
T ss_dssp CCCCCEECSSSH--HHHHHHHH-TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHT
T ss_pred CCCeeeccccch--HHHHHHHH-hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhccccccccccccccccccc
Confidence 677777776533 33322211 2343 4699999999999999743 1
Q ss_pred ------------------------------------------EEEEcCCCCChhHHHHHhhccccCCCccEEEEEecccc
Q 008345 337 ------------------------------------------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (569)
Q Consensus 337 ------------------------------------------~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e 374 (569)
+||-...+.|...=.|-.||+||.|.+|.+-.|++-+|
T Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 620 KEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred chhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888889999999999999999999999988888654
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=8.3e-29 Score=276.59 Aligned_cols=321 Identities=17% Similarity=0.209 Sum_probs=222.5
Q ss_pred CChHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCC--CCCeEEEEEcCcHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKFT 113 (569)
Q Consensus 45 ~~t~iQ~~~i~~il---------~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~--~~g~~~Lil~PtreLa~Q~~~~~ 113 (569)
.|+|+|.+++..+. .+..+|+..+||+|||+..+..+...+..... ....++|||+|+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999998874 34679999999999999888777665543321 123469999997 8889999988
Q ss_pred HHhcccCCCeEEEEEcCCCHHH--HHHH-HcC-----CCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCCh
Q 008345 114 KELGRYTDLRISLLVGGDSMES--QFEE-LAQ-----NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (569)
Q Consensus 114 ~~~~~~~~l~~~~~~gg~~~~~--~~~~-l~~-----~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f 185 (569)
.++... .+.+..++||..... .... +.. ..+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 887644 466667777654322 1111 111 47899999999876543 3455678999999999998754
Q ss_pred HHHHHHHHHhcCCCCcEEEEEecCChH-------HH------------HHHHhcC-------------------------
Q 008345 186 AEQLHKILGQLSENRQTLLFSATLPSA-------LA------------EFAKAGL------------------------- 221 (569)
Q Consensus 186 ~~~l~~i~~~~~~~~q~ll~SAT~~~~-------~~------------~~~~~~l------------------------- 221 (569)
......+..++ ....+++||||-.. +. .|.+.+.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 23344445554 45679999998321 00 1111000
Q ss_pred ----CCCeeeeeccc---cccCCCceEEEEEcc-----------------------------------------------
Q 008345 222 ----RDPHLVRLDVD---TKISPDLKLAFFTLR----------------------------------------------- 247 (569)
Q Consensus 222 ----~~~~~i~~~~~---~~~~~~~~~~~~~~~----------------------------------------------- 247 (569)
-.|..++-..+ ...++.. ...+.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~-~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKI-EQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEE-EEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCce-EEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00001110000 0011111 1111111
Q ss_pred -------------------------------hhhHHHHHHHHHHHhc-CCCCcEEEEEcChhhHHHHHHHHHHCCCCcee
Q 008345 248 -------------------------------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSV 295 (569)
Q Consensus 248 -------------------------------~~~k~~~L~~ll~~~~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~ 295 (569)
...|...+..++.... ..+.++|||+++...++.+...|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0122223333333221 24789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCce---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCcc--EEEEEe
Q 008345 296 CYGDMDQDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFV 370 (569)
Q Consensus 296 i~g~l~~~~R~~~l~~F~~g~~~---ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G--~~i~~v 370 (569)
+||++++.+|..+++.|+++... +|++|+++++|+|++.+++||+||+|+++..+.|++||++|.|+.. .+|.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998764 8999999999999999999999999999999999999999999875 556677
Q ss_pred cccc
Q 008345 371 TSED 374 (569)
Q Consensus 371 ~~~e 374 (569)
+..-
T Consensus 526 ~~~t 529 (644)
T 1z3i_X 526 STGT 529 (644)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 7653
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=288.39 Aligned_cols=319 Identities=17% Similarity=0.220 Sum_probs=231.2
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|+|+|.+++..++ .++++|+..+||+|||+..+..+...+.... ...++||||| ..|+.|+.+.+.++. .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 59999999998765 6889999999999999987766554443321 2345899999 678899998888876 4
Q ss_pred CCeEEEEEcCCCHHHHHHH------------HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHH
Q 008345 121 DLRISLLVGGDSMESQFEE------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (569)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~------------l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~ 188 (569)
++.+..++|+......... ....++|+|+|++.+...... +.-..+++||+||||++-+.. ..
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--hH
Confidence 6777777777655443332 123678999999999865543 223468999999999997644 34
Q ss_pred HHHHHHhcCCCCcEEEEEecCC----hHHHHHHHhcC-----------------------------CCCeeeeecccccc
Q 008345 189 LHKILGQLSENRQTLLFSATLP----SALAEFAKAGL-----------------------------RDPHLVRLDVDTKI 235 (569)
Q Consensus 189 l~~i~~~~~~~~q~ll~SAT~~----~~~~~~~~~~l-----------------------------~~~~~i~~~~~~~~ 235 (569)
....+..++ ....+++||||- .++..+.+... -.|..++-......
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 455555554 445689999982 22222221110 01111111111000
Q ss_pred --CCCceEEEEEcc------------------------------------------------------------------
Q 008345 236 --SPDLKLAFFTLR------------------------------------------------------------------ 247 (569)
Q Consensus 236 --~~~~~~~~~~~~------------------------------------------------------------------ 247 (569)
.+......+.+.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 011111111111
Q ss_pred ---------hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 008345 248 ---------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (569)
Q Consensus 248 ---------~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ 318 (569)
...|...|..+|......+.++|||+.....++.+...|...|+.+..+||++++.+|..+++.|+++...
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 12355667777777777789999999999999999999999999999999999999999999999986554
Q ss_pred ---EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCc--cEEEEEecccc
Q 008345 319 ---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSED 374 (569)
Q Consensus 319 ---ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~--G~~i~~v~~~e 374 (569)
+|++|++++.|+|+|.+++||+||+|+++..+.||+||+.|.|++ ..+|.|++.+-
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999986 45577777763
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=1.1e-28 Score=275.56 Aligned_cols=176 Identities=20% Similarity=0.204 Sum_probs=138.1
Q ss_pred CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChh
Q 008345 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (569)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~ 277 (569)
..+|+++||||+++..... . ...+............. +...+...+...++..|......+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3578999999998653221 0 11122111110011111 11223345566777777776667889999999999
Q ss_pred hHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHHH
Q 008345 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (569)
Q Consensus 278 ~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~-----p~s~~~~~q 352 (569)
.++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HhhccccCCCccEEEEEeccccHHHHHHHH
Q 008345 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (569)
Q Consensus 353 rvGR~gR~g~~G~~i~~v~~~e~~~~~~l~ 382 (569)
|+||+||.+ .|.+++|+++.+......++
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999995 79999999987766555543
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.6e-27 Score=266.02 Aligned_cols=175 Identities=19% Similarity=0.178 Sum_probs=137.7
Q ss_pred CCCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChh
Q 008345 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (569)
Q Consensus 198 ~~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~ 277 (569)
..+|+++||||+++..... .... +............. +.......+...++..+......+.++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~--~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEM--VEQIIRPTGLLDPL--IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSC--EEECCCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCe--eeeeecccCCCCCe--EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 4689999999998653222 1111 11111110001111 11223344566777777777667889999999999
Q ss_pred hHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC-----CCChhHHHH
Q 008345 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (569)
Q Consensus 278 ~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~-----p~s~~~~~q 352 (569)
.++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhhccccCCCccEEEEEeccccHHHHHHH
Q 008345 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (569)
Q Consensus 353 rvGR~gR~g~~G~~i~~v~~~e~~~~~~l 381 (569)
|+||+||. ..|.+++|+++.+......+
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 99999998 78999999998776554443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=2.4e-27 Score=218.57 Aligned_cols=155 Identities=33% Similarity=0.509 Sum_probs=146.4
Q ss_pred cCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc
Q 008345 235 ISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (569)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~ 314 (569)
..+++.+.++.++...|...|..++... .+.++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567899999999999999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 315 g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
|+.+|||+|+++++|+|+|++++||+||+|.++..|+||+||+||.|++|.+++|+++.|..++.+++.+++.++..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877653
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=7.2e-28 Score=227.86 Aligned_cols=171 Identities=28% Similarity=0.436 Sum_probs=136.7
Q ss_pred HHhcCCCCeeeeeccccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceee
Q 008345 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (569)
Q Consensus 217 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i 296 (569)
.+.++.+|..+.+........++.+.++.++...|...|..++... +.++||||+++..++.++..|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 4567888988888877777789999999999999999999888653 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc-cH
Q 008345 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DM 375 (569)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~ 375 (569)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|++|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHhCCCcc
Q 008345 376 AYLLDLHLFLSKPIR 390 (569)
Q Consensus 376 ~~~~~l~~~l~~~~~ 390 (569)
.++..++..++....
T Consensus 165 ~~~~~l~~~l~~~~~ 179 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 777777776654433
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=217.66 Aligned_cols=157 Identities=27% Similarity=0.512 Sum_probs=141.2
Q ss_pred cCCCceEEEEEcchhh-HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHh
Q 008345 235 ISPDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313 (569)
Q Consensus 235 ~~~~~~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~ 313 (569)
...++.+.|+.++..+ |...|..++... ..+++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3467889999998765 999888888754 5679999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeccccccCCCCCCCEEEEcCCC------CChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCC
Q 008345 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (569)
Q Consensus 314 ~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p------~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~ 387 (569)
+|+.+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+++.+..++..++..++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999999999988
Q ss_pred CccCCC
Q 008345 388 PIRAAP 393 (569)
Q Consensus 388 ~~~~~~ 393 (569)
++...|
T Consensus 162 ~~~~~~ 167 (175)
T 2rb4_A 162 SIKQLN 167 (175)
T ss_dssp CCEEEC
T ss_pred cccccC
Confidence 766543
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=9.1e-27 Score=215.14 Aligned_cols=155 Identities=35% Similarity=0.575 Sum_probs=139.4
Q ss_pred CCceEEEEEcchhh-HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC
Q 008345 237 PDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (569)
Q Consensus 237 ~~~~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g 315 (569)
.++.+.|+.+...+ |...|..++... .++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 35778888888777 999999998875 568999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCCC
Q 008345 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (569)
Q Consensus 316 ~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~~ 393 (569)
+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++++..++..++.+++.++...|
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776655
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=9.3e-27 Score=216.59 Aligned_cols=158 Identities=27% Similarity=0.424 Sum_probs=144.7
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC
Q 008345 236 SPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (569)
Q Consensus 236 ~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g 315 (569)
...+.+.|+.+...+|...|..++... .+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 356889999999999999999999865 567999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccc-cHHHHHHHHHHhCCCccCCCC
Q 008345 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPS 394 (569)
Q Consensus 316 ~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~-e~~~~~~l~~~l~~~~~~~~~ 394 (569)
+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++. +..++..++..++.++...|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999975 567888898888888776654
Q ss_pred h
Q 008345 395 E 395 (569)
Q Consensus 395 ~ 395 (569)
.
T Consensus 161 ~ 161 (172)
T 1t5i_A 161 E 161 (172)
T ss_dssp -
T ss_pred h
Confidence 3
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=6.9e-26 Score=218.01 Aligned_cols=158 Identities=26% Similarity=0.403 Sum_probs=143.2
Q ss_pred ceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 008345 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (569)
Q Consensus 239 ~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ 318 (569)
+...++.++...|...|..++... .++++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 455667778889999999999865 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCC--CChH
Q 008345 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEE 396 (569)
Q Consensus 319 ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~--~~~~ 396 (569)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.+...+..++..++.++... |..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877654 3444
Q ss_pred HH
Q 008345 397 EV 398 (569)
Q Consensus 397 ~~ 398 (569)
++
T Consensus 164 ei 165 (212)
T 3eaq_A 164 EV 165 (212)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=217.74 Aligned_cols=161 Identities=30% Similarity=0.475 Sum_probs=131.3
Q ss_pred cccccCCCceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHH
Q 008345 231 VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (569)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~ 310 (569)
......+++.+.++.++..+|...|..++... .++.++||||+++..++.++..|...|+.+..+||+|++.+|..+++
T Consensus 12 ~~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~ 90 (185)
T 2jgn_A 12 FQGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALH 90 (185)
T ss_dssp ----CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHH
T ss_pred ccCCCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHH
Confidence 33445678999999999999999999999874 35789999999999999999999999999999999999999999999
Q ss_pred HHhcCCceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCcc
Q 008345 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (569)
Q Consensus 311 ~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~ 390 (569)
.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.+...+.+++..++....
T Consensus 91 ~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~ 170 (185)
T 2jgn_A 91 QFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 170 (185)
T ss_dssp HHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877765444
Q ss_pred CC
Q 008345 391 AA 392 (569)
Q Consensus 391 ~~ 392 (569)
..
T Consensus 171 ~~ 172 (185)
T 2jgn_A 171 EV 172 (185)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=2.2e-25 Score=224.91 Aligned_cols=160 Identities=27% Similarity=0.409 Sum_probs=142.7
Q ss_pred CceEEEEEcchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc
Q 008345 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317 (569)
Q Consensus 238 ~~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~ 317 (569)
.+.+.++.+....|...|..++... .++++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 3567888899999999999999876 47899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccCC--CCh
Q 008345 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSE 395 (569)
Q Consensus 318 ~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~~--~~~ 395 (569)
+|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.+..++..++..++.++... |..
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~ 159 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTP 159 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCH
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877544 444
Q ss_pred HHHH
Q 008345 396 EEVL 399 (569)
Q Consensus 396 ~~~~ 399 (569)
+++.
T Consensus 160 ~ei~ 163 (300)
T 3i32_A 160 EEVL 163 (300)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=2.1e-26 Score=213.78 Aligned_cols=152 Identities=34% Similarity=0.592 Sum_probs=138.9
Q ss_pred CceEEEEEcch-hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 008345 238 DLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (569)
Q Consensus 238 ~~~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~ 316 (569)
++.+.++.++. ..|...|..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 45667777777 78888888888753 5679999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEEEEEeccccHHHHHHHHHHhCCCccC
Q 008345 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (569)
Q Consensus 317 ~~ILV~Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~i~~v~~~e~~~~~~l~~~l~~~~~~ 391 (569)
.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++++.+.+..++..++.+++.++..
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 999999999999999999999999999999999999999999999999999999999988888888877766543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=207.49 Aligned_cols=168 Identities=21% Similarity=0.205 Sum_probs=123.5
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHH-HHHHHHHhc
Q 008345 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQ-TLKFTKELG 117 (569)
Q Consensus 40 ~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-~~~g~~~Lil~PtreLa~Q-~~~~~~~~~ 117 (569)
..+...|+|+|.++++.++.++++++.+|||+|||++|++++++.+.... ...+.++||++|+++|+.| +.+.++.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34555799999999999999999999999999999999999988765431 1235679999999999999 777888876
Q ss_pred ccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCC-----CCCCCeeEEEEeCCCccCCCChHHHHHH-
Q 008345 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----MSLKSVEYVVFDEADCLFGMGFAEQLHK- 191 (569)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~-----~~l~~l~~iViDEah~l~~~~f~~~l~~- 191 (569)
.. ++++..++|+......+..+..+++|+|+||++|.+.+..... +.+.++++||+||||++.+.++...+..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6888888888765554444455799999999999998876322 5578899999999999988766655533
Q ss_pred HHHhc-------------CCCCcEEEEEec
Q 008345 192 ILGQL-------------SENRQTLLFSAT 208 (569)
Q Consensus 192 i~~~~-------------~~~~q~ll~SAT 208 (569)
++... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 22221 157899999998
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=204.30 Aligned_cols=179 Identities=17% Similarity=0.216 Sum_probs=132.7
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 008345 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (569)
Q Consensus 34 ~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~ 113 (569)
+.+.....+...++++|.++++.+..|+++++.|+||||||+++.+++++.+.......+.++++++|+++|+.|+.+.+
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 33333344445589999999999999999999999999999999999988776543333558999999999999998766
Q ss_pred HH-hcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCcc-CCCChH-HHHH
Q 008345 114 KE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQLH 190 (569)
Q Consensus 114 ~~-~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l-~~~~f~-~~l~ 190 (569)
.. ++...+..+..-...... ....+++|+|+|||++++++.. .++++++||+||||++ ++++|. ..+.
T Consensus 130 ~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp HHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred HHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 54 343444444433322110 0114588999999999999875 3889999999999986 677776 4556
Q ss_pred HHHHhcCCCCcEEEEEecCChHHHHHHHhcCCCC
Q 008345 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224 (569)
Q Consensus 191 ~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~l~~~ 224 (569)
.++... ++.|+++||||++.+. +++.+.+.|
T Consensus 201 ~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 201 DVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 666555 4789999999999875 555554444
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.3e-22 Score=221.89 Aligned_cols=301 Identities=17% Similarity=0.219 Sum_probs=170.3
Q ss_pred CCCCCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 41 KGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~----il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 588 699999998654 4578999999999999999999998754 467999999999999999877664
Q ss_pred cccCCCeEEEEEcCCCH--------H------------------------HHHH---------------HHcCCCCEEEE
Q 008345 117 GRYTDLRISLLVGGDSM--------E------------------------SQFE---------------ELAQNPDIIIA 149 (569)
Q Consensus 117 ~~~~~l~~~~~~gg~~~--------~------------------------~~~~---------------~l~~~~~IiV~ 149 (569)
++++..+.|.... . ..+. .....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3455544432210 0 0000 11236799999
Q ss_pred CcHHHHHHHhhcCCC-------CCCCeeEEEEeCCCccCCCC-----------h---HH---------------------
Q 008345 150 TPGRLMHHLSEVEDM-------SLKSVEYVVFDEADCLFGMG-----------F---AE--------------------- 187 (569)
Q Consensus 150 Tp~rl~~~l~~~~~~-------~l~~l~~iViDEah~l~~~~-----------f---~~--------------------- 187 (569)
|+..|++..... .+ .+....++||||||.+.+.. + ..
T Consensus 151 n~~~l~~~~~~~-~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 151 TYPYLFQKPIRN-SVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp ETHHHHSHHHHH-HHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ChHHhcCHHHHH-hhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999998755431 11 24567899999999884210 0 00
Q ss_pred ------------------------------HHHHHHHh------------------------------------cCC---
Q 008345 188 ------------------------------QLHKILGQ------------------------------------LSE--- 198 (569)
Q Consensus 188 ------------------------------~l~~i~~~------------------------------------~~~--- 198 (569)
.+..++.. .|.
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 01111000 000
Q ss_pred ---------CCcEEEEEecCChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEE--cch--hh---HHHHHHHHHHHh
Q 008345 199 ---------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT--LRQ--EE---KHAALLYMIREH 262 (569)
Q Consensus 199 ---------~~q~ll~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~--~~~--~~---k~~~L~~ll~~~ 262 (569)
...+|++|||+++.+ .+.......+ .... .....+.. +++ +. ....+...|.+.
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~------~~~~~f~~~~--~~~~--g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~ 379 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL------TLTNSYKIVV--NESY--GRGEYYYCPNVTSELRKRNSNIPIYSILLKRI 379 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC------CCTTEEEEEC--CCC---CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc------ccchhcCCch--hhee--cCCcceeccccCCCcccccCHHHHHHHHHHHH
Confidence 011488888887620 0000000111 0000 01111111 110 11 113444444443
Q ss_pred c-CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEE--EeccccccCCCCC----C
Q 008345 263 I-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI--VTDVAARGIDIPL----L 335 (569)
Q Consensus 263 ~-~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV--~Tdv~arGlDip~----v 335 (569)
. ...+.+|||++|....+.+...|.. ....++|.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ +
T Consensus 380 ~~~~~g~~lvff~S~~~~~~v~~~l~~---~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~ 453 (540)
T 2vl7_A 380 YENSSKSVLVFFPSYEMLESVRIHLSG---IPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLF 453 (540)
T ss_dssp HHTCSSEEEEEESCHHHHHHHHTTCTT---SCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CE
T ss_pred HHhCCCCEEEEeCCHHHHHHHHHHhcc---CceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccc
Confidence 3 2457899999999999999887754 234556654 46788999999864 6777 8899999999997 8
Q ss_pred CEEEEcCCCCCh------------------------------hHHHHHhhccccCCCc-cEEEEEecc
Q 008345 336 DNVINWDFPPKP------------------------------KIFVHRVGRAARAGRT-GTAFSFVTS 372 (569)
Q Consensus 336 ~~VI~~d~p~s~------------------------------~~~~qrvGR~gR~g~~-G~~i~~v~~ 372 (569)
++||++++|... ..+.|.+||+-|...+ |. ++++.+
T Consensus 454 ~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 454 ESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp EEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred cEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 899999998421 1247999999997544 54 444444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=3.2e-21 Score=211.57 Aligned_cols=313 Identities=18% Similarity=0.140 Sum_probs=201.5
Q ss_pred CCCCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 42 GYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~----il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
|| .|+|+|.+.+.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 56 499999997764 4568999999999999999999999972 5689999999999999999999888
Q ss_pred ccCCCeEEEEEcCCCH---------------------------------HHHH------------------HHHcCCCCE
Q 008345 118 RYTDLRISLLVGGDSM---------------------------------ESQF------------------EELAQNPDI 146 (569)
Q Consensus 118 ~~~~l~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~~I 146 (569)
+..++++..+.|+.++ ...+ +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774321 1111 223457899
Q ss_pred EEECcHHHHHHHhhcCCCCC-CCeeEEEEeCCCccCCCC-----------------------------------------
Q 008345 147 IIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMG----------------------------------------- 184 (569)
Q Consensus 147 iV~Tp~rl~~~l~~~~~~~l-~~l~~iViDEah~l~~~~----------------------------------------- 184 (569)
||+|++.|++...+. .+.+ ....++||||||.+.+ .
T Consensus 152 VV~~~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 152 IALTYPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEETHHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEeCchHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999886542 2333 4678899999998764 1
Q ss_pred --------------hHHHHH----------------------------HHHH----------------------------
Q 008345 185 --------------FAEQLH----------------------------KILG---------------------------- 194 (569)
Q Consensus 185 --------------f~~~l~----------------------------~i~~---------------------------- 194 (569)
+...+. ..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 000000 0000
Q ss_pred hcCCC-CcEEEEEecCChHHHHHHHhcCCC-Ceee---eeccccccCCCceEEEEE--cch------hhHHHHHHHHHHH
Q 008345 195 QLSEN-RQTLLFSATLPSALAEFAKAGLRD-PHLV---RLDVDTKISPDLKLAFFT--LRQ------EEKHAALLYMIRE 261 (569)
Q Consensus 195 ~~~~~-~q~ll~SAT~~~~~~~~~~~~l~~-~~~i---~~~~~~~~~~~~~~~~~~--~~~------~~k~~~L~~ll~~ 261 (569)
.+... +.+|++|||+++ ...+.....-+ +... .+...... ..-...++. ++. ..-...+...+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01223 688999999987 44455443222 2211 22222222 111122221 111 1223445554444
Q ss_pred hcC-CCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe--ccccccCCCC-----
Q 008345 262 HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT--DVAARGIDIP----- 333 (569)
Q Consensus 262 ~~~-~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T--dv~arGlDip----- 333 (569)
... .++.++||++|....+.+.+ ..+..+..-..+++. ...++.|+.+.-.||++| ...++|||+|
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 322 45789999999999998886 234333332234453 446777864445899998 6899999999
Q ss_pred CCCEEEEcCCCCC--------------------hh----------HHHHHhhccccCCCccEEEEEeccc
Q 008345 334 LLDNVINWDFPPK--------------------PK----------IFVHRVGRAARAGRTGTAFSFVTSE 373 (569)
Q Consensus 334 ~v~~VI~~d~p~s--------------------~~----------~~~qrvGR~gR~g~~G~~i~~v~~~ 373 (569)
.+..||...+|.. .- .+.|.+||+-|...+--++.++++.
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 3778888777631 11 1368899999976553344445443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=3.6e-22 Score=200.59 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=127.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeE
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (569)
.|+|+|.++++.++.+++.++.++||||||.+++.++...+... +.++||++||++|+.|+.+.+++++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----CCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 79999999999999988899999999999999998887766532 34799999999999999999999987777788
Q ss_pred EEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
..++||..... ....+.+|+|+||+++.+... ..+.++++||+||||++.+ ..+..++..++..+++++
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 88888865432 123578999999998864321 3467899999999999874 477788888878899999
Q ss_pred EEecCChHH
Q 008345 205 FSATLPSAL 213 (569)
Q Consensus 205 ~SAT~~~~~ 213 (569)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999998653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=6.2e-19 Score=172.32 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCe-
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~- 123 (569)
.|+|+|.++++.++.++++++.++||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 6999999999999999999999999999999998776542 456999999999999988877764 567
Q ss_pred EEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEE
Q 008345 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
+..+.|+.. ...+|+|+||+.+....... ..++++|||||||++.+..|. .++..++ ..+++
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEE
Confidence 777777653 36899999999998776542 245899999999999887654 3444454 67899
Q ss_pred EEEecCChH
Q 008345 204 LFSATLPSA 212 (569)
Q Consensus 204 l~SAT~~~~ 212 (569)
++|||+++.
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999998754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.78 E-value=5e-18 Score=187.94 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=69.3
Q ss_pred CChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC
Q 008345 45 VPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (569)
Q Consensus 45 ~~t~iQ~~~i~----~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~ 120 (569)
.|+|.|++.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 48999998875 456799999999999999999999999887653 5689999999999999999999887766
Q ss_pred CCeEEEEEcC
Q 008345 121 DLRISLLVGG 130 (569)
Q Consensus 121 ~l~~~~~~gg 130 (569)
++++..+.|+
T Consensus 79 ~~~~~~l~gr 88 (620)
T 4a15_A 79 KIRAIPMQGR 88 (620)
T ss_dssp CCCEEECCCH
T ss_pred CeEEEEEECC
Confidence 7777776664
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=3.5e-18 Score=170.04 Aligned_cols=129 Identities=18% Similarity=0.313 Sum_probs=103.6
Q ss_pred cchhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcC-Cce-EEEE
Q 008345 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIV 322 (569)
Q Consensus 246 ~~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~-~~~~~~i~g~l~~~~R~~~l~~F~~g-~~~-ILV~ 322 (569)
.....|...|..+|......+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ .++ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567899999999887777899999999999999999999885 99999999999999999999999998 677 7889
Q ss_pred eccccccCCCCCCCEEEEcCCCCChhHHHHHhhccccCCCccEE--EEEecccc
Q 008345 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (569)
Q Consensus 323 Tdv~arGlDip~v~~VI~~d~p~s~~~~~qrvGR~gR~g~~G~~--i~~v~~~e 374 (569)
|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+ |.+++.+-
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999987654 66777653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.93 E-value=2.9e-09 Score=117.63 Aligned_cols=145 Identities=18% Similarity=0.194 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHH--HHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeE
Q 008345 47 TPIQRKTMPLILSGADVVAMARTGSGKT--AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (569)
Q Consensus 47 t~iQ~~~i~~il~g~dvl~~a~TGSGKT--~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~ 124 (569)
+++|+.+++.++.++++++.|++||||| ++++++.+..+.. ..+.++++++||.++|.++.+.+.......++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 7999999999999999999999999999 6677777766532 2366899999999999999887776554433321
Q ss_pred EEEEcCCCHHHHHHHHcCCCC-EEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEE
Q 008345 125 SLLVGGDSMESQFEELAQNPD-IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (569)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~-IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~l 203 (569)
... .+... . ....+ ++-.+|+.. . +...... ...++++|+|||+. ++ ...+..++..++..+|++
T Consensus 228 ~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~~~-~l~~d~lIIDEAsm-l~---~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 228 EQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHAGN-PLHLDVLVVDEASM-ID---LPMMSRLIDALPDHARVI 293 (608)
T ss_dssp CCC-CSCSC--C----CBTTTSCC-------------CTTS-CCSCSEEEECSGGG-CB---HHHHHHHHHTCCTTCEEE
T ss_pred HHH-hccch--h----hhhhHhhhccCCCch-H-HHhccCC-CCCCCEEEEechhh-CC---HHHHHHHHHhCCCCCEEE
Confidence 100 00000 0 00011 111223221 0 1111112 22789999999994 43 466788899999999999
Q ss_pred EEEec
Q 008345 204 LFSAT 208 (569)
Q Consensus 204 l~SAT 208 (569)
++.=.
T Consensus 294 LvGD~ 298 (608)
T 1w36_D 294 FLGDR 298 (608)
T ss_dssp EEECT
T ss_pred EEcch
Confidence 88754
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.13 E-value=0.0002 Score=79.41 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
..+++.|++++.. .+..+++.|+.|||||.+.+--+...+.... .+..++|++++|+..+.++.+.+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999972 3567999999999999876655544443322 22357999999999999999887765
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.09 E-value=1.7e-05 Score=84.42 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=80.4
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC----C-cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 008345 38 IKRKGYKVPTPIQRKTMPLILSG----A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (569)
Q Consensus 38 l~~~g~~~~t~iQ~~~i~~il~g----~-dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~ 112 (569)
..-+.|..|++-|++++..++.. . .+++.|+.|||||.+. ..++..+... ....+++++||...|..+.+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHhh
Confidence 34468899999999999877542 3 7999999999999754 3444455442 123699999999887765543
Q ss_pred HHHhcccCCCeEEEEEcCCCHHHHHHHHc---CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHH
Q 008345 113 TKELGRYTDLRISLLVGGDSMESQFEELA---QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (569)
Q Consensus 113 ~~~~~~~~~l~~~~~~gg~~~~~~~~~l~---~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l 189 (569)
+ +..+..++ ....... .....+.. .....+...++||+||++.+. ...+
T Consensus 94 ~-------~~~~~T~h------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~iiiDE~~~~~----~~~~ 145 (459)
T 3upu_A 94 S-------GKEASTIH------SILKINPVTYEENVLFEQ-----------KEVPDLAKCRVLICDEVSMYD----RKLF 145 (459)
T ss_dssp H-------SSCEEEHH------HHHTEEEEECSSCEEEEE-----------CSCCCCSSCSEEEESCGGGCC----HHHH
T ss_pred h-------ccchhhHH------HHhccCcccccccchhcc-----------cccccccCCCEEEEECchhCC----HHHH
Confidence 3 11111111 0000000 00000000 112345678999999999754 3455
Q ss_pred HHHHHhcCCCCcEEEEE
Q 008345 190 HKILGQLSENRQTLLFS 206 (569)
Q Consensus 190 ~~i~~~~~~~~q~ll~S 206 (569)
..++..++...+++++.
T Consensus 146 ~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 146 KILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHSCTTCEEEEEE
T ss_pred HHHHHhccCCCEEEEEC
Confidence 66666676566655554
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=9.4e-06 Score=88.73 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCC
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~ 121 (569)
++. +++.|+.++..++.++.+++.|+.|+|||.+.. .++..+.. .|.++++++||...+..+.+.+.
T Consensus 187 ~~~-L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES----LGLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TTT-CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH----TTCCEEEEESSHHHHHHHHHHHT-------
T ss_pred cCC-CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh----cCCeEEEecCcHHHHHHhHhhhc-------
Confidence 544 899999999999999999999999999997533 33444433 36789999999998877654321
Q ss_pred CeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHH----HhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcC
Q 008345 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHH----LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (569)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~----l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~ 197 (569)
... .|-.+++.. ... ........++||+||++.+. ...+..++..++
T Consensus 254 ~~a------------------------~Tih~ll~~~~~~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 RTA------------------------STVHRLLGYGPQGFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp SCE------------------------EEHHHHTTEETTEESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred ccH------------------------HHHHHHHcCCcchhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 111 111111100 000 11223467899999999864 346677788888
Q ss_pred CCCcEEEEEe
Q 008345 198 ENRQTLLFSA 207 (569)
Q Consensus 198 ~~~q~ll~SA 207 (569)
...+++++.=
T Consensus 305 ~~~~lilvGD 314 (574)
T 3e1s_A 305 PGARVLLVGD 314 (574)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEec
Confidence 7777776543
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=3.2e-05 Score=87.69 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
+..+++.|.+|+..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||..-+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4568999999999998877789999999999986543 33333332 3567999999999999988877764
No 99
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.00 E-value=1.5e-05 Score=88.71 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~d-vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
.+++-|.+|+..++..++ .+++||+|||||.+..-.+. .+.. .|.++|+++||..=+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~-~l~~----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIIL-QAVK----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHH-HHHH----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHH-HHHh----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 579999999999988765 78999999999987554443 3333 3678999999999888887776554
No 100
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.97 E-value=3.2e-05 Score=85.62 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
+..+++.|.+++..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||..-+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 456899999999999888789999999999998654 333444332 3568999999999999988776654
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.87 E-value=0.00011 Score=83.38 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.2
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 43 ~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
...+++.|.+++..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||..-+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 446899999999999888788999999999998644 344444432 3568999999999999888776653
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.37 E-value=0.0014 Score=65.48 Aligned_cols=126 Identities=12% Similarity=0.066 Sum_probs=93.8
Q ss_pred chhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 247 ~~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
....|...|-++|......+.+++||+......+.+..+|...++....+.|.....+++ -.+..+.+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCC
Confidence 356788888888888888889999999999999999999999999999999985543221 124566666667766
Q ss_pred cccCC-----CCCCCEEEEcCCCCChhH-HHHHhhccccCC----CccEEEEEeccccHHH
Q 008345 327 ARGID-----IPLLDNVINWDFPPKPKI-FVHRVGRAARAG----RTGTAFSFVTSEDMAY 377 (569)
Q Consensus 327 arGlD-----ip~v~~VI~~d~p~s~~~-~~qrvGR~gR~g----~~G~~i~~v~~~e~~~ 377 (569)
.-|+| +...+.||.||.-+++.. .+|.+-|+.|.| +.-.+|-+++..-+.+
T Consensus 181 ~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 181 INFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 66676 567899999999999887 499998888873 3456788888875543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.29 E-value=0.0028 Score=65.34 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcc
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~ 118 (569)
.|+|+|+..+..+...+-+++..+-+.|||.+....++..+.. ..|..+++++||++.|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5899999999876555678999999999999877666554443 2467899999999999888877666543
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.00 E-value=0.0065 Score=66.57 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~ 119 (569)
.|+|+|+..+..+-..+-+++.++-|+|||.+....++..+... ++..+++++|+++.|..+...++.+...
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 48999999998775567799999999999987765555555443 4668999999999999988877776543
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.75 E-value=0.0028 Score=57.81 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHH
Q 008345 47 TPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 47 t~iQ~~~i~~il---------~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.|.+++..+. .|+.+++.||+|+|||...-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665443 36789999999999998543
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.62 E-value=0.0032 Score=58.01 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
.|+-.++.|++|+|||...+-- +.++.. .|.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~-~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSF-VEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH-HHHHHH----TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHH-HHHHHH----CCCeEEEEeecc
Confidence 3556789999999999876522 223322 356799998874
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.58 E-value=0.0043 Score=64.82 Aligned_cols=106 Identities=17% Similarity=0.160 Sum_probs=62.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcC
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~ 142 (569)
.++.|+.|+|||..+. .+... .+.+|++||++++..+.+.+...+ . ..
T Consensus 164 ~~I~G~aGsGKTt~I~-----~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~~ 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-----SRVNF-----EEDLILVPGRQAAEMIRRRANASG----I------------------IV 211 (446)
T ss_dssp EEEEECTTSCHHHHHH-----HHCCT-----TTCEEEESCHHHHHHHHHHHTTTS----C------------------CC
T ss_pred EEEEcCCCCCHHHHHH-----HHhcc-----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------cc
Confidence 6789999999998654 32221 246999999999988776554321 0 00
Q ss_pred CCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 143 ~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
....-|.|-++++- +......-..+++|||||-. .+.++ +..++...+. .+++++.=+
T Consensus 212 ~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm-~~~~~---l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLM-LHTGC---VNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGG-SCHHH---HHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhc---CCCCCCCCcCCEEEEeCccc-CCHHH---HHHHHHhCCC-CEEEEecCc
Confidence 11233777766552 11112223478999999974 44433 3334444443 556665544
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.40 E-value=0.0016 Score=57.92 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=25.1
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCC-CcEEEEEecC
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSATL 209 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~-~q~ll~SAT~ 209 (569)
+.+++|+||.+.+.... ...+..++..+... ..++++|+..
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46789999999865433 55566666554433 4425555553
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.39 E-value=0.0012 Score=62.80 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
|.-+++.|++|+|||.+.+-- +.++.. .|.+++++.|...-- -...+....|+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~----~g~kVli~~~~~d~r-----~~~~i~srlG~~---------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY----ADVKYLVFKPKIDTR-----SIRNIQSRTGTS---------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH----TTCCEEEEEECCCGG-----GCSSCCCCCCCS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh----cCCEEEEEEeccCch-----HHHHHHHhcCCC----------------
Confidence 455888999999999875533 333333 366789988754210 000111111211
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
...+-+.+...+++.+.. ...-..+++|||||++-+.
T Consensus 66 ---~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ---LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ---SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSC
T ss_pred ---ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCc
Confidence 012335666677776664 2333458999999999754
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.25 E-value=0.0023 Score=59.33 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
|+=.++.|++|||||.+.+ -++.++.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH----CCCEEEEEEecc
Confidence 4557889999999998765 33333332 477899999874
No 111
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.014 Score=60.97 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=70.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
-+++.|++|+|||......+. .+.. .|.+++++. +.|.-+. +.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC-------
Confidence 377889999999986543222 2222 355666655 3343222 2344444444554332222211
Q ss_pred HcCCCCEEEECcHHHH-HHHhhcCCCCCCCeeEEEEeCCCccC---CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHH
Q 008345 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF---GMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~-~~l~~~~~~~l~~l~~iViDEah~l~---~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~ 215 (569)
|..+. +.+.. +...+.+++|+|++-++. +..+..++..+.....+..-+++++|+.......
T Consensus 164 -----------p~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 164 -----------PIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp -----------HHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred -----------HHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 22221 22222 333578899999998754 4446677777777776666677788876444333
Q ss_pred HH
Q 008345 216 FA 217 (569)
Q Consensus 216 ~~ 217 (569)
.+
T Consensus 230 ~a 231 (433)
T 3kl4_A 230 LA 231 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.01 E-value=0.0082 Score=66.85 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhccc---CC
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY---TD 121 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~---~~ 121 (569)
.++|-|++++.. .+..+++.|..|||||.+.+--+...+..... ...++|+|+.|+..|.++.+.+...... .+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 489999999975 36779999999999998766555544443221 2357999999999999999887765322 23
Q ss_pred CeEEEE
Q 008345 122 LRISLL 127 (569)
Q Consensus 122 l~~~~~ 127 (569)
+.+..+
T Consensus 79 ~~v~Tf 84 (673)
T 1uaa_A 79 LMISTF 84 (673)
T ss_dssp SEEEEH
T ss_pred CEEEeH
Confidence 555544
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.1 Score=52.11 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhh
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~ 87 (569)
+..+++.||+|+|||++.- .++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4679999999999998644 33444443
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.84 E-value=0.018 Score=57.80 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997543
No 115
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.77 E-value=0.034 Score=51.36 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.|++|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998543
No 116
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.76 E-value=0.0039 Score=58.59 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
|+=.++.|+.|||||.+.+--+. +... .|.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~-r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR-RTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHH----CCCEEEEEEeccC
Confidence 34467899999999987653333 3332 4778999999754
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.60 E-value=0.022 Score=63.94 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 008345 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (569)
Q Consensus 44 ~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~ 116 (569)
..++|-|++++.. ....+++.|..|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4699999999975 3567999999999999976655554444321 12357999999999999988877664
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.55 E-value=0.032 Score=48.82 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~l 78 (569)
..+.++++.|++|+|||...-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 356789999999999998654
No 119
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.44 E-value=0.019 Score=68.26 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~-~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
.+|+-|.++|.. .++++++.|..|||||.+.+--++..+.... .....++|++++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 489999999975 3789999999999999987766666665432 11345799999999999998887665
No 120
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.25 E-value=0.078 Score=55.68 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=25.3
Q ss_pred CeeEEEEeCCCccCCC-ChHHHHHHHHHhcC-CCCcEEEEEec
Q 008345 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSAT 208 (569)
Q Consensus 168 ~l~~iViDEah~l~~~-~f~~~l~~i~~~~~-~~~q~ll~SAT 208 (569)
+.++++|||+|.+... .....+..++..+. .+.++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4578999999998864 33445555555443 34555554433
No 121
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.22 E-value=0.083 Score=51.33 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.||+|+|||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998654
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.12 E-value=0.05 Score=56.91 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=67.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
-+++.|++|+|||....-.+ ..+.. .|.+++++. |.|.-+ .+.++.++...++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~----~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK----RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC-------
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH----CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC-------
Confidence 37789999999998655222 22222 356676665 444433 23455555555665433222221
Q ss_pred HcCCCCEEEECcHHHH-HHHhhcCCCCCCCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH
Q 008345 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~-~~l~~~~~~~l~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (569)
|..+. +.+.. +....+++||+|.+=++... .....+..+.....+..-++.++||........+
T Consensus 167 -----------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 167 -----------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp -----------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred -----------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 21111 11211 11234788999998665422 2445555555555555557777887654444443
Q ss_pred H
Q 008345 218 K 218 (569)
Q Consensus 218 ~ 218 (569)
+
T Consensus 233 ~ 233 (443)
T 3dm5_A 233 L 233 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.10 E-value=0.02 Score=54.37 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
|+=.++.|+.|||||.+.+--+. +... .|.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~-r~~~----~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVR-RFQI----AQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-HHHT----TTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHH-HHHH----CCCeEEEEeecC
Confidence 56678899999999987663333 3222 477899998864
No 124
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.07 E-value=0.04 Score=55.60 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHH
Q 008345 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 46 ~t~iQ~~~i~~il----~g~---dvl~~a~TGSGKT~a~l 78 (569)
+.|+|.+++..+. .|+ -+++.||.|+|||.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888776554 343 38999999999998655
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.07 E-value=0.078 Score=52.92 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=25.8
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
...+++|||+|.+........+..++...+...++++.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 67899999999986223455566666666556655553
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.89 E-value=0.039 Score=56.25 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=19.7
Q ss_pred CeeEEEEeCCCccCCCC-hHHHHHHHHHhc
Q 008345 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQL 196 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~-f~~~l~~i~~~~ 196 (569)
...+|||||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 45689999999987542 345555666544
No 127
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.68 E-value=0.072 Score=59.97 Aligned_cols=92 Identities=16% Similarity=0.070 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
..|....+..+...+..+.+++|.++|+.-+..+.+.+.. .++.+..+||+++...+...+....+|+.+|+|+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3455444333333344578999999999888777766654 478999999999999999999999999999999995
Q ss_pred -cccccCCCCCCCEEEE
Q 008345 325 -VAARGIDIPLLDNVIN 340 (569)
Q Consensus 325 -v~arGlDip~v~~VI~ 340 (569)
.+...+++.++.+||.
T Consensus 480 ~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVII 496 (780)
T ss_dssp THHHHCCCCSCCCEEEE
T ss_pred HHHhhhhhccCCceEEe
Confidence 3445678888998884
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.66 E-value=0.051 Score=48.84 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 129
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.61 E-value=0.076 Score=46.25 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~ 77 (569)
...+.++++.|++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999754
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.56 E-value=0.22 Score=45.84 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=25.3
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997642 3455666666655555444443
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.54 E-value=0.2 Score=51.04 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998543
No 132
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.45 E-value=0.047 Score=51.42 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.||+|+|||....
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5779999999999998543
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.35 E-value=1.2 Score=39.52 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.|++|+|||....
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999998543
No 134
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.24 E-value=0.013 Score=54.99 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 139 (569)
|.=.++.|+.|||||...+-- +.+... .|.+++|+.|...--. --..+....|+..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~----~g~kvli~kp~~D~R~----~~~~I~Sr~G~~~--------------- 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY----AKQKVVVFKPAIDDRY----HKEKVVSHNGNAI--------------- 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH----TTCCEEEEEEC---------------CBTTBCC---------------
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH----cCCceEEEEeccCCcc----hhhhHHHhcCCce---------------
Confidence 455789999999999765433 344433 3667999999654110 0011222222211
Q ss_pred HcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHH
Q 008345 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (569)
Q Consensus 140 l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~ 193 (569)
..+.|..+..++..+ ..++++|+||||+-+.+ ...+++..+.
T Consensus 84 ----~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~~-~~v~~l~~la 125 (219)
T 3e2i_A 84 ----EAINISKASEIMTHD-------LTNVDVIGIDEVQFFDD-EIVSIVEKLS 125 (219)
T ss_dssp ----EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSCT-HHHHHHHHHH
T ss_pred ----eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCCH-HHHHHHHHHH
Confidence 223444444333221 24678999999987554 3556666655
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.17 E-value=0.12 Score=50.27 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--hcCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLI--LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ-~~~i~~i--l~g~dvl~~a~TGSGKT~a~l 78 (569)
...-+|++++-.+...+.|.+.=- .+.+ .+.+... ...+.+++.||+|+|||...-
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 345678998877777777754210 1111 1122221 235679999999999998543
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.1 Score=52.61 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=28.7
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.+.+++|+||+|. ++......+..++...+.+..+++.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999999 44445667777777776665555555443
No 137
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.036 Score=56.58 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||....
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.07 E-value=0.076 Score=52.50 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.||+|+|||.+.-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.98 E-value=0.31 Score=49.29 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.|++|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998543
No 140
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.85 E-value=0.055 Score=49.92 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|+=.++.|++|||||.-.+ -.+..... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll-~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELM-RRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHHHHHHH----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHH-HHHHHHHH----cCCeEEEEccc
Confidence 5668899999999996544 33333322 35779999886
No 141
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.58 E-value=0.1 Score=57.27 Aligned_cols=112 Identities=23% Similarity=0.374 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCC
Q 008345 45 VPTPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (569)
Q Consensus 45 ~~t~iQ~~~i~~il~--g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l 122 (569)
.+|+-|.+++..++. ..-.++.|+-|.|||++..+.+ ..+.. .++|.+|+.+=+..+.+....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-------~~~vtAP~~~a~~~l~~~~~~------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-------RAIVTAPAKASTDVLAQFAGE------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-------CEEEECSSCCSCHHHHHHHGG-------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-------CcEEECCCHHHHHHHHHHhhC-------
Confidence 689999999998876 3347899999999997654333 23321 269999998755433332211
Q ss_pred eEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcE
Q 008345 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (569)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ 202 (569)
.|-+..|..+.. .....+++|||||=.+. ...+..++.. -..
T Consensus 240 ----------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll~~----~~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLVSR----FPR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHHTT----SSE
T ss_pred ----------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHHhh----CCe
Confidence 022345655431 13358899999997644 3344444442 335
Q ss_pred EEEEecC
Q 008345 203 LLFSATL 209 (569)
Q Consensus 203 ll~SAT~ 209 (569)
++||.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 8888887
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.51 E-value=0.055 Score=53.96 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.028 Score=58.74 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
+..-+|++.|--+...+.|.+. .+..|--++...++ ..+.+++.||+|+|||+..
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 4556899998888888887642 22233333322221 2467999999999999854
No 144
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.25 E-value=0.31 Score=50.29 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 008345 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (569)
Q Consensus 250 ~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~ 326 (569)
.|....+-.+......+.++||.++|+.-+..+.+.+.. .++.+..++|+.+..++...+..+..+..+|+|+|+-.
T Consensus 48 GKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 48 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 127 (414)
T ss_dssp SHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHH
Confidence 344433333333335678999999999999999999988 58899999999999988888899999999999999432
Q ss_pred c----ccCCCCCCCEEEE
Q 008345 327 A----RGIDIPLLDNVIN 340 (569)
Q Consensus 327 a----rGlDip~v~~VI~ 340 (569)
- .-++...+++||.
T Consensus 128 l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 128 VSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp HHHCHHHHTTCCCSEEEE
T ss_pred HHHHHHHhccccccEEEE
Confidence 2 1255567888774
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.97 E-value=0.29 Score=48.94 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHH
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~l 78 (569)
+|+++--.+...+.+.. .+.... ....+++.|++|+|||...-
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 67777655665555531 122221 12579999999999998544
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.80 E-value=1 Score=46.25 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
...-+|++.|=-+...+.|.+. .+..|--++.-.+ -..+.+++.||+|+|||+..-
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHH
Confidence 3456788887556666666542 1222222222111 124779999999999998543
No 147
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.61 E-value=0.21 Score=49.80 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il-----~g~dvl~~a~TGSGKT~a~l 78 (569)
...-+|++++-...+.+.|.+.= ..|.. .|.+. ..+.+++.||+|+|||...-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i---~~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAV---ILPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHT---HHHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHH---HHHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34557888887777777776421 01111 11111 13569999999999998543
No 148
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.52 E-value=0.37 Score=49.44 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
.+.+++.|++|+|||.+.-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998544
No 149
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.35 E-value=0.25 Score=51.85 Aligned_cols=39 Identities=31% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|+|||...+--+...... .|.++++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 3558899999999997554333332222 25568888753
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.34 E-value=0.32 Score=51.16 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|+|||...+--+...... .|..+++++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4568999999999997555333322222 25568888753
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.27 E-value=0.82 Score=42.34 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|++|+|||...-
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999997543
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.13 E-value=0.18 Score=49.55 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-hcCCcEEEEcCCCchHHHHHH
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI-LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~-~~i~~i-l~g~dvl~~a~TGSGKT~a~l 78 (569)
..+|+++.=.+...+.|.+.=. .|... +.+..+ ..++.+++.||+|+|||...-
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4578888767777766653210 00000 000001 125679999999999998543
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.10 E-value=0.4 Score=47.33 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+||+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999998642 3445666666655555544433
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.05 E-value=0.5 Score=46.56 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHH--HhcCCcEEEEcCCCchHHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~-~~i~~--il~g~dvl~~a~TGSGKT~a~l 78 (569)
..-+|++++-.+.+.+.|.+.- -+|... +.+.. +..++.+++.||+|+|||...-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 3457888876677776665420 011110 01111 1235679999999999998543
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.03 E-value=0.33 Score=48.55 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCchHHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il-----~g~dvl~~a~TGSGKT~a~l 78 (569)
..-+|++++=.+.+.+.|.+.= -.|.+ .|.+. ..+.+++.||+|+|||...-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3457888877777777775310 01111 01111 13679999999999998543
No 156
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.98 E-value=0.14 Score=51.38 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=25.6
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
....+|++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 45689999999997643 3455666666665555555543
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.94 E-value=1.1 Score=42.70 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 23 GGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g--~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
-+|+++.-.+.+.+.+.+.- +..+..+.... +...+.+++.||+|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 46777766666666665320 11111111100 1224679999999999997543
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.85 E-value=0.44 Score=43.86 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=73.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHhcccCCCeEEEEEcCCC-----HH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDS-----ME 134 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre-La~Q~~~~~~~~~~~~~l~~~~~~gg~~-----~~ 134 (569)
-.+++...+|.|||.+++-.++..+. .|.+++|+--... ....-.+.+..+ ++.+...--|-. .+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g-----~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG-----HGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH-----TTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcH
Confidence 46899999999999988866665543 3778888832110 000001122233 122211111100 01
Q ss_pred HHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccCCCC--hHHHHHHHHHhcCCCCcEEEEEecCChH
Q 008345 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSATLPSA 212 (569)
Q Consensus 135 ~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~~~~--f~~~l~~i~~~~~~~~q~ll~SAT~~~~ 212 (569)
...... -..+ ....+ .+.-..+++||+||.--....+ -.+.+.+++...|...-+|+.+--.|++
T Consensus 100 ~~~~~a----------~~~l-~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 100 ADTAAC----------MAVW-QHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp HHHHHH----------HHHH-HHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred HHHHHH----------HHHH-HHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 010000 1122 22222 1333578999999997544333 2456777788878777777777778888
Q ss_pred HHHHHH
Q 008345 213 LAEFAK 218 (569)
Q Consensus 213 ~~~~~~ 218 (569)
+.+.+.
T Consensus 167 l~e~AD 172 (196)
T 1g5t_A 167 ILDLAD 172 (196)
T ss_dssp HHHHCS
T ss_pred HHHhCc
Confidence 777664
No 159
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.81 E-value=0.58 Score=49.54 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=55.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCC-------
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD------- 131 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~------- 131 (569)
.+....+.|-||||||++.. .+... .+..+|||+|+...|.|++..++.|... .+. ++...
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~-~fp~~e~lpyd~ 80 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQ---MVM-NLADWETLPYDS 80 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCSS---CEE-ECCCCCSCTTCS
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEE-EEeCcccccccc
Confidence 35668999999999998543 22222 1335899999999999999999987532 222 22221
Q ss_pred -C--HH---HH----HHHHcCCCCEEEECcHHHHH
Q 008345 132 -S--ME---SQ----FEELAQNPDIIIATPGRLMH 156 (569)
Q Consensus 132 -~--~~---~~----~~~l~~~~~IiV~Tp~rl~~ 156 (569)
+ .+ .. .........|||+|...++.
T Consensus 81 ~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp SCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 1 11 11 12223467799999888874
No 160
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.14 Score=53.39 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
+..-+|++.|=-+...+.|.+. .+..|--++...+ -..+.+++.||+|+|||+..-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHH
Confidence 4456788887666666666532 1122222211111 123679999999999998543
No 161
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.59 E-value=0.9 Score=41.50 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=54.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCccc
Confidence 346999999999999998888775 57889999998776544333 35789999992 233 3578888
Q ss_pred eeEEEEe
Q 008345 169 VEYVVFD 175 (569)
Q Consensus 169 l~~iViD 175 (569)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888763
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.57 E-value=0.36 Score=47.89 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
...+++||||+|.|.... ...+...++.-|+...+++.
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 467899999999986433 33455555554444433433
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.35 E-value=0.19 Score=52.72 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..++++||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 469999999999998543
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.33 E-value=0.42 Score=48.48 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998544
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.21 E-value=0.17 Score=53.00 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
+..-+|++.|=-+...+.|.+. .+..|--++.-. +-..+.+++.||+|+|||+..
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 3456899998777777777642 111221111111 112477999999999999854
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.08 E-value=0.16 Score=52.93 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
+..-+|++.|=-+...+.|.+. .+..|--++...+ -..+.+++.||+|+|||...-
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHH
Confidence 4456788887656666666431 1112221221111 124679999999999998543
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.93 E-value=0.82 Score=46.74 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.3
Q ss_pred CcEEE--EcCCCchHHHHHH
Q 008345 61 ADVVA--MARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~--~a~TGSGKT~a~l 78 (569)
..+++ .|++|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35778 8999999998543
No 168
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.82 E-value=0.22 Score=47.12 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=29.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~ 114 (569)
.|.-+++.|++|+|||...+--+...+ . .+.+++++.-... ..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~-~----~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL-K----MGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH-H----TTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-h----cCCeEEEEEccCC-HHHHHHHHH
Confidence 356789999999999986443332222 2 2445777764322 344444444
No 169
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.60 E-value=0.2 Score=51.88 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 20 ~~~~~f~~l~l~~~~~~~l~~~---g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
...-+|++.|=-+...+.|.+. .+..|--++...+ -..+.+++.||+|+|||+..-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 3456888887545555556431 2223333322221 124679999999999998543
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.58 E-value=0.27 Score=48.48 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=24.3
Q ss_pred CeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEE
Q 008345 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (569)
Q Consensus 168 ~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~S 206 (569)
...+|||||+|.+... ....+...+...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 4789999999997643 2344555666655555555544
No 171
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.48 E-value=0.78 Score=40.54 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhc
Confidence 456999999999999988888775 57899999998766544332 34678999993 232 3578888
Q ss_pred eeEEEEeC
Q 008345 169 VEYVVFDE 176 (569)
Q Consensus 169 l~~iViDE 176 (569)
+++||.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888643
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.32 E-value=1.7 Score=43.71 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999998544
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.14 E-value=0.6 Score=49.88 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=27.4
Q ss_pred CCeeEEEEeCCCccCCC--ChHHHHHHHHHhcCCCCcEEEEEecC
Q 008345 167 KSVEYVVFDEADCLFGM--GFAEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~--~f~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
....+|||||+|.+... +....+..++... ...+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34578999999998753 3445566666552 45577777764
No 174
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.04 E-value=0.72 Score=54.35 Aligned_cols=91 Identities=13% Similarity=0.042 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT- 323 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T- 323 (569)
..|....+..+......+.+++|.|+|..-+..+.+.+.. .++.+..++|..+...+...+.....|..+|+|+|
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4455444333333344678999999999988888777764 36778899999999999999999999999999999
Q ss_pred ccccccCCCCCCCEEE
Q 008345 324 DVAARGIDIPLLDNVI 339 (569)
Q Consensus 324 dv~arGlDip~v~~VI 339 (569)
+.+...+.+.++.+||
T Consensus 715 ~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp HHHHSCCCCSSEEEEE
T ss_pred HHHhCCccccccceEE
Confidence 5666678888888877
No 175
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.77 E-value=0.51 Score=49.44 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999998543
No 176
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.68 E-value=1.3 Score=41.02 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.|.-+++.|++|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 35668899999999997544
No 177
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.62 E-value=0.78 Score=53.75 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~---~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (569)
..|....+-.+......+.++||.++|+.-+..+.+.+.. .++.+..+||+++..+|...+..+.+|..+|+|+|.-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3455444444444446678999999999999999999988 5678999999999988888889999999999999942
Q ss_pred cc-c---cCCCCCCCEEEE
Q 008345 326 AA-R---GIDIPLLDNVIN 340 (569)
Q Consensus 326 ~a-r---GlDip~v~~VI~ 340 (569)
.- + -+++.++++||.
T Consensus 184 rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHhhcccCcCEEEE
Confidence 11 1 145667888874
No 178
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.57 E-value=1.3 Score=39.53 Aligned_cols=72 Identities=22% Similarity=0.155 Sum_probs=54.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++..+..+...+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCccc
Confidence 457999999999999988877764 57899999998876554333 34789999993 222 3578888
Q ss_pred eeEEEEe
Q 008345 169 VEYVVFD 175 (569)
Q Consensus 169 l~~iViD 175 (569)
+.+||.-
T Consensus 103 ~~~Vi~~ 109 (175)
T 2rb4_A 103 VTIVVNF 109 (175)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9988853
No 179
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.27 E-value=0.66 Score=42.03 Aligned_cols=59 Identities=8% Similarity=0.139 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHH
Q 008345 46 PTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~--dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q 108 (569)
..+-|..++..++..+ -.++.++-|++||...+.-++..... .|.++.+|+|+..-+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHH
Confidence 4577899998887643 47789999999998865444433332 58899999999876554
No 180
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.71 E-value=1.3 Score=39.00 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.+++++-+..+...+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 457999999999999988888764 57889999998766544332 35788999993 232 3577888
Q ss_pred eeEEEEeC
Q 008345 169 VEYVVFDE 176 (569)
Q Consensus 169 l~~iViDE 176 (569)
+.+||.-+
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887744
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.70 E-value=1.7 Score=43.68 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=24.0
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
.....+|||||+|.+... ....+...+...+.... ++++++
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~-~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVK-FLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEE-EEEEES
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceE-EEEEeC
Confidence 345679999999997643 23445555555444433 333433
No 182
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.63 E-value=0.73 Score=48.90 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=28.7
Q ss_pred eeEEEEeCCCccCCCC----------hHHHHHHHHHhcCCCCcEEEEEecCCh
Q 008345 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLPS 211 (569)
Q Consensus 169 l~~iViDEah~l~~~~----------f~~~l~~i~~~~~~~~q~ll~SAT~~~ 211 (569)
..+|+|||+|.+.... ....+...+........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999887421 234455556666666677888888443
No 183
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.58 E-value=1.1 Score=44.04 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++-+++.|++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999998654
No 184
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.12 E-value=1 Score=44.37 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=27.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHH
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il----~g~dvl~~a~TGSGKT~a~l 78 (569)
.+|+++--.+...+.+.. ++..+. ....+++.|++|+|||...-
T Consensus 9 ~~~~~~ig~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRV------------YLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CSTTTCCSCHHHHHHHHH------------HHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred ccHHHhhCHHHHHHHHHH------------HHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 367777555555555532 111111 23679999999999998543
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.12 E-value=1.2 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEE
Q 008345 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~ 205 (569)
....++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 35789999999997642 345566666666655555444
No 186
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.03 E-value=1.3 Score=41.02 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.+|++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 457999999999999988888775 57899999998876654433 35688999993 333 3578888
Q ss_pred eeEEEE
Q 008345 169 VEYVVF 174 (569)
Q Consensus 169 l~~iVi 174 (569)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 988874
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.89 E-value=2 Score=42.79 Aligned_cols=57 Identities=14% Similarity=0.002 Sum_probs=30.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhc-CCCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDL-ALQTLKFTKEL 116 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~-~~~~g~~~Lil~PtreL-a~Q~~~~~~~~ 116 (569)
|.-+++.|++|+|||...+-.+....... ....+.+++++.-...+ ..++...++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999986553332211110 00114568888754322 23444444444
No 188
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.73 E-value=0.48 Score=50.05 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRK--GYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~--g~~~~t~iQ~~~i~~il--~g~dvl~~a~TGSGKT~a~l 78 (569)
..-+|+++.=.+...+.+.+. -+..|. .+..+- -.+.+++.||+|+|||...-
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHHH
Confidence 455899987667766666532 111111 111110 12569999999999998543
No 189
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.59 E-value=3.5 Score=38.38 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFLV 79 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~li 79 (569)
|.-+++.|++|+|||.....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 56689999999999986553
No 190
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.15 E-value=1.9 Score=38.94 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=52.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHH----HcCCC
Q 008345 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE----LAQNP 144 (569)
Q Consensus 69 TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~----l~~~~ 144 (569)
..+.|... +.-++.. . ..+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+.... ..+..
T Consensus 28 ~~~~K~~~-L~~ll~~----~-~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNA----T-GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp CGGGHHHH-HHHHHHH----C--CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSS
T ss_pred CcHHHHHH-HHHHHHh----c-CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 35677653 3333332 1 13567999999999999988888764 5788899998765443222 23578
Q ss_pred CEEEECcHHHHHHHhhcCCCCCCCeeEEEE
Q 008345 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (569)
Q Consensus 145 ~IiV~Tp~rl~~~l~~~~~~~l~~l~~iVi 174 (569)
.|+|+|.- +. ..+++.++.+||.
T Consensus 98 ~vLvaT~~-----~~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 98 PILVATAV-----AA--RGLDISNVKHVIN 120 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEE
T ss_pred eEEEEcCh-----hh--cCCCcccCCEEEE
Confidence 89999932 22 2577888888776
No 191
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.13 E-value=1.5 Score=39.16 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|.- +. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhh
Confidence 457999999999999988888775 57889999998776544332 357899999942 22 3577888
Q ss_pred eeEEEEeC
Q 008345 169 VEYVVFDE 176 (569)
Q Consensus 169 l~~iViDE 176 (569)
+.+||.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88888643
No 192
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.66 E-value=3.9 Score=42.03 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=24.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhc-CCCCCeEEEEEcCc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPT 102 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~-~~~~g~~~Lil~Pt 102 (569)
.-+.+.|++|+|||......++..+... ....+..++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4588999999999986553232222211 01124567777643
No 193
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.49 E-value=3.4 Score=38.00 Aligned_cols=70 Identities=9% Similarity=0.183 Sum_probs=51.1
Q ss_pred CcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-c-----cccCCCCCC
Q 008345 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (569)
Q Consensus 267 ~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-~-----arGlDip~v 335 (569)
.++||.++|+..+..+.+.+... ++.+..++|+.+...... .+.++..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999888877664 678889999988765543 345677899999942 1 133556666
Q ss_pred CEEE
Q 008345 336 DNVI 339 (569)
Q Consensus 336 ~~VI 339 (569)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6666
No 194
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.43 E-value=2 Score=42.14 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCeeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCChH
Q 008345 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (569)
Q Consensus 167 ~~l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~ 212 (569)
.++++|||||.=.+. +......+..+...+.+..-++.+.++-...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 457899999995433 2223344445545444333344566664433
No 195
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.28 E-value=0.16 Score=50.04 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
.+|+++--.+...+.+...= .. -....+++.||+|+|||....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHHH
Confidence 34666655566666655321 00 011259999999999997543
No 196
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.88 E-value=0.56 Score=52.76 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=26.4
Q ss_pred CeeEEEEeCCCccCCC------Ch----HHHHHHHHHhcCCCCcEEEEEecC
Q 008345 168 SVEYVVFDEADCLFGM------GF----AEQLHKILGQLSENRQTLLFSATL 209 (569)
Q Consensus 168 ~l~~iViDEah~l~~~------~f----~~~l~~i~~~~~~~~q~ll~SAT~ 209 (569)
.-.+|+|||+|.+... .. ..++...+..+....+++++-||-
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 3568999999988732 12 233444455555556677777773
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.81 E-value=1.2 Score=41.81 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=27.9
Q ss_pred CCeeEEEEeCCCccCC-----CChHHHHHHHHHhcCCCCcEEEEEecCChH
Q 008345 167 KSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (569)
Q Consensus 167 ~~l~~iViDEah~l~~-----~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~ 212 (569)
.+.+++|+||.-..++ ......+..++..+...-.+++++.-....
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4578899999987664 334445677776664434466666554433
No 198
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.17 E-value=12 Score=36.76 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=30.3
Q ss_pred cHHHHHHHhhcCCCCCCCeeEEEEeCCCccCC---CChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---MGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 151 p~rl~~~l~~~~~~~l~~l~~iViDEah~l~~---~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
...+++.+..... .--+|||||+|.+.+ ..+...+..+....+ +. .++++++
T Consensus 124 ~~~l~~~l~~~~~----~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~ 178 (357)
T 2fna_A 124 FANLLESFEQASK----DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGS 178 (357)
T ss_dssp HHHHHHHHHHTCS----SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEES
T ss_pred HHHHHHHHHhcCC----CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcC
Confidence 3456666654211 244899999999864 456666666665542 23 3455555
No 199
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.83 E-value=6.2 Score=42.85 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHH
Q 008345 55 PLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
..+..|..+++.||+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 445568899999999999998543
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.76 E-value=9.4 Score=37.94 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=34.8
Q ss_pred eeEEEEeCCCccC-CCChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHHHhc
Q 008345 169 VEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (569)
Q Consensus 169 l~~iViDEah~l~-~~~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~~~~ 220 (569)
.+++++|.+-+.- ......++..+.+.+.+...++.+.+|....+...++.+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4578899887654 344667777776666666677788888766655555443
No 201
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.66 E-value=3.5 Score=41.93 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.+++++-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA--RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH--TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh--cCCCcc
Confidence 4668999999999999988888764 57899999998876554333 35789999994 333 368889
Q ss_pred CeeEEEE
Q 008345 168 SVEYVVF 174 (569)
Q Consensus 168 ~l~~iVi 174 (569)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998885
No 202
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=84.49 E-value=4.4 Score=44.60 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=60.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.++|+.-+..+.+.+.+. ++++..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 3678999999999999988888775 57888889887765544332 25789999994 333 368899
Q ss_pred CeeEEEEeCCCccC
Q 008345 168 SVEYVVFDEADCLF 181 (569)
Q Consensus 168 ~l~~iViDEah~l~ 181 (569)
+++++|+-+++...
T Consensus 513 ~v~lVi~~d~d~~G 526 (661)
T 2d7d_A 513 EVSLVAILDADKEG 526 (661)
T ss_dssp TEEEEEETTTTCCT
T ss_pred CCCEEEEeCccccc
Confidence 99999999988643
No 203
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.12 E-value=0.73 Score=46.31 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|.-+++.|++|+|||...+--+. .+.. .|..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~-~~a~----~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL-SALN----DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH-HHHH----TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHH----cCCeEEEEeCC
Confidence 355689999999999975543333 3222 36678888853
No 204
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.96 E-value=0.89 Score=47.29 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~ 107 (569)
...++++.|+||||||... .+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 4578999999999999864 344444443 3567899999988854
No 205
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.52 E-value=0.65 Score=52.23 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=31.4
Q ss_pred CCCCCCCCCHHHHHHHHHC-CC--CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 23 GGFESLNLSPNVFRAIKRK-GY--KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 23 ~~f~~l~l~~~~~~~l~~~-g~--~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
-+|++++.-.++.+.|.+. -+ ..|.-++... +...+.+++.||+|+|||+..-
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 4678887777888777653 11 1121111000 0113569999999999997543
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.20 E-value=3 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCeeEEEEeCCCccCCC-ChHHHHHHHHHhcCCCCcEEEEEecCChHHHHHH
Q 008345 167 KSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (569)
Q Consensus 167 ~~l~~iViDEah~l~~~-~f~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~~~ 217 (569)
..+++||+|=+=++... ....++..+...+.+..-++.+.|+-.......+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a 230 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVA 230 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHH
Confidence 35678999876554321 2334444444444444445556666444433333
No 207
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.09 E-value=2.6 Score=39.51 Aligned_cols=72 Identities=13% Similarity=0.260 Sum_probs=42.3
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec-----cccc-cCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GIDIPL 334 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----v~ar-GlDip~ 334 (569)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+... ....+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888888754 456677777655332 23445567789999993 2222 245555
Q ss_pred CCEEE
Q 008345 335 LDNVI 339 (569)
Q Consensus 335 v~~VI 339 (569)
+++||
T Consensus 174 ~~~lV 178 (237)
T 3bor_A 174 IKMFV 178 (237)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 66555
No 208
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.92 E-value=3.3 Score=38.36 Aligned_cols=71 Identities=11% Similarity=0.237 Sum_probs=45.2
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----c-cccCCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----A-ARGIDIPLL 335 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~---~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~-arGlDip~v 335 (569)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+...+... +. ...+|+|+|.- . ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4677999999999999998888764 6778888888765543322 22 35889999941 1 123455566
Q ss_pred CEEE
Q 008345 336 DNVI 339 (569)
Q Consensus 336 ~~VI 339 (569)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6655
No 209
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.72 E-value=1.7 Score=41.99 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.7
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFLVP 80 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~lip 80 (569)
+..|.-+++.|++|||||.....-
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 445777999999999999865533
No 210
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.46 E-value=9.2 Score=40.78 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.|+|+.-+..+++.+..... .++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh--cCCCcc
Confidence 456899999999999999998887532 367889999998876544332 35789999994 333 358888
Q ss_pred CeeEEEEeCC
Q 008345 168 SVEYVVFDEA 177 (569)
Q Consensus 168 ~l~~iViDEa 177 (569)
++.+||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8998886543
No 211
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.31 E-value=2.2 Score=48.50 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.++++.|++|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 569999999999998543
No 212
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.22 E-value=0.94 Score=55.70 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 54 MPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 54 i~~il~------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
+..++. ++.+++.||+|+|||......+.+.. . .|.+++++...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-R----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-T----TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-H----cCCcEEEEEcccc
Confidence 556665 57899999999999986653333322 2 3667888887643
No 213
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.94 E-value=1.1 Score=46.63 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=24.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEc--CcHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLA 106 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~--PtreLa 106 (569)
-+++.|++|+|||....-.+. .+... .|.+++++. |.+..+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~---~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK---HKKKVLVVSADVYRPAA 144 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT---SCCCEEEEECCCSSTTH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh---cCCeEEEEecCCCCccH
Confidence 366789999999986553332 22221 156677665 444433
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=81.83 E-value=3 Score=44.77 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.||+|+|||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999998543
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=81.74 E-value=2.1 Score=47.95 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999998543
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.46 E-value=2.9 Score=46.79 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998544
No 217
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=81.38 E-value=2.6 Score=44.92 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=54.7
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
.+.+||.++++.-+......|...|+.+..++|+.+...+...+..+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999988888999999999999994
No 218
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=81.31 E-value=1.9 Score=44.96 Aligned_cols=69 Identities=17% Similarity=0.065 Sum_probs=47.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~i 172 (569)
+.++||.||+++-+..+++.++.. ++++..++|............+..+|+|+|. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE--MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT--CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceEE
Confidence 567999999999999998888875 5788999986544333333346789999994 333 257777 8877
Q ss_pred E
Q 008345 173 V 173 (569)
Q Consensus 173 V 173 (569)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 219
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.27 E-value=4.2 Score=38.12 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc-ccCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPL 334 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----v~a-rGlDip~ 334 (569)
.+.++||.++|+..+..+.+.+.. .++.+..++|+.+.......+. . ..+|+|+|. .+. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988887666654 4888999999988776554433 2 478999994 222 2345666
Q ss_pred CCEEE
Q 008345 335 LDNVI 339 (569)
Q Consensus 335 v~~VI 339 (569)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 66665
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.97 E-value=5.9 Score=39.06 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=31.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhc-------CCCCC----eEEEEEcCcHHH-HHHHHHHHHHh
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-------VPQGG----VRALILSPTRDL-ALQTLKFTKEL 116 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~-------~~~~g----~~~Lil~PtreL-a~Q~~~~~~~~ 116 (569)
.-+++.|++|+|||...+-.+....... ....| .+++++.-...+ ..++...++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4588999999999986553333211110 00123 678888865432 34444445544
No 221
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.85 E-value=7.2 Score=38.27 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=53.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.|+|++-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 457999999999988877777653 68899999998776654433 35789999993 333 3578888
Q ss_pred eeEEEE
Q 008345 169 VEYVVF 174 (569)
Q Consensus 169 l~~iVi 174 (569)
+.+||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 998875
No 222
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.61 E-value=1.9 Score=42.87 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=50.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHc
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (569)
-+++.|++|+|||...+-.+.+.... ..|.+++++.....+... .++.++- +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---g~g~~vlyId~E~s~~~~---ra~~lGv--d~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---YPDAVCLFYDSEFGITPA---YLRSMGV--DP------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---CTTCEEEEEESSCCCCHH---HHHHTTC--CG-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEeccchhhHH---HHHHhCC--CH-------------------
Confidence 47899999999998655443333322 125678998876555322 2444431 11
Q ss_pred CCCCEEEECcHHH----HHHHhhcCCCCCCCeeEEEEeCCCccC
Q 008345 142 QNPDIIIATPGRL----MHHLSEVEDMSLKSVEYVVFDEADCLF 181 (569)
Q Consensus 142 ~~~~IiV~Tp~rl----~~~l~~~~~~~l~~l~~iViDEah~l~ 181 (569)
.++++..|..+ +.++.....+.-..+++||+|-+.-+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444332 222221111223468999999988775
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.34 E-value=6.2 Score=35.61 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc-ccCCCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPLLD 336 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~--~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~a-rGlDip~v~ 336 (569)
.+.++||.++|+..+..+.+.+... .+.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999998888765 466778888876554433322 25789999941 11 234455555
Q ss_pred EEE
Q 008345 337 NVI 339 (569)
Q Consensus 337 ~VI 339 (569)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 224
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.13 E-value=4.3 Score=41.07 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=55.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++.-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 457999999999999998888875 57788999998876654433 35788999994 333 3688999
Q ss_pred eeEEEEe
Q 008345 169 VEYVVFD 175 (569)
Q Consensus 169 l~~iViD 175 (569)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 225
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=79.94 E-value=13 Score=40.01 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=59.1
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.|||+.-+..+++.+..... .++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 356899999999999999998887532 367889999998876544332 35788999994 333 358888
Q ss_pred CeeEEEEeCCC
Q 008345 168 SVEYVVFDEAD 178 (569)
Q Consensus 168 ~l~~iViDEah 178 (569)
++.+||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 99988876543
No 226
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.63 E-value=8.6 Score=38.49 Aligned_cols=72 Identities=8% Similarity=0.169 Sum_probs=54.3
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-c-----cccCCCCC
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPL 334 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-~-----arGlDip~ 334 (569)
+.++||.|+|+..++.+.+.+... ++.+..++|+.+...... .+..+..+|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988877764 788899999988765543 345677899999942 2 23467778
Q ss_pred CCEEEE
Q 008345 335 LDNVIN 340 (569)
Q Consensus 335 v~~VI~ 340 (569)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888874
No 227
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.21 E-value=3.7 Score=38.23 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=39.7
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
.+.++||.++|+..+..+.+.+... ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4668999999999999888888764 46788889887655433222 4678999994
No 228
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.19 E-value=8.8 Score=43.24 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
++.+++.||+|+|||...
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999854
No 229
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.17 E-value=2.9 Score=45.33 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHH--hcCCceEEEEec
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF--RARKTMFLIVTD 324 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F--~~g~~~ILV~Td 324 (569)
.+.+||.++++.-++.....|...|+.+..++|+++...+..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999988888887 468899999996
No 230
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=78.45 E-value=1.4 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 54 i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..++.|.+ +++.|+||||||....
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 344567876 7889999999998643
No 231
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.20 E-value=5.7 Score=39.79 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=57.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCccc
Confidence 467999999999999988888765 47788999998776544333 34688999994 333 3688999
Q ss_pred eeEEEEeCCCc
Q 008345 169 VEYVVFDEADC 179 (569)
Q Consensus 169 l~~iViDEah~ 179 (569)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99998765544
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=78.20 E-value=7.3 Score=41.24 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=22.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.+++.|++|+|||..+.-.+. .+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~----~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR----KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH----TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh----CCCeEEEEec
Confidence 377889999999986552222 2222 2566777664
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=77.48 E-value=3.2 Score=39.55 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+..+++.|++|+|||...-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45789999999999997543
No 234
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=77.40 E-value=6.9 Score=43.01 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=59.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++|+.-+..+.+.+.+. ++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 668999999999999988888775 47888889887765544332 25689999993 222 3588899
Q ss_pred eeEEEEeCCCcc
Q 008345 169 VEYVVFDEADCL 180 (569)
Q Consensus 169 l~~iViDEah~l 180 (569)
++++|+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888764
No 235
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.35 E-value=1.7 Score=43.43 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=18.6
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ ++..|+||||||....
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 71 KDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCeEEEEEECCCCCCCceEec
Confidence 34567776 7889999999998643
No 236
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=77.33 E-value=6.3 Score=37.24 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=49.5
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cc--ccCCCCC
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA--RGIDIPL 334 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~a--rGlDip~ 334 (569)
+.++||.++|+..+..+.+.+... ++.+..++|+.+.......+ .+..+|+|+|.- +. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888776654 78889999998866544332 356899999942 11 3456666
Q ss_pred CCEEE
Q 008345 335 LDNVI 339 (569)
Q Consensus 335 v~~VI 339 (569)
+++||
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 66665
No 237
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.98 E-value=6.7 Score=38.75 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=54.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.+++++-+..+++.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 4567999999999999988888775 57888999998766544332 34788999994 2222 47788
Q ss_pred CeeEEEEeC
Q 008345 168 SVEYVVFDE 176 (569)
Q Consensus 168 ~l~~iViDE 176 (569)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888887643
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=76.89 E-value=1.9 Score=39.99 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=28.4
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 008345 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 42 g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~ 77 (569)
.+..-+.-|..++..+..|.-+.+.||.|||||..+
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344445567788888888888999999999999854
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.81 E-value=6.1 Score=41.94 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHH
Q 008345 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAA 76 (569)
Q Consensus 35 ~~~l~~~g~~~~t~iQ~~~i~~-il~g~dvl~~a~TGSGKT~a 76 (569)
+..+.+.|. +++.+...+.. +..|..+++.|+||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555552 34444444543 34678899999999999984
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.67 E-value=2.4 Score=39.70 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|+|||...+--+.+.+... +..+++++-.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeeccc
Confidence 45689999999999976553333333322 4457777643
No 241
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.65 E-value=1.7 Score=43.79 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=17.9
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
..++.|.+ +++.|+||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 33456776 788999999999864
No 242
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=76.46 E-value=1.7 Score=44.65 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ +++.|+||||||....
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEee
Confidence 34567766 7789999999998754
No 243
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=76.35 E-value=6.1 Score=39.86 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=54.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.+++++-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 457999999999999999888876 47788899998876544332 34678999994 222 3588889
Q ss_pred eeEEEEe
Q 008345 169 VEYVVFD 175 (569)
Q Consensus 169 l~~iViD 175 (569)
+.+||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9988863
No 244
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=76.23 E-value=7 Score=36.25 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=48.9
Q ss_pred hhHHHH-HHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEE
Q 008345 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (569)
Q Consensus 249 ~~k~~~-L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~IL 320 (569)
..|... ++-++.... ..+.++||.++|+..+..+.+.+... ++.+..++|+.+...+...+ ...+|+
T Consensus 72 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Ii 146 (230)
T 2oxc_A 72 TGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIA 146 (230)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEE
Confidence 445544 333444332 23568999999999999988888764 67788899998876654332 357899
Q ss_pred EEec
Q 008345 321 IVTD 324 (569)
Q Consensus 321 V~Td 324 (569)
|+|.
T Consensus 147 v~Tp 150 (230)
T 2oxc_A 147 VGSP 150 (230)
T ss_dssp EECH
T ss_pred EECH
Confidence 9995
No 245
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.20 E-value=7.5 Score=39.88 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEc--------CCCHHHHHHHH
Q 008345 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL 140 (569)
Q Consensus 69 TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~~l 140 (569)
..++|.... .-++...... ..+.++||.++++.-+..+.+.++.. ++.+..++| +.+..+....+
T Consensus 340 ~~~~k~~~l-~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDKL-KEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHHH-HHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHHH-HHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 456676543 3333333211 13567999999999999988888775 578888988 55443332222
Q ss_pred ----cCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 141 ----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 141 ----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
.+..+|+|+|. .+. ..+++..+.+||+-+..
T Consensus 413 ~~F~~~~~~vLv~T~-----~~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-----VGE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHTSCSEEEECG-----GGG--GGGGSTTCCEEEESSCC
T ss_pred HHHhcCCceEEEECC-----ccc--cCCCchhCCEEEEeCCC
Confidence 35688999993 222 25778888888865443
No 246
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.93 E-value=2 Score=44.24 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.+..++.|.+ +++.|+||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4555677877 6789999999998754
No 247
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=75.90 E-value=5.3 Score=38.52 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHHhcCC-----cEEEEcCCCchHHHHHH
Q 008345 24 GFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLILSGA-----DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 24 ~f~~l~l~~~~~~~l~~~g~~~~t~iQ~-~~i~~il~g~-----dvl~~a~TGSGKT~a~l 78 (569)
.+++ +--..+++-|+-.||. |++. .++..++.++ .+++.||+|+|||..+.
T Consensus 66 ~~~~-~~~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 66 PVED-ISSNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCSC-GGGCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CCCC-CchHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3443 3344788888888877 6664 3356667654 49999999999998665
No 248
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.87 E-value=1.9 Score=43.73 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.0
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
..++.|.+ +++.|+||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567776 778999999999864
No 249
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=75.87 E-value=41 Score=29.58 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=68.9
Q ss_pred ChHHHHHHHhcCCCCeeeeeccccccCCCceEEEEEcc-hhhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH
Q 008345 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (569)
Q Consensus 210 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~ 288 (569)
+..+.++++..+.+...+... ........+..+. ..+-...+...+.......+.+-|.|.+..++..+...|..
T Consensus 8 t~~Il~~An~li~~~~~~~~~----~~~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~ 83 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAF----DRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKA 83 (174)
T ss_dssp CHHHHHHHHTTSCC------------CCCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCcccCC----CCCCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHH
Confidence 356677777776543211111 1111222333333 33444455555544212346788999999999999999999
Q ss_pred CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCCCEEEEcCC
Q 008345 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (569)
Q Consensus 289 ~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGlDip~v~~VI~~d~ 343 (569)
.|+++..+.++-. ...-.|.|.|--.+.|+.+ +.||.+++
T Consensus 84 ~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 84 RGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred cCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 9988776665421 1234799999999999998 56665554
No 250
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=75.78 E-value=1.9 Score=43.42 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.0
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
..++.|.+ +++.|+||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567776 778999999999864
No 251
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=75.41 E-value=1.9 Score=43.77 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ +++.|+||||||....
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34567876 7789999999998643
No 252
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=75.29 E-value=2 Score=43.42 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 54 i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..++.|.+ +++.|+||||||....
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 344567877 6789999999998653
No 253
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=75.28 E-value=2 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ ++..|+||||||....
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHcCCccceeeecCCCCCCCeEEe
Confidence 44567776 7789999999998653
No 254
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=75.22 E-value=2 Score=42.86 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.+..++.|.+ +++.|+||||||....
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4556678877 7789999999998643
No 255
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=75.18 E-value=6.9 Score=39.63 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=54.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCccc
Confidence 347999999999999988888765 57888999998866544333 35788999994 333 3688899
Q ss_pred eeEEEEe
Q 008345 169 VEYVVFD 175 (569)
Q Consensus 169 l~~iViD 175 (569)
+++||.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9988863
No 256
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=75.14 E-value=2 Score=43.40 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=18.0
Q ss_pred HHhcCCc--EEEEcCCCchHHHHHH
Q 008345 56 LILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 56 ~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.++.|.+ +++.|+||||||....
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCcceEEEECCCCCCcceEee
Confidence 4567776 7789999999998643
No 257
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=75.13 E-value=2 Score=43.15 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
..++.|.+ ++..|+||||||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34567776 778999999999864
No 258
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.08 E-value=1.9 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ +++.|+||||||....
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34567876 7789999999998643
No 259
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.06 E-value=7.8 Score=34.96 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
+.++||.++|+..++.+.+.+... +..+..++|+.+....... + .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 457999999999999888877653 5677888998876543322 2 35678999995
No 260
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=75.02 E-value=2 Score=43.43 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 54 i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..++.|.+ +++.|+||||||....
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEECCCCCCCceEec
Confidence 344567877 6789999999998643
No 261
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=74.98 E-value=2.1 Score=43.31 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=18.1
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
..++.|.+ +++.|+||||||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34567776 788999999999864
No 262
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.95 E-value=1.8 Score=43.67 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.+..++.|.+ +++.|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4455667877 6789999999998754
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=74.94 E-value=1.4 Score=39.54 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.|+-+++.||+|||||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999998543
No 264
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=74.86 E-value=2.1 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=18.5
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ ++..|+||||||....
T Consensus 83 ~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 83 QHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCeeEEEEeCCCCCCCceEee
Confidence 34567876 7789999999998643
No 265
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=74.33 E-value=2.1 Score=43.65 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 55 ~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
..++.|.+ +++.|+||||||....
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 34567766 7889999999998754
No 266
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.87 E-value=6.5 Score=45.76 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHH----CCC----CceeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~----~~~----~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (569)
|....+-.+......+.++||.++|+.-+..+.+.+.. .++ .+..++|+.+...+....+.+.+ .+|+|+
T Consensus 84 KTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~ 161 (1054)
T 1gku_B 84 KTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVIT 161 (1054)
T ss_dssp SHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEE
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEE
Confidence 33333333444444678999999999999888777764 356 78899999998887777777766 999999
Q ss_pred ec-cccccCC-CCCCCEEEE
Q 008345 323 TD-VAARGID-IPLLDNVIN 340 (569)
Q Consensus 323 Td-v~arGlD-ip~v~~VI~ 340 (569)
|+ .+..-+. +..+++||.
T Consensus 162 TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 162 TTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp EHHHHHHCSTTSCCCSEEEE
T ss_pred cHHHHHHHHHHhccCCEEEE
Confidence 94 2222222 557777773
No 267
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=73.86 E-value=7.7 Score=40.02 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=53.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCCeeE
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~ 171 (569)
+||.|+|+.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.++++
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~~ 371 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIKH 371 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCCE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCCE
Confidence 999999999999988888765 57889999998876554433 34789999995 333 3688889998
Q ss_pred EEE
Q 008345 172 VVF 174 (569)
Q Consensus 172 iVi 174 (569)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 268
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=73.86 E-value=1.9 Score=43.50 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 54 i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..++.|.+ +++.|+||||||....
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344567776 7789999999998754
No 269
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.72 E-value=2.1 Score=43.47 Aligned_cols=23 Identities=39% Similarity=0.661 Sum_probs=18.0
Q ss_pred HHhcCCc--EEEEcCCCchHHHHHH
Q 008345 56 LILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 56 ~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.++.|.+ +++.|+||||||....
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCceEEEEeecCCCCCcceecc
Confidence 4566776 7789999999998643
No 270
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=73.65 E-value=2 Score=43.64 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.+..++.|.+ ++..|+||||||....
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4556678877 7789999999998643
No 271
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.60 E-value=3.8 Score=42.38 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhc--CCcEEEEcCCCchHHHH
Q 008345 48 PIQRKTMPLILS--GADVVAMARTGSGKTAA 76 (569)
Q Consensus 48 ~iQ~~~i~~il~--g~dvl~~a~TGSGKT~a 76 (569)
+-+..++..++. |.-+++.||||||||..
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 344555554443 34578999999999984
No 272
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.16 E-value=2.2 Score=44.06 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
.+..++.|.+ +++.|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4566778877 778999999999865
No 273
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.73 E-value=5.3 Score=50.88 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHH---HHHhcCCcEEEEcCCCchHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQR-KTM---PLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~-~~i---~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
+...+.+.+.+.|+. +++.+. +++ ..+...+.+++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 345566777788887 666663 333 334457789999999999999765
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.68 E-value=5.7 Score=38.90 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999998654
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.67 E-value=4 Score=40.24 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.|++|+|||....
T Consensus 107 i~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCChHHHHHH
Confidence 6789999999998544
No 276
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.01 E-value=0.74 Score=41.00 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=50.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPD 98 (170)
Confidence 467999999999998888877664 57788888887655433322 23678999993 222 2466777
Q ss_pred eeEEEEeC
Q 008345 169 VEYVVFDE 176 (569)
Q Consensus 169 l~~iViDE 176 (569)
+.+||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 77777543
No 277
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=72.20 E-value=2.2 Score=43.51 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=23.2
Q ss_pred ChHHHHHHHH--------HHhcCCc--EEEEcCCCchHHHHHH
Q 008345 46 PTPIQRKTMP--------LILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 46 ~t~iQ~~~i~--------~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..-|.+++. .++.|.+ +++.|+||||||....
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 3445666654 3456766 7789999999998643
No 278
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.10 E-value=2.6 Score=43.89 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=18.1
Q ss_pred HHhcCCc--EEEEcCCCchHHHHHH
Q 008345 56 LILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 56 ~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
.++.|.+ +++.|+||||||....
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HhhcCCceEEEEeCCCCCCCCEEee
Confidence 3467776 7889999999998653
No 279
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.95 E-value=7.2 Score=37.69 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 280
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.82 E-value=12 Score=39.48 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+.+.|++|||||...-
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 37789999999998543
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.71 E-value=1.5 Score=42.30 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~ 77 (569)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 445677899999999999843
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.64 E-value=10 Score=46.80 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=64.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccC-CCeEEEEEcCCCHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQF 137 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~-~l~~~~~~gg~~~~~~~ 137 (569)
.++.+++.|++|+|||.....-+.+... .|.+++++.-. ++..+++ ...++-.. ++. +..-... +
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k-----~Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~---~~~pd~~-e-- 1145 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAE-HALDPIY--ARKLGVDIDNLL---CSQPDTG-E-- 1145 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTT-SCCCHHH--HHHTTCCTTTCE---EECCSSH-H--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEEcc-ccHHHHH--HHHcCCChhHhe---eecCcch-H--
Confidence 4688999999999999876644443332 36678887643 3333333 23333211 111 1110000 0
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCCccC-------CC-----C-----hHHHHHHHHHhcCCCC
Q 008345 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-------GM-----G-----FAEQLHKILGQLSENR 200 (569)
Q Consensus 138 ~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah~l~-------~~-----~-----f~~~l~~i~~~~~~~~ 200 (569)
+..++.+.+.+ ....++|||||...+. ++ | +...+.++...+....
T Consensus 1146 ------------~~~~i~~~l~~-----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~ 1208 (2050)
T 3cmu_A 1146 ------------QALEICDALAR-----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1208 (2050)
T ss_dssp ------------HHHHHHHHHHH-----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------HHHHHHHHHHH-----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 01223333333 3457899999988663 11 2 2234556666666666
Q ss_pred cEEEEEecC
Q 008345 201 QTLLFSATL 209 (569)
Q Consensus 201 q~ll~SAT~ 209 (569)
-++++|...
T Consensus 1209 stiI~tN~~ 1217 (2050)
T 3cmu_A 1209 TLLIFINQI 1217 (2050)
T ss_dssp CEEEEEECC
T ss_pred eEEEEecCC
Confidence 677777654
No 283
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=71.59 E-value=4.6 Score=44.55 Aligned_cols=68 Identities=9% Similarity=0.124 Sum_probs=48.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~ 171 (569)
+.++||.||+++-+..+++.++.. ++++..++|... ....... .+..+|+|+|. .+.. .+++. +.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 567999999999999888877764 688999998532 2222222 35789999993 3332 57777 776
Q ss_pred EE
Q 008345 172 VV 173 (569)
Q Consensus 172 iV 173 (569)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 284
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=71.58 E-value=2.1 Score=42.90 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998665
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.37 E-value=1.7 Score=43.07 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+-++++||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998665
No 286
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.35 E-value=18 Score=34.32 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=49.8
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc--ccCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA--RGIDIP 333 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----v~a--rGlDip 333 (569)
.+.++||.++|+.-++.+.+.+.. .+..+..++|+......... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 467899999999999988887776 35667788888776654332 3333 88999993 222 245666
Q ss_pred CCCEEEE
Q 008345 334 LLDNVIN 340 (569)
Q Consensus 334 ~v~~VI~ 340 (569)
.+++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 6776663
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=71.33 E-value=5.3 Score=42.29 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 41 ~g~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
.++.--...-..+.-.+..+.++++.||+|+|||...-
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 34443444445556666778999999999999998543
No 288
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.17 E-value=21 Score=37.39 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.4
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 94 ~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
...+|++.+++-+..+.+.+...+ .++..++|+.+..+....+ .+..+|+|+|+..+- ..+++.++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKNL 417 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCSE
T ss_pred CCeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccccC
Confidence 344455555666666666665543 4788899988765543322 357799999976555 35889999
Q ss_pred eEEEEeCCCc
Q 008345 170 EYVVFDEADC 179 (569)
Q Consensus 170 ~~iViDEah~ 179 (569)
.+||+.....
T Consensus 418 ~~vi~~~~~~ 427 (510)
T 2oca_A 418 HHVVLAHGVK 427 (510)
T ss_dssp EEEEESSCCC
T ss_pred cEEEEeCCCC
Confidence 9999988773
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=71.16 E-value=2 Score=39.57 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.|+-+++.||+|||||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 36668899999999998544
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=71.09 E-value=4 Score=41.21 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAA 76 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a 76 (569)
+..|..+++.|+||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34688999999999999984
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.96 E-value=1.9 Score=42.66 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999998665
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.85 E-value=2 Score=39.24 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~ 77 (569)
.|+-+++.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999854
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=70.67 E-value=5.5 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
....+++.||+|+|||.+.-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998554
No 294
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=70.44 E-value=2.6 Score=42.87 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 008345 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 54 i~~il~g~d--vl~~a~TGSGKT~a~l 78 (569)
+..++.|.+ +++.|+||||||....
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344567776 7789999999998643
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.34 E-value=2.1 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.++.+++.|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46779999999999998654
No 296
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=70.32 E-value=4.7 Score=41.70 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=47.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~i 172 (569)
+.++||++|+++-+..+++.++.. ++++..++|+...........+..+|+|+|. .+.. .+++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcEE
Confidence 346999999999999988888876 5789999987433222223346789999994 3332 46665 4444
No 297
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.26 E-value=3.3 Score=42.26 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=28.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHH
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreL 105 (569)
.+.++++.|+||||||...-.-+ ..+.. .|.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~-~~~~~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLL-LREYM----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHH-HHHHH----CCCEEEEEeCCcCH
Confidence 46789999999999997544322 23322 35668888887653
No 298
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=70.24 E-value=2.7 Score=41.60 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=20.4
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 52 KTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 52 ~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
.....+..+.++++.||+|+|||...-
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 333445568899999999999997543
No 299
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.13 E-value=1.9 Score=41.16 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
++++|+||||||....
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999998543
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.99 E-value=4.6 Score=40.26 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 008345 58 LSGADVVAMARTGSGKTAA 76 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a 76 (569)
..|..+++.|+||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4588999999999999983
No 301
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=69.79 E-value=2.4 Score=41.95 Aligned_cols=38 Identities=24% Similarity=0.055 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|+|||...+--+..... .|..+++++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEECC
Confidence 456899999999999755533333222 24678888754
No 302
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.71 E-value=2.2 Score=38.09 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998654
No 303
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=69.11 E-value=11 Score=42.07 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHh-------cccCCCeEEEEEcCCCHHHHHHHHcC---------CCCEEEECcHHHHH
Q 008345 93 GVRALILSPTRDLALQTLKFTKEL-------GRYTDLRISLLVGGDSMESQFEELAQ---------NPDIIIATPGRLMH 156 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~-------~~~~~l~~~~~~gg~~~~~~~~~l~~---------~~~IiV~Tp~rl~~ 156 (569)
+.++||.+|++.-+..+++.+... ....++.+..++|+.+..++...+.. ...|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 457999999999999998888752 22357889999999988777655432 457999994
Q ss_pred HHhhcCCCCCCCeeEEEE
Q 008345 157 HLSEVEDMSLKSVEYVVF 174 (569)
Q Consensus 157 ~l~~~~~~~l~~l~~iVi 174 (569)
.+.. .+++.++.+||-
T Consensus 378 iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH--TCCCTTEEEEEE
T ss_pred HHHh--CcCcCCeEEEEe
Confidence 2332 578888987763
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=69.09 E-value=2.2 Score=37.34 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998554
No 305
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=69.04 E-value=6 Score=47.26 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEE
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll 204 (569)
+.+-+++|+||+=.-+|..-...+.+.++....++-++.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 345678999999888877767777777777665553333
No 306
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.04 E-value=2.2 Score=38.73 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~ 77 (569)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999854
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=69.00 E-value=2.3 Score=37.60 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998654
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=68.38 E-value=2.5 Score=38.99 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
++-+++.|+||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999997655
No 309
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=68.31 E-value=8.2 Score=35.40 Aligned_cols=86 Identities=12% Similarity=0.120 Sum_probs=47.6
Q ss_pred hhHHHH-HHHHHHHhc--CCCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 008345 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (569)
Q Consensus 249 ~~k~~~-L~~ll~~~~--~~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV 321 (569)
..|... ++.++.... ..+.++||.++|+..+..+.+.+... ++.+..++|+.+....... +. ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEE
Confidence 445544 344443322 23568999999999998888777653 6777888888765443322 22 378999
Q ss_pred Eeccc------cccCCCCCCCEEE
Q 008345 322 VTDVA------ARGIDIPLLDNVI 339 (569)
Q Consensus 322 ~Tdv~------arGlDip~v~~VI 339 (569)
+|.-. ...+++..+++||
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEE
Confidence 98421 2234445555555
No 310
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.27 E-value=3.6 Score=40.44 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
....+++.|++|+|||.+.-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 35779999999999998543
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=68.00 E-value=2.5 Score=38.82 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~l 78 (569)
..|+-+++.||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367789999999999998543
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.70 E-value=1.8 Score=38.88 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~ 77 (569)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34667899999999999854
No 313
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=67.58 E-value=2.7 Score=37.84 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 008345 61 ADVVAMARTGSGKTAAF 77 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~ 77 (569)
+-+.+.||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999843
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.55 E-value=2.6 Score=38.19 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~ 77 (569)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999854
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.32 E-value=2.4 Score=38.79 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.6
Q ss_pred HhcCCcEEEEcCCCchHHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~l 78 (569)
+..|+-++++|++|||||...-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 3457789999999999998543
No 316
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=67.15 E-value=8.1 Score=35.72 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHH
Q 008345 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 32 ~~~~~~l~~~g~~~~t~iQ~~~i~~il~g----~dvl~~a~TGSGKT~a~l 78 (569)
..+.+-|+=.|+. +... ..++..++.+ +.+++.||+|+|||..+.
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3566666544544 4444 4555666655 248999999999997654
No 317
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=67.08 E-value=2.8 Score=38.39 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
|.-+++.|++|+|||.....-+. . .+..++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~----~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L----SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H----HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H----cCCcEEEEEC
Confidence 45689999999999986553332 1 2456777763
No 318
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=67.07 E-value=7.7 Score=41.13 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
+.++++.|.||||||.+.-..+...+... .....+++++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~-~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKA-QPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhC-CCceEEEEEECCc
Confidence 45799999999999986543333333332 2223455555454
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=66.72 E-value=2 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~l 78 (569)
..++.+++.|++|||||.+.-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346779999999999998544
No 320
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.53 E-value=2.9 Score=38.04 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 008345 61 ADVVAMARTGSGKTAAF 77 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~ 77 (569)
+.+|++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999853
No 321
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.42 E-value=10 Score=48.92 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHH---HHHhcCCcEEEEcCCCchHHHHHH
Q 008345 30 LSPNVFRAIKRKGYKVPTPIQR-KTM---PLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 30 l~~~~~~~l~~~g~~~~t~iQ~-~~i---~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
|...+.+.+.++|+. |+|.|. +++ ..+...+.+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 445667777788987 666664 444 333446779999999999999875
No 322
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=66.29 E-value=12 Score=39.32 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=54.6
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEc--------CCCHHHHHHH---
Q 008345 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEE--- 139 (569)
Q Consensus 71 SGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~~--- 139 (569)
++|..... -++..+... ..+.++||.++++.-+..+.+.+...+...++++..++| +.+..+....
T Consensus 370 ~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 446 (555)
T 3tbk_A 370 NPKLRDLY-LVLQEEYHL--KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEA 446 (555)
T ss_dssp CHHHHHHH-HHHHHHHHH--CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------
T ss_pred CHHHHHHH-HHHHHHhcc--CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHH
Confidence 56765433 333333222 134679999999999999999998875444455555554 4443333222
Q ss_pred Hc--CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 140 LA--QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 140 l~--~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
.. +..+|+|+|. .+. ..+++.++++||.=
T Consensus 447 F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~~ 477 (555)
T 3tbk_A 447 FRASGDNNILIATS-----VAD--EGIDIAECNLVILY 477 (555)
T ss_dssp -----CCSEEEECC-----CTT--CCEETTSCSEEEEE
T ss_pred HhcCCCeeEEEEcc-----hhh--cCCccccCCEEEEe
Confidence 22 3578999994 222 35788888888763
No 323
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=66.26 E-value=4.1 Score=41.18 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=16.3
Q ss_pred cCCc--EEEEcCCCchHHHHHH
Q 008345 59 SGAD--VVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~d--vl~~a~TGSGKT~a~l 78 (569)
.|.+ +++.|+||||||....
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3766 6899999999998654
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=66.12 E-value=3.1 Score=36.59 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999854
No 325
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=66.09 E-value=4.2 Score=36.81 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCEEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 144 ~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
.+++-+.++.+...+... -..+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCC
Confidence 455555566776666652 1357889999543
No 326
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.97 E-value=15 Score=43.81 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCC
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~ 200 (569)
+++-+++|+||+=.-+|..-...+.+.+..+..++
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~ 604 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGR 604 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 45678899999998888776667777776665444
No 327
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=65.79 E-value=4.1 Score=37.38 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHH
Q 008345 63 VVAMARTGSGKTAAFLV 79 (569)
Q Consensus 63 vl~~a~TGSGKT~a~li 79 (569)
.++.|+.|||||...+.
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 68999999999986543
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=65.71 E-value=4.3 Score=36.15 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|+.|||||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 329
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.23 E-value=3.2 Score=38.52 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~ 77 (569)
..|+-+.+.||+|||||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778999999999999843
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=65.21 E-value=3.1 Score=37.11 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568999999999998543
No 331
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=65.06 E-value=11 Score=40.48 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCeeEEEEeCCCccCCCChHHHHHHHHHhcCCCCcEEEEEec
Q 008345 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (569)
Q Consensus 166 l~~l~~iViDEah~l~~~~f~~~l~~i~~~~~~~~q~ll~SAT 208 (569)
+.+-+++++||.-.-+|......+.+.+..+..+ .++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567899999999888887777888888777553 45665554
No 332
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.79 E-value=3.4 Score=38.76 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=45.3
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----ccc---cCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR---GIDI 332 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~ar---GlDi 332 (569)
.+.++||.++|+..+..+.+.+... ++.+..++|+..... .......+..+|+|+|.- +.+ ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999988888764 556666665422111 111223457789999931 112 3566
Q ss_pred CCCCEEEE
Q 008345 333 PLLDNVIN 340 (569)
Q Consensus 333 p~v~~VI~ 340 (569)
.++.+||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 66666663
No 333
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.75 E-value=5.1 Score=47.23 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=28.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 64 l~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
++.|..|||||.+.+--+...+.... .+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~--~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP--FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT--TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--CCCcEEEEecCc
Confidence 68899999999987755555554432 356799999976
No 334
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.72 E-value=23 Score=33.09 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-c----c-ccCCCCCC
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----A-RGIDIPLL 335 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-~----a-rGlDip~v 335 (569)
+.++||.++|+..+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|.- + . ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999998887777653 56777888887655433222 356789999942 1 1 12455555
Q ss_pred CEEE
Q 008345 336 DNVI 339 (569)
Q Consensus 336 ~~VI 339 (569)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 5555
No 335
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=64.65 E-value=24 Score=28.39 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=43.9
Q ss_pred EEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 008345 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (569)
Q Consensus 269 ~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (569)
.+||.+.......+...++..|..+..+|++.+...|..-++.|....+++--+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtv 58 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTV 58 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeee
Confidence 356777777777888888889999999999999999999999998776665433
No 336
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=64.21 E-value=8 Score=40.21 Aligned_cols=68 Identities=9% Similarity=0.112 Sum_probs=47.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH-cCCCCEEEECcHHHHHHHhhcCCCCCCCeeE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~ 171 (569)
+.++||.+|++.-+.++++.++.. ++.+..++|.... ...... .+..+|+|+|. .+.. .+++.+ .+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----HHHh--CcCCCC-CE
Confidence 347999999999999988887764 5788888886543 222222 35789999994 3432 577777 65
Q ss_pred EE
Q 008345 172 VV 173 (569)
Q Consensus 172 iV 173 (569)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 337
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=64.12 E-value=3.1 Score=36.66 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|||||...-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37899999999998554
No 338
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.08 E-value=3.7 Score=40.84 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998654
No 339
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.68 E-value=4.6 Score=40.76 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=29.3
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 53 ~i~~il~------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
.+..++. |.-+++.||+|+|||...+ .+...+.. .|..++++.+...
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal-~la~~~~~----~gg~VlyId~E~s 100 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLAL-HAIAEAQK----MGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHH-HHHHHHHH----TTCCEEEEESSCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEEecccc
Confidence 4555555 3558899999999997544 33333332 2445788876543
No 340
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.54 E-value=4.3 Score=37.20 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
.++.++... .+..|.-+++.|++|||||...-
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 456666663 34567778999999999998543
No 341
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.32 E-value=3.5 Score=36.93 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+..+++.|++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998643
No 342
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=63.31 E-value=3.5 Score=37.73 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=16.7
Q ss_pred HHhcCCcEEEEcCCCchHHHHH
Q 008345 56 LILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 56 ~il~g~dvl~~a~TGSGKT~a~ 77 (569)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999844
No 343
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=63.26 E-value=3.2 Score=36.26 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998544
No 344
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.01 E-value=3.3 Score=39.27 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g--~~~~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
...+|+++.-.+.+.+.+.+.- +..+..++... ....+.+++.||+|+|||...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 3457888877777776665320 01111001000 0113569999999999997543
No 345
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.66 E-value=4.6 Score=36.46 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHH
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptre 104 (569)
+++.|++|||||.... ++... +.+++++.....
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHH-----HHHhc----CCCeEEEecCCC
Confidence 6889999999997555 44432 345788887543
No 346
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=62.52 E-value=11 Score=40.56 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=26.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
.++++.|.||||||.+.-..++..+... .....+.+++=|-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~-sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKS-TPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhC-CCcceEEEEeCCCh
Confidence 5799999999999986544444433333 23345666666653
No 347
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=62.50 E-value=3.2 Score=41.95 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 345688999999999974
No 348
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=62.39 E-value=6.7 Score=40.83 Aligned_cols=38 Identities=24% Similarity=0.070 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|+|||...+--+... .. .|.++++++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~-a~----~g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNM-SD----NDDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHH-HH----TTCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHH-HH----cCCEEEEEECC
Confidence 4558999999999998655333333 22 25678888854
No 349
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=62.36 E-value=6.3 Score=38.24 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcC
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~P 101 (569)
.|.-+++.|++|+|||.....-+. .+... .|..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~-~~~~~---~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL-QWGTA---MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH-HHHHT---SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH-HHHHH---cCCeEEEEeC
Confidence 466789999999999985443222 22221 2545766653
No 350
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=62.12 E-value=13 Score=37.14 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
.+.+++.||+|+|||...-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998544
No 351
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=62.07 E-value=13 Score=40.34 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=48.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~i 172 (569)
+.++||.++|+.-+..+++.++.. ++++..++|............+..+|+|+|. .+.. .+++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceEE
Confidence 457999999999999998888875 5788888886433322222346789999994 3433 46674 7666
Q ss_pred E
Q 008345 173 V 173 (569)
Q Consensus 173 V 173 (569)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 352
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=62.03 E-value=3.3 Score=36.73 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.|.-+.+.|+.|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35557899999999998544
No 353
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=62.01 E-value=3.4 Score=42.39 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-++++||||||||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 36889999999998654
No 354
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.67 E-value=3.6 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998654
No 355
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=61.50 E-value=4 Score=37.06 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.|.-+++.|+.|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 356
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.46 E-value=11 Score=40.10 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=24.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|.-+++.|++|+|||.....-+- .+.. .|.+++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g-~~~~----~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE-NACA----NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH-HHHT----TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHh----CCCCEEEEEEe
Confidence 356688999999999985442221 2221 25567777764
No 357
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.39 E-value=11 Score=44.49 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=39.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHhhhcC-------CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGVRALILSPTRDLALQTLKFTKE 115 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l~~l~~~~-------~~~g~~~Lil~PtreLa~Q~~~~~~~ 115 (569)
..++.|..|||||.+..--++..+.... ...-.++|+|+=|+.=|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999987777777665421 11234699999999888887775543
No 358
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.23 E-value=4.1 Score=37.99 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.3
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 008345 57 ILSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 57 il~g~dvl~~a~TGSGKT~a~ 77 (569)
+-.|.-+++.||.|||||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345777899999999999843
No 359
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=60.66 E-value=3.7 Score=41.68 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~ 77 (569)
..|.-+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999843
No 360
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=60.41 E-value=43 Score=37.49 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcC----CCC---EEEECcHHHHHHHhhcCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ----NPD---IIIATPGRLMHHLSEVEDM 164 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~----~~~---IiV~Tp~rl~~~l~~~~~~ 164 (569)
.|.++||.+..+..+..+...+... ++.+..+.|+.+..+....+.. +.. ++++| ...- ..+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-~agg------~Gl 639 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-RAGG------LGI 639 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-HHHT------TTC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-cccc------CCC
Confidence 4678999999998877777766654 5788899999887776555532 222 44554 3222 357
Q ss_pred CCCCeeEEEEeCCC
Q 008345 165 SLKSVEYVVFDEAD 178 (569)
Q Consensus 165 ~l~~l~~iViDEah 178 (569)
++...+.||+=+.+
T Consensus 640 NL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 640 NLMTADTVVIFDSD 653 (800)
T ss_dssp CCTTCCEEEESSCC
T ss_pred CccccceEEEecCC
Confidence 88888887774443
No 361
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=59.46 E-value=3.9 Score=39.88 Aligned_cols=18 Identities=17% Similarity=0.064 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=59.25 E-value=4.1 Score=36.40 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.6
Q ss_pred EEEEcCCCchHHHHH
Q 008345 63 VVAMARTGSGKTAAF 77 (569)
Q Consensus 63 vl~~a~TGSGKT~a~ 77 (569)
+.+.|+.|||||...
T Consensus 7 i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999743
No 363
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=59.21 E-value=3.9 Score=36.09 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
|.-+++.|+.|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998543
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=59.09 E-value=3.4 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
|.-+++.|+.|||||...-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998544
No 365
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=58.24 E-value=14 Score=35.77 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=49.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCC
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~ 167 (569)
.+.++||.+++++-+..+.+.+. .+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS--RGLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH--TTCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc--cCCCcc
Confidence 45679999999998877655443 466778887766544333 34789999994 333 368888
Q ss_pred CeeEEEEeC
Q 008345 168 SVEYVVFDE 176 (569)
Q Consensus 168 ~l~~iViDE 176 (569)
+++++|.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 999888643
No 366
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.19 E-value=56 Score=32.42 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998654
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=57.99 E-value=4 Score=36.46 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|+.|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4558899999999998544
No 368
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.97 E-value=9.8 Score=35.67 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=16.6
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFLVPML 82 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~lip~l 82 (569)
.+++.++.|+|||...+--..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999997664433
No 369
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.83 E-value=5.6 Score=38.64 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.||+|+|||.+.-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998544
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=57.79 E-value=4.6 Score=36.13 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|||||...-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999998544
No 371
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.48 E-value=5 Score=40.53 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.||+|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998544
No 372
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=57.12 E-value=12 Score=36.57 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=52.1
Q ss_pred hhHHHH-HHHHHHHhcC--CCCcEEEEEcChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEE
Q 008345 249 EEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (569)
Q Consensus 249 ~~k~~~-L~~ll~~~~~--~~~~~IIF~~t~~~~~~l~~~L~~~-----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~IL 320 (569)
..|... ++-++..... .+.++||.++|+..+..+...+... ++.+...+|+.+.... .....+|+
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEE
Confidence 345443 3445544332 2347999999999999988777653 4556667766543221 14567899
Q ss_pred EEeccc-----c--ccCCCCCCCEEEE
Q 008345 321 IVTDVA-----A--RGIDIPLLDNVIN 340 (569)
Q Consensus 321 V~Tdv~-----a--rGlDip~v~~VI~ 340 (569)
|+|.-. . ..+++..+.++|.
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEE
Confidence 999522 1 3456667777663
No 373
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.06 E-value=4.5 Score=36.09 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998654
No 374
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=56.93 E-value=28 Score=26.37 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 264 ~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
.++.++++||.+-..+...+..|...|+....+.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 56778999999988888999999999997554446643
No 375
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=56.90 E-value=5.3 Score=42.26 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
.|.-+++.|++|+|||...+--+...... .|.++++++-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc
Confidence 34568999999999998655333322221 25668888753
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.88 E-value=9.7 Score=37.37 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
+.-+.+.||+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345778999999999843
No 377
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.82 E-value=4.8 Score=38.01 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il--~g~dvl~~a~TGSGKT~a~ 77 (569)
..-+|++++-.+.....+...-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 445789987777776666542110 0 0112222221 1245999999999999744
No 378
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=56.74 E-value=13 Score=40.85 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=45.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEc--------CCCHHHHHHHH----c-CCCCEEEECcHHHHHHH
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL----A-QNPDIIIATPGRLMHHL 158 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~g--------g~~~~~~~~~l----~-~~~~IiV~Tp~rl~~~l 158 (569)
.+.++||.++++.-+..+.+.++..+...++++..++| +.+..++...+ . +..+|+|+|. ..
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 35679999999999999999998866545577777765 55544433222 2 4678999993 22
Q ss_pred hhcCCCCCCCeeEEEEeCC
Q 008345 159 SEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 159 ~~~~~~~l~~l~~iViDEa 177 (569)
. ..+++.++.+||.-+.
T Consensus 472 ~--~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 D--EGIDIAQCNLVILYEY 488 (696)
T ss_dssp C--CC---CCCSEEEEESC
T ss_pred h--cCCcCccCCEEEEeCC
Confidence 2 3578888998886443
No 379
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=56.67 E-value=4.8 Score=36.47 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+++.|+.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998544
No 380
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=56.38 E-value=6 Score=37.71 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.8
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~l 78 (569)
+.|..+++.|++|||||.+.-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348899999999999998644
No 381
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.25 E-value=5.7 Score=35.49 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+++.|++|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999998544
No 382
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=56.25 E-value=6.9 Score=43.43 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 008345 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (569)
Q Consensus 53 ~i~~il~g~d--vl~~a~TGSGKT~a~ 77 (569)
.+..++.|.+ ++..|+||||||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788877 677899999999864
No 383
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=56.22 E-value=4.7 Score=36.59 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 008345 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 46 ~t~iQ~~~i~~il~g~dvl~~a~TGSGKT~a~l 78 (569)
.+..++..+ ....|.-+++.|+.|||||...-
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHH
Confidence 445555433 12346668899999999998543
No 384
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.17 E-value=4.9 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 385
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=56.08 E-value=5.4 Score=34.57 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 008345 62 DVVAMARTGSGKTAA 76 (569)
Q Consensus 62 dvl~~a~TGSGKT~a 76 (569)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999985
No 386
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.89 E-value=3.9 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=11.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~ 77 (569)
.|.-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4666889999999999854
No 387
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=55.81 E-value=7.6 Score=38.33 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=22.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 63 vl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
+++.|+.|||||...- .+.... .+.++.||.|+
T Consensus 7 ~~i~G~~GaGKTTll~-----~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR-----HILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHH-----HHHHSC--CCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHH-----HHHhhc--CCCcEEEEEec
Confidence 6789999999998433 333221 35678888884
No 388
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=55.47 E-value=11 Score=37.86 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|.-+++.|++|||||...+..+.... . .|..++++.-.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~-~----~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ-A----AGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-H----TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-h----CCCeEEEEECC
Confidence 45689999999999986553333222 2 24567877744
No 389
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.39 E-value=8.6 Score=38.42 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=25.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcC-CCCCeEEEEEcCcH
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTR 103 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~-~~~g~~~Lil~Ptr 103 (569)
.-+++.|++|||||...+-.+........ ...+.+++++.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44789999999999865533322111100 01245688887544
No 390
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.36 E-value=11 Score=37.88 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCc
Q 008345 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Pt 102 (569)
|+-+++.|++|+|||...+-.+... .. .|.+++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~-~~----~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAA-QR----EGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH-HH----TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH----CCCeEEEEeCC
Confidence 4668999999999998665333332 22 24568888763
No 391
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.26 E-value=5.3 Score=41.65 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.||+|+|||...-
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999998654
No 392
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=55.07 E-value=27 Score=30.31 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 008345 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (569)
Q Consensus 251 k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~arGl 330 (569)
+.....+++.+....+.+++|.|.+...++.+-+.|-...-....=|+-..... .....|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------RGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------TTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------CCCCCEEEeCCCCC---
Confidence 556677788888888999999999999999999999876544444444221110 23567999875321
Q ss_pred CCCCCCEEEEcCCC
Q 008345 331 DIPLLDNVINWDFP 344 (569)
Q Consensus 331 Dip~v~~VI~~d~p 344 (569)
.-+.-+++||.+.-
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 12245789998753
No 393
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=54.98 E-value=5.2 Score=40.45 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
-+++.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4779999999999865
No 394
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=54.96 E-value=15 Score=29.50 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.4
Q ss_pred hcCCCCcEEEEEcChhhHHHHHHHHHHCCCC-ceeecCCC
Q 008345 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDM 300 (569)
Q Consensus 262 ~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~l 300 (569)
.+.++.+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3566788999999988899999999999996 66777774
No 395
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=54.94 E-value=5.9 Score=34.63 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+.+++.|..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999998654
No 396
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=54.83 E-value=12 Score=40.99 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=48.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~i 172 (569)
+.++||.+||++-+.++++.++.. ++.+..++|+.+..+. ...+.+|+|+|. .+.. .++++ +++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~V 460 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDSV 460 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcEE
Confidence 457999999999999988888764 5889999999876642 235669999994 3332 35554 7766
Q ss_pred E
Q 008345 173 V 173 (569)
Q Consensus 173 V 173 (569)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=54.50 E-value=33 Score=41.78 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=33.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhc
Q 008345 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~ 117 (569)
+-+.+.||.|||||...+ +++..... .|..++++.+..+|.... ++.++
T Consensus 1432 ~~iei~g~~~sGkttl~~-~~~a~~~~----~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTL-QVIAAAQR----EGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp SEEEEECSTTSSHHHHHH-HHHHHHHH----TTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CEEEEEcCCCCCHHHHHH-HHHHHHHh----cCCeEEEEecCCCCCHHH---HHHcC
Confidence 568999999999998765 33333332 366799999887776553 45554
No 398
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=54.37 E-value=39 Score=37.16 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=53.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhccc--------------------------------CCCeEEEEEcCCCHHHHHHHH
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRY--------------------------------TDLRISLLVGGDSMESQFEEL 140 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~--------------------------------~~l~~~~~~gg~~~~~~~~~l 140 (569)
+.++||.+|++.-+..+...+...... ....+..++||.+.+++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999988887764321 013488899998877655433
Q ss_pred c----CCCCEEEECcHHHHHHHhhcCCCCCCCeeEEEEe
Q 008345 141 A----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (569)
Q Consensus 141 ~----~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~iViD 175 (569)
. +...|+|+|. .+.. .+++..+.+||-+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAA--GVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGG--SSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHhc--ccCCCceEEEEeC
Confidence 2 5788999994 3332 5788888876643
No 399
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=54.35 E-value=63 Score=31.87 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=50.8
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEeccc------cccCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA------ARGIDIPL 334 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~----~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv~------arGlDip~ 334 (569)
.+.++||.++++.-+..+.+.+.. .++.+..++|+.+.......+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888877765 4678888999988766554433 46799999321 22455667
Q ss_pred CCEEEE
Q 008345 335 LDNVIN 340 (569)
Q Consensus 335 v~~VI~ 340 (569)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777773
No 400
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=54.28 E-value=5.6 Score=36.39 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 401
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.15 E-value=6.3 Score=34.72 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998654
No 402
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=54.10 E-value=5.7 Score=36.56 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+.+.|++|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 403
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=54.06 E-value=10 Score=34.64 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=45.1
Q ss_pred hhhHHHH-HHHHHHHhcC--CCCcEEEEEcChhhHHHHHHHHHHC--------CCCceeecCCCCHHHHHHHHHHHhcCC
Q 008345 248 QEEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARK 316 (569)
Q Consensus 248 ~~~k~~~-L~~ll~~~~~--~~~~~IIF~~t~~~~~~l~~~L~~~--------~~~~~~i~g~l~~~~R~~~l~~F~~g~ 316 (569)
...|... ++-++..... .+.++||.++|+..+..+.+.+... ++.+..++|+.+...... .+ ...
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~ 126 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQ 126 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSC
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCC
Confidence 3456554 3333333222 3568999999999998888776543 567778888865433211 11 245
Q ss_pred ceEEEEec
Q 008345 317 TMFLIVTD 324 (569)
Q Consensus 317 ~~ILV~Td 324 (569)
.+|+|+|.
T Consensus 127 ~~Iiv~Tp 134 (219)
T 1q0u_A 127 PHIVIGTP 134 (219)
T ss_dssp CSEEEECH
T ss_pred CCEEEeCH
Confidence 78999984
No 404
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.03 E-value=5.4 Score=43.86 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=50.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHh--cccCCCeEEEEEcC--------CCHHHHHHHHc----CCCCEEEECcHHHHHHH
Q 008345 93 GVRALILSPTRDLALQTLKFTKEL--GRYTDLRISLLVGG--------DSMESQFEELA----QNPDIIIATPGRLMHHL 158 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~--~~~~~l~~~~~~gg--------~~~~~~~~~l~----~~~~IiV~Tp~rl~~~l 158 (569)
+.++||.++++..+..+.+.+... ....|+++..++|+ .+..++...+. +..+|+|+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 567999999999999999888764 12236888899998 66665544332 4678999994 22
Q ss_pred hhcCCCCCCCeeEEEE
Q 008345 159 SEVEDMSLKSVEYVVF 174 (569)
Q Consensus 159 ~~~~~~~l~~l~~iVi 174 (569)
. ..+++.++.+||.
T Consensus 475 ~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 E--EGLDIKECNIVIR 488 (699)
T ss_dssp C--TTSCCCSCCCCEE
T ss_pred c--cCCccccCCEEEE
Confidence 2 3588888888874
No 405
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=53.88 E-value=5.6 Score=36.24 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
+.-+.+.|++|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 444778999999999854
No 406
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.85 E-value=6 Score=35.44 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
.+.+.||.|||||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999843
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.78 E-value=6.5 Score=35.22 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|++|||||...-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5668999999999998543
No 408
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=53.69 E-value=10 Score=37.20 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
-+.+.|++|||||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999844
No 409
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.60 E-value=42 Score=33.54 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccc-ccCCCCC
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPL 334 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----v~a-rGlDip~ 334 (569)
.+.++||.++|+..+..+.+.+... +..+..++|+.+.... ......+..+|+|+|. .+. ..++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999998888877653 5667777777664443 3455668889999993 222 2356667
Q ss_pred CCEEEE
Q 008345 335 LDNVIN 340 (569)
Q Consensus 335 v~~VI~ 340 (569)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
No 410
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=53.58 E-value=6.1 Score=34.52 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+-+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 411
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.32 E-value=5.1 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 008345 60 GADVVAMARTGSGKTAAF 77 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~ 77 (569)
|.-+.+.|++|||||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445778999999999843
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=53.19 E-value=6 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4688999999999843
No 413
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.02 E-value=5.3 Score=38.84 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-++++|++|||||...-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998544
No 414
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=52.83 E-value=12 Score=43.87 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhcCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEe-----
Q 008345 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT----- 323 (569)
Q Consensus 249 ~~k~~~L~~ll~~~~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~T----- 323 (569)
..|.......+...+..+.++||.++|+.-+......|....-.+..++|+.+ .+++.+|+|+|
T Consensus 210 SGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~ 278 (1108)
T 3l9o_A 210 AGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILR 278 (1108)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHH
Confidence 34554444444444456789999999999999999999886668888999876 34678999999
Q ss_pred ccccccCC-CCCCCEEE
Q 008345 324 DVAARGID-IPLLDNVI 339 (569)
Q Consensus 324 dv~arGlD-ip~v~~VI 339 (569)
+.+.+|-. +.++.+||
T Consensus 279 ~~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 279 SMLYRGSEVMREVAWVI 295 (1108)
T ss_dssp HHHHHCSSHHHHEEEEE
T ss_pred HHHHcCccccccCCEEE
Confidence 45555433 55667776
No 415
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=52.78 E-value=2.7 Score=38.43 Aligned_cols=20 Identities=25% Similarity=0.026 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+.+.|++|||||...-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34557899999999998543
No 416
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=52.78 E-value=24 Score=34.90 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 008345 63 VVAMARTGSGKTAAF 77 (569)
Q Consensus 63 vl~~a~TGSGKT~a~ 77 (569)
+.+.|++|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 668999999999853
No 417
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.75 E-value=6 Score=35.12 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|||||...-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998544
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=52.68 E-value=6.2 Score=36.14 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998654
No 419
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=52.61 E-value=8.1 Score=31.15 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.6
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCC
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l 300 (569)
++++.+++++|.+-......+..|...|+....+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 45678899999998888999999999999988887774
No 420
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.60 E-value=22 Score=40.76 Aligned_cols=79 Identities=23% Similarity=0.224 Sum_probs=41.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhcccCCCe--------EEEEEcCCCHHHHHHHH----c-CCCCEEEECcHHHHHHH
Q 008345 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLR--------ISLLVGGDSMESQFEEL----A-QNPDIIIATPGRLMHHL 158 (569)
Q Consensus 92 ~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~--------~~~~~gg~~~~~~~~~l----~-~~~~IiV~Tp~rl~~~l 158 (569)
.+.++||.++++..+..+.+.+.......+++ ...++|+.+..++...+ . +..+|+|+|. .+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 46789999999999999999998753322333 33445555544433322 2 4578999994 23
Q ss_pred hhcCCCCCCCeeEEEEeCC
Q 008345 159 SEVEDMSLKSVEYVVFDEA 177 (569)
Q Consensus 159 ~~~~~~~l~~l~~iViDEa 177 (569)
. ..+++..+++||.=+.
T Consensus 705 ~--eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 D--EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -------CCCCSEEEEESC
T ss_pred h--cCCcchhCCEEEEeCC
Confidence 2 3578888998887544
No 421
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=52.58 E-value=3.3 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999998544
No 422
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=52.54 E-value=7.1 Score=35.18 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+++.|+.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35668999999999998543
No 423
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.28 E-value=7.3 Score=34.54 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+++.|++|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348899999999998654
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=52.28 E-value=6.2 Score=36.56 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
..-+++.|++|||||...-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3568999999999998543
No 425
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=52.24 E-value=19 Score=34.48 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH---cC--C
Q 008345 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL---AQ--N 143 (569)
Q Consensus 69 TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l---~~--~ 143 (569)
..|||..+ +.-++..+.. .+.++||.+.++..+..+...+... .++.+..++|+.+..+....+ .. .
T Consensus 93 ~~s~K~~~-L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred ccCHHHHH-HHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 45677654 3334433332 3568999999999888888777652 146778889988765543322 22 3
Q ss_pred CC-EEEECcHHHHHHHhhcCCCCCCCeeEEEEeCCC
Q 008345 144 PD-IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (569)
Q Consensus 144 ~~-IiV~Tp~rl~~~l~~~~~~~l~~l~~iViDEah 178 (569)
.. ++++|. .. ...+++...+.||+=+..
T Consensus 165 ~~v~L~st~-~~------g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 165 VKFIVLSVK-AG------GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CCEEEEECC-TT------CCCCCCTTCSEEEECSCC
T ss_pred CCEEEEehh-hh------cCCcCcccCCEEEEECCC
Confidence 45 455553 21 135777778777765443
No 426
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=52.24 E-value=34 Score=38.33 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=41.8
Q ss_pred CCCcEEEEEcChhhHHHHHHHH----HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L----~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (569)
.+.+++|.++|+.-|...++.+ ...|+.+..++|+++...|.... .++|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 4678999999998887665544 45689999999999976554332 378999995
No 427
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=52.23 E-value=6.3 Score=37.87 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q 008345 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 21 ~~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~~~i~~il--~g~dvl~~a~TGSGKT~a~ 77 (569)
..-+|+++.-.+.....+...-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456788887777777766543110 0 0012222211 1245999999999999854
No 428
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=51.93 E-value=13 Score=37.49 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHhhhcCCCCCeEEEEEcCcH
Q 008345 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (569)
Q Consensus 53 ~i~~il~------g~dvl~~a~TGSGKT~a~lip~l~~l~~~~~~~g~~~Lil~Ptr 103 (569)
.+..++. |.-+++.|++|+|||...+- +...+.. .|..++++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~-la~~~~~----~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALA-IVAQAQK----AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHH-HHHHHHH----TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHH-HHHHHHH----CCCeEEEEECCC
Confidence 4555554 35688999999999975543 3333322 245688887543
No 429
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=51.84 E-value=7.3 Score=35.82 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.|++|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998544
No 430
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.69 E-value=6.7 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999998543
No 431
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=51.67 E-value=6.4 Score=34.85 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~ 77 (569)
.|.-+++.|+.|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999854
No 432
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=51.57 E-value=19 Score=37.95 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=46.7
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCC
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AARG-I-DIPL 334 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~arG-l-Dip~ 334 (569)
+.++||.++|+.-+..+...+... ++.+..++|+.+...+...+. ...+|+|+|.- +..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999998888877777654 889999999986554432221 24789999932 2222 3 6777
Q ss_pred CCEEEE
Q 008345 335 LDNVIN 340 (569)
Q Consensus 335 v~~VI~ 340 (569)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 433
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=51.55 E-value=6 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+++.|+.|||||...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34568899999999998543
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=51.39 E-value=6 Score=37.21 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 356688999999999983
No 435
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=51.33 E-value=6.5 Score=37.93 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=27.7
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHHh--cCCcEEEEcCCCchHHHHH
Q 008345 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLIL--SGADVVAMARTGSGKTAAF 77 (569)
Q Consensus 22 ~~~f~~l~l~~~~~~~l~~~g~~~~t~iQ~-~~i~~il--~g~dvl~~a~TGSGKT~a~ 77 (569)
.-+|++++--+.+.+.|.+.= ..|+.. .++..+- -.+.+++.||+|+|||...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 457888887777777775421 222221 2222211 1244999999999999843
No 436
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.14 E-value=7 Score=33.97 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998544
No 437
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.02 E-value=6.8 Score=35.45 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+.+.|+.|||||...-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999998543
No 438
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.95 E-value=7 Score=35.32 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+++.|++|||||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998644
No 439
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=50.79 E-value=6.9 Score=35.33 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|+.|||||...-
T Consensus 17 ~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 440
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=50.66 E-value=7 Score=35.08 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|++|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37899999999998543
No 441
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=50.55 E-value=7 Score=35.47 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+.+.|+.|||||.+.-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998543
No 442
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=50.54 E-value=24 Score=39.56 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=46.2
Q ss_pred CCcEEEEEcChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-C-CCCC
Q 008345 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AARG-I-DIPL 334 (569)
Q Consensus 266 ~~~~IIF~~t~~~~~~l~~~L~~~----~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----~arG-l-Dip~ 334 (569)
+.++||.|+|+..+..+...+... ++.+..+||+.+...+...+ .+..+|+|+|.- +.++ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV----IEDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH----HHTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh----hCCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999998888877766654 89999999998665543222 135789999932 2222 3 5666
Q ss_pred CCEEE
Q 008345 335 LDNVI 339 (569)
Q Consensus 335 v~~VI 339 (569)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 443
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.18 E-value=6.9 Score=36.05 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
..+++.|++|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999998544
No 444
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=49.89 E-value=20 Score=41.37 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCCCCC-C-CHHHHHHHHHCCCC--CC--hHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHH
Q 008345 23 GGFESLN-L-SPNVFRAIKRKGYK--VP--TPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 23 ~~f~~l~-l-~~~~~~~l~~~g~~--~~--t~iQ~~~i~~il~-g--~dvl~~a~TGSGKT~a~l 78 (569)
++|..++ + ++.+++........ .| +.+=..|+..++. + +.+|+.|.+|||||.+.=
T Consensus 98 NPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 98 NPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp CCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 6888885 4 88888888655433 23 3344566665554 3 459999999999998764
No 445
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.65 E-value=55 Score=25.81 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=37.6
Q ss_pred HHHHhcCCCCcEEEEE------cChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHH
Q 008345 258 MIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312 (569)
Q Consensus 258 ll~~~~~~~~~~IIF~------~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~~F 312 (569)
.+.+.+. ..+++||. ++|..|..+...|...++....+.-..+...+......+
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH
Confidence 3344333 34788887 688999999999999988877776555666555554444
No 446
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=49.62 E-value=7.9 Score=36.05 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.|++|||||...-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999998544
No 447
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=49.42 E-value=7 Score=39.50 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q 008345 62 DVVAMARTGSGKTAA 76 (569)
Q Consensus 62 dvl~~a~TGSGKT~a 76 (569)
-.++.|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368999999999985
No 448
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=49.21 E-value=42 Score=36.83 Aligned_cols=73 Identities=14% Similarity=0.154 Sum_probs=53.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHH---HHHHHc---CCCCEEEECcHHHHHHHhhcCCCCCCCe
Q 008345 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES---QFEELA---QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (569)
Q Consensus 96 ~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~---~~~~l~---~~~~IiV~Tp~rl~~~l~~~~~~~l~~l 169 (569)
.+|+++++.-+.++.+.+... ++.+..++|+.+..+ +..... +..+|+|||. .+. ..+++ ++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 466799998888888877764 578999999998773 334444 4579999995 333 25788 89
Q ss_pred eEEEEeCCCcc
Q 008345 170 EYVVFDEADCL 180 (569)
Q Consensus 170 ~~iViDEah~l 180 (569)
.+||+-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998877654
No 449
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=48.92 E-value=4.8 Score=39.90 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.|++|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998543
No 450
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=48.70 E-value=68 Score=25.62 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCCcEEEEEc------ChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHH
Q 008345 256 LYMIREHISSDQQTLIFVS------TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (569)
Q Consensus 256 ~~ll~~~~~~~~~~IIF~~------t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~ 310 (569)
...+.+.+ ...+++||.. .+..|.....+|...|+....++=..+...+....+
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 34444444 3568999987 599999999999999988776654445555554443
No 451
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=48.68 E-value=7.8 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998543
No 452
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.58 E-value=7.8 Score=36.38 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|+.|||||...-
T Consensus 27 ~~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 453
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.51 E-value=63 Score=26.03 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCcEEEEE------cChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHH
Q 008345 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (569)
Q Consensus 257 ~ll~~~~~~~~~~IIF~------~t~~~~~~l~~~L~~~~~~~~~i~g~l~~~~R~~~l~ 310 (569)
..+.+.+ ...+++||. ++|..|.....+|...|+....+.=..+...+....+
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 3344443 357899998 6899999999999999988776655556666555433
No 454
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=48.42 E-value=7.1 Score=38.67 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+.+.|++|+|||....
T Consensus 108 I~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998654
No 455
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.34 E-value=7.2 Score=35.79 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
|.-+.+.||+|||||....
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998544
No 456
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.32 E-value=13 Score=30.02 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=33.3
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
+.++.++++||.+-..+...+..|...|+.+..+.|++.
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 356788999999988899999999999998888888743
No 457
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=48.31 E-value=7.2 Score=36.72 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356688999999999984
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=48.16 E-value=8.1 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.||+||||++..-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998544
No 459
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=48.14 E-value=7.3 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999854
No 460
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=48.03 E-value=26 Score=28.94 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCC-CcEEEEE-cChhhHHHHHHHHHHCCCCceeecCCCC
Q 008345 255 LLYMIREHISSD-QQTLIFV-STKHHVEFLNVLFREEGLEPSVCYGDMD 301 (569)
Q Consensus 255 L~~ll~~~~~~~-~~~IIF~-~t~~~~~~l~~~L~~~~~~~~~i~g~l~ 301 (569)
+...+... .++ .+++||| .+-..+...+..|...|+.+..+.|++.
T Consensus 78 ~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 78 IYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33334332 345 7899999 5777788899999999998888888864
No 461
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.00 E-value=9.5 Score=34.53 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCeeEEEEeCCCcc--CCCChHHHHHHHHHhcCCCCcEEEEEecCC
Q 008345 166 LKSVEYVVFDEADCL--FGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (569)
Q Consensus 166 l~~l~~iViDEah~l--~~~~f~~~l~~i~~~~~~~~q~ll~SAT~~ 210 (569)
..+.+++|+||+..+ .+..|.+.+.+++.. ...+++.++|.|
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 456789999998877 344577777777663 233566677753
No 462
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=47.86 E-value=8.7 Score=34.82 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35668999999999998543
No 463
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=47.72 E-value=14 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+.+.|++|||||...-
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37789999999998543
No 464
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=47.71 E-value=11 Score=35.42 Aligned_cols=17 Identities=41% Similarity=0.337 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.+..|+|||....
T Consensus 16 i~~~~GkgGvGKTTl~~ 32 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTG 32 (262)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHH
Confidence 37889999999998655
No 465
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=47.61 E-value=8 Score=35.38 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
.+++.|++|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998544
No 466
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.51 E-value=8.3 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
.-+++.|++|||||...-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 358899999999998543
No 467
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.48 E-value=8 Score=35.85 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 468
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.43 E-value=8.5 Score=34.36 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.5
Q ss_pred EEEEcCCCchHHHHHH
Q 008345 63 VVAMARTGSGKTAAFL 78 (569)
Q Consensus 63 vl~~a~TGSGKT~a~l 78 (569)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998544
No 469
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=47.20 E-value=9.1 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 008345 59 SGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a~l 78 (569)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998543
No 470
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.02 E-value=8.4 Score=34.57 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+.+.|++|||||.+.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 471
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=46.98 E-value=9.9 Score=37.36 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999984
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.54 E-value=12 Score=39.25 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4579999999999998644
No 473
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.51 E-value=11 Score=35.45 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
...+++.|+.|||||...-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999998654
No 474
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=46.22 E-value=13 Score=29.47 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=32.2
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCC
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l 300 (569)
+.++.++++||.+-..+...+..|...|+.+..+.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 34678899999998889999999999999877777774
No 475
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=46.10 E-value=7 Score=34.48 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=11.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998654
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=45.87 E-value=10 Score=34.86 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+..+++.|++|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3568999999999998544
No 477
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.76 E-value=8.3 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 478
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=45.76 E-value=23 Score=28.32 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=32.5
Q ss_pred cCCCCcEEEEEcChhhHHHHHHHHHHCCCC-ceeecCCCC
Q 008345 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (569)
Q Consensus 263 ~~~~~~~IIF~~t~~~~~~l~~~L~~~~~~-~~~i~g~l~ 301 (569)
+.++.+++|||.+-..+...+..|...|+. +..+.|++.
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 466789999999988889999999999996 667778753
No 479
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=45.68 E-value=9.3 Score=35.34 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998544
No 480
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=45.64 E-value=8.2 Score=37.34 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356688999999999984
No 481
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=45.64 E-value=8.4 Score=36.01 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 366688999999999984
No 482
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=45.55 E-value=9.4 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 008345 61 ADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 61 ~dvl~~a~TGSGKT~a~l 78 (569)
+-+++.||+||||++..-
T Consensus 30 kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp EEEEEECCTTCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 447889999999998544
No 483
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=45.52 E-value=9.3 Score=34.65 Aligned_cols=17 Identities=24% Similarity=-0.013 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+.+.|+.|||||...-
T Consensus 24 ~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998543
No 484
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=45.25 E-value=4.5 Score=36.88 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 008345 63 VVAMARTGSGKTAAF 77 (569)
Q Consensus 63 vl~~a~TGSGKT~a~ 77 (569)
+++.|+.|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999844
No 485
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=45.24 E-value=8.4 Score=36.52 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 366688999999999984
No 486
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=45.12 E-value=57 Score=36.56 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=50.1
Q ss_pred CCCcEEEEEcChhhHHHHHHHH----HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEEec--c--------c---c
Q 008345 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--V--------A---A 327 (569)
Q Consensus 265 ~~~~~IIF~~t~~~~~~l~~~L----~~~~~~~~~i~g~l~~~~R~~~l~~F~~g~~~ILV~Td--v--------~---a 327 (569)
.+.+++|.++|+.-|...++.+ ...|+.+.+++|+++...|.... .++|+++|+ + + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 4678999999998887766554 44699999999999987665432 378999995 1 1 1
Q ss_pred ccCCCCCCCEEE
Q 008345 328 RGIDIPLLDNVI 339 (569)
Q Consensus 328 rGlDip~v~~VI 339 (569)
..++...+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235667777766
No 487
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=45.05 E-value=12 Score=29.65 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.8
Q ss_pred CCCCcEEEEEcChhhHHHHHHHHHHCCCCceeecCCC
Q 008345 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (569)
Q Consensus 264 ~~~~~~IIF~~t~~~~~~l~~~L~~~~~~~~~i~g~l 300 (569)
.++.++++||.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4677899999998888999999999999888887874
No 488
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=44.97 E-value=7.8 Score=38.14 Aligned_cols=17 Identities=24% Similarity=0.562 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q 008345 60 GADVVAMARTGSGKTAA 76 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a 76 (569)
|.-+.+.||+|||||..
T Consensus 80 Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TCEEEEESSSCHHHHHH
T ss_pred CCEEEEECCCCchHHHH
Confidence 56688999999999984
No 489
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=44.91 E-value=4.6 Score=42.23 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHH----cCCCCEEEECcHHHHHHHhhcCCCCCCC
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tp~rl~~~l~~~~~~~l~~ 168 (569)
+.++||.||++.-+..++..+... +..+..++|+.+..+....+ .+..+|+|||. .+. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~--~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc--cCCcccc
Confidence 457999999999988888777665 46788888887655443322 24678999993 333 2577888
Q ss_pred eeEEE
Q 008345 169 VEYVV 173 (569)
Q Consensus 169 l~~iV 173 (569)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88876
No 490
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.64 E-value=11 Score=35.76 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
+.-+.+.|++|||||...-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5568899999999998543
No 491
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=44.49 E-value=9.9 Score=34.78 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 008345 62 DVVAMARTGSGKTAAFL 78 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~l 78 (569)
-+++.|+.|||||.+.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 492
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=44.45 E-value=10 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 008345 60 GADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 60 g~dvl~~a~TGSGKT~a~l 78 (569)
.+.+++.||+|+|||...-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999998543
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=44.38 E-value=10 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
-.++.|++|||||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3688999999999854
No 494
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=43.96 E-value=13 Score=38.60 Aligned_cols=69 Identities=7% Similarity=-0.008 Sum_probs=45.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhcccCCCeEEEEEcCCCHHHHHHHHcCCCCEEEECcHHHHHHHhhcCCCCCCCeeEE
Q 008345 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (569)
Q Consensus 93 g~~~Lil~PtreLa~Q~~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tp~rl~~~l~~~~~~~l~~l~~i 172 (569)
+.++||.+|++.-+..+++.++.. ++.+..++|............+..+|+|+|. .+. ..+++.+ .+|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~-----v~~--~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISE--MGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS-----CC-----CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC-----hHH--hCeecCC-CEE
Confidence 457999999999999988888775 5788888886433222112234688999994 222 2466666 544
Q ss_pred E
Q 008345 173 V 173 (569)
Q Consensus 173 V 173 (569)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 4
No 495
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=43.91 E-value=8.9 Score=35.69 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356678999999999983
No 496
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=43.87 E-value=9.9 Score=33.94 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.9
Q ss_pred cEEEEcCCCchHHHH
Q 008345 62 DVVAMARTGSGKTAA 76 (569)
Q Consensus 62 dvl~~a~TGSGKT~a 76 (569)
-+++.|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 477899999999974
No 497
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=43.79 E-value=8 Score=36.51 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 355688999999999984
No 498
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=43.70 E-value=11 Score=34.70 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 008345 58 LSGADVVAMARTGSGKTAAFL 78 (569)
Q Consensus 58 l~g~dvl~~a~TGSGKT~a~l 78 (569)
+.|.-+++.|+.|||||...-
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHH
Confidence 456678999999999998543
No 499
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=43.56 E-value=10 Score=41.01 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHH
Q 008345 62 DVVAMARTGSGKTAAF 77 (569)
Q Consensus 62 dvl~~a~TGSGKT~a~ 77 (569)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999743
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=43.53 E-value=9.3 Score=36.70 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCchHHHH
Q 008345 59 SGADVVAMARTGSGKTAA 76 (569)
Q Consensus 59 ~g~dvl~~a~TGSGKT~a 76 (569)
.|.-+.+.||.|||||..
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 356688999999999984
Done!