Query 008346
Match_columns 569
No_of_seqs 454 out of 1585
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 00:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 2.5E-30 8.5E-35 271.4 10.6 155 292-463 159-334 (355)
2 4ev0_A Transcription regulator 99.9 1.7E-20 5.7E-25 180.6 19.7 189 344-561 3-202 (216)
3 1zyb_A Transcription regulator 99.8 3.5E-20 1.2E-24 181.6 19.1 190 344-561 22-225 (232)
4 3dv8_A Transcriptional regulat 99.8 7.7E-20 2.6E-24 176.4 20.1 189 344-561 7-208 (220)
5 3d0s_A Transcriptional regulat 99.8 3E-20 1E-24 180.7 16.8 188 344-560 10-215 (227)
6 3dn7_A Cyclic nucleotide bindi 99.8 4.8E-20 1.6E-24 174.9 16.5 175 344-547 11-193 (194)
7 2gau_A Transcriptional regulat 99.8 7.9E-20 2.7E-24 178.2 17.5 189 344-561 14-219 (232)
8 3ryp_A Catabolite gene activat 99.8 1.9E-19 6.6E-24 172.3 19.7 188 345-560 1-205 (210)
9 3dkw_A DNR protein; CRP-FNR, H 99.8 7.3E-20 2.5E-24 177.4 16.1 191 344-562 13-218 (227)
10 3iwz_A CAP-like, catabolite ac 99.8 1.2E-19 4E-24 176.3 17.5 194 344-560 15-225 (230)
11 3e97_A Transcriptional regulat 99.8 2.2E-19 7.5E-24 175.0 19.0 187 344-561 10-214 (231)
12 3fx3_A Cyclic nucleotide-bindi 99.8 3.2E-19 1.1E-23 174.5 18.9 183 344-556 15-211 (237)
13 2fmy_A COOA, carbon monoxide o 99.8 1.9E-19 6.7E-24 174.3 16.1 182 344-561 8-207 (220)
14 2oz6_A Virulence factor regula 99.8 9.2E-19 3.1E-23 167.2 19.9 178 351-556 1-198 (207)
15 1ft9_A Carbon monoxide oxidati 99.8 6.3E-19 2.2E-23 171.1 16.0 177 344-556 4-197 (222)
16 3kcc_A Catabolite gene activat 99.8 2.9E-18 9.8E-23 171.4 20.2 184 349-560 55-255 (260)
17 1o5l_A Transcriptional regulat 99.8 1.4E-18 4.7E-23 168.1 13.7 187 346-560 5-202 (213)
18 3e6c_C CPRK, cyclic nucleotide 99.8 6E-18 2E-22 167.4 17.7 182 345-559 15-214 (250)
19 3la7_A Global nitrogen regulat 99.7 4.4E-17 1.5E-21 160.8 17.3 181 353-561 30-232 (243)
20 2bgc_A PRFA; bacterial infecti 99.7 1E-16 3.6E-21 157.5 19.5 184 349-561 2-209 (238)
21 1wgp_A Probable cyclic nucleot 99.7 7.6E-18 2.6E-22 150.6 10.1 125 344-470 10-134 (137)
22 2pqq_A Putative transcriptiona 99.7 1.1E-16 3.8E-21 144.1 14.8 109 344-463 9-118 (149)
23 3mdp_A Cyclic nucleotide-bindi 99.7 5E-17 1.7E-21 145.4 10.6 109 344-463 10-122 (142)
24 3bpz_A Potassium/sodium hyperp 99.7 1.2E-16 4.3E-21 153.2 13.0 105 344-463 76-180 (202)
25 3ukn_A Novel protein similar t 99.7 1.6E-16 5.4E-21 153.5 12.4 106 344-463 79-185 (212)
26 3idb_B CAMP-dependent protein 99.7 7.3E-16 2.5E-20 142.0 14.5 109 344-463 42-150 (161)
27 2ptm_A Hyperpolarization-activ 99.7 7.1E-16 2.4E-20 147.3 14.1 106 344-463 75-180 (198)
28 3gyd_A CNMP-BD protein, cyclic 99.7 3.2E-15 1.1E-19 142.1 17.8 109 344-463 43-152 (187)
29 2z69_A DNR protein; beta barre 99.6 6.6E-16 2.3E-20 140.0 11.0 110 344-463 16-126 (154)
30 1orq_C Potassium channel; volt 99.6 3.7E-17 1.3E-21 160.5 2.7 202 50-343 7-214 (223)
31 3b02_A Transcriptional regulat 99.6 3.5E-15 1.2E-19 142.0 14.7 158 366-560 2-177 (195)
32 3ocp_A PRKG1 protein; serine/t 99.6 2.2E-15 7.5E-20 135.2 12.5 105 344-463 27-131 (139)
33 4f8a_A Potassium voltage-gated 99.6 6.7E-15 2.3E-19 134.4 15.2 107 344-463 31-137 (160)
34 1o7f_A CAMP-dependent RAP1 gua 99.6 6.1E-15 2.1E-19 158.9 17.4 197 344-556 46-263 (469)
35 3pna_A CAMP-dependent protein 99.6 5.7E-15 1.9E-19 135.2 13.0 105 344-463 42-146 (154)
36 1vp6_A CNBD, cyclic-nucleotide 99.6 5E-15 1.7E-19 132.1 12.0 103 344-463 15-117 (138)
37 2zcw_A TTHA1359, transcription 99.6 1.2E-14 4.2E-19 138.7 12.7 165 359-560 1-184 (202)
38 4ava_A Lysine acetyltransferas 99.6 2.5E-14 8.7E-19 147.2 15.3 107 344-463 17-124 (333)
39 2d93_A RAP guanine nucleotide 99.5 8.9E-15 3E-19 130.6 7.8 105 344-463 20-126 (134)
40 3shr_A CGMP-dependent protein 99.5 4.5E-14 1.5E-18 143.0 13.6 109 344-463 161-271 (299)
41 3shr_A CGMP-dependent protein 99.5 1.1E-13 3.8E-18 140.1 13.9 105 344-463 43-147 (299)
42 2qcs_B CAMP-dependent protein 99.5 1.8E-13 6.1E-18 137.7 14.5 109 344-463 161-271 (291)
43 3of1_A CAMP-dependent protein 99.5 8.6E-14 3E-18 135.7 11.7 106 344-463 129-234 (246)
44 3tnp_B CAMP-dependent protein 99.5 1.8E-13 6.1E-18 146.7 14.5 109 344-463 149-257 (416)
45 3of1_A CAMP-dependent protein 99.5 7.5E-14 2.6E-18 136.2 10.5 105 344-463 11-115 (246)
46 2qcs_B CAMP-dependent protein 99.5 1.5E-13 5.2E-18 138.2 12.4 105 344-463 43-147 (291)
47 3tnp_B CAMP-dependent protein 99.4 3.9E-13 1.3E-17 144.0 12.1 109 344-463 271-386 (416)
48 4din_B CAMP-dependent protein 99.4 3.1E-13 1.1E-17 142.9 8.6 109 344-463 252-362 (381)
49 4din_B CAMP-dependent protein 99.4 6.9E-13 2.4E-17 140.3 10.6 105 344-463 134-238 (381)
50 1o7f_A CAMP-dependent RAP1 gua 99.4 3.7E-12 1.3E-16 137.1 14.0 106 344-463 341-448 (469)
51 4f7z_A RAP guanine nucleotide 99.3 8.4E-12 2.9E-16 147.3 14.5 108 344-463 46-156 (999)
52 4f7z_A RAP guanine nucleotide 99.2 2.6E-11 8.7E-16 143.2 14.0 106 344-463 341-448 (999)
53 3cf6_E RAP guanine nucleotide 99.2 4.8E-11 1.6E-15 135.8 11.8 106 344-463 36-143 (694)
54 2r9r_B Paddle chimera voltage 99.2 2.3E-11 7.8E-16 133.9 7.5 51 293-343 374-424 (514)
55 2a9h_A Voltage-gated potassium 99.1 6.7E-11 2.3E-15 110.3 8.4 51 293-343 83-133 (155)
56 2ih3_C Voltage-gated potassium 99.0 3.5E-10 1.2E-14 101.2 8.4 51 293-343 60-110 (122)
57 4h33_A LMO2059 protein; bilaye 98.8 2E-09 6.9E-14 98.2 5.1 49 295-343 44-92 (137)
58 3vou_A ION transport 2 domain 98.7 6.4E-08 2.2E-12 89.1 11.7 49 295-343 53-101 (148)
59 2q67_A Potassium channel prote 98.6 2.1E-07 7.1E-12 82.1 11.7 50 294-343 49-98 (114)
60 3eff_K Voltage-gated potassium 98.6 3E-08 1E-12 90.3 4.4 51 293-343 39-89 (139)
61 3ldc_A Calcium-gated potassium 98.6 4.9E-08 1.7E-12 81.1 5.1 50 294-343 28-77 (82)
62 2k1e_A Water soluble analogue 98.6 1.1E-08 3.7E-13 88.7 0.8 50 294-343 40-89 (103)
63 3ouf_A Potassium channel prote 98.5 7.5E-08 2.6E-12 82.6 5.1 49 295-343 33-81 (97)
64 3pjs_K KCSA, voltage-gated pot 98.4 4E-08 1.4E-12 92.3 0.5 51 293-343 66-116 (166)
65 1xl4_A Inward rectifier potass 98.3 6.2E-07 2.1E-11 92.1 7.9 50 294-343 82-131 (301)
66 1p7b_A Integral membrane chann 98.1 1.6E-06 5.3E-11 90.2 4.7 50 294-343 96-145 (333)
67 2qks_A KIR3.1-prokaryotic KIR 98.1 1.8E-06 6.2E-11 89.4 5.0 50 294-343 78-127 (321)
68 3sya_A G protein-activated inw 98.0 1.5E-05 5E-10 83.0 10.3 76 294-378 91-168 (340)
69 3um7_A Potassium channel subfa 98.0 3.8E-06 1.3E-10 86.4 5.1 50 294-343 115-164 (309)
70 3ukm_A Potassium channel subfa 97.8 1.4E-05 4.7E-10 81.0 5.1 50 294-343 93-142 (280)
71 3spc_A Inward-rectifier K+ cha 97.7 6.3E-05 2.2E-09 78.3 8.8 50 294-343 94-145 (343)
72 3rvy_A ION transport protein; 97.7 7.8E-05 2.7E-09 75.2 9.2 52 292-343 178-235 (285)
73 4gx0_A TRKA domain protein; me 97.6 3.4E-05 1.2E-09 85.3 5.2 48 295-342 52-99 (565)
74 1lnq_A MTHK channels, potassiu 97.6 4.7E-06 1.6E-10 86.0 -1.9 53 295-347 46-98 (336)
75 3um7_A Potassium channel subfa 97.6 3.5E-05 1.2E-09 79.1 4.4 50 294-343 224-279 (309)
76 3ukm_A Potassium channel subfa 97.5 6.2E-05 2.1E-09 76.3 5.1 50 294-343 201-257 (280)
77 4dxw_A Navrh, ION transport pr 92.5 0.42 1.4E-05 46.0 9.0 48 294-341 165-217 (229)
78 2l53_B CAM, voltage-gated sodi 88.0 0.42 1.4E-05 32.0 3.1 22 483-504 3-24 (31)
79 2kxw_B Sodium channel protein 87.3 0.45 1.5E-05 30.8 2.8 21 483-503 3-23 (27)
80 2kyh_A KVAP, voltage-gated pot 78.2 1.1 3.7E-05 40.7 2.7 18 125-142 81-98 (147)
81 3fjs_A Uncharacterized protein 76.4 16 0.00056 30.6 9.7 66 364-450 39-104 (114)
82 3lwc_A Uncharacterized protein 72.7 8.7 0.0003 33.0 7.0 44 366-417 45-88 (119)
83 1o5u_A Novel thermotoga mariti 72.5 7.3 0.00025 32.6 6.3 47 363-417 33-79 (101)
84 3rns_A Cupin 2 conserved barre 71.8 16 0.00055 34.8 9.4 68 363-451 39-106 (227)
85 2ozj_A Cupin 2, conserved barr 69.9 25 0.00084 29.0 9.1 44 367-417 44-87 (114)
86 1yhf_A Hypothetical protein SP 68.3 37 0.0013 27.8 9.9 67 364-451 43-109 (115)
87 3bcw_A Uncharacterized protein 67.4 4.5 0.00015 35.3 3.9 45 366-417 54-98 (123)
88 3es4_A Uncharacterized protein 65.6 7.4 0.00025 33.8 4.9 45 366-417 47-91 (116)
89 2pfw_A Cupin 2, conserved barr 65.2 42 0.0014 27.5 9.6 67 364-451 37-103 (116)
90 3h8u_A Uncharacterized conserv 62.7 12 0.0004 31.6 5.7 48 364-417 42-90 (125)
91 1zvf_A 3-hydroxyanthranilate 3 62.6 7.8 0.00027 36.1 4.7 88 354-458 12-118 (176)
92 1yfu_A 3-hydroxyanthranilate-3 61.6 11 0.00039 35.0 5.6 90 353-459 11-117 (174)
93 2gu9_A Tetracenomycin polyketi 59.8 22 0.00074 28.8 6.7 47 364-417 24-73 (113)
94 4e2g_A Cupin 2 conserved barre 59.4 21 0.00073 29.9 6.8 48 363-417 43-90 (126)
95 1v70_A Probable antibiotics sy 58.9 27 0.00091 27.7 7.0 46 365-417 32-78 (105)
96 2i45_A Hypothetical protein; n 56.7 13 0.00046 30.4 4.9 68 369-456 36-103 (107)
97 2fqp_A Hypothetical protein BP 50.5 8.7 0.0003 31.2 2.6 49 364-417 21-70 (97)
98 1ors_C Potassium channel; volt 50.4 16 0.00056 31.9 4.6 17 125-141 66-82 (132)
99 1dgw_A Canavalin; duplicated s 49.4 26 0.00088 32.1 6.0 51 363-417 43-94 (178)
100 2pyt_A Ethanolamine utilizatio 48.9 23 0.00078 31.0 5.3 43 366-417 62-104 (133)
101 3es1_A Cupin 2, conserved barr 47.8 17 0.00057 33.7 4.4 48 363-416 81-128 (172)
102 2bnm_A Epoxidase; oxidoreducta 47.7 21 0.00072 32.7 5.1 49 366-417 122-173 (198)
103 2q30_A Uncharacterized protein 47.3 94 0.0032 24.8 8.7 46 366-417 38-85 (110)
104 3bu7_A Gentisate 1,2-dioxygena 45.6 15 0.0005 38.7 4.0 49 364-418 126-174 (394)
105 3ibm_A Cupin 2, conserved barr 45.5 33 0.0011 31.1 6.0 46 365-417 60-105 (167)
106 2qnk_A 3-hydroxyanthranilate 3 45.4 21 0.00071 35.8 4.8 86 354-457 9-110 (286)
107 3rns_A Cupin 2 conserved barre 44.8 44 0.0015 31.7 7.0 68 363-451 155-223 (227)
108 3d82_A Cupin 2, conserved barr 44.5 48 0.0016 26.2 6.3 54 379-453 48-101 (102)
109 4b29_A Dimethylsulfoniopropion 43.3 36 0.0012 32.7 6.1 46 366-417 137-182 (217)
110 3d0j_A Uncharacterized protein 42.8 20 0.00068 32.2 3.8 65 375-454 44-110 (140)
111 2vpv_A Protein MIF2, MIF2P; nu 42.1 27 0.00092 32.1 4.8 32 379-417 108-139 (166)
112 1y9q_A Transcriptional regulat 41.9 52 0.0018 29.9 6.9 46 365-417 108-155 (192)
113 3i7d_A Sugar phosphate isomera 41.9 28 0.00097 31.3 4.9 46 365-417 47-94 (163)
114 1o4t_A Putative oxalate decarb 41.9 49 0.0017 28.3 6.3 46 365-417 61-107 (133)
115 3l2h_A Putative sugar phosphat 41.9 25 0.00087 31.1 4.6 45 365-416 50-96 (162)
116 4axo_A EUTQ, ethanolamine util 41.7 28 0.00096 31.5 4.8 31 380-417 83-113 (151)
117 2opk_A Hypothetical protein; p 41.1 28 0.00095 29.2 4.4 34 379-417 51-84 (112)
118 3kgz_A Cupin 2 conserved barre 40.2 29 0.00098 31.2 4.6 44 367-417 50-93 (156)
119 1fi2_A Oxalate oxidase, germin 39.5 63 0.0021 30.0 7.1 52 363-417 74-130 (201)
120 2w7n_A TRFB transcriptional re 39.2 24 0.00081 29.9 3.6 40 523-562 34-79 (101)
121 3jzv_A Uncharacterized protein 38.7 28 0.00096 31.7 4.4 45 366-417 58-102 (166)
122 2q1z_B Anti-sigma factor CHRR, 38.5 59 0.002 30.3 6.7 46 361-417 125-170 (195)
123 4i4a_A Similar to unknown prot 38.4 53 0.0018 27.4 5.9 45 366-417 39-83 (128)
124 2b8m_A Hypothetical protein MJ 38.4 31 0.0011 28.5 4.4 45 366-417 32-77 (117)
125 1sfn_A Conserved hypothetical 38.0 44 0.0015 32.1 5.9 49 362-417 166-215 (246)
126 1lr5_A Auxin binding protein 1 38.0 35 0.0012 30.3 4.8 48 365-417 45-99 (163)
127 1vj2_A Novel manganese-contain 36.2 38 0.0013 28.6 4.6 45 366-417 53-97 (126)
128 3h7j_A Bacilysin biosynthesis 36.2 51 0.0017 31.5 6.0 46 363-415 36-81 (243)
129 3nw4_A Gentisate 1,2-dioxygena 36.0 31 0.0011 35.8 4.7 49 364-418 106-154 (368)
130 4e2q_A Ureidoglycine aminohydr 35.7 32 0.0011 34.1 4.5 69 365-453 74-142 (266)
131 1j58_A YVRK protein; cupin, de 35.6 63 0.0022 32.9 7.0 52 363-417 81-133 (385)
132 2d40_A Z3393, putative gentisa 35.2 30 0.001 35.5 4.4 48 364-417 103-150 (354)
133 2f4p_A Hypothetical protein TM 34.7 61 0.0021 28.4 5.9 47 365-417 52-98 (147)
134 2o1q_A Putative acetyl/propion 34.7 64 0.0022 28.4 6.0 52 363-419 46-97 (145)
135 3cew_A Uncharacterized cupin p 34.0 58 0.002 27.2 5.4 46 365-417 30-77 (125)
136 2vqa_A SLL1358 protein, MNCA; 34.0 79 0.0027 31.8 7.3 51 364-417 55-107 (361)
137 1sq4_A GLXB, glyoxylate-induce 33.4 63 0.0021 31.8 6.3 50 361-417 191-241 (278)
138 1sfn_A Conserved hypothetical 33.2 67 0.0023 30.8 6.4 43 366-417 55-97 (246)
139 3myx_A Uncharacterized protein 33.0 46 0.0016 32.4 5.0 40 370-417 55-94 (238)
140 1sef_A Conserved hypothetical 31.8 66 0.0023 31.3 6.1 48 363-417 184-232 (274)
141 1uij_A Beta subunit of beta co 31.3 51 0.0018 34.6 5.5 52 362-417 50-102 (416)
142 2o8q_A Hypothetical protein; c 31.3 49 0.0017 28.0 4.5 31 381-417 64-94 (134)
143 1y3t_A Hypothetical protein YX 31.1 80 0.0028 31.2 6.7 46 365-417 50-96 (337)
144 3bu7_A Gentisate 1,2-dioxygena 30.9 40 0.0014 35.3 4.5 77 364-461 297-376 (394)
145 2ea7_A 7S globulin-1; beta bar 30.5 58 0.002 34.4 5.8 52 362-417 62-114 (434)
146 2vqa_A SLL1358 protein, MNCA; 30.3 85 0.0029 31.6 6.9 52 363-417 236-289 (361)
147 2cav_A Protein (canavalin); vi 29.4 65 0.0022 34.2 5.9 51 363-417 88-139 (445)
148 3h7j_A Bacilysin biosynthesis 29.4 70 0.0024 30.5 5.7 46 366-418 150-196 (243)
149 2oa2_A BH2720 protein; 1017534 29.1 86 0.003 27.2 5.9 50 366-416 48-98 (148)
150 1j58_A YVRK protein; cupin, de 29.0 1.1E+02 0.0038 31.0 7.6 52 363-417 259-312 (385)
151 3ht1_A REMF protein; cupin fol 28.2 42 0.0014 28.6 3.5 33 380-417 58-90 (145)
152 1rc6_A Hypothetical protein YL 27.8 52 0.0018 31.8 4.5 45 366-417 64-110 (261)
153 3myx_A Uncharacterized protein 26.3 65 0.0022 31.3 4.8 45 366-417 172-216 (238)
154 1sq4_A GLXB, glyoxylate-induce 26.0 54 0.0018 32.3 4.3 46 365-417 72-119 (278)
155 4dck_A Sodium channel protein 25.9 39 0.0013 31.2 3.0 23 483-505 127-149 (168)
156 3ebr_A Uncharacterized RMLC-li 25.7 75 0.0026 28.7 4.9 71 362-455 43-117 (159)
157 4e2q_A Ureidoglycine aminohydr 23.1 76 0.0026 31.3 4.7 53 358-417 183-236 (266)
158 1juh_A Quercetin 2,3-dioxygena 22.8 1.1E+02 0.0036 31.2 5.9 47 368-417 55-105 (350)
159 2d5f_A Glycinin A3B4 subunit; 22.5 1.7E+02 0.0057 31.5 7.6 60 356-417 362-423 (493)
160 3lag_A Uncharacterized protein 21.8 23 0.00079 29.1 0.5 51 363-417 19-70 (98)
161 1fxz_A Glycinin G1; proglycini 21.5 1.5E+02 0.0052 31.6 7.0 54 362-417 339-394 (476)
162 1rc6_A Hypothetical protein YL 21.0 70 0.0024 30.8 3.9 48 363-417 181-229 (261)
163 3cjx_A Protein of unknown func 21.0 1.1E+02 0.0038 27.8 5.0 49 363-419 45-93 (165)
164 3fz3_A Prunin; TREE NUT allerg 20.9 1.9E+02 0.0065 31.4 7.6 60 356-417 389-450 (531)
165 3c3v_A Arachin ARAH3 isoform; 20.9 1.7E+02 0.0057 31.7 7.1 60 356-417 367-428 (510)
166 3o14_A Anti-ecfsigma factor, C 20.3 1.3E+02 0.0044 28.7 5.5 64 364-452 46-109 (223)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.96 E-value=2.5e-30 Score=271.41 Aligned_cols=155 Identities=22% Similarity=0.381 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc---------------------ccccccC
Q 008346 292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL---------------------TVPMFQM 350 (569)
Q Consensus 292 ~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~---------------------kVplF~~ 350 (569)
+..|..|+||++.||||+||||++|.+..|+++++++|++|++++|+.+|++ ++|+|++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~lf~~ 238 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVRNWQLVAAVPLFQK 238 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhccccccc
Confidence 4568899999999999999999999999999999999999999999999998 7899999
Q ss_pred CCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCC
Q 008346 351 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPL 430 (569)
Q Consensus 351 ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~ 430 (569)
++++++++++..++++.|+|||+|++|||+++++|||.+|.++++..+ + ..+++||+|||.++ +.
T Consensus 239 ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~------~~l~~G~~fGe~~~---l~---- 303 (355)
T 3beh_A 239 LGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMAL---IS---- 303 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--e------eEECCCCEEeehHH---hC----
Confidence 999999999999999999999999999999999999999999998754 2 35899999999865 21
Q ss_pred CCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 431 SNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 431 ~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
..+++++++|.++|+++.+++++++++++++
T Consensus 304 --~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~ 334 (355)
T 3beh_A 304 --GEPRSATVSAATTVSLLSLHSADFQMLCSSS 334 (355)
T ss_dssp ---------------------------------
T ss_pred --CCCcceEEEECccEEEEEEeHHHHHHHHHHC
Confidence 2357899999999999999999999999999
No 2
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.86 E-value=1.7e-20 Score=180.55 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=153.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEe-cCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~-dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++.. .+|++. .+..+++||+|||..+.
T Consensus 3 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 3 GSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQER--TLALLGPGELFGEMSLL 80 (216)
T ss_dssp -CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEE--EEEEECTTCEECHHHHH
T ss_pred CChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEeehhhc
Confidence 579999999999999999999999999999999999999999999999999886 355543 35889999999998652
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+ ..+++.+++|+++|+++.+++++|.+++.++ |.+.......+....+...++
T Consensus 81 ---~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~~~ 133 (216)
T 4ev0_A 81 ---D------EGERSASAVAVEDTELLALFREDYLALIRRL------------------PLVAHNLAALLARRLREADLE 133 (216)
T ss_dssp ---H------CCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C------CCCcceEEEEcCCEEEEEEcHHHHHHHHHHC------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 2 1257899999999999999999999999999 566666666666656665666
Q ss_pred Hhhhhhhhhhhhhhhhh--------hhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 503 KLEGSLYAKENILQDQK--------AEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~~~--------~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
.......++++|+..-. ... +.++.++|.-++.||. +.++++.+++.|.+..++=.|.+
T Consensus 134 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 134 LDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 66665667777753221 112 5789999999999999 99999999999998766644433
No 3
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.84 E-value=3.5e-20 Score=181.63 Aligned_cols=190 Identities=13% Similarity=0.157 Sum_probs=155.0
Q ss_pred ccccccCCCHHHHHHHHhc--CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecch
Q 008346 344 TVPMFQMMGKSILSEMCKC--LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEEL 420 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~--lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~ 420 (569)
++|+|++++++.++.++.. ++.+.|++||+|+++||+++++|||.+|.++++..+ +|++. .+..+++||+|||..
T Consensus 22 ~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~l~~~~~G~~fG~~~ 99 (232)
T 1zyb_A 22 QLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT--VIEQIEAPYLIEPQS 99 (232)
T ss_dssp GSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE--EEEEEESSEEECGGG
T ss_pred cCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEE--EEEEccCCCeeeehH
Confidence 7899999999999999998 999999999999999999999999999999998753 45443 358899999999986
Q ss_pred hhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHH
Q 008346 421 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 500 (569)
Q Consensus 421 L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~ 500 (569)
+ ++ +.+++.++++|+++|+++.|++++|.+++.++ |.+.......+....+...
T Consensus 100 ~---~~-----~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~ 153 (232)
T 1zyb_A 100 L---FG-----MNTNYASSYVAHTEVHTVCISKAFVLSDLFRY------------------DIFRLNYMNIVSNRAQNLY 153 (232)
T ss_dssp G---SS-----SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGS------------------HHHHHHHHHHHHHHHHHHH
T ss_pred H---hC-----CCCCCceEEEEccceEEEEEEHHHHHHHhccC------------------HHHHHHHHHHHHHHHHHHH
Confidence 5 22 22347899999999999999999999999988 6666666666666666666
Q ss_pred HHHhhhhhhhhhhhhhhhhh---------hc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 501 KRKLEGSLYAKENILQDQKA---------EA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 501 ~r~~~~~~~~~e~r~~~~~~---------~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
++.......++++|+..-+. .. +.++.++|.-+++||. +.++++.++++|.+...+=.|.+
T Consensus 154 ~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I 225 (232)
T 1zyb_A 154 SRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILI 225 (232)
T ss_dssp HHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEE
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEE
Confidence 66666666778888542211 11 4789999999999999 99999999999998766544444
No 4
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.84 E-value=7.7e-20 Score=176.39 Aligned_cols=189 Identities=10% Similarity=0.040 Sum_probs=153.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcE--Eecch
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDF--WGEEL 420 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~Gdf--FGE~~ 420 (569)
++|+|++++++.++.+...++.+.|+||++|+++||+++.+|||.+|.++++..+ +|++. .+..+++||+ |||..
T Consensus 7 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~~~g~~~ 84 (220)
T 3dv8_A 7 YFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREI--TLYRLFDMDMCLLSASC 84 (220)
T ss_dssp SCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEESGGGGG
T ss_pred hChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEE--EEEecCCCCeeehhHHH
Confidence 5899999999999999999999999999999999999999999999999998853 55543 3588999999 68876
Q ss_pred hhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHH
Q 008346 421 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYK 500 (569)
Q Consensus 421 L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~ 500 (569)
+ ++ ..+++.+++|+++|+++.+++++|.+++.++ |.+..+....+...++...
T Consensus 85 ~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~ 137 (220)
T 3dv8_A 85 I---MR------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDS------------------APVANYTNELMATRFSDVM 137 (220)
T ss_dssp G---CT------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
T ss_pred H---hC------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHH
Confidence 5 22 2357899999999999999999999999999 5666666555555555555
Q ss_pred HHHhhhhhhhhhhhhhhhh---h------hcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 501 KRKLEGSLYAKENILQDQK---A------EAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 501 ~r~~~~~~~~~e~r~~~~~---~------~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
++.......++++|+..-. . .-+.++.++|..++.||. +.+.++.++++|.+..++=.|.+
T Consensus 138 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 138 WLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 6665555677777753111 1 116789999999999999 99999999999998776644443
No 5
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.84 E-value=3e-20 Score=180.69 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=148.1
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+.
T Consensus 10 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~G~~~~~ 87 (227)
T 3d0s_A 10 RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGREN--LLTIMGPSDMFGELSIF 87 (227)
T ss_dssp TSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEESCHHHH
T ss_pred cChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEE--EEEEecCCCEEeeHHHc
Confidence 7899999999999999999999999999999999999999999999999998864 45543 35889999999998652
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+ ..+++++++|+++|+++.|++++|.+++.++ |.+.......+....+...++
T Consensus 88 ---~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 140 (227)
T 3d0s_A 88 ---D------PGPRTSSATTITEVRAVSMDRDALRSWIADR------------------PEISEQLLRVLARRLRRTNNN 140 (227)
T ss_dssp ---S------CSCCSSEEEESSCEEEEEEEHHHHHHTTSSC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C------CCCceeEEEEcccEEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 2 1257899999999999999999999999888 444444444444444444444
Q ss_pred Hhhhhhhhhhhhhhh---------------hhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 503 KLEGSLYAKENILQD---------------QKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~---------------~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
.......++++|+.. +.... +.++.++|..+++||. +.++++.+++.|.+..++=.|.
T Consensus 141 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~ 215 (227)
T 3d0s_A 141 LADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVL 215 (227)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 444445556665321 11122 5799999999999999 9999999999999876653333
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.83 E-value=4.8e-20 Score=174.91 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=119.3
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecc-hh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEE-LA 421 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~-~L 421 (569)
++|+|.+++++.++.+...++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++||+|||. ++
T Consensus 11 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~--~~~~~~~g~~~ge~~~~ 88 (194)
T 3dn7_A 11 HIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ--TTQFAIENWWLSDYMAF 88 (194)
T ss_dssp HHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEECCHHHH
T ss_pred HHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE--EEEEccCCcEEeehHHH
Confidence 5799999999999999999999999999999999999999999999999998863 55544 35889999999986 33
Q ss_pred hhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 008346 422 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKK 501 (569)
Q Consensus 422 ~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~ 501 (569)
++ ..++.++++|+++|+++.+++++|.+++.++ |.+..+....+....+...+
T Consensus 89 ---~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~l~~~~~ 141 (194)
T 3dn7_A 89 ---QK------QQPADFYIQSVENCELLSITYTEQENLFERI------------------PALERYFRLVYQKSFAAAQL 141 (194)
T ss_dssp ---HH------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------TTHHHHHHHHHHHHHHHHHH
T ss_pred ---hc------CCCCceEEEEECCEEEEEEeHHHHHHHHHhC------------------HHHHHHHHHHHHHHHHHHHH
Confidence 11 2367899999999999999999999999999 78888888888887887777
Q ss_pred HHhhhhhhhhhhhhhhhh----hh-cCCCchhhhhHHhhcHH-HHHHHHHHH
Q 008346 502 RKLEGSLYAKENILQDQK----AE-AGGKPSKFGTAIYATQF-FTYVRRSVK 547 (569)
Q Consensus 502 r~~~~~~~~~e~r~~~~~----~~-~~~~~~~~~~~~~~sr~-~~~~~~~~~ 547 (569)
|.......++++|+..-. .. .+.++.++|.-+|.||. +.+.++.+.
T Consensus 142 ~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 142 RSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HHHHHHHC--------------------------------------------
T ss_pred HHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 877777888999964332 11 26789999999999999 998888764
No 7
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.83 E-value=7.9e-20 Score=178.24 Aligned_cols=189 Identities=13% Similarity=0.128 Sum_probs=147.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+|||+|+++||+++++|||.+|.++++..+ +|++. .+..+++||+|||..+.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~--~~~~~~~G~~~G~~~~~ 91 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH--ISRIVKPGQFFGMRPYF 91 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCC--EEEEECTTCEESHHHHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEeCCCCEeeeehhh
Confidence 6899999999999999999999999999999999999999999999999998753 44443 35889999999998652
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+ ..++..+++|+++|+++.|++++|.+++.++ |.+.......+...++...++
T Consensus 92 ---~------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 144 (232)
T 2gau_A 92 ---A------EETCSSTAIAVENSKVLAIPVEAIEALLKGN------------------TSFCRYFLKALAKELGYAERR 144 (232)
T ss_dssp ---H------TSCCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C------CCCcceEEEEecceEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1257899999999999999999999999999 455555555555555554555
Q ss_pred Hhhhhhhhhhhhhhhh--------------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 503 KLEGSLYAKENILQDQ--------------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~~--------------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
.......++++|+..- .... +.++.++|.-+++||. +.+.++.++++|.+...+=.|.+
T Consensus 145 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 145 TVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 5444455566663211 1112 6789999999999999 99999999999998776533443
No 8
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.83 E-value=1.9e-19 Score=172.35 Aligned_cols=188 Identities=10% Similarity=0.128 Sum_probs=140.9
Q ss_pred cccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhh
Q 008346 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 345 VplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+++++.++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+
T Consensus 1 ~~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~~-- 76 (210)
T 3ryp_A 1 MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGL-- 76 (210)
T ss_dssp ------CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEE--EEEEEETTCEESCTTT--
T ss_pred CcCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEeeeHHH--
Confidence 367888999999999999999999999999999999999999999999998863 55543 3588999999999865
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+ .+.+++.++++|+++|+++.+++++|.+++.++ |.+..+....+....+...++.
T Consensus 77 -~-----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~ 132 (210)
T 3ryp_A 77 -F-----EEGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKV 132 (210)
T ss_dssp -T-----STTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred -h-----cCCCCceEEEEECCcEEEEEEcHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223367899999999999999999999999998 4444444444444444444444
Q ss_pred hhhhhhhhhhhhhhh--------------hhh-cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 504 LEGSLYAKENILQDQ--------------KAE-AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~--------------~~~-~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
......++++|+..- ... -+.++.++|.-++.||. +.+.++.|++.|.+..++=.|.
T Consensus 133 ~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 205 (210)
T 3ryp_A 133 GNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIV 205 (210)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEE
Confidence 444444555553111 001 15789999999999999 9999999999999887764443
No 9
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.83 E-value=7.3e-20 Score=177.39 Aligned_cols=191 Identities=9% Similarity=0.102 Sum_probs=145.6
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+
T Consensus 13 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~~~~- 89 (227)
T 3dkw_A 13 SHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNERNTFAEAMM- 89 (227)
T ss_dssp TSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCB--CCCEECTTEEESCTTT-
T ss_pred cChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEeeeHHh-
Confidence 6899999999999999999999999999999999999999999999999998753 45443 3578999999999864
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+. +.|.+..+++|+++|+++.+++++|.+++.++ |.+.......+....+...++
T Consensus 90 --~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 144 (227)
T 3dkw_A 90 --FM-----DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDN------------------TPLALALLAKLSTRLHQRIDE 144 (227)
T ss_dssp --TT-----TCSBCSSCEEESSCCEEEEEESHHHHHHHSSC------------------THHHHHHHHHHHHHHHHHHHH
T ss_pred --cC-----CCCCCceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 22337899999999999999999999999988 333333333333333333333
Q ss_pred Hhhhhhhhhhhhhhh------------hhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccceec
Q 008346 503 KLEGSLYAKENILQD------------QKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITLA 562 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~------------~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~~ 562 (569)
.......++++|+.. +.... +.++.++|.-+++||. +.+.++.+++.|.+...+=.|.+.
T Consensus 145 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 218 (227)
T 3dkw_A 145 IETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISIL 218 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEES
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEe
Confidence 333334445555321 11122 5789999999999999 999999999999988776455443
No 10
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.2e-19 Score=176.30 Aligned_cols=194 Identities=10% Similarity=0.128 Sum_probs=137.6
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
+.|+|.+++++.++.+...++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++||+|||..+
T Consensus 15 ~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~~~~- 91 (230)
T 3iwz_A 15 NATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDREL--VLGYFGSGEFVGEMGL- 91 (230)
T ss_dssp -------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEESCGGG-
T ss_pred hcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEEehhh-
Confidence 6799999999999999999999999999999999999999999999999998754 55543 3588999999999865
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+. +.++++++++|+++|+++.+++++|.+++.++. +..+ |.+.......+....+...++
T Consensus 92 --~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~-~~~~------------p~~~~~~~~~l~~~l~~~~~~ 151 (230)
T 3iwz_A 92 --FI-----ESDTREVILRTRTQCELAEISYERLQQLFQTSL-SPDA------------PRILYAIGVQLSKRLLDTTRK 151 (230)
T ss_dssp --TS-----CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTT-GGGH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --hc-----CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhc-ccCC------------cHHHHHHHHHHHHHHHHHHHH
Confidence 22 223678999999999999999999999998760 0111 122222222222223333334
Q ss_pred Hhhhhhhhhhhhhhhhh---------------hhcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 503 KLEGSLYAKENILQDQK---------------AEAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~~~---------------~~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
.......++++|+..-+ ..-+.++.++|.-+++||. +.+.|+.|+++|.+...+=.|.
T Consensus 152 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 225 (230)
T 3iwz_A 152 ASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVV 225 (230)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEE
Confidence 43344445555532110 0115789999999999999 9999999999999877764443
No 11
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.82 E-value=2.2e-19 Score=174.98 Aligned_cols=187 Identities=13% Similarity=0.152 Sum_probs=141.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+
T Consensus 10 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~~- 86 (231)
T 3e97_A 10 RSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER--VLGDIYAPGVVGETAV- 86 (231)
T ss_dssp TSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE--EEEEEESSEEESTTTT-
T ss_pred cChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE--EEEecCCCCEEeeHHH-
Confidence 6899999999999999999999999999999999999999999999999998864 55543 3588999999999865
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
++ ..++..+++|+++|+++.+++++|.+++.++ |.+.......+....+...++
T Consensus 87 --~~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 140 (231)
T 3e97_A 87 --LA------HQERSASVRALTPVRTLMLHREHFELILRRH------------------PRVLWNLAEMLARRVTFLNDE 140 (231)
T ss_dssp --TC------CCCCCEEEEESSCEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred --hC------CCCceEEEEECCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 22 1367899999999999999999999999998 333332222222222222222
Q ss_pred Hhhhhhhhhh-hhhhh--------------hhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 503 KLEGSLYAKE-NILQD--------------QKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 503 ~~~~~~~~~e-~r~~~--------------~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
.. ...+++ +|+.. +.... +.++.++|.-+++||. +.+.|+.|++.|.+...+=.|.+
T Consensus 141 ~~--~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 214 (231)
T 3e97_A 141 LI--AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTL 214 (231)
T ss_dssp HH--HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEE
T ss_pred HH--HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 22 233333 44210 11122 6799999999999999 99999999999998777644433
No 12
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.82 E-value=3.2e-19 Score=174.46 Aligned_cols=183 Identities=9% Similarity=0.002 Sum_probs=149.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.|+++..+ +|++. .+..+++||+|||..+.
T Consensus 15 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~~~~~ 92 (237)
T 3fx3_A 15 NSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEA--VVSVFTRGESFGEAVAL 92 (237)
T ss_dssp TSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTEEECHHHHH
T ss_pred CCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEeCCCCEechHHHh
Confidence 6899999999999999999999999999999999999999999999999998853 55543 35889999999998752
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKR 502 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r 502 (569)
+ ..+++.+++|+++|+++.+++++|..++.++ |.+.......+....+...++
T Consensus 93 ---~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~ 145 (237)
T 3fx3_A 93 ---R------NTPYPVSAEAVTPCEVMHIPSPVFVSLMRRD------------------PEICISILATTFGHLHSLVAQ 145 (237)
T ss_dssp ---H------TCCCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---c------CCCCCceEEECCceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1257899999999999999999999999999 566655555555555555666
Q ss_pred Hhhhhhhhhhhhhhhh-----------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCc
Q 008346 503 KLEGSLYAKENILQDQ-----------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 503 ~~~~~~~~~e~r~~~~-----------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
.......++++|+..- .... +.++.++|.-+++||. +.+.++.|+++|.. ..+
T Consensus 146 ~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~-~~~ 211 (237)
T 3fx3_A 146 LEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVT-VKR 211 (237)
T ss_dssp HHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEE-CCT
T ss_pred HHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE-eeC
Confidence 6666667778875321 1112 5789999999999999 99999999999964 444
No 13
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.81 E-value=1.9e-19 Score=174.29 Aligned_cols=182 Identities=10% Similarity=0.122 Sum_probs=145.0
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++...+|++. .+..+++||+|||
T Consensus 8 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~~G~----- 80 (220)
T 2fmy_A 8 DTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEF--TLAILEAGDIFCT----- 80 (220)
T ss_dssp SSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEE--EEEEEETTCEEES-----
T ss_pred cChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEeCC-----
Confidence 679999999999999999999999999999999999999999999999999654555544 3588999999998
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
++.++++|+++|+++.+++++|.+++.++ |.+.......+...++...++.
T Consensus 81 -----------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~~~~~~~~~~~~~ 131 (220)
T 2fmy_A 81 -----------HTRAFIQAMEDTTILYTDIRNFQNIVVEF------------------PAFSLNMVKVLGDLLKNSLTII 131 (220)
T ss_dssp -----------CSSSEEEESSSEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccceEEEEcCcEEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 24579999999999999999999999999 5555555555555555555555
Q ss_pred hhhhhhhhhhhhhh---------------hhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCC-ccccee
Q 008346 504 LEGSLYAKENILQD---------------QKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGG-RVNITL 561 (569)
Q Consensus 504 ~~~~~~~~e~r~~~---------------~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~-~~~~~~ 561 (569)
......++++|+.. +.... +.++.++|..+++||. +.+.++.+++.|.+... +=.|.+
T Consensus 132 ~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 132 NGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 44445556666321 11122 6789999999999999 99999999999998764 424443
No 14
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.81 E-value=9.2e-19 Score=167.23 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=135.2
Q ss_pred CCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCC
Q 008346 351 MGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDP 429 (569)
Q Consensus 351 ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s 429 (569)
|+++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++||+|||..+ +.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~~~~---~~--- 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREM--IIGYLNSGDFFGELGL---FE--- 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEESCTTT---CC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCCcccHHH---hc---
Confidence 689999999999999999999999999999999999999999998764 45543 3588999999999865 22
Q ss_pred CCCCC---CcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhh
Q 008346 430 LSNIP---HSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEG 506 (569)
Q Consensus 430 ~~~~~---~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~ 506 (569)
+.+ ++.++++|+++|+++.+++++|.+++.++ |.+.......+....+...++....
T Consensus 73 --~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~~~~~~~~~~~l 132 (207)
T 2oz6_A 73 --KEGSEQERSAWVRAKVECEVAEISYAKFRELSQQD------------------SEILYTLGSQMADRLRKTTRKVGDL 132 (207)
T ss_dssp -------CBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 57899999999999999999999999998 3443333333333333333344333
Q ss_pred hhhhhhhhhhhhh---------------hhcCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCc
Q 008346 507 SLYAKENILQDQK---------------AEAGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 507 ~~~~~e~r~~~~~---------------~~~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
...++++|+..-. ..-+.++.++|.-+++||. +.++++.+++.|.+...+
T Consensus 133 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 133 AFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp HHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 3445555531110 0115789999999999999 999999999999987655
No 15
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.80 E-value=6.3e-19 Score=171.12 Aligned_cols=177 Identities=9% Similarity=0.071 Sum_probs=142.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++...+|++. .+..+++|++|| .
T Consensus 4 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~fG-~---- 76 (222)
T 1ft9_A 4 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREI--SLFYLTSGDMFC-M---- 76 (222)
T ss_dssp CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEE--EEEEEETTCEEE-S----
T ss_pred cchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEec-C----
Confidence 579999999999999999999999999999999999999999999999999744456654 358899999999 1
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+++++++|+++|+++.|++++|.+++.++ |.+.......+...++...++.
T Consensus 77 -----------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~ 127 (222)
T 1ft9_A 77 -----------HSGCLVEATERTEVRFADIRTFEQKLQTC------------------PSMAWGLIAILGRALTSCMRTI 127 (222)
T ss_dssp -----------CSSCEEEESSCEEEEEECHHHHHHHHHHC------------------GGGHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCEEEEEccceEEEEEeHHHHHHHHHHC------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999 4555554445544445545555
Q ss_pred hhhhhhhhhhhhhhh---------------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCc
Q 008346 504 LEGSLYAKENILQDQ---------------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~---------------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
......++++|+..- .... +.++.++|..+++||. +.++++.+++.|.+...+
T Consensus 128 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~ 197 (222)
T 1ft9_A 128 EDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQG 197 (222)
T ss_dssp HHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECS
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcC
Confidence 444455566664211 1112 5789999999999999 999999999999987654
No 16
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.79 E-value=2.9e-18 Score=171.41 Aligned_cols=184 Identities=10% Similarity=0.129 Sum_probs=139.5
Q ss_pred cCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCC
Q 008346 349 QMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDP 427 (569)
Q Consensus 349 ~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~ 427 (569)
..++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++. .+..+++|++|||..+ +
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~--~~~~~~~G~~~Ge~~~---~-- 127 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM--ILSYLNQGDFIGELGL---F-- 127 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEE--EEEEEETTCEESCTTT---T--
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEE--EEEEcCCCCEEeehHH---h--
Confidence 45899999999999999999999999999999999999999999998863 55543 3588999999999865 1
Q ss_pred CCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 008346 428 DPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 507 (569)
Q Consensus 428 ~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~ 507 (569)
.+.++++++++|+++|+++.|++++|.+++.++ |.+.......+..-.+...++.....
T Consensus 128 ---~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~------------------p~l~~~l~~~l~~~l~~~~~~~~~l~ 186 (260)
T 3kcc_A 128 ---EEGQERSAWVRAKTACEVAEISYKKFRQLIQVN------------------PDILMRLSAQMARRLQVTSEKVGNLA 186 (260)
T ss_dssp ---STTCBCCSEEEESSCEEEEEEEHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCceEEEECCCeEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223367899999999999999999999999999 44444444444444444444444444
Q ss_pred hhhhhhhhhhhh--------------hh-cCCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 508 LYAKENILQDQK--------------AE-AGGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 508 ~~~~e~r~~~~~--------------~~-~~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
..++++|+..-+ .. -+.++.++|..+++||. +.+.|+.|++.|.+...+=.|.
T Consensus 187 ~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~ 255 (260)
T 3kcc_A 187 FLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIV 255 (260)
T ss_dssp HCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 455555532110 01 15789999999999999 9999999999999877764443
No 17
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.77 E-value=1.4e-18 Score=168.08 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=102.2
Q ss_pred ccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhc
Q 008346 346 PMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSA 424 (569)
Q Consensus 346 plF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wa 424 (569)
|.|.+.++...+.+...++.+.|+||++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~~~~--- 79 (213)
T 1o5l_A 5 KIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL--EIDEIKPVQIIASGFI--- 79 (213)
T ss_dssp --------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE--EEEEECSSEESSGGGT---
T ss_pred ccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEeeeHHH---
Confidence 77888899999999999999999999999999999999999999999998763 55543 3588999999999865
Q ss_pred CCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHh
Q 008346 425 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL 504 (569)
Q Consensus 425 ld~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~ 504 (569)
+ .+.+++..+++|+++|+++.+++++|.+++.++ |.+.......+....+...++..
T Consensus 80 ~-----~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~~~~~~~~~~ 136 (213)
T 1o5l_A 80 F-----SSEPRFPVNVVAGENSKILSIPKEVFLDLLMKD------------------RELLLFFLKDVSEHFRVVSEKLF 136 (213)
T ss_dssp T-----SSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-----cCCCCceEEEEEccceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222367899999999999999999999999999 56643333333333444456666
Q ss_pred hhhhhhhhhhhhhh---h-----hhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 505 EGSLYAKENILQDQ---K-----AEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 505 ~~~~~~~e~r~~~~---~-----~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
.....++++|+..- . ... +.++.++|.-+++||. +.+.++.|++.|.+...+=.|.
T Consensus 137 ~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~ 202 (213)
T 1o5l_A 137 FLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIK 202 (213)
T ss_dssp HHHCC-------------------------------------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEE
Confidence 66667788885322 1 112 5789999999999999 9999999999999877653333
No 18
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.77 E-value=6e-18 Score=167.40 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=145.6
Q ss_pred cccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhh
Q 008346 345 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 345 VplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
+|+ ..+++++++.+...++.+.|+||++|+++||+++.+|||.+|.|+++..+ +|++. .+..+++|++||| .+
T Consensus 15 ~p~-~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~-~l-- 88 (250)
T 3e6c_C 15 IPD-NFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK--LLYYAGGNSLIGK-LY-- 88 (250)
T ss_dssp SSB-SCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECC-CS--
T ss_pred cch-hhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEee-ec--
Confidence 455 89999999999999999999999999999999999999999999998863 55554 3588999999999 43
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+ + . +..+++|+++|+++.+++++|.+++.++ |.+.......+....+...++.
T Consensus 89 --~-----~-~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~~~~ 141 (250)
T 3e6c_C 89 --P-----T-G-NNIYATAMEPTRTCWFSEKSLRTVFRTD------------------EDMIFEIFKNYLTKVAYYARQV 141 (250)
T ss_dssp --C-----C-S-CCEEEEESSSEEEEEECHHHHHHHHHHC------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred --C-----C-C-CceEEEEcccEEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 3 6789999999999999999999999998 5555555555555555555555
Q ss_pred hhhhhhhhhhhhhhh---------------hhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccc
Q 008346 504 LEGSLYAKENILQDQ---------------KAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNI 559 (569)
Q Consensus 504 ~~~~~~~~e~r~~~~---------------~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~ 559 (569)
......++++|+..- .... +.++.++|.-+++||. +.+.++.|+++|.+...+=.|
T Consensus 142 ~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i 214 (250)
T 3e6c_C 142 AEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKI 214 (250)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEE
Confidence 555566677764211 1112 6799999999999999 999999999999987665333
No 19
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.73 E-value=4.4e-17 Score=160.80 Aligned_cols=181 Identities=12% Similarity=0.085 Sum_probs=136.9
Q ss_pred HHHHHHHHhcCc---cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCC
Q 008346 353 KSILSEMCKCLK---PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPD 428 (569)
Q Consensus 353 ~~~L~~L~~~lk---~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~ 428 (569)
+++++.+..... .+.|+|||+|+++||+++.+|||.+|.|+++..+ +|++. .+..+++||+|||..+. +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~--~l~~~~~g~~~G~~~~~---~-- 102 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI--TVALLRENSVFGVLSLL---T-- 102 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE--EEEEECTTCEESCHHHH---S--
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEcchHHh---C--
Confidence 678888888888 9999999999999999999999999999998754 55544 35889999999998652 2
Q ss_pred CCCCCC-CcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhh
Q 008346 429 PLSNIP-HSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGS 507 (569)
Q Consensus 429 s~~~~~-~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~ 507 (569)
+.| ++..+++|+++|+++.+++++|.+++.++ |.+.......+....+...++.....
T Consensus 103 ---~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~l~~~l~~~l~~~~~~~~~l~ 161 (243)
T 3la7_A 103 ---GNKSDRFYHAVAFTPVELLSAPIEQVEQALKEN------------------PELSMLMLRGLSSRILQTEMMIETLA 161 (243)
T ss_dssp ---SCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTC------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCcceEEEEEccceEEEEEcHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122 24589999999999999999999999988 44444444444443444344444444
Q ss_pred hhhhhhhhh---------------hhhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCccccee
Q 008346 508 LYAKENILQ---------------DQKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 508 ~~~~e~r~~---------------~~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
..++++|+. ++.... +.++.++|.-+++||. +.++|+.|+++|.+...+=.|.+
T Consensus 162 ~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 162 HRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp CSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 455566532 111122 6789999999999999 99999999999998877644444
No 20
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.73 E-value=1e-16 Score=157.46 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=132.4
Q ss_pred cCCCHHHHHHHHh--cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcC
Q 008346 349 QMMGKSILSEMCK--CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSAL 425 (569)
Q Consensus 349 ~~ld~~~L~~L~~--~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wal 425 (569)
++++++.++.+.. .++.+.|+||++|+++||+++++|||.+|.|+++..+ +|++.. +..+ +|++|||..+ +
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~---~ 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGF---I 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBC---T
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhh---h
Confidence 4688999999885 5999999999999999999999999999999998853 555543 4677 9999999865 2
Q ss_pred CCCCCCCCCC-cccEEEEe-ceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHH
Q 008346 426 DPDPLSNIPH-SNCALISV-TNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 426 d~~s~~~~~~-st~tV~Al-t~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+ +.++ +..++.|+ ++|+++.|++++|.+++.++ |.+.......+....+...++.
T Consensus 76 ~-----~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~------------------p~~~~~~~~~l~~~l~~~~~~~ 132 (238)
T 2bgc_A 76 D-----TETSVGYYNLEVISEQATAYVIKINELKELLSKN------------------LTHFFYVFQTLQKQVSYSLAKF 132 (238)
T ss_dssp T-----TCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-----CCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 35677888 59999999999999999998 3333333333333333333333
Q ss_pred hhhhhhhhhhhhh---------------hhhhhc--CCCchhhhhHHhhcH-H-HHHHHHHHHHcCCcCCCccccee
Q 008346 504 LEGSLYAKENILQ---------------DQKAEA--GGKPSKFGTAIYATQ-F-FTYVRRSVKRNGGLPGGRVNITL 561 (569)
Q Consensus 504 ~~~~~~~~e~r~~---------------~~~~~~--~~~~~~~~~~~~~sr-~-~~~~~~~~~~~~~~~~~~~~~~~ 561 (569)
......++++|+. ++.... +.++.+||.-+++|| . +.+.|+.+++.|.+...+=.|.+
T Consensus 133 ~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 133 NDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 3333444444421 111222 688999999999999 7 99999999999998765533433
No 21
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.73 E-value=7.6e-18 Score=150.56 Aligned_cols=125 Identities=42% Similarity=0.734 Sum_probs=101.8
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|++||+|+++||+++.+|||++|.+++...++|++..+.+..+++||+|||..+.|
T Consensus 10 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~ 89 (137)
T 1wgp_A 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTW 89 (137)
T ss_dssp SCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHH
T ss_pred cCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHH
Confidence 68999999999999999999999999999999999999999999999999664455654332234899999999997422
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhccc
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHN 470 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s 470 (569)
+++..+....++++++++|+++|+++.|++++|++++.++ +.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~--p~l~~ 134 (137)
T 1wgp_A 90 ALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF--RRSGP 134 (137)
T ss_dssp HHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHH--CCCTT
T ss_pred HhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHC--HhhHh
Confidence 3343221222257899999999999999999999999999 55544
No 22
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.71 E-value=1.1e-16 Score=144.10 Aligned_cols=109 Identities=19% Similarity=0.318 Sum_probs=97.3
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.++++..+ +|++. .+..+++|++|||..+
T Consensus 9 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G~~~~- 85 (149)
T 2pqq_A 9 RNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGREN--MLAVVGPSELIGELSL- 85 (149)
T ss_dssp SSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEE--EEEEECTTCEESGGGG-
T ss_pred hChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEE--EEEEcCCcCEechHHh-
Confidence 6899999999999999999999999999999999999999999999999998764 45543 3588999999999865
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ..++..+++|+++|+++.|++++|.+++.++
T Consensus 86 --~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 118 (149)
T 2pqq_A 86 --FD------PGPRTATGTALTEVKLLALGHGDLQPWLNVR 118 (149)
T ss_dssp --TS------CEECSSEEEESSCEEEEEEEGGGHHHHHHHC
T ss_pred --cC------CCCcceEEEEccceEEEEEeHHHHHHHHHhC
Confidence 22 1367889999999999999999999999999
No 23
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.70 E-value=5e-17 Score=145.39 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=93.9
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeE---eEEecCCcEEecc
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVF---KKYLSTGDFWGEE 419 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~---l~~L~~GdfFGE~ 419 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.++++..+ +|++. . +..+++||+|||.
T Consensus 10 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~~~~G~~fG~~ 87 (142)
T 3mdp_A 10 VYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSA--ANSTVCSVVPGAIFGVS 87 (142)
T ss_dssp GSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC-----------CEEEEECTTCEECGG
T ss_pred hCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCce--EeeeEEEecCCCEechH
Confidence 6899999999999999999999999999999999999999999999999998753 44432 3 4789999999998
Q ss_pred hhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 420 LATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 420 ~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
++ +. ..+++++++|+++|+++.|++++|.+++.++
T Consensus 88 ~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 122 (142)
T 3mdp_A 88 SL---IK------PYHYTSSARATKPVRVVDINGARLREMSENN 122 (142)
T ss_dssp GS---ST------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred HH---cC------CCCceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence 65 22 2367889999999999999999999999998
No 24
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.69 E-value=1.2e-16 Score=153.21 Aligned_cols=105 Identities=21% Similarity=0.397 Sum_probs=94.5
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|+++++++++.|+..+++..|+|||+|+++||++++||||.+|.|+++.. +|+. ..+++|++|||.++.
T Consensus 76 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~-~g~~-----~~l~~G~~fGe~~~~- 148 (202)
T 3bpz_A 76 SMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTK-GNKE-----MKLSDGSYFGEICLL- 148 (202)
T ss_dssp TCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECT-TSCC-----EEEETTCEECHHHHH-
T ss_pred cCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEEC-CCeE-----EEEcCCCEeccHHHh-
Confidence 789999999999999999999999999999999999999999999999999764 4443 468999999998652
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++|+|+++|+++.|++++|.+++.++
T Consensus 149 --~------~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 180 (202)
T 3bpz_A 149 --T------RGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180 (202)
T ss_dssp --H------CSBCSSEEEESSCEEEEEEEHHHHHHHHHHS
T ss_pred --c------CCCcccEEEEeeEEEEEEEEHHHHHHHHHHC
Confidence 1 1367899999999999999999999999999
No 25
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.68 E-value=1.6e-16 Score=153.47 Aligned_cols=106 Identities=17% Similarity=0.377 Sum_probs=95.6
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|+++++++++.++..++++.|+|||+|+++||++++||||.+|.|+++. +| . .+..+++||+|||.++
T Consensus 79 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-~----~~~~l~~G~~fGe~~~-- 150 (212)
T 3ukn_A 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-T----VLAILGKGDLIGSDSL-- 150 (212)
T ss_dssp GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-C----EEEEECTTCEEECSCC--
T ss_pred hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-CC-e----EEEEecCCCCcCcHHh--
Confidence 78999999999999999999999999999999999999999999999999986 33 3 3688999999999865
Q ss_pred cCCCCCCCCCC-CcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIP-HSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~-~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+ .+.+ +++++|+|+++|+++.|++++|.+++.++
T Consensus 151 -~-----~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 185 (212)
T 3ukn_A 151 -T-----KEQVIKTNANVKALTYCDLQYISLKGLREVLRLY 185 (212)
T ss_dssp -S-----SSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -c-----cCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHC
Confidence 1 1222 68899999999999999999999999999
No 26
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.66 E-value=7.3e-16 Score=142.00 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=98.3
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.|+..++.+.|++|++|+++||+++++|||.+|.++++...+|+.. .+..+++|++|||..+
T Consensus 42 ~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~--~~~~~~~G~~fGe~~~-- 117 (161)
T 3idb_B 42 DILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGNYDNRGSFGELAL-- 117 (161)
T ss_dssp TCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEE--EEEEEESCCEECGGGG--
T ss_pred CCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeE--EEEEcCCCCEechHHH--
Confidence 689999999999999999999999999999999999999999999999999885566654 3588999999999875
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ..+++++++|+++|+++.|++++|.+++.++
T Consensus 118 -~~------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~ 150 (161)
T 3idb_B 118 -MY------NTPRAATITATSPGALWGLDRVTFRRIIVKN 150 (161)
T ss_dssp -TC------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred -Hc------CCCcccEEEECCCeEEEEEeHHHHHHHHHHC
Confidence 22 2357899999999999999999999999999
No 27
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.66 E-value=7.1e-16 Score=147.29 Aligned_cols=106 Identities=19% Similarity=0.339 Sum_probs=96.1
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|+++++++++.++..+++..|+|||+|+++||+++++|||.+|.|+++..+ |+ .+..+++||+|||.++.
T Consensus 75 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-g~----~~~~l~~G~~fGe~~~~- 148 (198)
T 2ptm_A 75 SVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-GV----IATSLSDGSYFGEICLL- 148 (198)
T ss_dssp HCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-SC----EEEEECTTCEESCHHHH-
T ss_pred cCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-Ce----EEEEecCCCEechHHHc-
Confidence 7899999999999999999999999999999999999999999999999998744 44 25789999999998652
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++++|+++|+++.|++++|.+++.++
T Consensus 149 --~------~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~ 180 (198)
T 2ptm_A 149 --T------RERRVASVKCETYCTLFSLSVQHFNQVLDEF 180 (198)
T ss_dssp --H------SSCCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred --C------CCccceEEEEeeEEEEEEEeHHHHHHHHHHC
Confidence 1 1367899999999999999999999999999
No 28
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.65 E-value=3.2e-15 Score=142.11 Aligned_cols=109 Identities=14% Similarity=0.214 Sum_probs=98.0
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ +|++. .+..+++|++|||..+.
T Consensus 43 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~--~~~~~~~G~~fGe~~~l 120 (187)
T 3gyd_A 43 KIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQ--TIAKVGAGAIIGEMSMI 120 (187)
T ss_dssp TCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEE--EEEEEETTCEESHHHHH
T ss_pred cCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeE--EEEEccCCCeeeeHHHh
Confidence 7899999999999999999999999999999999999999999999999998864 56544 35889999999998752
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+ ..+++++++|+++|+++.|++++|.+++.++
T Consensus 121 ---~------~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~ 152 (187)
T 3gyd_A 121 ---D------GMPRSASCVASLPTDFAVLSRDALYQLLANM 152 (187)
T ss_dssp ---H------CCCCSSEEEEEEEEEEEEEEHHHHHHHHHHC
T ss_pred ---C------CCCeeEEEEECCCeEEEEEcHHHHHHHHHHC
Confidence 2 1257899999999999999999999999998
No 29
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.64 E-value=6.6e-16 Score=139.98 Aligned_cols=110 Identities=11% Similarity=0.217 Sum_probs=94.8
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++.+|||.+|.++++..+ +|++. .+..+++|++|||..+.
T Consensus 16 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~G~~~~~ 93 (154)
T 2z69_A 16 SHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEK--ILEVTNERNTFAEAMMF 93 (154)
T ss_dssp TSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------CCEEECTTEEESGGGGG
T ss_pred cChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEE--EEEEccCCCeeccHhhc
Confidence 6899999999999999999999999999999999999999999999999998753 45443 35789999999998652
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. +.+++..+++|+++|+++.|++++|.+++.++
T Consensus 94 ---~-----~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (154)
T 2z69_A 94 ---M-----DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDN 126 (154)
T ss_dssp ---S-----SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred ---c-----CCCCCceEEEEccceEEEEECHHHHHHHHHHC
Confidence 1 22337899999999999999999999999888
No 30
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.64 E-value=3.7e-17 Score=160.53 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=120.6
Q ss_pred CchHHHHHHHHHHHHhhccceeeeeeeecCCceeEEecccceeehheeccccceEEEe---ee--cCccccchHhhhhcc
Q 008346 50 GPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII---YS--SSTPHKHSRANAKKC 124 (569)
Q Consensus 50 s~~Wn~~~li~~i~~~~v~Plf~y~p~~~~~~~c~~~d~~~~~~~~~l~~~~D~~f~~---f~--~s~v~~D~~~Ia~~~ 124 (569)
++.||.++++..++++++.++..+.+ .+......+..+|.++|++|.+ .| ..+ -++
T Consensus 7 ~~~f~~~i~~lil~~~~~~~~~~~~~----------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------~~~-- 67 (223)
T 1orq_C 7 HPLVELGVSYAALLSVIVVVVECTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------DPA-- 67 (223)
T ss_dssp SHHHHTHHHHHHHHHHHHHHHHHHHH----------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-------CHH--
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcc----------cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-------cHH--
Confidence 34488888777777777554421110 1112233466778889998887 22 221 136
Q ss_pred ccchhcHhhhhhcCChhhhhhheeecccCCCCcccchhHHHHHHHHhhhhHHHHHHHHHHHHHhhhchhhHHhH-HHHHH
Q 008346 125 FYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKW-VKSAC 203 (569)
Q Consensus 125 ~Yl~sF~iDlla~lPl~~i~~~~~~~~~~~~~~~~~~~~Lrli~l~q~lpRL~Ri~~l~~~i~~~~g~~~~ta~-~~a~~ 203 (569)
+|+|++++|++|++|++.... +..+ .+. .+.+|++|+ .|++|+.|+.+...+....+.+... .+...
T Consensus 68 ~y~~~~iiDllailP~~~~~~----~~~~-~~~---~~~lr~lRl----lRllR~~r~~~~~~~~~~~l~~~~~~~~l~~ 135 (223)
T 1orq_C 68 GYVKKTLYEIPALVPAGLLAL----IEGH-LAG---LGLFRLVRL----LRFLRILLIISRGSKFLSAIADAADKIRFYH 135 (223)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH----HHHH-HHT---TTCHHHHHH----HHHHHHHHHHHSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH----Hhcc-hhH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999976542 1100 000 123343322 2444444443211111000111000 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhhccccccccccccccccCCccccccccCCCcccCCCccccchhHHhhhc
Q 008346 204 CILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQS 283 (569)
Q Consensus 204 ~L~~y~LasH~~gc~WYll~i~r~~~cw~~~c~~~~~C~~~~l~c~~~~~~~~W~~~~c~~~~~~~~~f~~gi~~~a~~~ 283 (569)
.+++.++..|+.+|.+|.+. + ++ +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e--~-------------------------~~-------------~---------------- 159 (223)
T 1orq_C 136 LFGAVMLTVLYGAFAIYIVE--Y-------------------------PD-------------P---------------- 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--S-------------------------SS-------------T----------------
T ss_pred HHHHHHHHHHHHHHHHHHHH--h-------------------------CC-------------c----------------
Confidence 22333456788888877642 0 00 0
Q ss_pred ccccchhhHhHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 284 GMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 284 ~~~~~~~~~~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
++....|..|+||++.||||+||||.+|.+..|++++++.|+.|++++|+.+|++
T Consensus 160 -----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i 214 (223)
T 1orq_C 160 -----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTV 214 (223)
T ss_dssp -----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012468899999999999999999999999999999999999999999999986
No 31
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.62 E-value=3.5e-15 Score=141.95 Aligned_cols=158 Identities=12% Similarity=0.087 Sum_probs=111.9
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEec
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 444 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt 444 (569)
+.|+||++|+++||+++.+|||.+|.++++..+ +|++. .+..+++||+||| .+ ++ ..++.++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~Ge-~~---~~------~~~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI--TLRHVLPGDYFGE-EA---LE------GKAYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECG-GG---GT------CSBCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEech-hh---hC------CCCceeEEEECC
Confidence 579999999999999999999999999998764 45543 3588999999999 76 22 126789999999
Q ss_pred eeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--------
Q 008346 445 NVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQ-------- 516 (569)
Q Consensus 445 ~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r~~-------- 516 (569)
+|+++.+++++|. .++ .......+....+...++.......++++|+.
T Consensus 70 ~~~v~~i~~~~~~---p~~---------------------~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~ 125 (195)
T 3b02_A 70 EAVVQGLEPRAMD---HEA---------------------LHRVARNLARQMRRVQAYEAHLQTGELRARIARYLLFLAD 125 (195)
T ss_dssp SEEEEEECGGGCC---HHH---------------------HHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEEcHHHcC---HHH---------------------HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999999999986 111 11111111122222233333333344444421
Q ss_pred -------hhhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 517 -------DQKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 517 -------~~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
++. .. +.++.++|..+++||. +.++++.|++.|.+...+=.|.
T Consensus 126 ~~~~~~~~~~-~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 177 (195)
T 3b02_A 126 TPLSARDRQG-IYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVY 177 (195)
T ss_dssp STTEEEETTE-EEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HcCCCCCCCe-eeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEE
Confidence 111 22 5789999999999999 9999999999999876653333
No 32
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.62 E-value=2.2e-15 Score=135.23 Aligned_cols=105 Identities=22% Similarity=0.376 Sum_probs=93.8
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.+++.. +|+ .+..+++|++|||..+.
T Consensus 27 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~----~~~~~~~G~~fGe~~~l- 99 (139)
T 3ocp_A 27 DNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV----KLCTMGPGKVFGELAIL- 99 (139)
T ss_dssp HCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE----EEEEECTTCEESCHHHH-
T ss_pred cCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE----EEEEeCCCCEeccHHHH-
Confidence 68999999999999999999999999999999999999999999999999854 344 35889999999998752
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++++|+++|+++.|++++|.+++.++
T Consensus 100 --~------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 131 (139)
T 3ocp_A 100 --Y------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRT 131 (139)
T ss_dssp --H------CCCCSSEEEESSCEEEEEEEHHHHHHHHTC-
T ss_pred --C------CCCcceEEEECcceEEEEEcHHHHHHHHhhC
Confidence 1 1367899999999999999999999999998
No 33
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.62 E-value=6.7e-15 Score=134.36 Aligned_cols=107 Identities=18% Similarity=0.338 Sum_probs=95.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++.. +. .+..+++||+|||..+
T Consensus 31 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~----~~~~~~~G~~fG~~~~-- 102 (160)
T 4f8a_A 31 EHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD--DE----VVAILGKGDVFGDVFW-- 102 (160)
T ss_dssp TCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET--TE----EEEEEETTCEEECCTT--
T ss_pred hCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC--CE----EEEEecCCCEeCcHHH--
Confidence 689999999999999999999999999999999999999999999999999772 23 3578999999999865
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ....+++++++|+++|+++.|++++|.+++.++
T Consensus 103 -~~----~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 137 (160)
T 4f8a_A 103 -KE----ATLAQSCANVRALTYCDLHVIKRDALQKVLEFY 137 (160)
T ss_dssp -TC----SSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -hc----CcccceEEEEEECCceEEEEEcHHHHHHHHHHH
Confidence 11 111367899999999999999999999999999
No 34
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.62 E-value=6.1e-15 Score=158.90 Aligned_cols=197 Identities=14% Similarity=0.127 Sum_probs=134.7
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.|+..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|+.....+..+++|++|||.++
T Consensus 46 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~l- 124 (469)
T 1o7f_A 46 GVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESIL- 124 (469)
T ss_dssp TCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGGG-
T ss_pred CCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhhh-
Confidence 6899999999999999999999999999999999999999999999999998853 44210014688999999999752
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHH--------HHHH
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKAC--------VIQA 494 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~--------~iq~ 494 (569)
. ..++++|++|+++|+++.|++++|..++.++ +.+....++.+. .+.+.+... ....
T Consensus 125 ---~------~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~--p~~~~~l~~~~~----~~l~~~~~~~~l~~~~~~~~~ 189 (469)
T 1o7f_A 125 ---D------NTPRHATIVTRESSELLRIEQEDFKALWEKY--RQYMAGLLAPPY----GVMETGSNNDRIPDKENVPSE 189 (469)
T ss_dssp ---G------TCBCSSEEEESSSEEEEEEEHHHHHHHHHHH--GGGTTTTSCTTT----SCSCC------------CCCS
T ss_pred ---C------CCCccceEEEccceeEEEEcHHHHHHHHHhC--HHHHHHHHHHHH----HHHHhccCcccCCCcCCCchH
Confidence 1 1367899999999999999999999999999 443332222221 122222220 0001
Q ss_pred HHHHHHHHHhhhhhhhhhh----hhhhhhhh-cCCCchhhhhHH-h-----hcHH-HHHHHHHHHHcCCcCCCc
Q 008346 495 AWCRYKKRKLEGSLYAKEN----ILQDQKAE-AGGKPSKFGTAI-Y-----ATQF-FTYVRRSVKRNGGLPGGR 556 (569)
Q Consensus 495 a~rr~~~r~~~~~~~~~e~----r~~~~~~~-~~~~~~~~~~~~-~-----~sr~-~~~~~~~~~~~~~~~~~~ 556 (569)
+.++..+|+...++..+.. +...+... .+.++.++|..+ + .||. +.++++.|+++|.+...+
T Consensus 190 ~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~~~t~SR~~~~~~l~~L~~~G~I~~~~ 263 (469)
T 1o7f_A 190 KILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVD 263 (469)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcCCCCCCHHHHHHHHHHHHhccceeecc
Confidence 1222233333332222221 11111111 145678888866 4 4888 888899999999886655
No 35
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.60 E-value=5.7e-15 Score=135.18 Aligned_cols=105 Identities=18% Similarity=0.300 Sum_probs=94.9
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.++++. +|+ .+..+++||+|||..+.
T Consensus 42 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~----~~~~~~~G~~fGe~~~~- 114 (154)
T 3pna_A 42 KNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE----WATSVGEGGSFGELALI- 114 (154)
T ss_dssp HCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTE----EEEEECTTCEECCHHHH-
T ss_pred hChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCE----EEEEecCCCEeeehHhh-
Confidence 68999999999999999999999999999999999999999999999999987 344 35789999999998762
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++.++++|+++|+++.|++++|.+++.++
T Consensus 115 --~------~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~ 146 (154)
T 3pna_A 115 --Y------GTPRAATVKAKTNVKLWGIDRDSYRRILMGS 146 (154)
T ss_dssp --H------CCCCSSEEEESSCEEEEEEEHHHHHHHTHHH
T ss_pred --c------CCCcceEEEECcceEEEEEeHHHHHHHHHhC
Confidence 1 1257899999999999999999999999998
No 36
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=5e-15 Score=132.07 Aligned_cols=103 Identities=24% Similarity=0.450 Sum_probs=92.8
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|+||++|+++||+++++|||.+|.++++..+ + ..+++||+|||..+.
T Consensus 15 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~------~~~~~G~~~G~~~~~- 85 (138)
T 1vp6_A 15 AVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALI- 85 (138)
T ss_dssp TCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C------EEECTTCEECHHHHH-
T ss_pred hChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c------ceECCCCEeeehHhc-
Confidence 6899999999999999999999999999999999999999999999999987654 2 358999999998652
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++..+++|+++|+++.|++++|.+++.++
T Consensus 86 --~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 117 (138)
T 1vp6_A 86 --S------GEPRSATVSAATTVSLLSLHSADFQMLCSSS 117 (138)
T ss_dssp --H------CCCCSSCEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred --c------CCCceeEEEECCCEEEEEECHHHHHHHHHHC
Confidence 1 1256789999999999999999999999998
No 37
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.57 E-value=1.2e-14 Score=138.70 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=110.4
Q ss_pred HHhcCccEEECCCCEEEecCCCc--CeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCC
Q 008346 359 MCKCLKPVLYVQECCIVKEGDPI--CEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPH 435 (569)
Q Consensus 359 L~~~lk~~~f~kGe~IireGd~~--~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~ 435 (569)
|...++.+.|+||++|+++||++ +++|||.+|.++++..+ +|++. .+..+++||+||| .+. + ..+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~-~~l---~------~~~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL--TLRLVRPGGFFGE-EAL---F------GQE 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE--EEEEECTTCEECT-HHH---H------TCC
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCCEeee-hhc---C------CCC
Confidence 35678899999999999999999 99999999999998763 55543 3588999999999 441 1 125
Q ss_pred cccEEEEeceeEEEEecHHHHHHHHHHhhhhhcccCCchhhhhhcccchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 008346 436 SNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL 515 (569)
Q Consensus 436 st~tV~Alt~~ell~L~~edl~~l~~~~~~~~~~s~~l~~t~r~ys~~~r~~~~~~iq~a~rr~~~r~~~~~~~~~e~r~ 515 (569)
+..+++|+++|+++.+ +++|+ .++ . ....+.++.+. +...++.......++++|+
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~---p~~--~-------~~~~~~l~~~l------------~~~~~~~~~~~~~~~~~Rl 123 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD---PEL--L-------KDLAQHLSQGL------------AEAYRRIERLATQRLKNRM 123 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC---HHH--H-------HHHHHHHHHHH------------HHHHHHHHHHHHCCHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC---HHH--H-------HHHHHHHHHHH------------HHHHHHHHHHhcCCHHHHH
Confidence 7789999999999999 88875 111 0 00111111111 1222222222233333332
Q ss_pred h--------------hhhhhc-CCCchhhhhHHhhcHH-HHHHHHHHHHcCCcCCCcccce
Q 008346 516 Q--------------DQKAEA-GGKPSKFGTAIYATQF-FTYVRRSVKRNGGLPGGRVNIT 560 (569)
Q Consensus 516 ~--------------~~~~~~-~~~~~~~~~~~~~sr~-~~~~~~~~~~~~~~~~~~~~~~ 560 (569)
. ++.... +.++.++|..+++||. +.+.++.|+++|.+..++=.|.
T Consensus 124 ~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~ 184 (202)
T 2zcw_A 124 AAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQ 184 (202)
T ss_dssp HHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 1 011122 5789999999999999 9999999999999876653333
No 38
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.56 E-value=2.5e-14 Score=147.19 Aligned_cols=107 Identities=12% Similarity=0.219 Sum_probs=96.6
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|+++++++++.|+..++.+.|+||++|+++||+++++|||.+|.++++..+ +|++ .+..+++|++|||.++.
T Consensus 17 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~---~~~~~~~G~~fGe~~l~ 93 (333)
T 4ava_A 17 GMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA---IIARALPGMIVGEIALL 93 (333)
T ss_dssp TSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE---EEEEECTTCEESHHHHH
T ss_pred CCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE---EEEEecCCCEeeHHHhc
Confidence 7899999999999999999999999999999999999999999999999998864 5554 35889999999998762
Q ss_pred hcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++|+|+++|+++.|++++|.+++ ++
T Consensus 94 ---~------~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~ 124 (333)
T 4ava_A 94 ---R------DSPRSATVTTIEPLTGWTGGRGAFATMV-HI 124 (333)
T ss_dssp ---H------TCBCSSEEEESSCEEEEEECHHHHHHHH-HS
T ss_pred ---C------CCCceEEEEEecCEEEEEEcHHHHHHHH-hC
Confidence 1 1368899999999999999999999999 78
No 39
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.53 E-value=8.9e-15 Score=130.59 Aligned_cols=105 Identities=20% Similarity=0.326 Sum_probs=92.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEEC-CCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYV-QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~-kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|+.++++.++.++..++.+.|+ +|++|+++||+++.+|||.+|.++++..+| +. ..+++|++|||..+
T Consensus 20 ~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g-~~-----~~l~~G~~fG~~~~- 92 (134)
T 2d93_A 20 QLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDG-KV-----ENLFMGNSFGITPT- 92 (134)
T ss_dssp HSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSS-CE-----EEECTTCEESCCSS-
T ss_pred CCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCC-cE-----EEecCCCccChhHh-
Confidence 67999999999999999999999999 999999999999999999999999986444 42 45899999999865
Q ss_pred hcCCCCCCCCCCCcccEE-EEeceeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCAL-ISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV-~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ..++..++ +|+++|+++.|++++|.+++.++
T Consensus 93 --~~------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (134)
T 2d93_A 93 --LD------KQYMHGIVRTKVDDCQFVCIAQQDYWRILNHV 126 (134)
T ss_dssp --SC------CEECCSEEEESSSSEEEEEEEHHHHHHHSSCC
T ss_pred --cC------CCcceeEEEEEecceEEEEEeHHHHHHHHHHH
Confidence 22 13566788 99999999999999999998876
No 40
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=4.5e-14 Score=142.96 Aligned_cols=109 Identities=23% Similarity=0.420 Sum_probs=97.9
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec--CCeeeeeEeEEecCCcEEecchh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTGDFWGEELA 421 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d--gg~~~~~~l~~L~~GdfFGE~~L 421 (569)
++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.++++..+ +|+.. .+..+++||+|||.++
T Consensus 161 ~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~--~~~~l~~G~~fGe~~l 238 (299)
T 3shr_A 161 SVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPV--FLRTLGKGDWFGEKAL 238 (299)
T ss_dssp TSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCE--EEEEEETTCEECGGGG
T ss_pred hCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcce--EEEEcCCCCEeChHHH
Confidence 7899999999999999999999999999999999999999999999999998864 45433 3588999999999976
Q ss_pred hhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 422 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 422 ~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ..++++||+|.++|+++.|++++|.+++.++
T Consensus 239 ---l~------~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~ 271 (299)
T 3shr_A 239 ---QG------EDVRTANVIAAEAVTCLVIDRDSFKHLIGGL 271 (299)
T ss_dssp ---SS------SEECSSEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred ---hC------CCCcceEEEECCCEEEEEEeHHHHHHHHccH
Confidence 22 2367899999999999999999999999998
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.50 E-value=1.1e-13 Score=140.08 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=95.1
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.|+..++.+.|+||++|++|||+++.+|||++|.|+++. + |+ .+..+++|++|||.++.
T Consensus 43 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~-g~----~~~~~~~G~~fGe~~ll- 115 (299)
T 3shr_A 43 DNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E-GV----KLCTMGPGKVFGELAIL- 115 (299)
T ss_dssp TCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-T-TE----EEEEECTTCEESCSGGG-
T ss_pred hCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-C-CE----EEEEeCCCCeeeHhHHh-
Confidence 78999999999999999999999999999999999999999999999999854 3 34 35789999999999762
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++++||+|+++|+++.|++++|+.++.++
T Consensus 116 --~------~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~ 147 (299)
T 3shr_A 116 --Y------NCTRTATVKTLVNVKLWAIDRQCFQTIMMRT 147 (299)
T ss_dssp --T------TTBCCSEEEESSCEEEEEECHHHHHHHHHHH
T ss_pred --c------CCCCCcEEEEcCCeEEEEEcHHHHHHHhhHh
Confidence 1 2368899999999999999999999999988
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=1.8e-13 Score=137.65 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=96.7
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec--CCeeeeeEeEEecCCcEEecchh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTGDFWGEELA 421 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d--gg~~~~~~l~~L~~GdfFGE~~L 421 (569)
++++|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.++++..+ |++.. .+..+++||+|||.++
T Consensus 161 ~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~--~~~~l~~G~~fGe~~l 238 (291)
T 2qcs_B 161 KVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFV--EVGRLGPSDYFGEIAL 238 (291)
T ss_dssp TCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEE--EEEEECTTCEECSGGG
T ss_pred hchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccE--EEEEeCCCCEecHHHH
Confidence 7899999999999999999999999999999999999999999999999998753 43322 3688999999999876
Q ss_pred hhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 422 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 422 ~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. + .++++|++|.++|+++.|++++|.+++.++
T Consensus 239 ---l~-----~-~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~ 271 (291)
T 2qcs_B 239 ---LM-----N-RPKAATVVARGPLKCVKLDRPRFERVLGPC 271 (291)
T ss_dssp ---TC-----C-CCCSSEEEEEEEEEEEEEEHHHHHHHHCCH
T ss_pred ---cC-----C-CCcceEEEECCcEEEEEEcHHHHHHHhccH
Confidence 22 1 358899999999999999999999999988
No 43
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.6e-14 Score=135.73 Aligned_cols=106 Identities=13% Similarity=0.270 Sum_probs=96.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.++++..+++ .+..+++||+|||.++.
T Consensus 129 ~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~-----~~~~l~~g~~fGe~~~~- 202 (246)
T 3of1_A 129 SMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG-----VINKLKDHDYFGEVALL- 202 (246)
T ss_dssp HCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE-----EEEEEETTCEECHHHHH-
T ss_pred hChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc-----eEEEcCCCCcccHHHHh-
Confidence 789999999999999999999999999999999999999999999999999886544 25789999999999762
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++|+|+++|+++.|++++|.+++..+
T Consensus 203 --~------~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~ 234 (246)
T 3of1_A 203 --N------DLPRQATVTATKRTKVATLGKSGFQRLLGPA 234 (246)
T ss_dssp --H------TCBCSSEEEESSCEEEEEEEHHHHHHHCTTH
T ss_pred --C------CCCcccEEEECCCEEEEEEeHHHHHHHhccH
Confidence 1 2368899999999999999999999999888
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.49 E-value=1.8e-13 Score=146.66 Aligned_cols=109 Identities=12% Similarity=0.179 Sum_probs=98.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.+..|+..++.+.|++|++|+++||+++.+|||++|.|+++...+|+.. .+..+++|++|||.++.
T Consensus 149 ~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~--~v~~l~~G~~fGe~all- 225 (416)
T 3tnp_B 149 DILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGNYDNRGSFGELALM- 225 (416)
T ss_dssp TSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEE--EEEEEESCCEECGGGGT-
T ss_pred CCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEE--EEEEecCCCEEeeHHHh-
Confidence 789999999999999999999999999999999999999999999999999886555543 35889999999999762
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++++||+|+++|+++.|++++|..++.++
T Consensus 226 --~------~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~ 257 (416)
T 3tnp_B 226 --Y------NTPKAATITATSPGALWGLDRVTFRRIIVKN 257 (416)
T ss_dssp --S------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred --c------CCCcccEEEEccCeEEEEEeehhhhhhhhcc
Confidence 2 2368899999999999999999999999988
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.5e-14 Score=136.17 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=94.2
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||.+|.++++. +| +. +..+++|++|||.++.
T Consensus 11 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~-~~----~~~~~~g~~fGe~~l~- 83 (246)
T 3of1_A 11 NNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-ND-NK----VNSSGPGSSFGELALM- 83 (246)
T ss_dssp TCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-TT-SC----CEEECTTCEECHHHHH-
T ss_pred cCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CC-EE----EEecCCCCeeehhHHh-
Confidence 68999999999999999999999999999999999999999999999999876 33 32 4779999999998763
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++++|++|.++|+++.|++++|..++.++
T Consensus 84 --~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~ 115 (246)
T 3of1_A 84 --Y------NSPRAATVVATSDCLLWALDRLTFRKILLGS 115 (246)
T ss_dssp --H------TCCCSSEEEESSCEEEEEEEHHHHHHTTTTT
T ss_pred --c------CCCCCcEEEECCCeEEEEEEhHHHHHHHHHh
Confidence 1 1367899999999999999999999999887
No 46
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.48 E-value=1.5e-13 Score=138.19 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=94.9
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.++.++..++.+.|++|++|+++||+++++|||++|.++++. +| + .+..+++||+|||.++
T Consensus 43 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~----~~~~l~~G~~fGe~~l-- 114 (291)
T 2qcs_B 43 KNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-E----WATSVGEGGSFGELAL-- 114 (291)
T ss_dssp TCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-E----EEEEECTTCEECGGGG--
T ss_pred cChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-e----EEEEcCCCCccchHHH--
Confidence 67999999999999999999999999999999999999999999999999987 43 4 3578999999999865
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. ..++++|++|.++|+++.|++++|..++.++
T Consensus 115 -~~------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~ 147 (291)
T 2qcs_B 115 -IY------GTPRAATVKAKTNVKLWGIDRDSYRRILMGS 147 (291)
T ss_dssp -TC------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHH
T ss_pred -hc------CCCCceEEEECCCEEEEEEEhHHHHHHHhhh
Confidence 22 2367899999999999999999999999888
No 47
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.43 E-value=3.9e-13 Score=144.02 Aligned_cols=109 Identities=13% Similarity=0.220 Sum_probs=95.6
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecC-------CeeeeeEeEEecCCcEE
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG-------GRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dg-------g~~~~~~l~~L~~GdfF 416 (569)
++|+|+.++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.++++..+. |+.. .+..+++|++|
T Consensus 271 ~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~--~l~~l~~G~~f 348 (416)
T 3tnp_B 271 SLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAV--EIARCFRGQYF 348 (416)
T ss_dssp GCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------C--EEEEECTTCEE
T ss_pred hchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCcee--EEEEeCCCCEe
Confidence 78999999999999999999999999999999999999999999999999987542 4433 35889999999
Q ss_pred ecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 417 GEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 417 GE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
||.++ +. ..++++||+|+++|+++.|++++|.+++.++
T Consensus 349 GE~al---l~------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~ 386 (416)
T 3tnp_B 349 GELAL---VT------NKPRAASAHAIGTVKCLAMDVQAFERLLGPC 386 (416)
T ss_dssp SGGGG---TC------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCH
T ss_pred cHHHH---hC------CCCceeEEEEcCCeEEEEEEHHHHHHHhcch
Confidence 99976 22 2368899999999999999999999999988
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.40 E-value=3.1e-13 Score=142.93 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=97.1
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec--CCeeeeeEeEEecCCcEEecchh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN--GGRNTSVFKKYLSTGDFWGEELA 421 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d--gg~~~~~~l~~L~~GdfFGE~~L 421 (569)
++|+|.+++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.++++..+ |++.. .+..+++||+|||.++
T Consensus 252 ~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~--~v~~l~~Gd~fGe~al 329 (381)
T 4din_B 252 KVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYV--EVGRLGPSDYFGEIAL 329 (381)
T ss_dssp HCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCC--EEEEECTTCEECTTGG
T ss_pred hhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceE--EEEEeCCCCEechHHH
Confidence 7899999999999999999999999999999999999999999999999998863 33322 3588999999999976
Q ss_pred hhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 422 TSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 422 ~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. . ..++++||+|+++|+++.|++++|.+++..+
T Consensus 330 l---~------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~ 362 (381)
T 4din_B 330 L---L------NRPRAATVVARGPLKCVKLDRPRFERVLGPC 362 (381)
T ss_dssp G---S------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCH
T ss_pred h---C------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhh
Confidence 2 2 2368899999999999999999999999988
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.39 E-value=6.9e-13 Score=140.27 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=95.3
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATS 423 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~w 423 (569)
++|+|++++++.+..|+..++.+.|++|++|+++||+++.+|||.+|.|+++. +|+ .+..+++|++|||.++.
T Consensus 134 ~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~----~v~~l~~G~~fGe~all- 206 (381)
T 4din_B 134 KNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGE----WVTNISEGGSFGELALI- 206 (381)
T ss_dssp TCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTE----EEEEEESSCCBCGGGGT-
T ss_pred CChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCe----EeeeCCCCCEEEchHHh-
Confidence 78999999999999999999999999999999999999999999999999986 344 35789999999999762
Q ss_pred cCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 424 ALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 424 ald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
. ..++++||+|+++|+++.|++++|..++.++
T Consensus 207 --~------~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~ 238 (381)
T 4din_B 207 --Y------GTPRAATVKAKTDLKLWGIDRDSYRRILMGS 238 (381)
T ss_dssp --S------CCBCSSEEEESSSCEEEEEEHHHHHHHHHHH
T ss_pred --c------CCCcceEEEECCCEEEEEEchHHHHHhhhhh
Confidence 2 2368899999999999999999999999988
No 50
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.36 E-value=3.7e-12 Score=137.11 Aligned_cols=106 Identities=11% Similarity=0.186 Sum_probs=94.2
Q ss_pred ccccccCCCHHHHHHHHhcCcc-EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKP-VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~-~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++. +.|++|++|++|||+++.+|||.+|.++++..+. . .+..+++||+|||.++
T Consensus 341 ~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~-~----~~~~l~~G~~fGe~~l- 414 (469)
T 1o7f_A 341 HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGK-G----VVCTLHEGDDFGKLAL- 414 (469)
T ss_dssp TCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTT-E----EEEEEETTCEECGGGG-
T ss_pred cCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCC-e----eEEEecCCCEEEEehh-
Confidence 7899999999999999999985 5999999999999999999999999999987433 2 3588999999999876
Q ss_pred hcCCCCCCCCCCCcccEEEEec-eeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt-~~ell~L~~edl~~l~~~~ 463 (569)
+. ..++++||+|++ +|+++.|++++|.+++.++
T Consensus 415 --l~------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~ 448 (469)
T 1o7f_A 415 --VN------DAPRAASIVLREDNCHFLRVDKEDFNRILRDV 448 (469)
T ss_dssp --TC------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHT
T ss_pred --hc------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHC
Confidence 22 236889999999 7999999999999999999
No 51
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.31 E-value=8.4e-12 Score=147.31 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=94.4
Q ss_pred ccccccCCCHHHHHHHHhcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec---CCeeeeeEeEEecCCcEEecch
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN---GGRNTSVFKKYLSTGDFWGEEL 420 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d---gg~~~~~~l~~L~~GdfFGE~~ 420 (569)
++++|+++++..+.+||.+++...|++|++|+++||+++.+|+|++|+|+++..+ ++... .+..+++|+.||| +
T Consensus 46 ~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~--~v~~l~~G~sFGE-a 122 (999)
T 4f7z_A 46 GVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAV--TICTLGIGTAFGE-S 122 (999)
T ss_dssp TCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCE--EEEEEETTCEECG-G
T ss_pred CCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCce--eEEEecCCcchhh-h
Confidence 5789999999999999999999999999999999999999999999999998742 11111 3588999999999 4
Q ss_pred hhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHHHHHHh
Q 008346 421 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 421 L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~l~~~~ 463 (569)
+. . + .+|++||+|.++|+++.|++++|+.+..+|
T Consensus 123 ll---~-----n-~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~ 156 (999)
T 4f7z_A 123 IL---D-----N-TPRHATIVTRESSELLRIEQEDFKALWEKY 156 (999)
T ss_dssp GG---G-----T-CCCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred hc---c-----C-CCcceEEEeccceEEEEEEHHHHHHHHHhC
Confidence 41 1 2 268999999999999999999999999998
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.25 E-value=2.6e-11 Score=143.18 Aligned_cols=106 Identities=11% Similarity=0.174 Sum_probs=93.1
Q ss_pred ccccccCCCHHHHHHHHhcCccEEE-CCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLKPVLY-VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk~~~f-~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++...++.++..+....+ ++|++|++|||.++.+|||++|.|+++...++. +..+++||+|||.++
T Consensus 341 ~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd~FGElAL- 414 (999)
T 4f7z_A 341 HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGDDFGKLAL- 414 (999)
T ss_dssp TCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTCEECGGGG-
T ss_pred hhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCCcccchhh-
Confidence 7899999999999999999997654 679999999999999999999999998743333 578999999999987
Q ss_pred hcCCCCCCCCCCCcccEEEEece-eEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVTN-VEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt~-~ell~L~~edl~~l~~~~ 463 (569)
+. ..|+.+||+|.++ |+++.++++||.+++.+-
T Consensus 415 --L~------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 415 --VN------DAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp --TC------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred --cc------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 22 2478999999985 999999999999999886
No 53
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.19 E-value=4.8e-11 Score=135.79 Aligned_cols=106 Identities=12% Similarity=0.210 Sum_probs=94.2
Q ss_pred ccccccCCCHHHHHHHHhcCc-cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhh
Q 008346 344 TVPMFQMMGKSILSEMCKCLK-PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELAT 422 (569)
Q Consensus 344 kVplF~~ld~~~L~~L~~~lk-~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~ 422 (569)
++|+|++++++.++.++..++ .+.|+||++|+++||+++.+|||++|.|+++.. |.. .+..+++||+|||.++.
T Consensus 36 ~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~-g~~----il~~l~~Gd~fGe~al~ 110 (694)
T 3cf6_E 36 HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY-GKG----VVCTLHEGDDFGKLALV 110 (694)
T ss_dssp TCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-TTE----EEEEEETTCEECHHHHH
T ss_pred cChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-CCE----EEEEeCCCCEeehHHHh
Confidence 789999999999999999998 789999999999999999999999999999875 322 35889999999998652
Q ss_pred hcCCCCCCCCCCCcccEEEEec-eeEEEEecHHHHHHHHHHh
Q 008346 423 SALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAIVYQY 463 (569)
Q Consensus 423 wald~~s~~~~~~st~tV~Alt-~~ell~L~~edl~~l~~~~ 463 (569)
. ..+++++++|++ +|+++.|++++|.+++.++
T Consensus 111 ---~------~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~ 143 (694)
T 3cf6_E 111 ---N------DAPRAASIVLREDNCHFLRVDKEDFNRILRDV 143 (694)
T ss_dssp ---H------TCBCSSEEEECSSSEEEEEEEHHHHHHHTTTT
T ss_pred ---C------CCCceEEEEEeeCceEEEEEeHHHHHHHHHHC
Confidence 1 125789999999 5999999999999999988
No 54
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.17 E-value=2.3e-11 Score=133.87 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|..|+||++.||||+||||+.|.+..+++|++++|++|++++++.||.+
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI 424 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVI 424 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999999999999999999998877
No 55
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.14 E-value=6.7e-11 Score=110.27 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=48.8
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|..|+||++.|+||+||||++|.+..+++++++.|++|++++|+.+|++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i 133 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAV 133 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999999999999999998
No 56
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.05 E-value=3.5e-10 Score=101.20 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|..|+||++.|+||+||||.+|.+..+++++++.|++|+.++|+.+|++
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i 110 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL 110 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999999999999999999999999987
No 57
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=98.83 E-value=2e-09 Score=98.15 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
|..|+||++.|+|||||||++|.+..|++++++.|++|++++|+++|++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i 92 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTI 92 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999988
No 58
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=98.73 E-value=6.4e-08 Score=89.15 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
|.-|+||++.|+||+||||++|.+..+++|+++.+++|+.++++.+|++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~ 101 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKL 101 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668999999999999999999999999999999999999999999988
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=98.64 E-value=2.1e-07 Score=82.14 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|..|+||++.|+||+||||.+|.+..+++++++.+++|+.++++.+|++
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l 98 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKL 98 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999987
No 60
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=98.57 E-value=3e-08 Score=90.34 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|..|+||++.|+||+||||++|.+..+++|+++.+++|++++|+++|++
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i 89 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL 89 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999998
No 61
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.56 E-value=4.9e-08 Score=81.10 Aligned_cols=50 Identities=10% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|.-|+||+..|+||+||||..|.+..+++++++.+++|+.++++.+|++
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i 77 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERL 77 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999875
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=98.55 E-value=1.1e-08 Score=88.67 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++++|++
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i 89 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAAL 89 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57779999999999999999999999999999999999999999999987
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=98.51 E-value=7.5e-08 Score=82.55 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
|.-|+||+..|+||+||||+.|.+..+++|+++.+++|+.++++++|++
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i 81 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKL 81 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999988
No 64
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.40 E-value=4e-08 Score=92.29 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 293 KKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 293 ~kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
..|.-|+||++.|+||+||||++|.+..+.+|+++.+++|++++|+++|++
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i 116 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL 116 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356779999999999999999999999999999999999999999999999
No 65
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.35 E-value=6.2e-07 Score=92.07 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|..++||++.|+||+||||++|.+...++++++.+++|++++|+++|.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v 131 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLI 131 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999977
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.11 E-value=1.6e-06 Score=90.22 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|..++||++.|+||+||||++|.+...++++++.+++|++++|+++|.+
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i 145 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLV 145 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999998
No 67
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.10 E-value=1.8e-06 Score=89.37 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|..++||++.|+||+||||+.|.+...++++++.|++|++++|+++|.+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i 127 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCA 127 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999988
No 68
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.03 E-value=1.5e-05 Score=83.00 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhhccccCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhcCcccccccCCCHHHHHHHHhcCccEEECCC
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNLTVPMFQMMGKSILSEMCKCLKPVLYVQE 371 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~--~~~E~~faI~~mi~G~~lfA~lIGN~kVplF~~ld~~~L~~L~~~lk~~~f~kG 371 (569)
.+..++||++.|+||+|||+..|+ +..-++++.+.+++|+++.|+++|-+-..+ +. -..+.+...|.+.
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~----sr-----p~~ra~ti~FS~~ 161 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKI----SQ-----PKKRAETLVFSTH 161 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HC-----GGGGGGGEEECSC
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hH-----HhhcCceEEecce
Confidence 355699999999999999999886 566778899999999999999999771110 00 0123344677777
Q ss_pred CEEEecC
Q 008346 372 CCIVKEG 378 (569)
Q Consensus 372 e~IireG 378 (569)
-+|...+
T Consensus 162 AVI~~~d 168 (340)
T 3sya_A 162 AVISMRD 168 (340)
T ss_dssp EEEEEET
T ss_pred EEEeccC
Confidence 6666544
No 69
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.00 E-value=3.8e-06 Score=86.36 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|.-|+||++.|+|||||||++|.+...++|+++.+++|+.+++++++++
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i 164 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV 164 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999988
No 70
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=81.03 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|.-|+||++.|+||+||||++|.++..++|+++.+++|+.+++++++++
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~ 142 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAV 142 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999887
No 71
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.73 E-value=6.3e-05 Score=78.28 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhccccCCCCCCCC--cchhhHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTST--HEGENLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~--~~~E~~faI~~mi~G~~lfA~lIGN~ 343 (569)
.+..++||++.|+||+|||+..++ +..-.+++.+.+++|+++.|+++|-+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv 145 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAI 145 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999999998653 67788899999999999999999866
No 72
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.72 E-value=7.8e-05 Score=75.22 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHhhhccccCCC-CCC-CCcchh----hHHHHHHHHHHHHHHHHHhcCc
Q 008346 292 KKKFIYCFRWGLQTVSCAGQN-LQT-STHEGE----NLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 292 ~~kY~~slyW~l~tLtTvG~g-~~~-s~~~~E----~~faI~~mi~G~~lfA~lIGN~ 343 (569)
+.-+..|+||.++++||.|+| |+. +.+..- ..|++++++.|.++.++.+|-+
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii 235 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAIC 235 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445677999999999999999 873 433222 7888999999999999988877
No 73
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=97.63 E-value=3.4e-05 Score=85.28 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGN 342 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN 342 (569)
|+-|+||++.|+||+||||++|.+..+++|+++.+++|++++++.+|.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999987
No 74
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.61 E-value=4.7e-06 Score=86.03 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhccccCCCCCCCCcchhhHHHHHHHHHHHHHHHHHhcCccccc
Q 008346 295 FIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTVPM 347 (569)
Q Consensus 295 Y~~slyW~l~tLtTvG~g~~~s~~~~E~~faI~~mi~G~~lfA~lIGN~kVpl 347 (569)
|.-|+||++.|+||+||||..|.+..+++|+++.+++|++++++++|++--.+
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999884333
No 75
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=97.59 E-value=3.5e-05 Score=79.13 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchhh------HHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGEN------LLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E~------~faI~~mi~G~~lfA~lIGN~ 343 (569)
.|+-|+||++.|||||||||..|.+...+ +|+++.+++|+.++|+++|.+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i 279 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTI 279 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999988877776 599999999999999999876
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=97.53 E-value=6.2e-05 Score=76.27 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCcchh-------hHHHHHHHHHHHHHHHHHhcCc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQTSTHEGE-------NLLASFIIIASLLLLLLVLGNL 343 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~s~~~~E-------~~faI~~mi~G~~lfA~lIGN~ 343 (569)
-|+-|+||++.|+||+||||..|.+... ++|+++.+++|+.++|++++.+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i 257 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETF 257 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999998887643 8999999999999999999887
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=92.48 E-value=0.42 Score=46.02 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhccccCCCCCC-----CCcchhhHHHHHHHHHHHHHHHHHhc
Q 008346 294 KFIYCFRWGLQTVSCAGQNLQT-----STHEGENLLASFIIIASLLLLLLVLG 341 (569)
Q Consensus 294 kY~~slyW~l~tLtTvG~g~~~-----s~~~~E~~faI~~mi~G~~lfA~lIG 341 (569)
-+..|+||.++++|+-|+++.- .+..+=..|..++++.+.++..+.||
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfia 217 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIA 217 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999988751 11112233444455555555555444
No 78
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=88.04 E-value=0.42 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHh
Q 008346 483 EWRTSKACVIQAAWCRYKKRKL 504 (569)
Q Consensus 483 ~~r~~~~~~iq~a~rr~~~r~~ 504 (569)
+-++|++..||.|||+|.-|..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999987654
No 79
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=87.32 E-value=0.45 Score=30.85 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=18.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 008346 483 EWRTSKACVIQAAWCRYKKRK 503 (569)
Q Consensus 483 ~~r~~~~~~iq~a~rr~~~r~ 503 (569)
+-+++++..||.|||+|..+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999998764
No 80
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=78.17 E-value=1.1 Score=40.70 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.4
Q ss_pred ccchhcHhhhhhcCChhh
Q 008346 125 FYLNSFLKDLLSCLPIPQ 142 (569)
Q Consensus 125 ~Yl~sF~iDlla~lPl~~ 142 (569)
+|+++=++|++|.+|+-.
T Consensus 81 ~f~~~~iiDllailP~~~ 98 (147)
T 2kyh_A 81 GYVKKTLYEIPALVPAGL 98 (147)
T ss_dssp HHHHHSTTTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887789999999753
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=76.40 E-value=16 Score=30.64 Aligned_cols=66 Identities=11% Similarity=0.063 Sum_probs=45.9
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEe
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 443 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Al 443 (569)
....++||+.+-..-.+.+++++|++|++++.. + ++. ..+++||.+=-. + .....+++.
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~-~~~-----~~l~~Gd~i~ip-------~-------~~~H~~~~~ 97 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-D-GAQ-----RRLHQGDLLYLG-------A-------GAAHDVNAI 97 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-T-TEE-----EEECTTEEEEEC-------T-------TCCEEEEES
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEEE-C-CEE-----EEECCCCEEEEC-------C-------CCcEEEEeC
Confidence 446688898887777778899999999999765 3 332 568999975422 1 122456777
Q ss_pred ceeEEEE
Q 008346 444 TNVEAFA 450 (569)
Q Consensus 444 t~~ell~ 450 (569)
++++++.
T Consensus 98 ~~~~~~~ 104 (114)
T 3fjs_A 98 TNTSLLV 104 (114)
T ss_dssp SSEEEEE
T ss_pred CCcEEEE
Confidence 7776554
No 82
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=72.72 E-value=8.7 Score=33.05 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=32.7
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||..+-.. ...+++++|++|++++.. +|+. ..+++||.+-
T Consensus 45 ~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~~-----~~l~~GD~v~ 88 (119)
T 3lwc_A 45 GRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGET-----VTAGPGEIVY 88 (119)
T ss_dssp EEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCEE-----EEECCCCEEE
Confidence 457788765443 388999999999999865 3443 5699999764
No 83
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=72.55 E-value=7.3 Score=32.64 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=34.5
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.-...++||+.-.. .+.+++++|++|++++.. ++|+. ..+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i-~~g~~-----~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT-EDGKK-----YVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE-TTCCE-----EEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE-CCCCE-----EEECCCCEEE
Confidence 34567788887655 457899999999999865 32442 5699999764
No 84
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=71.78 E-value=16 Score=34.77 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=51.5
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEE
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 442 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~A 442 (569)
+....+.||+.+=..-.+.+++++|++|++++.. + |++ ..+++||++==. + .....++|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-~-~~~-----~~l~~Gd~~~~p-------~-------~~~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-E-NNK-----KTISNGDFLEIT-------A-------NHNYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-S-SCE-----EEEETTEEEEEC-------S-------SCCEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEEEC-------C-------CCCEEEEE
Confidence 3456789999998888899999999999999865 3 332 568999975321 1 22357889
Q ss_pred eceeEEEEe
Q 008346 443 VTNVEAFAI 451 (569)
Q Consensus 443 lt~~ell~L 451 (569)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 85
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=69.85 E-value=25 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=31.5
Q ss_pred EECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 367 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 367 ~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+.+|..+-....+.+++++|++|++++.. +++. ..+++||.+=
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~~-----~~l~~Gd~i~ 87 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQK-----IDLVPEDVLM 87 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTEE-----EEECTTCEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCEE-----EEecCCCEEE
Confidence 356776655455678899999999999755 3342 5689999753
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=68.27 E-value=37 Score=27.77 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=43.4
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEe
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 443 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Al 443 (569)
....+.||..+-.--.+..++++|++|.+++.. +| +. ..+++||++=-. + .....+++.
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~~-~~-----~~l~~Gd~~~ip-------~-------~~~H~~~~~ 101 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-DQ-ET-----YRVAEGQTIVMP-------A-------GIPHALYAV 101 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-TT-EE-----EEEETTCEEEEC-------T-------TSCEEEEES
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-CC-EE-----EEECCCCEEEEC-------C-------CCCEEEEEC
Confidence 345677888765444457899999999999764 33 32 468999976422 1 122345666
Q ss_pred ceeEEEEe
Q 008346 444 TNVEAFAI 451 (569)
Q Consensus 444 t~~ell~L 451 (569)
++++++.+
T Consensus 102 ~~~~~~~v 109 (115)
T 1yhf_A 102 EAFQMLLV 109 (115)
T ss_dssp SCEEEEEE
T ss_pred CCceEEEE
Confidence 67776654
No 87
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=67.45 E-value=4.5 Score=35.30 Aligned_cols=45 Identities=13% Similarity=0.070 Sum_probs=32.0
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+||..-.+..+ .+++++|++|++++... +|+. ..+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~~-----~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGTV-----HAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCCE-----EEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCeE-----EEECCCCEEE
Confidence 34667776655443 48999999999998653 4442 5699999865
No 88
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=65.59 E-value=7.4 Score=33.84 Aligned_cols=45 Identities=11% Similarity=0.134 Sum_probs=32.8
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
-..+||..-+... ..+|++.|++|++++...+ |+. ..+++||.+-
T Consensus 47 We~tPG~~~~~~~-~~~E~~~iLeG~~~lt~dd-G~~-----~~l~aGD~~~ 91 (116)
T 3es4_A 47 WMAEPGIYNYAGR-DLEETFVVVEGEALYSQAD-ADP-----VKIGPGSIVS 91 (116)
T ss_dssp EEECSEEEEECCC-SEEEEEEEEECCEEEEETT-CCC-----EEECTTEEEE
T ss_pred EecCCceeECeeC-CCcEEEEEEEeEEEEEeCC-CeE-----EEECCCCEEE
Confidence 3567777766653 3469999999999986544 442 5689999875
No 89
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=65.18 E-value=42 Score=27.50 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=43.3
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEe
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 443 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Al 443 (569)
....+.||..+-.--.+..++++|++|.+++.. +++. ..+++||.+=-. + .....+++.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~~-----~~l~~Gd~~~ip-------~-------~~~H~~~~~ 95 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGVI-----KVLTAGDSFFVP-------P-------HVDHGAVCP 95 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTEE-----EEECTTCEEEEC-------T-------TCCEEEEES
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCEE-----EEeCCCCEEEEC-------c-------CCceeeEeC
Confidence 445678887654334457899999999999765 3342 568999975322 1 112345666
Q ss_pred ceeEEEEe
Q 008346 444 TNVEAFAI 451 (569)
Q Consensus 444 t~~ell~L 451 (569)
++++++.+
T Consensus 96 ~~~~~l~v 103 (116)
T 2pfw_A 96 TGGILIDT 103 (116)
T ss_dssp SCEEEEEE
T ss_pred CCcEEEEE
Confidence 67777666
No 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=62.70 E-value=12 Score=31.59 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=32.6
Q ss_pred ccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
....+.||..+-..-.+ ..++++|++|++++... +|+. ..+++||++=
T Consensus 42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~~-----~~l~~Gd~~~ 90 (125)
T 3h8u_A 42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGIV-----THLKAGDIAI 90 (125)
T ss_dssp EEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTCE-----EEEETTEEEE
T ss_pred EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCeE-----EEeCCCCEEE
Confidence 34567788776544455 37899999999997542 3442 5689999764
No 91
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=62.62 E-value=7.8 Score=36.14 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHHHHHHhcCcc----EEECCCCEEEec-C----------CCcCeEEEEEeeEEEEEEecCC----eeeeeEeEEecCCc
Q 008346 354 SILSEMCKCLKP----VLYVQECCIVKE-G----------DPICEMFFITQGTLLTTTTNGG----RNTSVFKKYLSTGD 414 (569)
Q Consensus 354 ~~L~~L~~~lk~----~~f~kGe~Iire-G----------d~~~~myFI~~G~v~v~~~dgg----~~~~~~l~~L~~Gd 414 (569)
+-+++..+.++| +..-.+++++-. | ++.++++++++|.+.+...|+| +. .-..+++||
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~---~dv~i~eGd 88 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKF---IDIIINEGD 88 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEE---EEEEECTTE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccce---eeEEECCCC
Confidence 456677777888 544446665432 3 3456999999999998877645 11 125699999
Q ss_pred EEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHHH
Q 008346 415 FWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRA 458 (569)
Q Consensus 415 fFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~~ 458 (569)
+|=-- + +.|.| -++-+++..+.+.++.-+.
T Consensus 89 mfllP-------~----gvpHs---P~r~~e~v~lviErkR~~~ 118 (176)
T 1zvf_A 89 SYLLP-------G----NVPHS---PVRFADTVGIVVEQDRPGG 118 (176)
T ss_dssp EEEEC-------T----TCCEE---EEECTTCEEEEEEECCCSS
T ss_pred EEEcC-------C----CCCcC---CcccCCcEEEEEEecCCCC
Confidence 87522 1 11222 2345788888888766443
No 92
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=61.61 E-value=11 Score=35.00 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCcc----EEECC-CCEEEe-cC----------CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 353 KSILSEMCKCLKP----VLYVQ-ECCIVK-EG----------DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 353 ~~~L~~L~~~lk~----~~f~k-Ge~Iir-eG----------d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
.+-+++..+.++| +..-. +++++- .| ++.++++++++|.+.+...|+|+.. -..+++||+|
T Consensus 11 ~~~l~~~~~~~~PpV~n~~v~nd~~~~V~~v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f 87 (174)
T 1yfu_A 11 PRWIDEHAHLLKPPVGNRQVWQDSDFIVTVVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIF 87 (174)
T ss_dssp HHHHHHTGGGSSTTTCEEESSSSCSEEEEEECSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEE
T ss_pred HHHHHHhhhhcCCCcCCEEEEcCCcEEEEEEcCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEE
Confidence 3556666777777 43222 444433 22 2578999999999998877755321 2569999987
Q ss_pred ecchhhhcCCCCCCCCCCCcccEEEEec-eeEEEEecHHHHHHH
Q 008346 417 GEELATSALDPDPLSNIPHSNCALISVT-NVEAFAINTDDLRAI 459 (569)
Q Consensus 417 GE~~L~wald~~s~~~~~~st~tV~Alt-~~ell~L~~edl~~l 459 (569)
=-- . +.+. +-++-+ ++..+.+.+..-+..
T Consensus 88 ~lP--------~---gvpH---~P~r~~~e~~~lviE~~r~~~~ 117 (174)
T 1yfu_A 88 LLP--------P---HVRH---SPQRPEAGSACLVIERQRPAGM 117 (174)
T ss_dssp EEC--------T---TCCE---EEEBCCTTCEEEEEEECCCTTC
T ss_pred EeC--------C---CCCc---CccccCCCCEEEEEEeCCCCCC
Confidence 522 1 1111 233455 888888877664433
No 93
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=59.83 E-value=22 Score=28.84 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=33.2
Q ss_pred ccEEECCCCEEEec--CCC-cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCIVKE--GDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~Iire--Gd~-~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
....+.||..+-.. -.+ ..++++|++|++++.. + ++. ..+++||++=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV-D-GHT-----QALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE-T-TEE-----EEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 33567888876544 334 7899999999999765 3 332 4689999764
No 94
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=59.39 E-value=21 Score=29.89 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=35.1
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+-..-.+..++++|++|++++.. + ++. ..+++||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-G-EET-----RVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-T-TEE-----EEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 3446678888776555667899999999999865 3 332 4689999764
No 95
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=58.87 E-value=27 Score=27.65 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=31.6
Q ss_pred cEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+-..-.+ .+++++|++|++++.. + ++. ..+++||.+=
T Consensus 32 ~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-~-~~~-----~~l~~Gd~~~ 78 (105)
T 1v70_A 32 LYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-G-EEE-----ALLAPGMAAF 78 (105)
T ss_dssp EEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 3567788776443334 4689999999999765 3 332 5689999763
No 96
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=56.66 E-value=13 Score=30.40 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=39.4
Q ss_pred CCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEE
Q 008346 369 VQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEA 448 (569)
Q Consensus 369 ~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~el 448 (569)
.+|+...+..+..+++++|++|.+++.. ++++. ..+++||.+=-. + +. ....++.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~-~~~~~-----~~l~~Gd~~~ip-------~----~~---~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDF-ADGGS-----MTIREGEMAVVP-------K----SV---SHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEE-TTSCE-----EEECTTEEEEEC-------T----TC---CEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEE-CCCcE-----EEECCCCEEEEC-------C----CC---cEeeEeCCCeEE
Confidence 3454433444334899999999999765 33232 569999976422 1 11 123444567888
Q ss_pred EEecHHHH
Q 008346 449 FAINTDDL 456 (569)
Q Consensus 449 l~L~~edl 456 (569)
+.++....
T Consensus 96 l~i~~~~~ 103 (107)
T 2i45_A 96 VLIELSDP 103 (107)
T ss_dssp EEEECC--
T ss_pred EEEECCCc
Confidence 87776554
No 97
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=50.46 E-value=8.7 Score=31.21 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=31.3
Q ss_pred ccEEECCCCEE-EecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCI-VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~I-ireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
....+.||... .+.-+..+++++|++|.+++...+|.+. ..+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~~-----~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVT-----SQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEEE-----EEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCEE-----EEEcCCCEEE
Confidence 34567777754 2333323469999999999765332132 5689999764
No 98
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=50.38 E-value=16 Score=31.92 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.1
Q ss_pred ccchhcHhhhhhcCChh
Q 008346 125 FYLNSFLKDLLSCLPIP 141 (569)
Q Consensus 125 ~Yl~sF~iDlla~lPl~ 141 (569)
+|++-=++|++|.+|+-
T Consensus 66 ~y~~~niiDllailp~~ 82 (132)
T 1ors_C 66 GYVKKTLYEIPALVPAG 82 (132)
T ss_dssp TTTTTCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78876578999999974
No 99
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=49.44 E-value=26 Score=32.14 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=35.8
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||.........++++++|++|++++...+ ++.. ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~----~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE----EEEECCCCEEE
Confidence 445678888776554445789999999999986643 3332 35799999764
No 100
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=48.87 E-value=23 Score=31.02 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=30.3
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||+.-.+ ...+|+++|++|++++.. + |+. ..+++||.+-
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~-~-g~~-----~~l~~GD~i~ 104 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH-E-GET-----MIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE-T-TEE-----EEEETTCEEE
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE-C-CEE-----EEECCCcEEE
Confidence 45677743233 247899999999999765 3 443 4699999765
No 101
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=47.79 E-value=17 Score=33.70 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=32.8
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
+....+.||...-.--....+.++|++|++++...+ |+. ..+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge~-----~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GAK-----RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GCE-----EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-CeE-----EEECCCCEE
Confidence 444567777644333345668899999999986532 332 569999998
No 102
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=47.70 E-value=21 Score=32.69 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=32.3
Q ss_pred EEECCCCEEE---ecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIV---KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~Ii---reGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||...- .-..+.+++++|++|++++...+++.. ....+++||.+=
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~---~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENP---KEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSC---EEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCc---ccEEECCCCEEE
Confidence 4567776543 223455899999999999876432111 125699999864
No 103
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=47.26 E-value=94 Score=24.78 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=30.4
Q ss_pred EEECCCCEEEecCCCc-CeE-EEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPI-CEM-FFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~-~~m-yFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.+|..+-..-.+. .++ ++|++|++++...+| +. ..+++||.+=
T Consensus 38 ~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~-~~-----~~l~~Gd~~~ 85 (110)
T 2q30_A 38 FTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGD-AV-----IPAPRGAVLV 85 (110)
T ss_dssp EEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGG-CE-----EEECTTEEEE
T ss_pred EEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCC-EE-----EEECCCCEEE
Confidence 4577887765433333 566 899999999765323 32 4689999764
No 104
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=45.57 E-value=15 Score=38.68 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=36.9
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEec
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 418 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE 418 (569)
....+.||+.+-..-....++|||++|+-..+..+|.+ ..+++||++--
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~------~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK------VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEE------EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEE------EEEcCCCEEEE
Confidence 55788999988766667779999999987654445433 56899998753
No 105
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=45.51 E-value=33 Score=31.06 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=32.1
Q ss_pred cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+-..-.+..++++|++|++++.. + ++. ..+++||++=
T Consensus 60 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-~-~~~-----~~l~~Gd~i~ 105 (167)
T 3ibm_A 60 YFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-D-DRV-----EPLTPLDCVY 105 (167)
T ss_dssp EEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 34566776554444468999999999999764 3 332 5689999764
No 106
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=45.42 E-value=21 Score=35.75 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=54.1
Q ss_pred HHHHHHHhcCcc----EEECCCCEE------------EecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 354 SILSEMCKCLKP----VLYVQECCI------------VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 354 ~~L~~L~~~lk~----~~f~kGe~I------------ireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+-+++..+.++| +..-.++++ ++ -|..+|+|++++|.+.+-..|+|+. .-..+++|++|=
T Consensus 9 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~---~~V~i~eGemfl 84 (286)
T 2qnk_A 9 AWVKENRGSFQPPVCNKLMHQEQLKVMFIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQGKH---RDVVIRQGEIFL 84 (286)
T ss_dssp HHHHHTGGGSSTTTCEEEEEESSEEEEEECSCBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEE---EEEEECTTEEEE
T ss_pred HHHHhhHhhcCCCcccEEEEeccEEEEEEeCCCcCccCc-CCCCCeEEEEEeCeEEEEEEeCCce---eeEEECCCeEEE
Confidence 345555666777 433334443 34 4568999999999999877775532 125689999875
Q ss_pred cchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecHHHHH
Q 008346 418 EELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLR 457 (569)
Q Consensus 418 E~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~edl~ 457 (569)
-- . +.|.+ =++-++|..+++.+...+
T Consensus 85 lP--------~---gv~Hs---P~r~~et~gLviE~~R~~ 110 (286)
T 2qnk_A 85 LP--------A---RVPHS---PQRFANTVGLVVERRRLE 110 (286)
T ss_dssp EC--------T---TCCEE---EEECTTCEEEEEEECCCT
T ss_pred eC--------C---CCCcC---CcccCCeEEEEEeecCCC
Confidence 21 1 11222 245678999998876544
No 107
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=44.79 E-value=44 Score=31.68 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=46.8
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEE
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS 442 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~A 442 (569)
+....+.||+.+-..-.+.+++++|++|++++.. + |+. ..+++||.+=-. + .....+++
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-~-g~~-----~~l~~Gd~i~ip-------~-------~~~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-D-GKP-----FIVKKGESAVLP-------A-------NIPHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-T-TEE-----EEEETTEEEEEC-------T-------TSCEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-C-CEE-----EEECCCCEEEEC-------C-------CCcEEEEe
Confidence 4457789999987666678899999999999765 3 332 568999975422 1 12245677
Q ss_pred -eceeEEEEe
Q 008346 443 -VTNVEAFAI 451 (569)
Q Consensus 443 -lt~~ell~L 451 (569)
.+++.++..
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 777776543
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=44.48 E-value=48 Score=26.22 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=34.9
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEecH
Q 008346 379 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINT 453 (569)
Q Consensus 379 d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~~ 453 (569)
+...++++|++|.+++.. ++.. ..+++||.+=-. + .....+++.+++.++.++.
T Consensus 48 ~~~~e~~~v~~G~~~~~~-~~~~------~~l~~Gd~~~ip-------~-------~~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIAF-RDQN------ITLQAGEMYVIP-------K-------GVEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp TTCCEEEEEEESEEEEEC-SSCE------EEEETTEEEEEC-------T-------TCCBEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEEE-CCEE------EEEcCCCEEEEC-------C-------CCeEeeEcCCCCEEEEEEc
Confidence 334899999999998754 3332 458999975321 1 1123455567888887753
No 109
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=43.32 E-value=36 Score=32.71 Aligned_cols=46 Identities=13% Similarity=0.000 Sum_probs=33.1
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||...=.--.+.+|+|+|++|.++....+ ++. ..+++||.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~-g~~-----~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLRN-APD-----LMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEETT-SCC-----EEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEECC-CCE-----EecCCCCEEE
Confidence 556777665444567899999999999976643 332 4589999754
No 110
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=42.84 E-value=20 Score=32.21 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=39.9
Q ss_pred EecCCCcCeEEEEEeeEEEEEEecC--CeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEeceeEEEEec
Q 008346 375 VKEGDPICEMFFITQGTLLTTTTNG--GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN 452 (569)
Q Consensus 375 ireGd~~~~myFI~~G~v~v~~~dg--g~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt~~ell~L~ 452 (569)
++..+..|++|+|++|++.+...++ +.... -...+++|+++=-- +. .. .+-.|-++|.++.+.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvVP--------kG-----ve-H~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNVP--------AE-----CW-FYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEEC--------TT-----CE-EEEEECTTCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEeC--------CC-----cc-CcccCCCceEEEEEE
Confidence 4556778999999999999876532 11000 12568999987421 10 11 233556777777776
Q ss_pred HH
Q 008346 453 TD 454 (569)
Q Consensus 453 ~e 454 (569)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 111
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=42.15 E-value=27 Score=32.15 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 379 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 379 d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+++++||++|.+++.. +++. ..+++||.+=
T Consensus 108 h~gEE~~yVLeG~v~vtl--~g~~-----~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV--CKNK-----FLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE--TTEE-----EEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE--CCEE-----EEEcCCCEEE
Confidence 457899999999999866 3442 5699999764
No 112
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=41.94 E-value=52 Score=29.85 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=32.6
Q ss_pred cEEECCCCEEEe--cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVK--EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~Iir--eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||...-. -.....++++|++|++++.. +++. ..+++||.+=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~~-----~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQW-----HELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTEE-----EEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCEE-----EEeCCCCEEE
Confidence 356788887652 22445899999999999765 3442 5699999764
No 113
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=41.93 E-value=28 Score=31.27 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=31.4
Q ss_pred cEEECCCCEE--EecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCI--VKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~I--ireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||... .+..+..+++++|++|++++.. + ++. ..+++||.+-
T Consensus 47 ~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-~-~~~-----~~l~~GD~i~ 94 (163)
T 3i7d_A 47 LVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-D-QGE-----HPMVPGDCAA 94 (163)
T ss_dssp EEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 4567777754 2333334799999999999865 3 332 5689999764
No 114
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=41.91 E-value=49 Score=28.34 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=31.2
Q ss_pred cEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+-.--.+ ..++++|++|++++.. + ++. ..+++||.+=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-~-~~~-----~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-N-GKD-----VPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-T-TEE-----EEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE-C-CEE-----EEeCCCcEEE
Confidence 3567788765432233 4799999999999754 3 342 5689999763
No 115
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=41.89 E-value=25 Score=31.13 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=31.1
Q ss_pred cEEECCCCE--EEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 365 PVLYVQECC--IVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 365 ~~~f~kGe~--IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
...+.||.. -.+.....+++++|++|++++.. + ++. ..+++||++
T Consensus 50 ~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~i 96 (162)
T 3l2h_A 50 LIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-E-NDQ-----YPIAPGDFV 96 (162)
T ss_dssp EEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-T-TEE-----EEECTTCEE
T ss_pred EEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-C-CEE-----EEeCCCCEE
Confidence 356777763 22333357899999999999764 3 332 568999987
No 116
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=41.74 E-value=28 Score=31.47 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.2
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 380 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 380 ~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+++++|++|++++.. +|+. ..+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~~-----~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGRK-----VSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTEE-----EEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCEE-----EEEcCCCEEE
Confidence 47899999999999874 4453 5699999753
No 117
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=41.06 E-value=28 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 379 DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 379 d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+++++|++|.+++...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 46789999999999986643321 03489999754
No 118
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=40.16 E-value=29 Score=31.23 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=29.9
Q ss_pred EECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 367 LYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 367 ~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+.||..+-..-.+..++++|++|++++.. + ++. ..+++||++=
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v-~-g~~-----~~l~~Gd~i~ 93 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV-G-ETI-----SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE-T-TEE-----EEEETTCEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 455655543334456789999999999764 3 332 5689999763
No 119
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=39.49 E-value=63 Score=29.96 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=35.0
Q ss_pred CccEEECCCCEEEec-CCCcCeEEEEEeeEEEEEEecC----CeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKE-GDPICEMFFITQGTLLTTTTNG----GRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~Iire-Gd~~~~myFI~~G~v~v~~~dg----g~~~~~~l~~L~~GdfFG 417 (569)
+....+.||...-.- ....+|+++|++|++++...++ ++. ....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~---~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL---YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE---EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE---EEEEECCCCEEE
Confidence 344677888765433 3336899999999999866543 331 125699999764
No 120
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=39.19 E-value=24 Score=29.88 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCchhhhhHHhhcHH-HHHHHHHHHHc---CCcCCCc--ccceec
Q 008346 523 GGKPSKFGTAIYATQF-FTYVRRSVKRN---GGLPGGR--VNITLA 562 (569)
Q Consensus 523 ~~~~~~~~~~~~~sr~-~~~~~~~~~~~---~~~~~~~--~~~~~~ 562 (569)
+.+|.++|.-+|.||. |++.++..|+. +.++.|- |.+.|+
T Consensus 34 g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~~~~~P~g~~rv~v~lP 79 (101)
T 2w7n_A 34 GKPQATFATSLGLTRGAVSQAVHRVWAAFEDKNLPEGYARVTAVLP 79 (101)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCCCTTEEEEEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHhccCCCCCeeEEeeecC
Confidence 5679999999999999 99999998866 4688775 444443
No 121
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=38.72 E-value=28 Score=31.66 Aligned_cols=45 Identities=9% Similarity=-0.107 Sum_probs=30.7
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||..+-..-.+..++++|++|++++.. + ++. ..+++||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-~-g~~-----~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV-G-RAV-----SAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 3456665554444556789999999999754 3 342 5689999764
No 122
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=38.48 E-value=59 Score=30.27 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=36.5
Q ss_pred hcCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 361 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 361 ~~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+.....+.||..+-.-..++.++.+|++|..+ .+++ .+.+||+.=
T Consensus 125 ~~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~---de~~--------~~~~Gd~~~ 170 (195)
T 2q1z_B 125 AIARLLWIPGGQAVPDHGHRGLELTLVLQGAFR---DETD--------RFGAGDIEI 170 (195)
T ss_dssp SEEEEEEECTTCBCCCCCCSSCEEEEEEESEEE---CSSS--------EEETTCEEE
T ss_pred cEEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE---CCcE--------EECCCeEEE
Confidence 345678899999999999999999999999876 2222 379999754
No 123
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=38.44 E-value=53 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.+|...-..-....++++|++|++++.. + ++. ..+++||++=
T Consensus 39 ~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-~-~~~-----~~l~~Gd~~~ 83 (128)
T 4i4a_A 39 CIVRPETKSFRHSHNEYELFIVIQGNAIIRI-N-DED-----FPVTKGDLII 83 (128)
T ss_dssp EEECTTEECCCBCCSSEEEEEEEESEEEEEE-T-TEE-----EEEETTCEEE
T ss_pred EEECCCCccCCEecCCeEEEEEEeCEEEEEE-C-CEE-----EEECCCcEEE
Confidence 4455665433333457899999999999765 3 332 4689999764
No 124
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=38.40 E-value=31 Score=28.50 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=29.4
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeE-EecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKK-YLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~-~L~~GdfFG 417 (569)
..+.+|...-.--.+..++++|++|.+++.. ++.. . .+++||++=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~------~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL-EDQE------PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE-TTSC------CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE-CCEE------EEEeCCCCEEE
Confidence 3456666542222356789999999999765 3332 3 589999764
No 125
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=37.98 E-value=44 Score=32.13 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=36.6
Q ss_pred cCccEEECCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 362 CLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 362 ~lk~~~f~kGe~Iir-eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+....++||..+=. +-....+.++|++|+++... ||+. ..+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~~-----~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EENY-----YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTEE-----EEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCEE-----EEcCCCCEEE
Confidence 355678899987764 55667899999999998654 4443 5699999865
No 126
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=37.96 E-value=35 Score=30.31 Aligned_cols=48 Identities=6% Similarity=-0.068 Sum_probs=31.9
Q ss_pred cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCC-------eeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGG-------RNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg-------~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+-.--....++++|++|++++...+++ + ...+++||++=
T Consensus 45 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~-----~~~l~~Gd~i~ 99 (163)
T 1lr5_A 45 LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ-----EIPFFQNTTFS 99 (163)
T ss_dssp EEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE-----EEEECTTEEEE
T ss_pred EEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE-----EEEeCCCCEEE
Confidence 345677765422223467899999999998765422 3 25699999764
No 127
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=36.22 E-value=38 Score=28.64 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=30.1
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||...-.--.+..++++|++|.+++.. ++ +. ..+++||++=
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i-~~-~~-----~~l~~Gd~i~ 97 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK-EQ-GE-----ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC-SS-CE-----EEEETTEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE-CC-EE-----EEECCCCEEE
Confidence 4455665543333447899999999998754 33 32 4589999764
No 128
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=36.16 E-value=51 Score=31.53 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=34.4
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcE
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDF 415 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~Gdf 415 (569)
+....+.||..+-.--.+..++++|++|.+++.. + |+. ..+.+||.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~ 81 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV-G-DVT-----RKMTALES 81 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE-T-TEE-----EEEETTTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE-C-CEE-----EEECCCCE
Confidence 3445588888876666678899999999999865 3 342 56899993
No 129
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=35.99 E-value=31 Score=35.80 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=36.6
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEec
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 418 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE 418 (569)
....+.||+.+-..-...++++||++|+-..+..||.+ ..+++||++=-
T Consensus 106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~vdG~~------~~~~~GD~v~i 154 (368)
T 3nw4_A 106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP------VRMSRGDLLLT 154 (368)
T ss_dssp EEEEECTTCEEEEEEESSCEEEECSSCEEEEEEETTEE------EEEETTCEEEE
T ss_pred EEEEECCCCccCceecccceEEEEEecceEEEEECCEE------EEEeCCCEEEE
Confidence 34678999988777667889999999987533445543 56899998753
No 130
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=35.68 E-value=32 Score=34.11 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=43.0
Q ss_pred cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEec
Q 008346 365 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVT 444 (569)
Q Consensus 365 ~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Alt 444 (569)
...+.||.---.....++++.||++|++++...+ |++ ..+++||++=-.+ + ...+++..+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l~~-g~~-----~~L~~Gds~y~p~-----------~---~~H~~~N~~ 133 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNTS-SSS-----KKLTVDSYAYLPP-----------N---FHHSLDCVE 133 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC---CCC-----EEECTTEEEEECT-----------T---CCCEEEESS
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEECC-CcE-----EEEcCCCEEEECC-----------C---CCEEEEeCC
Confidence 3567777654333455889999999999986532 342 4699999765331 1 112334457
Q ss_pred eeEEEEecH
Q 008346 445 NVEAFAINT 453 (569)
Q Consensus 445 ~~ell~L~~ 453 (569)
+++++.+.+
T Consensus 134 ~Ar~l~V~k 142 (266)
T 4e2q_A 134 SATLVVFER 142 (266)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 788777754
No 131
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=35.65 E-value=63 Score=32.94 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=36.2
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+-..-.+..++++|++|++++...+ +|+.. ...+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344667888866433334889999999999987755 45521 24699999753
No 132
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=35.21 E-value=30 Score=35.49 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=34.3
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
....+.||+..-.--....++++|++|+.+....+| +. ..+++||++=
T Consensus 103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~g-~~-----~~l~~GD~~~ 150 (354)
T 2d40_A 103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDG-ER-----TPMNEGDFIL 150 (354)
T ss_dssp EEEEECTTCEEEEEEESSCEEEEEEECSSCEEEETT-EE-----EECCTTCEEE
T ss_pred EEEEECCCCCcCCeecCcceEEEEEEEEEEEEEECC-EE-----EEEcCCCEEE
Confidence 345688888774434457799999999987644444 32 5699999875
No 133
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.73 E-value=61 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=31.4
Q ss_pred cEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+-.--.+..++++|++|++++.. ++.. ...+++||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-~~~~-----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-RGKP-----ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE-TTSC-----CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE-CCEE-----EEEECCCCEEE
Confidence 45667777654333345899999999999765 3322 13489999764
No 134
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=34.68 E-value=64 Score=28.42 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=36.8
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecc
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 419 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~ 419 (569)
+....++||..+-.-..+..+.++|++|+.+. .+|+... -..+++||+.=+.
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~---~~~~~~Gd~~~~p 97 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAG---GDTAIAPGYGYES 97 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGT---SEEEESSEEEEEC
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEec---ceEeCCCEEEEEC
Confidence 45577999999888777789999999999983 2232210 0347899987643
No 135
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=34.05 E-value=58 Score=27.18 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=29.5
Q ss_pred cEEECCCCEEE--ecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIV--KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~Ii--reGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||..+- +.-+....+|+|++|++++.. + ++. ..+++||++=
T Consensus 30 ~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i-~-~~~-----~~l~~Gd~i~ 77 (125)
T 3cew_A 30 INHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI-D-GEK-----IELQAGDWLR 77 (125)
T ss_dssp EEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE-T-TEE-----EEEETTEEEE
T ss_pred EEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 35567776552 333334457779999999765 3 332 4689999764
No 136
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=34.02 E-value=79 Score=31.82 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=34.4
Q ss_pred ccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 364 KPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 364 k~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
....+.||...--.-.+ .+++++|++|++++...+ +|+.. ...+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34567788765433234 899999999999987754 44211 25699999754
No 137
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=33.38 E-value=63 Score=31.80 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=37.6
Q ss_pred hcCccEEECCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 361 KCLKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 361 ~~lk~~~f~kGe~Iir-eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
-.+....++||..|-. +-..-.+.++|++|+..... +|+. ..+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~--~~~~-----~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQDW-----VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTEE-----EEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE--CCEE-----EEeCCCCEEE
Confidence 3456678999999985 55556689999999998643 4443 5689999864
No 138
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=33.16 E-value=67 Score=30.81 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=31.0
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||.-.-..- .+++++|++|++++.. + |++ ..+++||++=
T Consensus 55 ~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 97 (246)
T 1sfn_A 55 AEMPAGAQATESV--YQRFAFVLSGEVDVAV-G-GET-----RTLREYDYVY 97 (246)
T ss_dssp EEECTTCEEECCS--SEEEEEEEEEEEEEEC-S-SCE-----EEECTTEEEE
T ss_pred EEECCCCcCCCCc--eeEEEEEEECEEEEEE-C-CEE-----EEECCCCEEE
Confidence 5677877654442 7889999999999764 3 332 5699999764
No 139
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=32.96 E-value=46 Score=32.42 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=28.7
Q ss_pred CCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 370 QECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 370 kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+|+..+. --+.+|+.+|++|++++.. +|+. ..+++||.+-
T Consensus 55 ~g~~~v~-~~p~dE~~~VleG~~~lt~--~g~~-----~~~~~Gd~~~ 94 (238)
T 3myx_A 55 GTALSVE-AYPYTEMLVMHRGSVTLTS--GTDS-----VTLSTGESAV 94 (238)
T ss_dssp CSEEEES-SCSSEEEEEEEESEEEEEE--TTEE-----EEEETTCEEE
T ss_pred ccccccc-cCCCcEEEEEEEeEEEEEC--CCeE-----EEEcCCCEEE
Confidence 5555442 3456899999999999865 4553 4589999764
No 140
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=31.84 E-value=66 Score=31.33 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=34.1
Q ss_pred CccEEECCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~Iir-eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+-. .-.+.+++++|++|++++.. + ++. ..+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-~-~~~-----~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-D-NEW-----YPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-T-TEE-----EEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 34456888887643 34467899999999999765 3 342 5689999764
No 141
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=31.35 E-value=51 Score=34.62 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=38.2
Q ss_pred cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 362 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
.+....+.||..+..--...+++++|++|+.++...+ ++.. ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD----SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE----EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe----EEEecCCCEEE
Confidence 3556788998876666667899999999999976543 2221 35689999863
No 142
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=31.28 E-value=49 Score=28.03 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=23.3
Q ss_pred cCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 381 ICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 381 ~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+++++|++|.+++... +++. ..+++||++=
T Consensus 64 ~~E~~~vl~G~~~~~~~-~~~~-----~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFEYE-DIGA-----VMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEEET-TTEE-----EEEETTCEEE
T ss_pred CcEEEEEEeCEEEEEEC-CcEE-----EEecCCCEEE
Confidence 48999999999997663 3242 5689999754
No 143
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=31.10 E-value=80 Score=31.16 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=32.7
Q ss_pred cEEECCCCEEE-ecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIV-KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~Ii-reGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.....+|...- +..+..+++++|++|++++.. + |+. ..+++||++=
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~-~-~~~-----~~l~~Gd~~~ 96 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-D-GER-----YLLISGDYAN 96 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEEE-T-TEE-----EEECTTCEEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEEE-C-CEE-----EEECCCCEEE
Confidence 34677887663 334338999999999999764 3 442 5699999754
No 144
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=30.89 E-value=40 Score=35.35 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=48.8
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEE-
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALIS- 442 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~A- 442 (569)
....+.||+..-..-...+++|+|++|+..+. . ||+. ..+++||+|=.-.. ....+..
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~-V-~ge~-----~~~~~GD~~~iP~g--------------~~H~~~N~ 355 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI-V-GGKR-----FDWSEHDIFCVPAW--------------TWHEHCNT 355 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEE-E-TTEE-----EEECTTCEEEECTT--------------CCEEEEEC
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEE-E-CCEE-----EEEeCCCEEEECCC--------------CeEEeEeC
Confidence 44577888877666667789999999998543 3 4442 56899999875421 0122222
Q ss_pred --eceeEEEEecHHHHHHHHH
Q 008346 443 --VTNVEAFAINTDDLRAIVY 461 (569)
Q Consensus 443 --lt~~ell~L~~edl~~l~~ 461 (569)
-+++.++.++-.-+.+-+.
T Consensus 356 g~~e~~~ll~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 356 QERDDACLFSFNDFPVMEKLG 376 (394)
T ss_dssp CSSCCEEEEEEESHHHHHHTT
T ss_pred CCCCCeEEEEeeCHHHHHHhh
Confidence 3467777776555554443
No 145
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=30.49 E-value=58 Score=34.44 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=39.0
Q ss_pred cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 362 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
.+....+.||..+..--...+++++|++|+..+...+ ++. ....+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~----~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR----DSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE----EEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC----EEEEeCCCCEEE
Confidence 4556788999887777666899999999999986643 322 136799999864
No 146
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=30.28 E-value=85 Score=31.55 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=35.9
Q ss_pred CccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+-..-.+ .+++++|++|++++...+ +|+. ....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~---~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA---SVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE---EEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE---EEEEECCCCEEE
Confidence 445678888876544334 489999999999987532 4431 125699999875
No 147
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=29.40 E-value=65 Score=34.20 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=37.6
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+...-..++++++|++|+.++...+ +++. ...+++||++-
T Consensus 88 ~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~----~~~l~~GDv~~ 139 (445)
T 2cav_A 88 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD----TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE----EEEEETTEEEE
T ss_pred EEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE----EEEecCCCEEE
Confidence 455678898877666566899999999999876543 3332 36799999864
No 148
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=29.40 E-value=70 Score=30.49 Aligned_cols=46 Identities=9% Similarity=-0.130 Sum_probs=33.9
Q ss_pred EEECC-CCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEec
Q 008346 366 VLYVQ-ECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGE 418 (569)
Q Consensus 366 ~~f~k-Ge~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE 418 (569)
..+.| |..+-..-.+..++++|++|++++.. +++. ..+++||.+--
T Consensus 150 ~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i-~~~~------~~l~~Gd~i~i 196 (243)
T 3h7j_A 150 AKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV-EGCT------VEMKFGTAYFC 196 (243)
T ss_dssp EEECTTTEEEEEECCSSEEEEEECSSCEEEEE-TTEE------EEECTTCEEEE
T ss_pred EEECCCCCcCCCEeCCCcEEEEEEECEEEEEE-CCEE------EEECCCCEEEE
Confidence 45888 87776555667899999999999764 3332 45899998653
No 149
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=29.11 E-value=86 Score=27.20 Aligned_cols=50 Identities=10% Similarity=-0.047 Sum_probs=30.0
Q ss_pred EEECCCCEEEe-cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEE
Q 008346 366 VLYVQECCIVK-EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFW 416 (569)
Q Consensus 366 ~~f~kGe~Iir-eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfF 416 (569)
..+.||..+-. .-+..+++++|++|++++...+...... ....+.+||.+
T Consensus 48 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~-~~~~l~~Gd~i 98 (148)
T 2oa2_A 48 MSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLH-FQEEVFDDYAI 98 (148)
T ss_dssp EEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCC-EEEEEETTCEE
T ss_pred EEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccce-eeEEECCCCEE
Confidence 45677765432 2233569999999999987644320000 01358999964
No 150
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=28.96 E-value=1.1e+02 Score=31.03 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=35.3
Q ss_pred CccEEECCCCEEEecCCCc-CeEEEEEeeEEEEEEe-cCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPI-CEMFFITQGTLLTTTT-NGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~-~~myFI~~G~v~v~~~-dgg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||...-..-.+. +++++|++|++++... .+|+. ....+++||.+=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~---~~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA---RTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE---EEEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE---EEEEEcCCCEEE
Confidence 3445678888765444445 8999999999997654 23321 125689999875
No 151
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=28.21 E-value=42 Score=28.60 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=22.8
Q ss_pred CcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 380 PICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 380 ~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+..++++|++|++++....+++. ..+++||++=
T Consensus 58 ~~~e~~~vl~G~~~~~~~~~~~~-----~~l~~Gd~~~ 90 (145)
T 3ht1_A 58 EWEHEIYVLEGSMGLVLPDQGRT-----EEVGPGEAIF 90 (145)
T ss_dssp SSCEEEEEEEECEEEEEGGGTEE-----EEECTTCEEE
T ss_pred CCceEEEEEEeEEEEEEeECCEE-----EEECCCCEEE
Confidence 45667789999999763123342 5689999764
No 152
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=27.80 E-value=52 Score=31.80 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=30.2
Q ss_pred EEECCCCEEEec-C-CCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKE-G-DPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~Iire-G-d~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
..+.||.-.-.. . ...+++++|++|++++.. +|++ ..|++||.+=
T Consensus 64 ~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~--~~~~-----~~L~~Gd~~~ 110 (261)
T 1rc6_A 64 VTLHQNGGNQQGFGGEGIETFLYVISGNITAKA--EGKT-----FALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE--TTEE-----EEEETTEEEE
T ss_pred EEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE--CCEE-----EEECCCCEEE
Confidence 455666544322 2 235789999999999865 3443 5699999765
No 153
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=26.31 E-value=65 Score=31.33 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=29.8
Q ss_pred EEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 366 VLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 366 ~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
-..+||....... ..+|+..|++|++++.. ++|+. ..+++||.|-
T Consensus 172 W~~tpG~~~~~~~-~~~E~~~ILeG~v~lt~-~~G~~-----~~~~aGD~~~ 216 (238)
T 3myx_A 172 WDSTPYERISRPH-KIHELMNLIEGRVVLSL-ENGSS-----LTVNTGDTVF 216 (238)
T ss_dssp EEECCEEBCCEEC-SSCEEEEEEECCEEEEE-TTSCE-----EEECTTCEEE
T ss_pred EEeCCCEEECCcC-CCCEEEEEEEeEEEEEe-CCCCE-----EEECCCCEEE
Confidence 3455655332211 35799999999999865 45553 5689999875
No 154
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=26.02 E-value=54 Score=32.29 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=31.3
Q ss_pred cEEECCCCEEEe--cCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 365 PVLYVQECCIVK--EGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 365 ~~~f~kGe~Iir--eGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
...+.||.-.-. .....+++++|++|++++.. + +++ ..+++||++=
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v-~-g~~-----~~L~~GD~i~ 119 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL-Q-GQV-----HAMQPGGYAF 119 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE-S-SCE-----EEECTTEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE-C-CEE-----EEECCCCEEE
Confidence 345667766511 22447899999999999865 3 332 5699999864
No 155
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=25.90 E-value=39 Score=31.20 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=18.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh
Q 008346 483 EWRTSKACVIQAAWCRYKKRKLE 505 (569)
Q Consensus 483 ~~r~~~~~~iq~a~rr~~~r~~~ 505 (569)
+-+++++..||+|||+|..|.-.
T Consensus 127 ~~e~~aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 127 KHEEVSAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 56788999999999999766543
No 156
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=25.75 E-value=75 Score=28.67 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=48.3
Q ss_pred cCccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEE
Q 008346 362 CLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALI 441 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~ 441 (569)
......++||..+-.-..++.+..+|++|..+.. ++++ .+.+||+.=+.. .+..+..
T Consensus 43 ~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~--e~~~-------~~~~Gd~~~~P~--------------g~~H~~~ 99 (159)
T 3ebr_A 43 TITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRYK--EHDW-------VAHAGSVVYETA--------------STRHTPQ 99 (159)
T ss_dssp EEEEEEECSSCBCCCEEESSCEEEEEEESCEEET--TSSC-------CBCTTCEEEECS--------------SEEECEE
T ss_pred EEEEEEECCCCCcccccCCCCEEEEEEEeEEEEe--CCCe-------EECCCeEEEECC--------------CCcceeE
Confidence 3455778999998887778899999999998742 2332 379999865431 2334556
Q ss_pred Ee----ceeEEEEecHHH
Q 008346 442 SV----TNVEAFAINTDD 455 (569)
Q Consensus 442 Al----t~~ell~L~~ed 455 (569)
+. ++|.++......
T Consensus 100 ~~~~~~e~~~~~~~~~G~ 117 (159)
T 3ebr_A 100 SAYAEGPDIITFNIVAGE 117 (159)
T ss_dssp ESSSSSSCEEEEEEEESC
T ss_pred eCCCCCCCEEEEEEecCc
Confidence 66 778877743333
No 157
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.11 E-value=76 Score=31.33 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=39.6
Q ss_pred HHHhcCccEEECCCCEEE-ecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 358 EMCKCLKPVLYVQECCIV-KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 358 ~L~~~lk~~~f~kGe~Ii-reGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.-...++..+++||..|= .|-.+-.|-++|++|+.... .|| +. ..+++||+.-
T Consensus 183 ~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~-l~~-~~-----~~V~~GD~i~ 236 (266)
T 4e2q_A 183 AYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYR-LGD-NW-----YPVQAGDVIW 236 (266)
T ss_dssp TCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEE-ETT-EE-----EEEETTCEEE
T ss_pred ccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEE-ECC-EE-----EEecCCCEEE
Confidence 334556678899999994 67778889999999998754 333 32 4589999854
No 158
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=22.84 E-value=1.1e+02 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=30.4
Q ss_pred ECCCCEE---EecCCCcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 368 YVQECCI---VKEGDPICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 368 f~kGe~I---ireGd~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
.+.|... .+-.+..+|+++|++|++++...+ +|+. ....+++||++=
T Consensus 55 ~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~---~~~~L~~GD~v~ 105 (350)
T 1juh_A 55 APHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQ---QTRVLSSGDYGS 105 (350)
T ss_dssp ECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCC---EEEEEETTCEEE
T ss_pred cCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCce---EEEEECCCCEEE
Confidence 3444444 334444789999999999987754 3321 125699999753
No 159
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=22.47 E-value=1.7e+02 Score=31.50 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHhcCccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 356 LSEMCKCLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 356 L~~L~~~lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+..+-..+....+.||..+---=.+ ++++++|++|++++...+ .|...+ -..+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3444445666778888765443333 789999999999987654 233211 25699999864
No 160
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=21.81 E-value=23 Score=29.12 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=32.8
Q ss_pred CccEEECCCCEEEecCCCc-CeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIVKEGDPI-CEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~-~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
.+...++||+-+=..-.+. .+.++|.+|.+++...|+... ...+.+|+.+=
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~~ 70 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSYA 70 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCEE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEEE
Confidence 4556788888776554444 567888899999865554432 23478887653
No 161
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.51 E-value=1.5e+02 Score=31.65 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred cCccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 362 CLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 362 ~lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
.+....+.||..+-.-=.+ ++++++|++|++++...+ +|... .-..+++||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~--~~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERV--FDGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEE--eeeEEcCCCEEE
Confidence 3556778898865444334 689999999999987643 33321 125699999763
No 162
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.03 E-value=70 Score=30.81 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=33.1
Q ss_pred CccEEECCCCEEE-ecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEe
Q 008346 363 LKPVLYVQECCIV-KEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 363 lk~~~f~kGe~Ii-reGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFG 417 (569)
+....+.||..+- +.....+|+++|++|++++.. + ++. ..+++||++=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i-~-~~~-----~~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL-D-NNW-----IPVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES-S-SCE-----EEEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE-C-CEE-----EEeCCCCEEE
Confidence 3456788887653 233346899999999999754 3 332 5689999764
No 163
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=21.01 E-value=1.1e+02 Score=27.80 Aligned_cols=49 Identities=8% Similarity=-0.005 Sum_probs=36.4
Q ss_pred CccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecc
Q 008346 363 LKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEE 419 (569)
Q Consensus 363 lk~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~ 419 (569)
+....++||..+-.-..+..+..+|++|..+. .+++. ..+++||++=+.
T Consensus 45 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~--~~~~~------~~~~aGd~~~~P 93 (165)
T 3cjx_A 45 VMRASFAPGLTLPLHFHTGTVHMYTISGCWYY--TEYPG------QKQTAGCYLYEP 93 (165)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEESEEEE--TTCTT------SCEETTEEEEEC
T ss_pred EEEEEECCCCcCCcccCCCCEEEEEEEEEEEE--CCCce------EEECCCeEEEeC
Confidence 45677899999988888899999999999974 12212 236889887654
No 164
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=20.93 E-value=1.9e+02 Score=31.42 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHhcCccEEECCCCEEEecCC-CcCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 356 LSEMCKCLKPVLYVQECCIVKEGD-PICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 356 L~~L~~~lk~~~f~kGe~IireGd-~~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+..+-..+....+.||.++---=. .++++++|++|++++...+ .|+.. ....+++||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v--~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAI--LDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEE--EEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEE--EEEEecCCeEEE
Confidence 344434456678888887754323 3789999999999987654 34322 136799999763
No 165
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=20.85 E-value=1.7e+02 Score=31.70 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=39.5
Q ss_pred HHHHHhcCccEEECCCCEEEecCCC-cCeEEEEEeeEEEEEEec-CCeeeeeEeEEecCCcEEe
Q 008346 356 LSEMCKCLKPVLYVQECCIVKEGDP-ICEMFFITQGTLLTTTTN-GGRNTSVFKKYLSTGDFWG 417 (569)
Q Consensus 356 L~~L~~~lk~~~f~kGe~IireGd~-~~~myFI~~G~v~v~~~d-gg~~~~~~l~~L~~GdfFG 417 (569)
+..+-..+....+.||..+---=.+ ++++++|++|++++...+ +|... .-..+++||++=
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~--~~~~l~~GDv~v 428 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRV--YDEELQEGHVLV 428 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEE--EeEEEcCCcEEE
Confidence 3344445566788898865443334 789999999999986643 33321 125699999763
No 166
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}
Probab=20.25 E-value=1.3e+02 Score=28.73 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=43.8
Q ss_pred ccEEECCCCEEEecCCCcCeEEEEEeeEEEEEEecCCeeeeeEeEEecCCcEEecchhhhcCCCCCCCCCCCcccEEEEe
Q 008346 364 KPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISV 443 (569)
Q Consensus 364 k~~~f~kGe~IireGd~~~~myFI~~G~v~v~~~dgg~~~~~~l~~L~~GdfFGE~~L~wald~~s~~~~~~st~tV~Al 443 (569)
....+.||..+-.-..++.+..+|++|.+. |++. .+.+||+.=.. + .+..+..|.
T Consensus 46 ~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~----d~~~-------~~~~Gd~~~~P-------~-------g~~H~p~a~ 100 (223)
T 3o14_A 46 SIVRYAPGSRFSAHTHDGGEEFIVLDGVFQ----DEHG-------DYPAGTYVRNP-------P-------TTSHVPGSA 100 (223)
T ss_dssp EEEEECTTEECCCEECTTCEEEEEEEEEEE----ETTE-------EEETTEEEEEC-------T-------TCEECCEES
T ss_pred EEEEECCCCCcccccCCCCEEEEEEEeEEE----ECCe-------EECCCeEEEeC-------C-------CCccccEeC
Confidence 356789998888777889999999999986 3322 38999985432 1 122233456
Q ss_pred ceeEEEEec
Q 008346 444 TNVEAFAIN 452 (569)
Q Consensus 444 t~~ell~L~ 452 (569)
+.|.+++-.
T Consensus 101 ~gc~~~vk~ 109 (223)
T 3o14_A 101 EGCTIFVKL 109 (223)
T ss_dssp SCEEEEEEE
T ss_pred CCCEEEEEe
Confidence 778877765
Done!