BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008346
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 67/119 (56%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXXXXXXS 404
VP+F+ M + +L +C+ LKP L+ ++ +V+EGDP+ EM FI
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 405 VFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463
+ L GDF G+EL T ALDP SN+P S + ++T VEAFA+ D+L+ + Q+
Sbjct: 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 232 AVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 275
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 456 LRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 515
L+ + QY H+ H ++P D ++ I W R+ + G++ +E
Sbjct: 128 LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGH---IMVPWARHLGATVIGTVSTEE--- 181
Query: 516 QDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGL 552
KAE K T Y+TQ F V R + G+
Sbjct: 182 ---KAETARKLGCHHTINYSTQDFAEVVREITGGKGV 215
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXXXXXX 403
+VP FQ + + ILS++ L+ Y I+++G F I
Sbjct: 161 SVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNED 220
Query: 404 SVFKKYLSTGDFWGEE 419
VF + L GD++GE+
Sbjct: 221 PVFLRTLGKGDWFGEK 236
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 354 SILSEMCKCLKPVLYVQECCIVKEGD 379
S + E+ C+ PV Y ++ CI+KEGD
Sbjct: 53 SQIQEIVDCMYPVEYGKDSCIIKEGD 78
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 16 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 58
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 16 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 58
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 20 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 62
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 387
VP+FQ +G ++L E+ + L+ I + G+P MFF+
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 60
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 354 SILSEMCKCLKPVLYVQECCIVKEGD 379
S + E+ C+ PV Y ++ CI+KEGD
Sbjct: 37 SQIQEIVDCMYPVEYGKDSCIIKEGD 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,093,202
Number of Sequences: 62578
Number of extensions: 557803
Number of successful extensions: 1123
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 12
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)