Query 008346
Match_columns 569
No_of_seqs 454 out of 1585
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 22:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.2E-99 3E-104 844.8 26.5 459 40-550 64-617 (727)
2 KOG0501 K+-channel KCNQ [Inorg 100.0 1.5E-50 3.3E-55 427.0 19.2 359 41-463 205-658 (971)
3 PLN03192 Voltage-dependent pot 100.0 1.4E-47 3.1E-52 445.3 31.2 345 40-463 48-486 (823)
4 KOG0500 Cyclic nucleotide-gate 100.0 3.5E-46 7.7E-51 391.1 17.4 301 93-464 30-424 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.7E-44 3.6E-49 382.8 18.1 328 43-463 217-641 (815)
6 PRK09392 ftrB transcriptional 99.8 3E-17 6.5E-22 163.7 18.7 183 344-556 11-206 (236)
7 PRK11753 DNA-binding transcrip 99.7 1.6E-16 3.4E-21 155.3 20.6 183 349-560 6-206 (211)
8 PRK11161 fumarate/nitrate redu 99.7 4.1E-16 8.9E-21 155.3 20.0 185 346-560 19-222 (235)
9 PRK10402 DNA-binding transcrip 99.7 4.4E-16 9.4E-21 154.9 17.1 173 355-556 23-203 (226)
10 PRK09391 fixK transcriptional 99.6 6.7E-15 1.5E-19 146.9 17.4 165 358-554 33-211 (230)
11 TIGR03697 NtcA_cyano global ni 99.6 7.1E-15 1.5E-19 141.4 14.8 176 371-561 1-182 (193)
12 COG0664 Crp cAMP-binding prote 99.6 3.4E-14 7.4E-19 137.1 19.3 187 345-560 5-209 (214)
13 PRK13918 CRP/FNR family transc 99.6 3.2E-14 6.9E-19 138.2 16.3 175 362-561 5-188 (202)
14 cd00038 CAP_ED effector domain 99.4 6.6E-12 1.4E-16 108.0 13.1 106 347-463 1-107 (115)
15 smart00100 cNMP Cyclic nucleot 99.4 7E-12 1.5E-16 108.3 12.8 108 347-463 1-109 (120)
16 PF00027 cNMP_binding: Cyclic 99.3 2.8E-11 6.1E-16 101.1 11.7 87 366-463 2-89 (91)
17 KOG0614 cGMP-dependent protein 99.3 6.9E-12 1.5E-16 134.1 7.6 134 321-463 252-387 (732)
18 PLN02868 acyl-CoA thioesterase 99.2 6.9E-11 1.5E-15 128.2 13.4 106 344-463 12-118 (413)
19 KOG1113 cAMP-dependent protein 99.1 1.7E-10 3.6E-15 119.0 7.0 105 344-463 126-230 (368)
20 PF00520 Ion_trans: Ion transp 99.1 4.4E-10 9.5E-15 106.8 8.7 168 121-343 25-200 (200)
21 KOG0614 cGMP-dependent protein 99.0 2.3E-10 5E-15 122.7 4.3 105 344-463 158-262 (732)
22 COG2905 Predicted signal-trans 98.8 1.1E-07 2.4E-12 103.7 14.4 106 344-463 11-116 (610)
23 KOG3713 Voltage-gated K+ chann 98.6 6.6E-08 1.4E-12 104.1 8.5 46 297-342 380-425 (477)
24 KOG1113 cAMP-dependent protein 98.6 4.5E-08 9.8E-13 101.3 6.2 106 344-463 244-349 (368)
25 PF07885 Ion_trans_2: Ion chan 98.4 4.7E-07 1E-11 75.4 4.8 51 293-343 23-73 (79)
26 KOG1545 Voltage-gated shaker-l 98.0 2.1E-06 4.6E-11 89.0 1.8 41 298-338 397-437 (507)
27 KOG1419 Voltage-gated K+ chann 97.7 6.5E-05 1.4E-09 82.0 7.7 53 291-343 266-318 (654)
28 KOG2968 Predicted esterase of 97.6 4.3E-05 9.4E-10 87.1 3.1 98 356-464 501-599 (1158)
29 PRK10537 voltage-gated potassi 97.5 0.00013 2.8E-09 78.9 5.4 56 294-349 168-223 (393)
30 PF01007 IRK: Inward rectifier 97.5 0.00041 8.8E-09 73.5 8.8 51 293-343 83-135 (336)
31 KOG4390 Voltage-gated A-type K 97.4 2.2E-05 4.8E-10 82.1 -2.0 43 296-338 358-400 (632)
32 PF08412 Ion_trans_N: Ion tran 97.3 0.00011 2.3E-09 61.3 1.7 62 4-72 1-68 (77)
33 PRK11832 putative DNA-binding 97.2 0.022 4.8E-07 56.3 16.8 168 355-555 14-193 (207)
34 KOG2968 Predicted esterase of 96.4 0.01 2.2E-07 68.5 8.4 108 344-463 104-212 (1158)
35 PF04831 Popeye: Popeye protei 96.0 0.27 5.9E-06 46.2 14.4 104 350-463 14-119 (153)
36 KOG1418 Tandem pore domain K+ 96.0 0.0054 1.2E-07 65.5 3.7 49 295-343 116-164 (433)
37 KOG1420 Ca2+-activated K+ chan 95.8 0.0065 1.4E-07 66.8 3.1 52 292-343 286-344 (1103)
38 KOG3542 cAMP-regulated guanine 95.2 0.028 6E-07 63.0 5.7 105 344-463 285-391 (1283)
39 KOG3827 Inward rectifier K+ ch 92.5 0.54 1.2E-05 50.2 8.6 49 295-343 113-163 (400)
40 KOG3684 Ca2+-activated K+ chan 91.0 3.8 8.3E-05 44.9 13.2 52 292-343 285-336 (489)
41 KOG4404 Tandem pore domain K+ 88.7 0.12 2.6E-06 53.8 -0.2 40 294-333 80-119 (350)
42 PF00325 Crp: Bacterial regula 88.1 0.43 9.3E-06 33.1 2.2 29 524-552 3-32 (32)
43 PF07883 Cupin_2: Cupin domain 87.1 1.3 2.8E-05 35.0 5.0 45 366-417 3-48 (71)
44 KOG1418 Tandem pore domain K+ 85.0 0.23 5.1E-06 52.9 -0.5 47 294-340 242-296 (433)
45 KOG4404 Tandem pore domain K+ 82.9 0.82 1.8E-05 47.9 2.4 47 294-340 186-240 (350)
46 PF05899 Cupin_3: Protein of u 79.8 3.8 8.3E-05 33.6 5.0 43 367-417 13-55 (74)
47 PF13545 HTH_Crp_2: Crp-like h 76.1 1.9 4.2E-05 34.9 2.1 39 523-561 28-67 (76)
48 TIGR01610 phage_O_Nterm phage 69.2 7.3 0.00016 33.6 4.2 33 521-553 45-78 (95)
49 PRK13290 ectC L-ectoine syntha 65.5 39 0.00085 30.8 8.4 47 366-417 40-86 (125)
50 KOG3542 cAMP-regulated guanine 63.0 11 0.00023 43.3 4.9 88 344-454 41-128 (1283)
51 COG1917 Uncharacterized conser 60.6 19 0.00041 32.4 5.4 50 363-419 45-95 (131)
52 TIGR03037 anthran_nbaC 3-hydro 56.2 24 0.00053 33.6 5.5 67 380-463 47-113 (159)
53 PF12973 Cupin_7: ChrR Cupin-l 52.9 61 0.0013 27.3 7.0 64 362-450 25-88 (91)
54 COG0662 {ManC} Mannose-6-phosp 52.6 40 0.00086 30.5 6.2 48 362-416 37-85 (127)
55 PRK13264 3-hydroxyanthranilate 51.1 30 0.00064 33.6 5.2 68 379-463 52-119 (177)
56 cd00092 HTH_CRP helix_turn_hel 48.5 24 0.00053 27.3 3.6 33 522-554 24-57 (67)
57 smart00419 HTH_CRP helix_turn_ 43.1 25 0.00055 25.3 2.7 31 523-553 8-39 (48)
58 KOG2301 Voltage-gated Ca2+ cha 42.1 1.2E+02 0.0025 39.1 9.7 30 307-336 1063-1092(1592)
59 KOG2302 T-type voltage-gated C 40.9 23 0.0005 42.5 3.2 27 162-192 1220-1246(1956)
60 KOG3193 K+ channel subunit [In 40.9 7.7 0.00017 43.3 -0.5 33 295-327 218-250 (1087)
61 PF00612 IQ: IQ calmodulin-bin 40.7 35 0.00076 20.9 2.7 17 488-504 3-19 (21)
62 PRK15418 transcriptional regul 39.6 23 0.00049 37.5 2.7 31 523-553 29-60 (318)
63 smart00835 Cupin_1 Cupin. This 38.9 84 0.0018 28.8 6.2 54 363-418 32-87 (146)
64 COG3450 Predicted enzyme of th 34.9 1.1E+02 0.0023 27.8 5.9 44 366-417 50-93 (116)
65 COG3837 Uncharacterized conser 34.3 56 0.0012 31.1 4.1 39 374-419 57-95 (161)
66 PF13730 HTH_36: Helix-turn-he 33.2 45 0.00098 25.1 2.8 28 525-552 27-55 (55)
67 PF10011 DUF2254: Predicted me 32.5 1.2E+02 0.0025 32.8 6.9 53 291-343 97-149 (371)
68 PF07697 7TMR-HDED: 7TM-HD ext 31.8 26 0.00057 34.1 1.7 34 350-383 173-208 (222)
69 PF01325 Fe_dep_repress: Iron 31.1 52 0.0011 25.9 2.9 31 523-553 22-53 (60)
70 COG1654 BirA Biotin operon rep 31.0 47 0.001 28.0 2.7 28 523-550 19-47 (79)
71 PRK11171 hypothetical protein; 29.9 1.4E+02 0.003 30.7 6.6 49 362-417 185-234 (266)
72 PF01978 TrmB: Sugar-specific 28.8 44 0.00094 26.5 2.2 32 522-553 21-53 (68)
73 PRK11171 hypothetical protein; 28.5 1.3E+02 0.0028 30.9 6.1 47 364-417 64-112 (266)
74 PF13412 HTH_24: Winged helix- 27.7 63 0.0014 23.7 2.7 30 523-552 17-47 (48)
75 TIGR03404 bicupin_oxalic bicup 27.5 1.5E+02 0.0032 32.1 6.6 49 366-417 72-121 (367)
76 PF06249 EutQ: Ethanolamine ut 26.6 99 0.0022 29.3 4.4 30 380-416 94-123 (152)
77 COG3817 Predicted membrane pro 26.3 1E+02 0.0022 31.8 4.6 69 292-370 30-100 (313)
78 PRK09943 DNA-binding transcrip 25.0 1.3E+02 0.0029 28.7 5.2 32 379-417 126-157 (185)
79 PF07900 DUF1670: Protein of u 24.8 2.9E+02 0.0063 27.8 7.4 77 443-556 62-141 (220)
80 smart00345 HTH_GNTR helix_turn 24.5 61 0.0013 24.1 2.2 29 525-553 22-51 (60)
81 TIGR03214 ura-cupin putative a 23.9 1.4E+02 0.003 30.7 5.3 33 377-416 75-108 (260)
82 PRK04190 glucose-6-phosphate i 23.5 3.3E+02 0.0071 26.8 7.6 40 375-417 91-131 (191)
83 TIGR02451 anti_sig_ChrR anti-s 23.1 1.5E+02 0.0032 29.6 5.2 72 362-458 128-201 (215)
84 smart00015 IQ Short calmodulin 21.3 1.2E+02 0.0026 19.4 2.8 19 486-504 3-21 (26)
85 TIGR03404 bicupin_oxalic bicup 21.0 2.2E+02 0.0048 30.8 6.4 51 363-416 247-299 (367)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-99 Score=844.78 Aligned_cols=459 Identities=35% Similarity=0.635 Sum_probs=406.6
Q ss_pred ccCCeeecCCCch---HHHHHHHHHHHHhhccceeeeeeeecCCceeEEecccceeehheeccccceEEEe-----ee--
Q 008346 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (569)
Q Consensus 40 ~~~~~iidP~s~~---Wn~~~li~~i~~~~v~Plf~y~p~~~~~~~c~~~d~~~~~~~~~l~~~~D~~f~~-----f~-- 109 (569)
...++||||+|+| ||+++|++|+|++++||++||+|.++++..| +|..+...++++|+++|+||++ |+
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3446799999999 9999999999999999999999999999999 9999999999999999999998 66
Q ss_pred ----cCc-cccchHhhhhccccchh-cHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHH
Q 008346 110 ----SST-PHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 183 (569)
Q Consensus 110 ----~s~-v~~D~~~Ia~~~~Yl~s-F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~ 183 (569)
+++ ++.||++||+ |||++ |++|++|+||+||+++|.++ +........+.|..+.++||+|||+|++|++
T Consensus 142 yv~~~s~elV~dpk~IA~--rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~ 216 (727)
T KOG0498|consen 142 YVDPSSYELVDDPKKIAK--RYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLF 216 (727)
T ss_pred EECCCCceeeeCHHHHHH--HHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 8899999999 99999 99999999999999999877 1122233344788889999999999999999
Q ss_pred HHHHhhhchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCC
Q 008346 184 AVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCP 263 (569)
Q Consensus 184 ~~i~~~~g~~~~ta~~~a~~~L~~y~LasH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~ 263 (569)
++++|.+|++.+|||++++++|++|||++||+||+||++|++|.+.||+++|- .+|...+++|+
T Consensus 217 ~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw--~~~l~~~~~~~-------------- 280 (727)
T KOG0498|consen 217 ARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATW--LGSLGRLLSCY-------------- 280 (727)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc--ccccccccccC--------------
Confidence 99999999999999999999999999999999999999999999999987622 11110023332
Q ss_pred CcccCCCccccchhHHhhhcccccchhhHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 264 TMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 264 ~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
+..|+||+|.++ .||+||||||++||||+|||+++|++..|++|+|++|++|++|||++||||
T Consensus 281 -----~~~~~fg~~s~~------------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm 343 (727)
T KOG0498|consen 281 -----NLSFTFGIYSLA------------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM 343 (727)
T ss_pred -----cccccccchhHH------------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH
Confidence 234789987654 499999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------------------------------c
Q 008346 344 -------------------------------------------------------------------------------T 344 (569)
Q Consensus 344 -------------------------------------------------------------------------------k 344 (569)
+
T Consensus 344 t~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~ 423 (727)
T KOG0498|consen 344 TALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRK 423 (727)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhh
Confidence 8
Q ss_pred cccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhc
Q 008346 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA 424 (569)
Q Consensus 345 VplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wa 424 (569)
||+|++||+++|++||+++|+..|+|||+|++|||++++||||++|.+++.+++|| ++++++.|++||+|||+.++||
T Consensus 424 vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~ 501 (727)
T KOG0498|consen 424 VPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWC 501 (727)
T ss_pred CchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998866 4557899999999999888999
Q ss_pred CCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 008346 425 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 504 (569)
Q Consensus 425 ld~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~ 504 (569)
++. |+++||+|+|+||++.|+++||++++++| +++++++++|+||+||++||+|++|++|.+|++|.+|+.
T Consensus 502 ~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~ 572 (727)
T KOG0498|consen 502 LDL-------PQTRTVRALTYCELFRLSADDLKEVLQQF--RRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKG 572 (727)
T ss_pred hcC-------CCCceeehhhhhhHHhccHHHHHHHHHHh--HHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence 852 45899999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhhhhhhhhhcCCCchhhhhHHhhcHHHHHHHHHHHHcC
Q 008346 505 EGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNG 550 (569)
Q Consensus 505 ~~~~~~~e~r~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~~~~~ 550 (569)
.+.+...++.-.... .+.++.++++++.+|+++++|+++.++.+.
T Consensus 573 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 617 (727)
T KOG0498|consen 573 EEELALEEEESAIRG-DDRGSKSLLRAGILASRFAANGRPPLHTAA 617 (727)
T ss_pred cchhhhhcchhhhcc-ccccchhhhhcccccccccccCCCcccccc
Confidence 875555433211111 235667899999999999999999987763
No 2
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=426.97 Aligned_cols=359 Identities=18% Similarity=0.306 Sum_probs=283.5
Q ss_pred cCCeeecCCCch---HHHHHHHHHHHHhhccceeeeeeeecCCceeEEecccceeehheeccccceEEEe-----ee---
Q 008346 41 HINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS--- 109 (569)
Q Consensus 41 ~~~~iidP~s~~---Wn~~~li~~i~~~~v~Plf~y~p~~~~~~~c~~~d~~~~~~~~~l~~~~D~~f~~-----f~--- 109 (569)
...-||-....| |||++|++.+|.++++|....| .+.. .-.+.|.++|+++|++|++ |+
T Consensus 205 TpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaF--Knk~--------~~~vs~lvvDSiVDVIF~vDIvLNFHTTF 274 (971)
T KOG0501|consen 205 TPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAF--KNKQ--------RNNVSWLVVDSIVDVIFFVDIVLNFHTTF 274 (971)
T ss_pred CCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeee--cccc--------cCceeEEEecchhhhhhhhhhhhhcceee
Confidence 334577777788 9999999999999999975432 2211 1235688899999999998 66
Q ss_pred ---cCccccchHhhhhccccchh-cHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHHHH
Q 008346 110 ---SSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAV 185 (569)
Q Consensus 110 ---~s~v~~D~~~Ia~~~~Yl~s-F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~~~ 185 (569)
.++|+.||+.|++ +|||+ |+||++||||+|.+..+- +.+ ...-.....|| +.||+|+-|..++
T Consensus 275 VGPgGEVvsdPkvIRm--NYlKsWFvIDLLSCLPYDi~naF~---~~d-egI~SLFSaLK-------VVRLLRLGRVaRK 341 (971)
T KOG0501|consen 275 VGPGGEVVSDPKVIRM--NYLKSWFVIDLLSCLPYDIFNAFE---RDD-EGIGSLFSALK-------VVRLLRLGRVARK 341 (971)
T ss_pred ecCCCceecChhHHhH--HHHHHHHHHHHHhcccHHHHHHhh---ccc-ccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 6899999999999 99999 999999999999775532 211 12223345565 4588888888888
Q ss_pred HHhhhchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCCCc
Q 008346 186 AESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTM 265 (569)
Q Consensus 186 i~~~~g~~~~ta~~~a~~~L~~y~LasH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~~~ 265 (569)
+.++..| .-+..++.|++|+|++||++|+||.+|-.+. ..+..+....++|+.....
T Consensus 342 LD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kLa~-- 398 (971)
T KOG0501|consen 342 LDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKLAN-- 398 (971)
T ss_pred HHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHHHh--
Confidence 8775433 1123345667899999999999999994321 0111112345789886432
Q ss_pred ccCCCccccchhHHhhhccc-ccchhhHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc-
Q 008346 266 IQDTTMFNFGMFQEAIQSGM-VEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL- 343 (569)
Q Consensus 266 ~~~~~~f~~gi~~~a~~~~~-~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~- 343 (569)
.-+++|+|..-. .|. +.+++..+.|+.|+|++++.|||||+|++.|+++.|++|++++|++|.++||.++|||
T Consensus 399 -~~~tpY~~~~s~----~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vT 473 (971)
T KOG0501|consen 399 -DIGTPYNYNLSN----KGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVT 473 (971)
T ss_pred -hcCCCceeccCC----CceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 235677775211 122 2457788899999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------cc
Q 008346 344 ------------------------------------------------------------------------------TV 345 (569)
Q Consensus 344 ------------------------------------------------------------------------------kV 345 (569)
+-
T Consensus 474 TI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEH 553 (971)
T KOG0501|consen 474 TIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEH 553 (971)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccC
Confidence 56
Q ss_pred ccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 346 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 346 plF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
|-|+-.++.+|++++..++..++.|||.|++.||.+|.+.||++|++|+++.|+ .+++|+.||+||++.+ -
T Consensus 554 paFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~FW--K- 624 (971)
T KOG0501|consen 554 PAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDEFW--K- 624 (971)
T ss_pred cceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhHHh--h-
Confidence 999999999999999999999999999999999999999999999999998654 3589999999999953 2
Q ss_pred CCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 426 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 426 d~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+ .....+.++|+|+|+|+++.|.+|.|.++++-|
T Consensus 625 ~----~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 625 E----NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred h----hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 1 123468899999999999999999999999988
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.4e-47 Score=445.30 Aligned_cols=345 Identities=18% Similarity=0.270 Sum_probs=266.7
Q ss_pred ccCCeeecCCCch---HHHHHHHHHHHHhhccceeeeeeeecCCceeEEecccceeehheeccccceEEEe-----ee--
Q 008346 40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS-- 109 (569)
Q Consensus 40 ~~~~~iidP~s~~---Wn~~~li~~i~~~~v~Plf~y~p~~~~~~~c~~~d~~~~~~~~~l~~~~D~~f~~-----f~-- 109 (569)
...++||+|.+++ ||.+++++++|++++.|+.+.+. +. .....+.+++.++|++|++ |+
T Consensus 48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~--~~---------~~~~~~~~~d~i~~~~F~iDi~l~f~~a 116 (823)
T PLN03192 48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL--NA---------SPKRGLEIADNVVDLFFAVDIVLTFFVA 116 (823)
T ss_pred ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee--CC---------CCCCCeeeHHHHHHHHHHHHHHhheeEE
Confidence 3557899999999 99999999999999999865442 11 1111245567788888887 33
Q ss_pred ---c--CccccchHhhhhccccchh-cHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHH
Q 008346 110 ---S--STPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY 183 (569)
Q Consensus 110 ---~--s~v~~D~~~Ia~~~~Yl~s-F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~ 183 (569)
+ ..++.||++|++ ||+|+ |++|++|++|++.+...+ +. ........++|++++ +.|+.|+.+++
T Consensus 117 y~d~~~~~lV~d~~~I~~--~Yl~~~f~~Dlis~lP~~~i~~~~--~~--~~~~~~~~~~l~llr----l~Rl~ri~~~~ 186 (823)
T PLN03192 117 YIDPRTQLLVRDRKKIAV--RYLSTWFLMDVASTIPFQALAYLI--TG--TVKLNLSYSLLGLLR----FWRLRRVKQLF 186 (823)
T ss_pred EEeCCCcEEEeCHHHHHH--HHHHHhHHHHHHHHhHHHHHHHHh--cC--CccchHHHHHHHHHH----HHHHHHHHHHH
Confidence 2 235699999999 99999 999999999999764321 11 111111223444433 34666666667
Q ss_pred HHHHhhhchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCC
Q 008346 184 AVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCP 263 (569)
Q Consensus 184 ~~i~~~~g~~~~ta~~~a~~~L~~y~LasH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~ 263 (569)
.++++...+ ...|...+..++..++++||+||+||+++-. + +..+.+|+...-+
T Consensus 187 ~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------------------~-----~~~~~~Wi~~~~~ 240 (823)
T PLN03192 187 TRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------------------Y-----PHQGKTWIGAVIP 240 (823)
T ss_pred HHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------c-----CCCCCchHHHhhh
Confidence 776664332 2334444333344456899999999999821 0 1134678753110
Q ss_pred CcccCCCccccchhHHhhhcccccchhhHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 264 TMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 264 ~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
+ ..+.+++.+|++|+||+++|||||||||++|.+..|++|+|++|++|+++||++||||
T Consensus 241 ---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i 299 (823)
T PLN03192 241 ---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNM 299 (823)
T ss_pred ---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1245789999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------cc
Q 008346 344 ------------------------------------------------------------------------------TV 345 (569)
Q Consensus 344 ------------------------------------------------------------------------------kV 345 (569)
++
T Consensus 300 ~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~ 379 (823)
T PLN03192 300 TNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKV 379 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhC
Confidence 78
Q ss_pred ccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 346 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 346 plF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
|+|++++++++.+|+.+++++.|.|||.|++|||+++++|||.+|+|++...+++++. .+..+++||+|||..+.
T Consensus 380 ~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~--~l~~l~~Gd~FGE~~~l--- 454 (823)
T PLN03192 380 YLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKER--VVGTLGCGDIFGEVGAL--- 454 (823)
T ss_pred cchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcce--eeEEccCCCEecchHHh---
Confidence 9999999999999999999999999999999999999999999999999876655543 35889999999999752
Q ss_pred CCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 426 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 426 d~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++++|++|.++|+++.|++++|.++++++
T Consensus 455 ~------~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~ 486 (823)
T PLN03192 455 C------CRPQSFTFRTKTLSQLLRLKTSTLIEAMQTR 486 (823)
T ss_pred c------CCCCCCeEEEcccEEEEEEEHHHHHHHHHHh
Confidence 1 2367899999999999999999999999999
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-46 Score=391.10 Aligned_cols=301 Identities=21% Similarity=0.337 Sum_probs=243.2
Q ss_pred ehheeccccceEEEe---ee-------cCccccchHhhhhccccchh--cHhhhhhcCChhhhhhheeecccCCCCcccc
Q 008346 93 IAISLRTIFDFFNII---YS-------SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPA 160 (569)
Q Consensus 93 ~~~~l~~~~D~~f~~---f~-------~s~v~~D~~~Ia~~~~Yl~s--F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~ 160 (569)
.|.++|+++|+.|++ +| .+..+.|.++.++ ||.+| |.+|++|.+|+|++++|. ++.
T Consensus 30 ~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~--hY~~s~~f~lD~l~liP~D~l~~~~------~~~---- 97 (536)
T KOG0500|consen 30 NWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRK--HYVHSTQFKLDVLSLIPLDLLLFKD------GSA---- 97 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHH--HHHHhhhhhhhhhhhcchhHHhhcC------Ccc----
Confidence 577889999999999 33 4556799999999 99999 999999999999998763 111
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHHHHhhhchhhHHhHHHH--HHHHHHHH-HHHHHHHHHHHHHhhhhhhHHHHhhhcc
Q 008346 161 MVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKS--ACCILIYL-LAAHVFGALWYFMAIERETECWKKACRE 237 (569)
Q Consensus 161 ~~~Lrli~l~q~lpRL~Ri~~l~~~i~~~~g~~~~ta~~~a--~~~L~~y~-LasH~~gc~WYll~i~r~~~cw~~~c~~ 237 (569)
...| +.||+|++|++..+.++.+ .|.|+++ +.+|++|. +..||.||++|++|..
T Consensus 98 -~~~r-------~nRllk~yRl~~F~~rTet---rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~------------ 154 (536)
T KOG0500|consen 98 -SLER-------LNRLLKIYRLFEFFDRTET---RTTYPNAFRISKLVHYCLILFHWNACLYFLISKA------------ 154 (536)
T ss_pred -hHHH-------HHHHHHHHHHHHHHHHhcc---ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHh------------
Confidence 1223 3566667777666666533 3445555 46777776 5899999999999931
Q ss_pred ccccccccccccccCCccccccccCCCcccCCCccccchhHHhhhcccccchhhHhHHHHHHHHHhhhccccCCCCCCCC
Q 008346 238 HTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTST 317 (569)
Q Consensus 238 ~~~C~~~~l~c~~~~~~~~W~~~~c~~~~~~~~~f~~gi~~~a~~~~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~ 317 (569)
. +.+.++|++.. .+|| . |+ +.. ..++.++|++|+||+..||||+|+-..|.
T Consensus 155 --------~----g~~~d~wvY~~--i~d~---~--~~--------~c~-~~n~~ReY~~S~YWStLTlTTiGe~P~P~- 205 (536)
T KOG0500|consen 155 --------I----GFTTDDWVYPK--INDP---E--FA--------TCD-AGNLTREYLYSLYWSTLTLTTIGEQPPPV- 205 (536)
T ss_pred --------c----CccccccccCC--ccCc---c--cc--------ccc-hhHHHHHHHHHHHHHhhhhhhccCCCCCC-
Confidence 1 23456798852 0011 1 11 011 24589999999999999999999866555
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhcCc------------------------------------------------------
Q 008346 318 HEGENLLASFIIIASLLLLLLVLGNL------------------------------------------------------ 343 (569)
Q Consensus 318 ~~~E~~faI~~mi~G~~lfA~lIGN~------------------------------------------------------ 343 (569)
+..|.+|.|+-.++|+++||.++|||
T Consensus 206 t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DE 285 (536)
T KOG0500|consen 206 TSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDE 285 (536)
T ss_pred cCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccH
Confidence 56899999999999999999999998
Q ss_pred -------------------------ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec
Q 008346 344 -------------------------TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN 398 (569)
Q Consensus 344 -------------------------kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d 398 (569)
||++|+++++.++.+++.+++|..|.|||+|+|+||.+.|||+|.+|+++++..|
T Consensus 286 eevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD 365 (536)
T KOG0500|consen 286 EEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD 365 (536)
T ss_pred HHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC
Confidence 8999999999999999999999999999999999999999999999999999887
Q ss_pred CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhh
Q 008346 399 GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYW 464 (569)
Q Consensus 399 gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~ 464 (569)
|++ ....+++|++|||.++.|.-. ..+..+||++|+.+.++++++|++||+.+++++||
T Consensus 366 g~t----~~~~L~~G~~FGEisIlni~g---~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP 424 (536)
T KOG0500|consen 366 GVT----VFVTLKAGSVFGEISILNIKG---NKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYP 424 (536)
T ss_pred CcE----EEEEecCCceeeeeEEEEEcC---cccCCcceeeeeeeccceeeEeeHHHHHHHHHhCC
Confidence 776 368899999999998755432 23456899999999999999999999999999995
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-44 Score=382.75 Aligned_cols=328 Identities=19% Similarity=0.274 Sum_probs=259.9
Q ss_pred CeeecCCC-ch---HHHHHHHHHHHHhhccceeeeeeeecCCceeEEecccceeehheeccccceEEEe----ee-----
Q 008346 43 NRIVDPRG-PF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII----YS----- 109 (569)
Q Consensus 43 ~~iidP~s-~~---Wn~~~li~~i~~~~v~Plf~y~p~~~~~~~c~~~d~~~~~~~~~l~~~~D~~f~~----f~----- 109 (569)
..-|||.+ ++ |-.++.++..++.+++||-..+|+...++. -.|.+.|+++|++|++ |+
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 46799999 66 888888888999999999999998865442 2367789999999998 33
Q ss_pred --cCccccchHhhhhccccchh--cHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHHHH
Q 008346 110 --SSTPHKHSRANAKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAV 185 (569)
Q Consensus 110 --~s~v~~D~~~Ia~~~~Yl~s--F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~~~ 185 (569)
.+..+.|.+..++ ||+++ |-+|++|.||+|++++.+. ...+++.++.||..-++.. ++.
T Consensus 288 vrgG~~ik~kndtrk--~Yl~sr~FklDllsiLPldllY~~~G-----~~p~wR~~R~lK~~sF~e~----------~~~ 350 (815)
T KOG0499|consen 288 VRGGDIIKDKNDTRK--HYLTSRKFKLDLLSILPLDLLYLFFG-----FNPMWRANRMLKYTSFFEF----------NHH 350 (815)
T ss_pred eeCceEEEechHHHH--HHHHhhhhhhhHHhhhhHHHHHHHhc-----cchhhhhhhHHHHHHHHHH----------HHH
Confidence 5667799999999 99999 9999999999999987542 2234444444443322221 122
Q ss_pred HHhhhchhhHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCCC
Q 008346 186 AESTSGILAQMKWVKSACCILIYLL-AAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPT 264 (569)
Q Consensus 186 i~~~~g~~~~ta~~~a~~~L~~y~L-asH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~~ 264 (569)
+++ +...+++--+..-.-||| ..|+.+|.+|..|- |- +.+.+.|+++.
T Consensus 351 Le~----i~s~~y~~RV~rT~~YmlyilHinacvYY~~Sa--------------------yq----glG~~rWVydg--- 399 (815)
T KOG0499|consen 351 LES----IMSKAYIYRVIRTTGYLLYILHINACVYYWASA--------------------YQ----GLGTTRWVYDG--- 399 (815)
T ss_pred HHH----HhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHh--------------------hc----ccccceeEEcC---
Confidence 221 112222222333334543 67999999999883 11 13467898741
Q ss_pred cccCCCccccchhHHhhhcccccchhhHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc-
Q 008346 265 MIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL- 343 (569)
Q Consensus 265 ~~~~~~~f~~gi~~~a~~~~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~- 343 (569)
....|+.|+||+..|++|+|.+. .|++..|++|..+..+.|++.||++||.|
T Consensus 400 --------------------------~Gn~YiRCyyfa~kt~~tiG~~P-~P~~~~E~Vf~~~~w~mGVFvFslliGQmR 452 (815)
T KOG0499|consen 400 --------------------------EGNEYIRCYYFAVKTLITIGGLP-EPQTLFEIVFQLLNWFMGVFVFSLLIGQMR 452 (815)
T ss_pred --------------------------CCCceeeehhhHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13479999999999999999654 55678999999999999999999999999
Q ss_pred ------------------------------------------------------------------------------cc
Q 008346 344 ------------------------------------------------------------------------------TV 345 (569)
Q Consensus 344 ------------------------------------------------------------------------------kV 345 (569)
||
T Consensus 453 Dvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKV 532 (815)
T KOG0499|consen 453 DVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKV 532 (815)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHH
Confidence 89
Q ss_pred ccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 346 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 346 plF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
.||+++|.+++..++.+++++.|.|||+||++||.+.|||+|..|.|.+...++|.. ++.+|.+|++|||++|. |.
T Consensus 533 qLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVFGEISLL-ai 608 (815)
T KOG0499|consen 533 QLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVFGEISLL-AI 608 (815)
T ss_pred HHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE---EEEEecccceeeeeeee-ee
Confidence 999999999999999999999999999999999999999999999999998765554 56899999999999874 32
Q ss_pred CCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 426 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 426 d~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
.+..+||++|+|...|.+|+|+++||.+++..|
T Consensus 609 -----gG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y 641 (815)
T KOG0499|consen 609 -----GGGNRRTANVVAHGFANLFVLDKKDLNEILVHY 641 (815)
T ss_pred -----cCCCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence 233479999999999999999999999999999
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.76 E-value=3e-17 Score=163.71 Aligned_cols=183 Identities=10% Similarity=0.085 Sum_probs=145.5
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+.|+|+.++++.++.+....+.+.|++|+.|+++||+++++|+|.+|.++++..++|+.. .+..+.+|++|||..+
T Consensus 11 ~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g~~~~-- 86 (236)
T PRK09392 11 NLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFILAAV-- 86 (236)
T ss_pred cCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhhhHHH--
Confidence 579999999999999999999999999999999999999999999999999876544333 4688999999999864
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
++ ..++..+++|+++|+++.+++++|++++.++ |....+....+...+++..++.
T Consensus 87 -~~------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~------------------p~l~~~~~~~l~~~~~~~~~~~ 141 (236)
T PRK09392 87 -VL------DAPYLMSARTLTRSRVLMIPAELVREAMSED------------------PGFMRAVVFELAGCYRGLVKSL 141 (236)
T ss_pred -hC------CCCCceEEEEcCceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2357889999999999999999999999999 5555555555555555555555
Q ss_pred hhhhhhhhhhhhhhh-----------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCc
Q 008346 504 LEGSLYAKENILQDQ-----------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~-----------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
......++++|+..- .... +.++.++|..++.+|. ++++++.++++|.. .++
T Consensus 142 ~~~~~~~~~~Rla~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl~-~~~ 206 (236)
T PRK09392 142 KNQKLRSSAERLANYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGVH-VDG 206 (236)
T ss_pred HHhhcCCHHHHHHHHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCeE-eeC
Confidence 544456666664221 1111 4667899999999999 99999999999964 443
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.74 E-value=1.6e-16 Score=155.32 Aligned_cols=183 Identities=12% Similarity=0.156 Sum_probs=136.5
Q ss_pred cCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCC
Q 008346 349 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 427 (569)
Q Consensus 349 ~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~ 427 (569)
+.+|++.++.+...++.+.|+||++|+++||+++.+|||++|.++++..+ +|++. .+..+++||+|||..+ +
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~---~-- 78 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGL---F-- 78 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehhh---c--
Confidence 46799999999999999999999999999999999999999999998754 45543 4578999999999854 1
Q ss_pred CCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhh-HHHHHHHHHHHHHHHHHhhh
Q 008346 428 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRT-SKACVIQAAWCRYKKRKLEG 506 (569)
Q Consensus 428 ~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~-~~~~~iq~a~rr~~~r~~~~ 506 (569)
.+.++++.+++|.++|+++.+++++|.+++.++ |.+.. +...+.+.. +...++....
T Consensus 79 ---~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l-~~~~~~~~~~ 136 (211)
T PRK11753 79 ---EEGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMALSAQMARRL-QNTSRKVGDL 136 (211)
T ss_pred ---cCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 122357789999999999999999999999998 33322 222222222 2223333333
Q ss_pred hhhhhhhhhhhh--------------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 507 SLYAKENILQDQ--------------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 507 ~~~~~e~r~~~~--------------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
.+.++++|+..- .... +.++.+||.-++++|. +.++|+.+++.|.+...+=.|.
T Consensus 137 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~~~i~ 206 (211)
T PRK11753 137 AFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHGKTIV 206 (211)
T ss_pred HhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 344455553110 0011 5788999999999999 9999999999999887664443
No 8
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.72 E-value=4.1e-16 Score=155.30 Aligned_cols=185 Identities=14% Similarity=0.083 Sum_probs=137.6
Q ss_pred ccccCCCHHHHHHHHhcCcc-EEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhh
Q 008346 346 PMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 346 plF~~ld~~~L~~L~~~lk~-~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+.|..+++++++.|....+. +.|+|||.|+++||+++++|+|.+|.++++..+ +|++.+ +....+||+||+..+
T Consensus 19 ~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~~~-- 94 (235)
T PRK11161 19 CIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFDAI-- 94 (235)
T ss_pred ccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccccc--
Confidence 44446999999999988865 679999999999999999999999999999864 566543 467899999998743
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
.+ + ++..+++|+++++++.+++++|++++.++ |.+..+....+....+...++.
T Consensus 95 -~~-----~--~~~~~~~a~~~~~i~~ip~~~f~~l~~~~------------------p~~~~~~~~~~~~~~~~~~~~~ 148 (235)
T PRK11161 95 -GS-----G--QHPSFAQALETSMVCEIPFETLDDLSGKM------------------PKLRQQIMRLMSGEIKGDQEMI 148 (235)
T ss_pred -cC-----C--CCcceEEEeccEEEEEEEHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 23458999999999999999999999998 4444443334333333334444
Q ss_pred hhhhhhhhhhhhhhh---------------hhh-cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 504 LEGSLYAKENILQDQ---------------KAE-AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~---------------~~~-~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
......++++|+..- ... -+.++.++|..+++||. +.+.|+.++++|.+...+=.|.
T Consensus 149 ~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~~~i~ 222 (235)
T PRK11161 149 LLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYIT 222 (235)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 333445556653211 111 25788999999999999 9999999999999887763333
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.70 E-value=4.4e-16 Score=154.91 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=129.2
Q ss_pred HHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCC
Q 008346 355 ILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 433 (569)
Q Consensus 355 ~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~ 433 (569)
+..+|....+.+.|++|++|+++||+++++|||.+|.++++..+ +|++. .+..+.+||+|||..+ ++ .
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~--~~~~~~~g~~~G~~~~---~~------~ 91 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVS--LIDFFAAPCFIGEIEL---ID------K 91 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEe--eeeecCCCCeEEeehh---hc------C
Confidence 44567778899999999999999999999999999999998864 55544 3578999999999854 22 2
Q ss_pred CCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 008346 434 PHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKEN 513 (569)
Q Consensus 434 ~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~ 513 (569)
.+++.+++|+++|+++.++++++++++.++ |.+.......+.....+...+.....+.++++
T Consensus 92 ~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~------------------p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (226)
T PRK10402 92 DHETKAVQAIEECWCLALPMKDCRPLLLND------------------ALFLRKLCKFLSHKNYRNIVSLTQNQSFPLEN 153 (226)
T ss_pred CCCCccEEEeccEEEEEEEHHHHHHHHhcC------------------HHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 367889999999999999999999999988 34433333333332222233333333445666
Q ss_pred hhhhhh------hhcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCc
Q 008346 514 ILQDQK------AEAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 514 r~~~~~------~~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
|+..-+ ...+.++.++|..+++||. +.++|+.++++|.+..++
T Consensus 154 Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~ 203 (226)
T PRK10402 154 RLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSK 203 (226)
T ss_pred HHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeC
Confidence 643211 1124578999999999999 999999999999887665
No 10
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.64 E-value=6.7e-15 Score=146.93 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=127.9
Q ss_pred HHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCc
Q 008346 358 EMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHS 436 (569)
Q Consensus 358 ~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~s 436 (569)
.++...+.+.|+||++|+++||+++++|||.+|.|+++..+ +|++. .+..+.+||+||+.. ..++
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~--i~~~~~~Gd~fG~~~------------~~~~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQ--IGAFHLPGDVFGLES------------GSTH 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCceecccC------------CCcC
Confidence 34556788999999999999999999999999999998864 55543 357789999999752 1245
Q ss_pred ccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 008346 437 NCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQ 516 (569)
Q Consensus 437 t~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r~~ 516 (569)
..+++|+++|+++.+++++|+.++.++ |.+..+....+....+...+++......++++|+.
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla 160 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATD------------------VDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVA 160 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhC------------------hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 689999999999999999999999998 55555555555555555455555555566666642
Q ss_pred hh-----------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCC
Q 008346 517 DQ-----------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPG 554 (569)
Q Consensus 517 ~~-----------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~ 554 (569)
.- .... +.++.++|..++++|. +.++++.|+++|.+..
T Consensus 161 ~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~ 211 (230)
T PRK09391 161 AFLLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRGLIGL 211 (230)
T ss_pred HHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 11 0111 5789999999999999 9999999999999874
No 11
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.62 E-value=7.1e-15 Score=141.44 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=120.5
Q ss_pred CCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEE
Q 008346 371 ECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAF 449 (569)
Q Consensus 371 Ge~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell 449 (569)
|+.|+++||+.+++|+|.+|.|+++..+ +|++. .+..+++|++|||..+ ++. ...++..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~--~l~~~~~g~~~G~~~~---~~~----~~~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEI--TVALLRENSVFGVLSL---ITG----HRSDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEe--eeEEccCCCEeeeeee---ccC----CCCccceEEEEecceEEE
Confidence 7899999999999999999999998853 55553 3588999999999854 221 111345789999999999
Q ss_pred EecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hhhhhhhc-CCC
Q 008346 450 AINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENI---LQDQKAEA-GGK 525 (569)
Q Consensus 450 ~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r---~~~~~~~~-~~~ 525 (569)
.+++++|++++.++ +.+ .+...+.++.+.+.........+......|+...++..++.. ..++.... +.+
T Consensus 72 ~i~~~~~~~l~~~~--p~l----~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t 145 (193)
T TIGR03697 72 AVPIEQVEKAIEED--PDL----SMLLLQGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLS 145 (193)
T ss_pred EeeHHHHHHHHHHC--hHH----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCC
Confidence 99999999999998 322 122222333344333333333333333444443322222211 11222222 689
Q ss_pred chhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 526 PSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 526 ~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
+.++|.-+++||. ++++|+.++++|.+..+|=.|.+
T Consensus 146 ~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 182 (193)
T TIGR03697 146 HQAIAEAIGSTRVTITRLLGDLRKKKLISIHKKKITV 182 (193)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 9999999999999 99999999999999877744444
No 12
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.61 E-value=3.4e-14 Score=137.06 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=140.0
Q ss_pred cccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhh
Q 008346 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 345 VplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
.+.|..++++....+....+.+.+++|++|+++||+++.+|+|.+|.++++..+ +|++. .+..+++||+|||.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~fg~~~l-- 80 (214)
T COG0664 5 NPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI--ILGFLGPGDFFGELAL-- 80 (214)
T ss_pred ccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE--EEEEecCCchhhhHHH--
Confidence 467777888888888889999999999999999999999999999999999863 45544 3578999999999976
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+. + .+++.+++|+++|+++.+++++|.+++.+. |.........+..-.+++..++
T Consensus 81 -~~-----~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------p~l~~~l~~~~~~~l~~~~~~~ 135 (214)
T COG0664 81 -LG-----G-DPRSASAVALTDVEVLEIPRKDFLELLAES------------------PKLALALLRLLARRLRQALERL 135 (214)
T ss_pred -hc-----C-CCccceEEEcceEEEEEecHHHHHHHHhhC------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1 267899999999999999999999988774 3333333344444444444444
Q ss_pred hhhhhhhhhhhhhhh---------------hh-hcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 504 LEGSLYAKENILQDQ---------------KA-EAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~---------------~~-~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
........++|.... .. .-+.++..+|..++.+|. +.+.+..++++|.+..++-++.
T Consensus 136 ~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~vsr~l~~l~~~g~i~~~~~~~~ 209 (214)
T COG0664 136 SLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAEYLGLSRETVSRILKELRKDGLISVRGKKII 209 (214)
T ss_pred HHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHHHhCCchhhHHHHHHHHHhCCcEeeCCceEE
Confidence 333334444442110 01 125788999999999999 9999999999999887764443
No 13
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.59 E-value=3.2e-14 Score=138.18 Aligned_cols=175 Identities=17% Similarity=0.187 Sum_probs=117.1
Q ss_pred cCccEEECCCCEEEecCC--CcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCccc
Q 008346 362 CLKPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNC 438 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd--~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~ 438 (569)
.++.+.|+||++|++||| +++++|+|++|.++++..+ +|++. .+..+++||+|||..+ .+ .+++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~--~l~~~~~Gd~~G~~~~---~~-------~~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNAL--TLRYVRPGEYFGEEAL---AG-------AERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCeechHHh---cC-------CCCCc
Confidence 467889999999999999 7799999999999998864 56654 3588999999999754 11 24668
Q ss_pred EEEEeceeEEEEecHHHHHH-HHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh---
Q 008346 439 ALISVTNVEAFAINTDDLRA-IVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENI--- 514 (569)
Q Consensus 439 tV~Alt~~ell~L~~edl~~-l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r--- 514 (569)
+++|+++|+++.++++++.. +..+. .+...+ +.+.....+-..+.....+|+...++.-++..
T Consensus 73 ~~~A~~~~~v~~i~~~~~~~~~~~~l--~~~l~~-----------~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~ 139 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALMSAEDNLVL--TQHLVR-----------TLARAYESIYRLVGQRLKNRIAAALLELSDTPLAT 139 (202)
T ss_pred eEEEcCceEEEEEEHHHcChhhHHHH--HHHHHH-----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC
Confidence 89999999999999987621 11111 111111 22222222222233344445544333222211
Q ss_pred hhhhhhh-cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 515 LQDQKAE-AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 515 ~~~~~~~-~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
-.++... -+.++.++|..++++|+ +++.|+.|++.|.+..++=.|.+
T Consensus 140 ~~~~~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I 188 (202)
T PRK13918 140 QEDSGETMIYATHDELAAAVGSVRETVTKVIGELSREGYIRSGYGKIQL 188 (202)
T ss_pred CCCCCeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEE
Confidence 0111121 26899999999999999 99999999999999877633443
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.38 E-value=6.6e-12 Score=108.01 Aligned_cols=106 Identities=21% Similarity=0.446 Sum_probs=92.8
Q ss_pred cccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 347 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 347 lF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
+|+.++++.++.+++.++.+.+.||++|+.+||+.+++|||.+|.++++..+ +|++. .+..+.+|++||+..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~---~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQ--IVGFLGPGDLFGELAL---L 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEecCCccCcChHHH---h
Confidence 5889999999999999999999999999999999999999999999998764 44433 3578999999999854 1
Q ss_pred CCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 426 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 426 d~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+..++..+++|.++|+++.++.++|++++.++
T Consensus 76 ------~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 107 (115)
T cd00038 76 ------GNGPRSATVRALTDSELLVLPRSDFRRLLQEY 107 (115)
T ss_pred ------cCCCCCceEEEcCceEEEEEeHHHHHHHHHHC
Confidence 12356789999999999999999999999988
No 15
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.38 E-value=7e-12 Score=108.26 Aligned_cols=108 Identities=21% Similarity=0.374 Sum_probs=92.6
Q ss_pred cccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 347 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 347 lF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
+|.+++++.++.++..++.+.|++|++|+++||+.+++|||.+|.++++..+ +|+.. .+..+.+|++|||..+ +
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--~~~~~~~g~~~g~~~~---~ 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQ--ILGILGPGDFFGELAL---L 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceE--EEEeecCCceechhhh---c
Confidence 5889999999999999999999999999999999999999999999998864 44433 3578999999999864 1
Q ss_pred CCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 426 DPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 426 d~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ....++..+++|.++|++..++.+++.....++
T Consensus 76 ~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 109 (120)
T smart00100 76 T----NSRRAASATAVALELATLLRIDFRDFLQLLQEN 109 (120)
T ss_pred c----CCCcccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence 1 112356789999999999999999999988887
No 16
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.30 E-value=2.8e-11 Score=101.11 Aligned_cols=87 Identities=24% Similarity=0.425 Sum_probs=75.5
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEec
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 444 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt 444 (569)
+.|+||++|+++||+.+++|||++|.++++..+ +++.. .+..+++|++||+..+. . + .++..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~--~~~~~~~g~~~g~~~~~---~-----~-~~~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ--IIFFLGPGDIFGEIELL---T-----G-KPSPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE--EEEEEETTEEESGHHHH---H-----T-SBBSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee--eecceeeeccccceeec---C-----C-CccEEEEEEcc
Confidence 689999999999999999999999999999875 45432 35789999999998652 1 1 26789999999
Q ss_pred eeEEEEecHHHHHHHHHHh
Q 008346 445 NVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 445 ~~ell~L~~edl~~l~~~~ 463 (569)
+|+++.|++++|.++++++
T Consensus 71 ~~~~~~i~~~~~~~~~~~~ 89 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQD 89 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHS
T ss_pred CEEEEEEeHHHHHHHHHhC
Confidence 9999999999999999988
No 17
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.27 E-value=6.9e-12 Score=134.14 Aligned_cols=134 Identities=19% Similarity=0.363 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCc-ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecC
Q 008346 321 ENLLASFIIIASLLLLLLVLGNL-TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG 399 (569)
Q Consensus 321 E~~faI~~mi~G~~lfA~lIGN~-kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dg 399 (569)
..+|-.++|..|.-=..-..--. .+|+|+++|++.|..|++.++...|..|++|+|||+.++.+|+|.+|.|.+...+.
T Consensus 252 R~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e 331 (732)
T KOG0614|consen 252 REVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDE 331 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCC
Confidence 34577777777764332221111 79999999999999999999999999999999999999999999999999988654
Q ss_pred CeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEece-eEEEEecHHHHHHHHHHh
Q 008346 400 GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 400 g~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~-~ell~L~~edl~~l~~~~ 463 (569)
+...-..+..++.||+|||.+|. +...|++++.|..+ +++++|++|.|+.++...
T Consensus 332 ~~~q~~~lr~l~kGd~FGE~al~---------~edvRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 332 GSTQPQELRTLNKGDYFGERALL---------GEDVRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred CCCchhHHhhccccchhhHHHhh---------ccCccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 32222246889999999999873 23468999999988 999999999999999888
No 18
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.23 E-value=6.9e-11 Score=128.21 Aligned_cols=106 Identities=17% Similarity=0.303 Sum_probs=92.8
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.|+.+++.+.|++||+|+++||+++++|+|++|+++++..+ +|+. .+..+++|++|||. +
T Consensus 12 ~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~---~l~~l~~Gd~fG~~-l- 86 (413)
T PLN02868 12 SVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESR---PEFLLKRYDYFGYG-L- 86 (413)
T ss_pred cCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcE---EEEEeCCCCEeehh-h-
Confidence 6899999999999999999999999999999999999999999999999998865 3332 45788999999975 3
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++.++++|.++|+++.|++++|..+....
T Consensus 87 ---~------~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 87 ---S------GSVHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred ---C------CCCcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 1 1357899999999999999999998776655
No 19
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=1.7e-10 Score=118.99 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=92.7
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+.-+|.++|++.+..+.+.+..+.++.|+.|++|||.++.+|+|-+|..+++.. |+ .+..+++|.+|||.+|.
T Consensus 126 ~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~----~v~~~~~g~sFGElALm- 198 (368)
T KOG1113|consen 126 KNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GT----YVTTYSPGGSFGELALM- 198 (368)
T ss_pred hccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--Ce----EEeeeCCCCchhhhHhh-
Confidence 557889999999999999999999999999999999999999999999999984 33 35789999999999873
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
-.+|+.+||.|.+++.++.|++..|..++-..
T Consensus 199 --------yn~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 199 --------YNPPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred --------hCCCcccceeeccccceEEEeeceeEEEeecc
Confidence 13589999999999999999999987655443
No 20
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.06 E-value=4.4e-10 Score=106.83 Aligned_cols=168 Identities=19% Similarity=0.227 Sum_probs=97.5
Q ss_pred hhccccchh--cHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHHHHHHhhhchhhHHhH
Q 008346 121 AKKCFYLNS--FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKW 198 (569)
Q Consensus 121 a~~~~Yl~s--F~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~~~i~~~~g~~~~ta~ 198 (569)
++ +|+++ .++|+++++|.+..+..... ...+. ...+++.++++ +.|++|+.+..+.+.+..+.+. ...
T Consensus 25 ~~--~y~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~ 94 (200)
T PF00520_consen 25 RR--RYFRSWWNWFDFISVIPSIVSVILRSY---GSASA---QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSF 94 (200)
T ss_dssp -G--CCCCSHHHHHHHHHHHHHCCHHCCHCS---S--HH---CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHH
T ss_pred HH--HHhcChhhccccccccccccccccccc---ccccc---cceEEEEEeec-cccccccccccccccccccccc-ccc
Confidence 67 99999 77999999998655432111 11000 12333333332 2244444444333333222122 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCCCcccCCCccccchhH
Q 008346 199 VKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQ 278 (569)
Q Consensus 199 ~~a~~~L~~y~LasH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~~~~~~~~~f~~gi~~ 278 (569)
......++++++..|..+|+|+.+.-..++.|+. . .+-... +
T Consensus 95 ~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~----------~------------~~~~~~--------~-------- 136 (200)
T PF00520_consen 95 PDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD----------P------------TWDSEN--------D-------- 136 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------------------------SS--------------------
T ss_pred ccccccccccccccccccchhheecccccccccc----------c------------cccccc--------c--------
Confidence 2223334566678999999999887322211100 0 000000 0
Q ss_pred HhhhcccccchhhHhHHHHHHHHHhhhccccCCCCCCCC-----cchhhHHH-HHHHHHHHHHHHHHhcCc
Q 008346 279 EAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTST-----HEGENLLA-SFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 279 ~a~~~~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~-----~~~E~~fa-I~~mi~G~~lfA~lIGN~ 343 (569)
....+..+.|..|+||.++++|+.|+|+..+. +..|.+|. +++.+.+.++++++||+|
T Consensus 137 -------~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 137 -------IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp -------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 01234567899999999999999999988776 78899999 667777789999999986
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.00 E-value=2.3e-10 Score=122.66 Aligned_cols=105 Identities=21% Similarity=0.416 Sum_probs=95.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+-.|+++++.+.+.+|+++|-|..|.+|++|++|||++++||.+.+|+++|.+ +|+ .++.+++|..|||.++.
T Consensus 158 ~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~----ll~~m~~gtvFGELAIL- 230 (732)
T KOG0614|consen 158 KNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGK----LLGKMGAGTVFGELAIL- 230 (732)
T ss_pred hhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCe----eeeccCCchhhhHHHHH-
Confidence 67889999999999999999999999999999999999999999999999987 455 46889999999999763
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+||++|+|+++|.+++|+++-|..++..-
T Consensus 231 --y------nctRtAsV~alt~~~lWaidR~vFq~IM~~t 262 (732)
T KOG0614|consen 231 --Y------NCTRTASVRALTDVRLWAIDREVFQAIMMRT 262 (732)
T ss_pred --h------CCcchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 1 2479999999999999999999999988765
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-07 Score=103.68 Aligned_cols=106 Identities=15% Similarity=0.294 Sum_probs=92.9
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+.|.|..++++.+++|...+....|.|||.|+.-|.|.+.+|+|.+|.|++... ||+ .+..+..||.||-..+.
T Consensus 11 ~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~-~g~----v~~~~~~gdlFg~~~l~- 84 (610)
T COG2905 11 QHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSD-GGE----VLDRLAAGDLFGFSSLF- 84 (610)
T ss_pred cCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcC-CCe----eeeeeccCccccchhhc-
Confidence 679999999999999999999999999999999999999999999999998764 555 46889999999988661
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+ ..+ ...++.|.+|+-++.|+++.|.++..++
T Consensus 85 --~-----~~~-~~~~~~aeedsl~y~lp~s~F~ql~~~n 116 (610)
T COG2905 85 --T-----ELN-KQRYMAAEEDSLCYLLPKSVFMQLMEEN 116 (610)
T ss_pred --c-----cCC-CcceeEeeccceEEecCHHHHHHHHHhC
Confidence 1 112 2356778899999999999999999999
No 23
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=98.64 E-value=6.6e-08 Score=104.06 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=41.9
Q ss_pred HHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 008346 297 YCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 342 (569)
Q Consensus 297 ~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN 342 (569)
.|+||++.|||||||||..|.+..=++.+-...+.|+++-|+-|--
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPIti 425 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITI 425 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHh
Confidence 4899999999999999999999999999999999999999985543
No 24
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.62 E-value=4.5e-08 Score=101.29 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=94.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|++..++..+...+++.+.++.|++|+.|+++|++++++|+|.+|.+.+...-+|. .+ .++.||+|||.+|.
T Consensus 244 s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v----~v-kl~~~dyfge~al~- 317 (368)
T KOG1113|consen 244 SVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGV----EV-KLKKGDYFGELALL- 317 (368)
T ss_pred cchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCCe----EE-EechhhhcchHHHH-
Confidence 7899999999999999999999999999999999999999999999999987654432 23 89999999999872
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++.+||.|.++..+..++++.|+.++.-.
T Consensus 318 -~-------~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 318 -K-------NLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred -h-------hchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 2 2368899999999999999999999998865
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.36 E-value=4.7e-07 Score=75.44 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|..++||+..|+||+||||..|.+...++++++.+++|+.++++.++++
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~ 73 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVL 73 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 357779999999999999999999999999999999999999999998875
No 26
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.01 E-value=2.1e-06 Score=88.99 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=38.4
Q ss_pred HHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 008346 298 CFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLL 338 (569)
Q Consensus 298 slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~ 338 (569)
++||++.|||||||||..|.+++-++..-+..|.|++--|+
T Consensus 397 aFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiAL 437 (507)
T KOG1545|consen 397 AFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIAL 437 (507)
T ss_pred cceEEEEEEEeeccccceecccCceehhhHHhhhhheEecc
Confidence 89999999999999999999999999999999999987776
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.75 E-value=6.5e-05 Score=81.95 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=47.6
Q ss_pred hHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 291 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 291 ~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
-+.-|--++|||+.|||||||||++|.+-.-.+.+.+..++|+-+||+--|-+
T Consensus 266 ~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGIL 318 (654)
T KOG1419|consen 266 EFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGIL 318 (654)
T ss_pred cchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccc
Confidence 35678889999999999999999999998888999999999999999976665
No 28
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.55 E-value=4.3e-05 Score=87.07 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=79.7
Q ss_pred HHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCC
Q 008346 356 LSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIP 434 (569)
Q Consensus 356 L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~-dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~ 434 (569)
+..+-..+.-....+|+.++++||..|++|+|++|+++.... +||+..+ +...+.||.+||... +. ..
T Consensus 501 lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt------~~ 569 (1158)
T KOG2968|consen 501 LRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LT------KQ 569 (1158)
T ss_pred HhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hh------cC
Confidence 334444566688999999999999999999999999998765 4666543 478899999999743 11 23
Q ss_pred CcccEEEEeceeEEEEecHHHHHHHHHHhh
Q 008346 435 HSNCALISVTNVEAFAINTDDLRAIVYQYW 464 (569)
Q Consensus 435 ~st~tV~Alt~~ell~L~~edl~~l~~~~~ 464 (569)
+|..||.|+-++|+-.|+..-|..+..+|+
T Consensus 570 ~R~tTv~AvRdSelariPe~l~~~ik~ryP 599 (1158)
T KOG2968|consen 570 PRATTVMAVRDSELARIPEGLLNFIKLRYP 599 (1158)
T ss_pred CccceEEEEeehhhhhccHHHHHHHHHhcc
Confidence 677899999999999999999999999983
No 29
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.47 E-value=0.00013 Score=78.91 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCccccccc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTVPMFQ 349 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~kVplF~ 349 (569)
.+..++||++.|+||+||||..|.+...++|+++++++|+.+|++.++.+-.|+++
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~ 223 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR 223 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999998899999999999999999999888666643
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.46 E-value=0.00041 Score=73.53 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhhccccCCCC--CCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNL--QTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~--~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..+..+|+++++|+||+|||. +++.+..=.+.+++=+++|+++.|+++|-+
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glv 135 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLV 135 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998 456555555666788999999999999977
No 31
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=97.36 E-value=2.2e-05 Score=82.09 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=38.6
Q ss_pred HHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 008346 296 IYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLL 338 (569)
Q Consensus 296 ~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~ 338 (569)
-.++|+++.||||+||||..+.+..-++|.-+..+.|+++-|+
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIAL 400 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIAL 400 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEec
Confidence 3589999999999999999998999999999989999887776
No 32
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.30 E-value=0.00011 Score=61.32 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=46.3
Q ss_pred ccccccccccccChhhh---hhhcccCccccccccccccccCCeeecCCCch---HHHHHHHHHHHHhhccceee
Q 008346 4 QTFRPFRRGTNLDSGFL---QRGQRLASNGYNIMSTSLDNHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFF 72 (569)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iidP~s~~---Wn~~~li~~i~~~~v~Plf~ 72 (569)
|....++|..|..+..+ ++.+++..++.++ ...+||||.|+| ||.++++.+++++++.|+.+
T Consensus 1 ~~~~~~~p~~nk~sl~~f~S~~ai~~E~~R~~~-------~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 1 QFSSLLQPGDNKFSLRVFGSKKAIEKEKERQRS-------SGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred CcHHhhccccCHHHHHHHccHHHHHHHHHHHhc-------CCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56677888888888777 3333333333332 335799999999 99999999999999999754
No 33
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.19 E-value=0.022 Score=56.31 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=101.1
Q ss_pred HHHHHHhcCccEEECCCCEE-EecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCC
Q 008346 355 ILSEMCKCLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNI 433 (569)
Q Consensus 355 ~L~~L~~~lk~~~f~kGe~I-ireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~ 433 (569)
..+.+....++..+.+|..+ .-+.+..+..+++.+|.+.+...| +- .+.+..+-..||=... ..+
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d-~l----l~~t~~aP~IlGl~~~---~~~------ 79 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREE-NV----LIGITQAPYIMGLADG---LMK------ 79 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecC-Ce----EEEeccCCeEeecccc---cCC------
Confidence 45556666777899999997 443333467999999999995433 32 3567777788885421 111
Q ss_pred CCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 008346 434 PHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKEN 513 (569)
Q Consensus 434 ~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~ 513 (569)
......++|.++|+++.++.+++.++++++ +=|++++..++...-. ...|-....-.++.+
T Consensus 80 ~~~~~~l~ae~~c~~~~i~~~~~~~iie~~------------------~LW~~~~~~l~~~~~~-l~~rd~~l~g~~sY~ 140 (207)
T PRK11832 80 NDIPYKLISEGNCTGYHLPAKQTITLIEQN------------------QLWRDAFYWLAWQNRI-LELRDVQLIGHNSYE 140 (207)
T ss_pred CCceEEEEEcCccEEEEeeHHHHHHHHHHh------------------chHHHHHHHHHHHHHH-HHHHHHHHhcCcHHH
Confidence 123468999999999999999999999999 6677777766554211 111111111122222
Q ss_pred hh---hhhh-hhcCCCchhhhhHH------hhcHH-HHHHHHHHHHcCCcCCC
Q 008346 514 IL---QDQK-AEAGGKPSKFGTAI------YATQF-FTYVRRSVKRNGGLPGG 555 (569)
Q Consensus 514 r~---~~~~-~~~~~~~~~~~~~~------~~sr~-~~~~~~~~~~~~~~~~~ 555 (569)
-- .... ..++....+.++.= ..||- +.+.|.+||+.|-+.-.
T Consensus 141 ~IR~~L~eL~~~~e~~R~~I~v~~YIq~RT~LSRS~ImkILs~LKkGgYIei~ 193 (207)
T PRK11832 141 QIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAALRKGGYIEMN 193 (207)
T ss_pred HHHHHHHHHHhCCHHHHhhccHHHHHHHhccccHHHHHHHHHHHhcCCCEEEe
Confidence 10 0000 00000011222221 36888 99999999999955433
No 34
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.38 E-value=0.01 Score=68.49 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=83.3
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
+-|.|=.++ .+.+...+..||+|++.||+.+.+|.+.+|.+++...+ +|++. .+....+|+-|--..-
T Consensus 104 EkP~fl~L~--------rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~--llk~V~~G~~~tSllS- 172 (1158)
T KOG2968|consen 104 EKPVFLELD--------RHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEY--LLKTVPPGGSFTSLLS- 172 (1158)
T ss_pred ccceeeeec--------hhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCcee--eEeeccCCCchHhHHH-
Confidence 677776665 66777889999999999999999999999999988765 45544 3588899977665421
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
.+|..+.......+..++|.++|.+..++...|.++...|
T Consensus 173 -iLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~ 212 (1158)
T KOG2968|consen 173 -ILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESFHKN 212 (1158)
T ss_pred -HHHhccCCCcccceeeeeeecCceEEEeccchhhhhhccC
Confidence 2332222222356778899999999999999999998887
No 35
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.02 E-value=0.27 Score=46.16 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHhc-CccEEECCCCEEEecCC-CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCC
Q 008346 350 MMGKSILSEMCKC-LKPVLYVQECCIVKEGD-PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDP 427 (569)
Q Consensus 350 ~ld~~~L~~L~~~-lk~~~f~kGe~IireGd-~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~ 427 (569)
+++......|+.+ .+.....+|+.-.-||. +.|.+-++++|+++++. +|+ .+..+.|-+|..-- .|-...
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~--~g~----fLH~I~p~qFlDSP--EW~s~~ 85 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC--DGR----FLHYIYPYQFLDSP--EWESLR 85 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE--CCE----eeEeecccccccCh--hhhccc
Confidence 5678888888887 56688999999988884 68999999999999876 355 36888999887654 332221
Q ss_pred CCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 428 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 428 ~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
.+ ....-..|+.|.++|..+.-+++.|+.++.+.
T Consensus 86 ~s--~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 86 PS--EDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred cC--CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 11 12245689999999999999999999999887
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.0054 Score=65.51 Aligned_cols=49 Identities=14% Similarity=0.367 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
+.-++|++.+++||+|||++.|.+.+.++|+|+..++|+-++..+++|+
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~ 164 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADI 164 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHH
Confidence 4568999999999999999999889999999999999999999999998
No 37
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.77 E-value=0.0065 Score=66.78 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHH-------HhcCc
Q 008346 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLL-------VLGNL 343 (569)
Q Consensus 292 ~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~-------lIGN~ 343 (569)
.-.|..|+|+-+.||+||||||+-.+++.-.+|.++..+.|+.+||. +|||-
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr 344 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR 344 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence 34699999999999999999999999999999999999999999997 67876
No 38
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.23 E-value=0.028 Score=63.00 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=83.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEE-ECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVL-YVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~-f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
+.|-|++|+-...+++|..+.... =..|.+|+..|+..|.-+.|++|+|++...||.+ ..+.-|+-||.+.-
T Consensus 285 qlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mGnSFG~~PT- 357 (1283)
T KOG3542|consen 285 QLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMGNSFGAEPT- 357 (1283)
T ss_pred hchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecccccCCCCC-
Confidence 679999999999999999887644 4579999999999999999999999999988876 45788999997631
Q ss_pred hcCCCCCCCCCCCcccEE-EEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV-~Alt~~ell~L~~edl~~l~~~~ 463 (569)
.|..- -.-.+ .-+.||+...+...|+..++++.
T Consensus 358 --~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 358 --PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred --cchhh------hhhhhheecccceEEEeehhhHHHHHHHH
Confidence 11110 01112 24689999999999999998876
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=92.46 E-value=0.54 Score=50.19 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhccccCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~--~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
+..+|-+++-|=||+|||.-..| .+.=++.-++=+|+|+++-|+++|-|
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i 163 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAI 163 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778899999999975443 33223333556889999999999987
No 40
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=91.04 E-value=3.8 Score=44.89 Aligned_cols=52 Identities=10% Similarity=-0.073 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 292 ~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..-|.-++|.-..|--++||||+.|++..=...+++.-++|+++-|++|.=+
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvi 336 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVI 336 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHH
Confidence 4568889999999999999999999888888899999999999999998766
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=88.71 E-value=0.12 Score=53.83 Aligned_cols=40 Identities=18% Similarity=0.382 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHH
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASL 333 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~ 333 (569)
|+.-|||++.+.+||+|||-.+|.+++=++|+|+..++|.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gi 119 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGI 119 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcC
Confidence 6778999999999999999999999999999999999885
No 42
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=88.07 E-value=0.43 Score=33.15 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=24.2
Q ss_pred CCchhhhhHHhhcHH-HHHHHHHHHHcCCc
Q 008346 524 GKPSKFGTAIYATQF-FTYVRRSVKRNGGL 552 (569)
Q Consensus 524 ~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~ 552 (569)
.+.+++|..++.+|+ |++++..++++|.+
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 467899999999999 99999999999864
No 43
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=87.06 E-value=1.3 Score=35.00 Aligned_cols=45 Identities=27% Similarity=0.268 Sum_probs=34.3
Q ss_pred EEECCCCEEEecCCCcC-eEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPIC-EMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~-~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..++||+..-..-.+.. ++++|++|++++. .+|.+ ..+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~------~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGER------VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEE------EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEE------eEccCCEEEE
Confidence 46788887766666666 9999999999987 45433 5689999754
No 44
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=85.05 E-value=0.23 Score=52.91 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhh--------HHHHHHHHHHHHHHHHHh
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGEN--------LLASFIIIASLLLLLLVL 340 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~--------~faI~~mi~G~~lfA~lI 340 (569)
-|+-|+|+++.++||+|+||..+.+.... .+..+...+|...++.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 47889999999999999999988876544 577888899998888875
No 45
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=82.91 E-value=0.82 Score=47.88 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhccccCCCCCCCC-------cchh-hHHHHHHHHHHHHHHHHHh
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTST-------HEGE-NLLASFIIIASLLLLLLVL 340 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~-------~~~E-~~faI~~mi~G~~lfA~lI 340 (569)
-|+-|+|+.+.|+||+|+||..+. +..+ ..|+.+..++|+.+++-++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~ 240 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALL 240 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHH
Confidence 378899999999999999997664 2233 3566778889987776654
No 46
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=79.81 E-value=3.8 Score=33.64 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred EECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 367 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 367 ~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+||.+-..-.. +|..+|++|.+.+... +|+. ..+++||.|-
T Consensus 13 ~~~pg~~~~~~~~--~E~~~vleG~v~it~~-~G~~-----~~~~aGD~~~ 55 (74)
T PF05899_consen 13 ECTPGKFPWPYPE--DEFFYVLEGEVTITDE-DGET-----VTFKAGDAFF 55 (74)
T ss_dssp EEECEEEEEEESS--EEEEEEEEEEEEEEET-TTEE-----EEEETTEEEE
T ss_pred EECCceeEeeCCC--CEEEEEEEeEEEEEEC-CCCE-----EEEcCCcEEE
Confidence 3566665555433 9999999999998654 5543 5689999875
No 47
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=76.07 E-value=1.9 Score=34.88 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=33.8
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
+.++.++|..++.||. +++.++.+++.|.+...+=.|.+
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I 67 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIII 67 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 7899999999999999 99999999999999766534443
No 48
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=69.16 E-value=7.3 Score=33.62 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=30.3
Q ss_pred hcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 521 EAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 521 ~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
..+.++.+||..+++||. +.++++.|.+.|++.
T Consensus 45 ~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~ 78 (95)
T TIGR01610 45 QDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF 78 (95)
T ss_pred CCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 347889999999999999 999999999999887
No 49
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=65.50 E-value=39 Score=30.75 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=31.7
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..++||..+-..-....++++|++|++++...++|++ ..+++||.+-
T Consensus 40 ~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~-----~~L~aGD~i~ 86 (125)
T PRK13290 40 TTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV-----HPIRPGTMYA 86 (125)
T ss_pred EEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-----EEeCCCeEEE
Confidence 4678887554322223589999999999863333443 5699999865
No 50
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=63.03 E-value=11 Score=43.28 Aligned_cols=88 Identities=13% Similarity=0.218 Sum_probs=67.7
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
....|.++=..-+.++|...+...++...++++.||.+..-|++++|.|-+. |. . .-|-..||...
T Consensus 41 ~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----gq------i-~mp~~~fgkr~--- 106 (1283)
T KOG3542|consen 41 QLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----GQ------I-YMPYGCFGKRT--- 106 (1283)
T ss_pred hhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----cc------e-ecCcccccccc---
Confidence 3466777778889999999999999999999999999999999999998753 22 1 33444466541
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTD 454 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~e 454 (569)
...++.+.--++++|..+++..
T Consensus 107 ---------g~~r~~nclllq~semivid~~ 128 (1283)
T KOG3542|consen 107 ---------GQNRTHNCLLLQESEMIVIDYP 128 (1283)
T ss_pred ---------ccccccceeeecccceeeeecC
Confidence 1247778888899999888543
No 51
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=60.59 E-value=19 Score=32.44 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=40.4
Q ss_pred CccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecc
Q 008346 363 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 419 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~ 419 (569)
.....+.||+.+-.--.| .++..+|++|++++... |+. ..+++||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~-----~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEK-----KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCc-----eEecCCCEEEEC
Confidence 345779999999888887 88999999999998764 332 569999998765
No 52
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=56.19 E-value=24 Score=33.62 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=44.0
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHH
Q 008346 380 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAI 459 (569)
Q Consensus 380 ~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l 459 (569)
+.+++|++++|.+.+-..++|+. ....+++||+|=-- . +.| .+-++.++|.++++.++.-..-
T Consensus 47 ~tdE~FyqleG~~~l~v~d~g~~---~~v~L~eGd~flvP--------~---gvp---HsP~r~~~t~~LvIE~~r~~~~ 109 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTEEGKR---EDVPIREGDIFLLP--------P---HVP---HSPQRPAGSIGLVIERKRPQGE 109 (159)
T ss_pred CCceEEEEEcceEEEEEEcCCcE---EEEEECCCCEEEeC--------C---CCC---cccccCCCcEEEEEEeCCCCCC
Confidence 37999999999999877776542 12569999986421 1 111 1234568888898888765544
Q ss_pred HHHh
Q 008346 460 VYQY 463 (569)
Q Consensus 460 ~~~~ 463 (569)
.+.+
T Consensus 110 ~d~~ 113 (159)
T TIGR03037 110 LDGF 113 (159)
T ss_pred Ccce
Confidence 4433
No 53
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=52.94 E-value=61 Score=27.30 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=44.5
Q ss_pred cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEE
Q 008346 362 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 441 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~ 441 (569)
......+.||..+=....++.+..||++|.+.- ++++ ..+||+.=+. +.+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~~~--------~~~G~~~~~p--------------~g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GDGR--------YGAGDWLRLP--------------PGSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TTCE--------EETTEEEEE---------------TTEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CCcc--------CCCCeEEEeC--------------CCCccccC
Confidence 345567889988888888889999999999872 3333 6889876543 13456677
Q ss_pred EeceeEEEE
Q 008346 442 SVTNVEAFA 450 (569)
Q Consensus 442 Alt~~ell~ 450 (569)
+.+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888775
No 54
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.64 E-value=40 Score=30.49 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=35.0
Q ss_pred cCccEEECCCCEE-EecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 362 CLKPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 362 ~lk~~~f~kGe~I-ireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
..+...+++|+-+ .+--...++.|+|++|...+... +++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~~-----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GEE-----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CEE-----EEecCCCEE
Confidence 3455677888775 55566689999999999998653 443 458888864
No 55
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=51.05 E-value=30 Score=33.63 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=45.6
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHH
Q 008346 379 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 458 (569)
Q Consensus 379 d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~ 458 (569)
++.+++|++++|.+.+...|+|+.. ...+++||+|=- |. +.|.+ -++.++|..+++.++.-..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fll--------P~---gvpHs---P~r~~~tv~LviE~~r~~~ 114 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFLL--------PP---HVPHS---PQREAGSIGLVIERKRPEG 114 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEEe--------CC---CCCcC---CccCCCeEEEEEEeCCCCC
Confidence 5689999999999998877766421 256899997642 11 11222 2446889999998877554
Q ss_pred HHHHh
Q 008346 459 IVYQY 463 (569)
Q Consensus 459 l~~~~ 463 (569)
..+.+
T Consensus 115 ~~d~~ 119 (177)
T PRK13264 115 ELDGF 119 (177)
T ss_pred Cccce
Confidence 45444
No 56
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=48.46 E-value=24 Score=27.34 Aligned_cols=33 Identities=6% Similarity=-0.001 Sum_probs=29.7
Q ss_pred cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCC
Q 008346 522 AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPG 554 (569)
Q Consensus 522 ~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~ 554 (569)
.+.++.+++..++.|+. +.+.++.|+++|.+..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 36788999999999999 9999999999998864
No 57
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=43.09 E-value=25 Score=25.27 Aligned_cols=31 Identities=6% Similarity=0.052 Sum_probs=28.2
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
+.++.++|..++.|+- +.+.++.|.+.|.+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 5678899999999999 999999999999885
No 58
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.13 E-value=1.2e+02 Score=39.13 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=19.6
Q ss_pred cccCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 008346 307 SCAGQNLQTSTHEGENLLASFIIIASLLLL 336 (569)
Q Consensus 307 tTvG~g~~~s~~~~E~~faI~~mi~G~~lf 336 (569)
+.++.+.+...+.+..+|-++..++|.++.
T Consensus 1063 ~~~~~~p~~~~~~~~~~ffvifii~~~ff~ 1092 (1592)
T KOG2301|consen 1063 RGVNAQPILESNLYMYLFFVIFIIIGSFFT 1092 (1592)
T ss_pred hccCcCCcccccccceeehhhhhhHHhhhh
Confidence 345667777777777777766666665543
No 59
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.89 E-value=23 Score=42.51 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=17.1
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHhhhch
Q 008346 162 VWLKVVVIVQYVPRFYRIYRLYAVAESTSGI 192 (569)
Q Consensus 162 ~~Lrli~l~q~lpRL~Ri~~l~~~i~~~~g~ 192 (569)
++|.+++ +.|++|-+|-.+.+.+..|+
T Consensus 1220 kILgVlr----vLRlLRtlRpLRviSra~gl 1246 (1956)
T KOG2302|consen 1220 KILGVLR----VLRLLRTLRPLRVISRAPGL 1246 (1956)
T ss_pred HHHHHHH----HHHHHHHhhHHHHHhhcccH
Confidence 4555443 45777777777777776664
No 60
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=40.85 E-value=7.7 Score=43.32 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHH
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASF 327 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~ 327 (569)
-+.|+|+.+.|.+||||||..|..-...+..++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi 250 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVI 250 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHH
Confidence 456889999999999999998876555544433
No 61
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=40.74 E-value=35 Score=20.90 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 008346 488 KACVIQAAWCRYKKRKL 504 (569)
Q Consensus 488 ~~~~iq~a~rr~~~r~~ 504 (569)
++..||..||.+..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57899999999988764
No 62
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=39.61 E-value=23 Score=37.51 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
+.+|.+.|.-++.||. |++.|...|++|.|+
T Consensus 29 g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~ 60 (318)
T PRK15418 29 GLTQSEIGERLGLTRLKVSRLLEKGRQSGIIR 60 (318)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHcCcEE
Confidence 4689999999999999 999999999999873
No 63
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=38.86 E-value=84 Score=28.85 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.0
Q ss_pred CccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEec
Q 008346 363 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGE 418 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE 418 (569)
+....+.||...-..-.+ .+++++|++|+..+...+ ++++. ....+++||.+=-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~--~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKV--YDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeE--EEEEecCCCEEEE
Confidence 344567888876555433 679999999999987643 22211 2367899997643
No 64
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=34.86 E-value=1.1e+02 Score=27.78 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=33.9
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
-..+||+.=..-++ +|..-|++|.+++. .++|+. ..+++||.|=
T Consensus 50 We~TpG~~r~~y~~--~E~chil~G~v~~T-~d~Ge~-----v~~~aGD~~~ 93 (116)
T COG3450 50 WECTPGKFRVTYDE--DEFCHILEGRVEVT-PDGGEP-----VEVRAGDSFV 93 (116)
T ss_pred EEecCccceEEccc--ceEEEEEeeEEEEE-CCCCeE-----EEEcCCCEEE
Confidence 45778888777777 89999999999964 456663 5689999653
No 65
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=34.30 E-value=56 Score=31.12 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=29.2
Q ss_pred EEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecc
Q 008346 374 IVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 419 (569)
Q Consensus 374 IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~ 419 (569)
..+-....+|++.|++|..... .|+++ ..+++||+.|=-
T Consensus 57 ~~H~Hs~edEfv~ILeGE~~l~-~d~~e------~~lrpGD~~gFp 95 (161)
T COG3837 57 LRHWHSAEDEFVYILEGEGTLR-EDGGE------TRLRPGDSAGFP 95 (161)
T ss_pred cccccccCceEEEEEcCceEEE-ECCee------EEecCCceeecc
Confidence 3444466789999999999865 46665 469999998843
No 66
>PF13730 HTH_36: Helix-turn-helix domain
Probab=33.20 E-value=45 Score=25.09 Aligned_cols=28 Identities=4% Similarity=0.113 Sum_probs=25.7
Q ss_pred CchhhhhHHhhcHH-HHHHHHHHHHcCCc
Q 008346 525 KPSKFGTAIYATQF-FTYVRRSVKRNGGL 552 (569)
Q Consensus 525 ~~~~~~~~~~~sr~-~~~~~~~~~~~~~~ 552 (569)
++..++..++.|+- +.++++.|.+.|.+
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 67899999999999 99999999999874
No 67
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=32.52 E-value=1.2e+02 Score=32.83 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred hHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 291 FKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 291 ~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..--|+-++=+++..|.+++.+...+.-..=..+++++.++.+++|-+.|.++
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i 149 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHI 149 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777888888887655422212227777778888888888877766
No 68
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=31.83 E-value=26 Score=34.11 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHhcCccEE--ECCCCEEEecCCCcCe
Q 008346 350 MMGKSILSEMCKCLKPVL--YVQECCIVKEGDPICE 383 (569)
Q Consensus 350 ~ld~~~L~~L~~~lk~~~--f~kGe~IireGd~~~~ 383 (569)
..++....+..+...|.. +.+||.|+++||.+++
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT~ 208 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVTE 208 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeCH
Confidence 445667788888999988 9999999999998763
No 69
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.09 E-value=52 Score=25.94 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=26.6
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
+.+..++|..+..|+. |..+++.|.+.|.+.
T Consensus 22 ~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 22 PVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp SBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 4566899999999999 999999999999874
No 70
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=31.05 E-value=47 Score=27.99 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=25.6
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcC
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNG 550 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~ 550 (569)
..|++.||..++.||- +.+.++.||+.|
T Consensus 19 ~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G 47 (79)
T COG1654 19 FVSGEKLAEELGISRTAVWKHIQQLREEG 47 (79)
T ss_pred cccHHHHHHHHCccHHHHHHHHHHHHHhC
Confidence 3577899999999999 999999999998
No 71
>PRK11171 hypothetical protein; Provisional
Probab=29.90 E-value=1.4e+02 Score=30.71 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.7
Q ss_pred cCccEEECCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 362 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 362 ~lk~~~f~kGe~Iir-eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+....++||.-+-. +.....|.++|++|++++.. |++. ..+++||..=
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~~-----~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NNDW-----VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 455678999988877 47778899999999999743 4442 5689999753
No 72
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=28.85 E-value=44 Score=26.50 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=28.2
Q ss_pred cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 522 AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 522 ~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
.+.+..+++..++.+|- |.++++.|.+.|.+.
T Consensus 21 ~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~ 53 (68)
T PF01978_consen 21 GPATAEEIAEELGISRSTVYRALKSLEEKGLVE 53 (68)
T ss_dssp CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34567899999999999 999999999999874
No 73
>PRK11171 hypothetical protein; Provisional
Probab=28.53 E-value=1.3e+02 Score=30.92 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=31.8
Q ss_pred ccEEECCCCEEEecCC--CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCIVKEGD--PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~IireGd--~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
....+.||.-.-.... ..+++++|++|++++.. + |++ ..|++||.+=
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-~-g~~-----~~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-E-GKT-----HALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 3456778775433333 24789999999999864 3 442 5699999753
No 74
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=27.75 E-value=63 Score=23.66 Aligned_cols=30 Identities=3% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHcCCc
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRNGGL 552 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~ 552 (569)
+.++.+++..++.|+- +.+.++.|.+.|.+
T Consensus 17 ~~t~~ela~~~~is~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 17 RITQKELAEKLGISRSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp TS-HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCcCc
Confidence 4688999999999999 99999999999976
No 75
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.49 E-value=1.5e+02 Score=32.09 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=33.0
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
..+.||...----....|+.+|++|++++...+ +|+. ....+++||++=
T Consensus 72 ~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~---~~~~L~~GD~~~ 121 (367)
T TIGR03404 72 MRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN---YIDDVGAGDLWY 121 (367)
T ss_pred EEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE---EEeEECCCCEEE
Confidence 456676654332234679999999999988754 4553 124699999764
No 76
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=26.57 E-value=99 Score=29.32 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=21.9
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 380 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 380 ~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
..|||.+|++|.+++. .+ |+. ...++||.+
T Consensus 94 ~YDEi~~VlEG~L~i~-~~-G~~-----~~A~~GDvi 123 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEIS-ID-GQT-----VTAKPGDVI 123 (152)
T ss_dssp SSEEEEEEEEEEEEEE-ET-TEE-----EEEETT-EE
T ss_pred ecceEEEEEEeEEEEE-EC-CEE-----EEEcCCcEE
Confidence 3689999999999886 34 553 457999864
No 77
>COG3817 Predicted membrane protein [Function unknown]
Probab=26.30 E-value=1e+02 Score=31.78 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=49.3
Q ss_pred HhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHH--hcCcccccccCCCHHHHHHHHhcCccEEEC
Q 008346 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLV--LGNLTVPMFQMMGKSILSEMCKCLKPVLYV 369 (569)
Q Consensus 292 ~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~l--IGN~kVplF~~ld~~~L~~L~~~lk~~~f~ 369 (569)
..++-.+++|++-.+|=+|.+-.|.. ++=+++++.|++ .|.+++--....++|+.+.-.++++-+.|-
T Consensus 30 p~r~~t~~FW~l~~~tFl~g~~lp~~----------viG~ivillAliagf~~v~~G~~~~~~~e~re~~A~rlgnrlfi 99 (313)
T COG3817 30 PVRFGTGLFWGLFSLTFLGGDRLPNI----------VIGLIVILLALIAGFGQVKIGALPELSPEEREKSANRLGNRLFI 99 (313)
T ss_pred CceecchHHHHHHHHHHhccccccch----------hHhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHHHHHhcCEeeh
Confidence 45777899999999999886433331 122234445554 466677777889999999999999888876
Q ss_pred C
Q 008346 370 Q 370 (569)
Q Consensus 370 k 370 (569)
|
T Consensus 100 P 100 (313)
T COG3817 100 P 100 (313)
T ss_pred H
Confidence 6
No 78
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=25.02 E-value=1.3e+02 Score=28.69 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=23.7
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 379 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 379 d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.++.|+++|++|++++.. + ++. ..+++||.+=
T Consensus 126 h~~~E~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 157 (185)
T PRK09943 126 HQGEEIGTVLEGEIVLTI-N-GQD-----YHLVAGQSYA 157 (185)
T ss_pred cCCcEEEEEEEeEEEEEE-C-CEE-----EEecCCCEEE
Confidence 345799999999999765 3 342 4689999653
No 79
>PF07900 DUF1670: Protein of unknown function (DUF1670); InterPro: IPR012872 The hypothetical eukaryotic proteins found in this family are of unknown function.
Probab=24.75 E-value=2.9e+02 Score=27.84 Aligned_cols=77 Identities=8% Similarity=0.068 Sum_probs=51.2
Q ss_pred eceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc
Q 008346 443 VTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEA 522 (569)
Q Consensus 443 lt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r~~~~~~~~ 522 (569)
+.++.+=.++.||++...+.+ .. . ..+++.+.....+|.+. +|
T Consensus 62 lvpV~LTl~~~ED~e~~~~~~-------------------~~---------~---elr~~rIvRl~~EAy~Q--gg---- 104 (220)
T PF07900_consen 62 LVPVILTLVDPEDIEMRNEKY-------------------GL---------S---ELRKHRIVRLTNEAYDQ--GG---- 104 (220)
T ss_pred eeeEEEEecCHHHHHHHHhhc-------------------CH---------H---HHHHHHHHHHHHHHHHc--CC----
Confidence 456677778899999877766 11 1 12333444434444442 22
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHc-C-CcCCCc
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRN-G-GLPGGR 556 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~-~-~~~~~~ 556 (569)
-+|+.+||-.++.|.- +.+-+++++++ | ++++..
T Consensus 105 lLT~~Dla~LL~~S~~TI~~~i~~yq~e~g~vvPtrG 141 (220)
T PF07900_consen 105 LLTQEDLAMLLGISPRTISKDIKEYQKEHGVVVPTRG 141 (220)
T ss_pred cccHHHHHHHHCCCHHHHHHHHHHHHHHcCceeccCC
Confidence 3789999999999988 99999999877 7 455443
No 80
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=24.54 E-value=61 Score=24.14 Aligned_cols=29 Identities=3% Similarity=0.060 Sum_probs=26.4
Q ss_pred CchhhhhHHhhcHH-HHHHHHHHHHcCCcC
Q 008346 525 KPSKFGTAIYATQF-FTYVRRSVKRNGGLP 553 (569)
Q Consensus 525 ~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~ 553 (569)
+..+|+..++.||. +.++++.|.+.|.+.
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67889999999999 999999999999874
No 81
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=23.91 E-value=1.4e+02 Score=30.67 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=0.0
Q ss_pred cCCCc-CeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 377 EGDPI-CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 377 eGd~~-~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
..+.+ +++.+|++|++++.. +|++ ..|++||++
T Consensus 75 ~~~~g~ee~iyVl~G~l~v~~--~g~~-----~~L~~Gd~~ 108 (260)
T TIGR03214 75 FGGEGIETFLFVISGEVNVTA--EGET-----HELREGGYA 108 (260)
T ss_pred CCCCceEEEEEEEeCEEEEEE--CCEE-----EEECCCCEE
No 82
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=23.47 E-value=3.3e+02 Score=26.75 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=26.7
Q ss_pred EecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 375 VKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 375 ireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+++.....|+|+|++|+..+...+ +|.. ....+++||.+=
T Consensus 91 ~H~~~~~~EiyyvlsG~g~~~l~~~~G~~---~~~~v~pGd~v~ 131 (191)
T PRK04190 91 FHAKADRAEIYYGLKGKGLMLLQDPEGEA---RWIEMEPGTVVY 131 (191)
T ss_pred EcCCCCCCEEEEEEeCEEEEEEecCCCcE---EEEEECCCCEEE
Confidence 445445569999999999877643 2221 135689999753
No 83
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=23.15 E-value=1.5e+02 Score=29.56 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=50.4
Q ss_pred cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEE
Q 008346 362 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 441 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~ 441 (569)
+.....+.||..+-.....+.|+.+|++|... .++|. +.+||+.=- ++ .+..+.+
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~---de~g~--------y~~Gd~i~~-------p~-------~~~H~p~ 182 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS---DETGV--------YGVGDFEEA-------DG-------SVQHQPR 182 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE---cCCCc--------cCCCeEEEC-------CC-------CCCcCcc
Confidence 45678899999999999999999999999964 22332 799997532 21 1223455
Q ss_pred Ee--ceeEEEEecHHHHHH
Q 008346 442 SV--TNVEAFAINTDDLRA 458 (569)
Q Consensus 442 Al--t~~ell~L~~edl~~ 458 (569)
|. ++|-++++.-..+++
T Consensus 183 a~~~~~Cicl~v~dapl~f 201 (215)
T TIGR02451 183 TVSGGDCLCLAVLDAPLRF 201 (215)
T ss_pred cCCCCCeEEEEEecCCccc
Confidence 55 448888877666553
No 84
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=21.26 E-value=1.2e+02 Score=19.42 Aligned_cols=19 Identities=53% Similarity=0.698 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 008346 486 TSKACVIQAAWCRYKKRKL 504 (569)
Q Consensus 486 ~~~~~~iq~a~rr~~~r~~ 504 (569)
+-++..||..||.+..|+.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4467899999999988764
No 85
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=20.97 E-value=2.2e+02 Score=30.76 Aligned_cols=51 Identities=20% Similarity=0.071 Sum_probs=33.6
Q ss_pred CccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEE
Q 008346 363 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfF 416 (569)
+......||...-.-=.+ .+|+++|++|+.++...| +|+. ....+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~---~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA---RTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE---EEEEECCCCEE
Confidence 445667777765443333 789999999999987643 2221 12468999954
Done!