Query 008348
Match_columns 569
No_of_seqs 343 out of 1650
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03066 Nucleoplasmin: Nucleo 100.0 4.6E-28 1E-32 227.3 12.8 98 2-100 5-111 (149)
2 COG0545 FkpA FKBP-type peptidy 99.9 5.4E-26 1.2E-30 220.4 13.0 119 444-568 86-205 (205)
3 KOG0544 FKBP-type peptidyl-pro 99.9 4E-23 8.8E-28 177.2 11.8 105 460-568 2-108 (108)
4 KOG0552 FKBP-type peptidyl-pro 99.9 4.6E-23 9.9E-28 204.0 13.5 110 455-568 116-226 (226)
5 PRK11570 peptidyl-prolyl cis-t 99.9 1.9E-22 4.1E-27 198.8 14.3 120 443-568 86-206 (206)
6 TIGR03516 ppisom_GldI peptidyl 99.9 5.8E-22 1.2E-26 191.2 14.6 118 450-569 60-177 (177)
7 KOG0549 FKBP-type peptidyl-pro 99.9 5.1E-22 1.1E-26 189.3 13.5 112 456-569 65-177 (188)
8 PRK10902 FKBP-type peptidyl-pr 99.8 1.9E-20 4.1E-25 191.2 14.5 119 444-569 131-250 (269)
9 PF00254 FKBP_C: FKBP-type pep 99.8 6.4E-18 1.4E-22 145.1 11.1 91 474-565 3-94 (94)
10 KOG0543 FKBP-type peptidyl-pro 99.5 3.8E-13 8.3E-18 142.4 13.2 106 458-568 83-190 (397)
11 PRK15095 FKBP-type peptidyl-pr 99.4 6.2E-13 1.4E-17 126.1 11.7 72 474-546 3-75 (156)
12 PRK10737 FKBP-type peptidyl-pr 99.3 3.9E-12 8.5E-17 124.7 10.1 72 474-546 1-72 (196)
13 COG1047 SlpA FKBP-type peptidy 99.3 5.5E-12 1.2E-16 121.0 10.6 72 474-546 1-73 (174)
14 TIGR00115 tig trigger factor. 98.8 3.5E-08 7.6E-13 106.5 11.4 87 474-569 145-231 (408)
15 PRK01490 tig trigger factor; P 98.7 8.6E-08 1.9E-12 104.4 11.5 86 475-569 157-242 (435)
16 KOG0543 FKBP-type peptidyl-pro 98.5 1.5E-07 3.2E-12 100.5 7.0 77 473-565 6-82 (397)
17 COG0544 Tig FKBP-type peptidyl 98.4 6.6E-07 1.4E-11 98.0 9.6 85 476-569 158-242 (441)
18 KOG0545 Aryl-hydrocarbon recep 96.5 0.00055 1.2E-08 69.7 -0.5 80 457-538 8-91 (329)
19 KOG0549 FKBP-type peptidyl-pro 96.3 0.0023 5E-08 62.3 2.5 41 508-548 1-41 (188)
20 PF10446 DUF2457: Protein of u 91.2 0.2 4.3E-06 54.9 3.8 8 504-511 387-394 (458)
21 PF10446 DUF2457: Protein of u 80.5 0.85 1.8E-05 50.1 1.6 8 191-198 102-109 (458)
22 PF02724 CDC45: CDC45-like pro 73.0 3.1 6.6E-05 48.2 3.5 19 73-91 71-90 (622)
23 PF01346 FKBP_N: Domain amino 57.7 6.5 0.00014 35.4 1.8 22 444-465 103-124 (124)
24 KOG3064 RNA-binding nuclear pr 48.1 9.2 0.0002 39.6 1.3 11 37-47 56-66 (303)
25 KOG0943 Predicted ubiquitin-pr 47.0 12 0.00026 46.1 2.2 8 89-96 1707-1714(3015)
26 PF04147 Nop14: Nop14-like fam 43.3 17 0.00037 43.7 2.8 13 475-487 537-549 (840)
27 PF02724 CDC45: CDC45-like pro 40.6 15 0.00033 42.6 1.8 15 455-469 494-508 (622)
28 KOG0943 Predicted ubiquitin-pr 37.6 24 0.00052 43.7 2.7 10 221-230 1937-1946(3015)
29 PRK00226 greA transcription el 33.3 1.1E+02 0.0024 29.0 6.1 24 515-538 122-145 (157)
30 KOG4264 Nucleo-cytoplasmic pro 32.5 33 0.00072 38.9 2.7 13 85-97 54-66 (694)
31 KOG1189 Global transcriptional 31.2 43 0.00094 39.7 3.4 10 24-33 788-797 (960)
32 PF01272 GreA_GreB: Transcript 24.5 1.7E+02 0.0037 24.3 5.1 24 515-538 42-65 (77)
33 PF05475 Chlam_vir: Chlamydia 24.1 3.9E+02 0.0084 27.2 8.1 80 13-92 151-237 (264)
34 PTZ00415 transmission-blocking 24.0 58 0.0013 42.0 2.9 7 281-287 328-334 (2849)
35 TIGR01461 greB transcription e 22.9 2.1E+02 0.0045 27.4 5.9 24 515-538 119-142 (156)
36 KOG1999 RNA polymerase II tran 21.2 58 0.0013 39.6 2.1 12 302-313 226-237 (1024)
No 1
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=99.95 E-value=4.6e-28 Score=227.26 Aligned_cols=98 Identities=31% Similarity=0.461 Sum_probs=80.6
Q ss_pred cEEEEEEcCCC-ceEeec-CC--CCceEEEEEEEeCCCCCCCceEEEEEe----CCCccEEEEeeCCCCcceeeeceeec
Q 008348 2 AFWGVEVKPGK-PFTHTA-DD--VRGRLHISQATLGIGTAPKKSVVQCNV----GDKSPVFLCSLFPEKAESCQLNLEFE 73 (569)
Q Consensus 2 ~FwG~eVkpgk-~~~~~~-~d--~~~~LhLsqasLg~~~~~e~~~V~v~v----~~~~~v~L~tL~~~~~eqvsLDL~F~ 73 (569)
.||||+|++++ .|+|.+ ++ ..++|||+|||||+++++++|+|+|.. +...+|+||||+++.++||+|++ |.
T Consensus 5 ~~wGceL~~~k~~~~f~~~~~d~~~h~L~L~~v~Lga~AKdE~~vVe~e~~~~eg~~~kv~lAtLk~s~~~~vsL~~-~~ 83 (149)
T PF03066_consen 5 YFWGCELKADKKDYTFKVDDNDENEHQLSLRQVCLGAGAKDELNVVEVEAMNYEGKPIKVPLATLKMSVQPMVSLDG-FE 83 (149)
T ss_dssp EEEEEEEBSTB-EEEE-TTSSSSSCEEEEEEEEEE-TTS-SSEEEEEEEEEBTTSCEEEEEEEEEBTTTBSEEEEEE-EE
T ss_pred EEEEEEEcCCCceEEEeCCCCCCcccEEEEEEeecCCCccCceeEEEEEeccCCCCeeEEEEEEecCCccceEEcCC-cc
Confidence 69999999997 899999 22 256999999999999999999999997 44467999999999999999996 44
Q ss_pred CCCcEEEEEE-cCceEEEeeeeeccCCC
Q 008348 74 EADEVVFSVI-GPQSVHLTGYFLGASGQ 100 (569)
Q Consensus 74 ~~~~V~f~~~-GsgsVHLsGY~~~~~~~ 100 (569)
.+++|+|+|+ |+|||||||||++...+
T Consensus 84 ~~ppVtf~L~~GsGPVhisG~~~~~~~~ 111 (149)
T PF03066_consen 84 ITPPVTFRLKCGSGPVHISGQHLVAMEE 111 (149)
T ss_dssp ESSSEEEEEEESSS-EEEEEEEEEE---
T ss_pred cCCCEEEEEEecCCCEEeeCcccccccc
Confidence 5778999998 99999999999877544
No 2
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.4e-26 Score=220.39 Aligned_cols=119 Identities=45% Similarity=0.743 Sum_probs=112.7
Q ss_pred CcccccccCCeEeCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHH
Q 008348 444 NSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVG 522 (569)
Q Consensus 444 ~~~~~~k~~~~~t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleea 522 (569)
..+++++...+.++++||.|+++..| .|..|..++.|+|||+|.+ .||++|||++.+ .|+.|+|| .+|+||.+|
T Consensus 86 f~~~~~k~~~v~~~~sgl~y~~~~~G--~G~~~~~~~~V~vhY~G~l-~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~eg 160 (205)
T COG0545 86 FLEKNAKEKGVKTLPSGLQYKVLKAG--DGAAPKKGDTVTVHYTGTL-IDGTVFDSSYDRGQPAEFPLG--GVIPGWDEG 160 (205)
T ss_pred HHhhhcccCCceECCCCcEEEEEecc--CCCCCCCCCEEEEEEEEec-CCCCccccccccCCCceeecC--CeeehHHHH
Confidence 33677889999999999999999999 7999999999999999999 899999999887 89999997 999999999
Q ss_pred HcCCccCcEEEEEEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEe
Q 008348 523 LEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 568 (569)
Q Consensus 523 L~gMkvGek~~V~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vk 568 (569)
|.+|++|++++|+|||++|||..|.++. ||||++|+|+|+|++|+
T Consensus 161 l~~M~vG~k~~l~IP~~laYG~~g~~g~-Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 161 LQGMKVGGKRKLTIPPELAYGERGVPGV-IPPNSTLVFEVELLDVK 205 (205)
T ss_pred HhhCCCCceEEEEeCchhccCcCCCCCC-CCCCCeEEEEEEEEecC
Confidence 9999999999999999999999998877 99999999999999984
No 3
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4e-23 Score=177.21 Aligned_cols=105 Identities=43% Similarity=0.777 Sum_probs=99.9
Q ss_pred ceEEEEEeecCCCC-ccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHHHcCCccCcEEEEEEc
Q 008348 460 GLVIQKLGTGKPDG-KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIP 537 (569)
Q Consensus 460 Gl~y~il~~G~~~G-~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VP 537 (569)
|+..++|..| +| ..+..|+.|++||++.+ .||+.|+|+..+ .||.|.||.+++|.||++++..|.+|++++++|+
T Consensus 2 Gv~~~~i~~G--dg~tfpK~Gqtvt~hYtg~L-~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~ 78 (108)
T KOG0544|consen 2 GVEKQVISPG--DGRTFPKKGQTVTVHYTGTL-QDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTIS 78 (108)
T ss_pred CceeEEeeCC--CCcccCCCCCEEEEEEEeEe-cCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeec
Confidence 7889999999 66 67999999999999999 899999999877 8999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEEEeEEe
Q 008348 538 PSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 568 (569)
Q Consensus 538 pelaYG~~G~~~~~IPpnstLvfeVELl~Vk 568 (569)
|.+|||..|.++. ||||++|+|+|||++|.
T Consensus 79 pd~aYG~~G~p~~-IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 79 PDYAYGPRGHPGG-IPPNATLVFDVELLKVN 108 (108)
T ss_pred cccccCCCCCCCc-cCCCcEEEEEEEEEecC
Confidence 9999999998887 99999999999999874
No 4
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.6e-23 Score=203.97 Aligned_cols=110 Identities=58% Similarity=0.990 Sum_probs=105.9
Q ss_pred EeCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeE-EEeCCcchhccHHHHHcCCccCcEEE
Q 008348 455 RTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLK-FHLGGKEVIEGLNVGLEGMHVGEKRR 533 (569)
Q Consensus 455 ~t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~-f~LG~g~lipGleeaL~gMkvGek~~ 533 (569)
+++++||+|+.++.| .|..+..|+.|.|||.+++..+|.+|++++...|+. |++|.+.+|+||+.+|.+|++|++|+
T Consensus 116 ~tl~~Gl~y~D~~vG--~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVG--SGPSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEec--CCCCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 899999999999999 699999999999999999955999999999989999 99999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEe
Q 008348 534 LLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 568 (569)
Q Consensus 534 V~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vk 568 (569)
|+|||+||||..+.+. ||||+||+|+|+|+.|+
T Consensus 194 viIPp~lgYg~~g~~~--IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 194 VIIPPELGYGKKGVPE--IPPNSTLVFDVELLSVK 226 (226)
T ss_pred EEeCccccccccCcCc--CCCCCcEEEEEEEEecC
Confidence 9999999999999996 99999999999999884
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=1.9e-22 Score=198.84 Aligned_cols=120 Identities=36% Similarity=0.595 Sum_probs=111.4
Q ss_pred cCcccccccCCeEeCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHH
Q 008348 443 ENSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNV 521 (569)
Q Consensus 443 ~~~~~~~k~~~~~t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGlee 521 (569)
...+++++..++.++++|++|++++.| .|..|..|+.|.|||++++ .+|++|++++.+ .|+.|.+| .+||||++
T Consensus 86 ~fl~~~~k~~gv~~t~sGl~y~vi~~G--~G~~p~~~d~V~v~Y~g~l-~dG~vfdss~~~g~P~~f~l~--~vipG~~e 160 (206)
T PRK11570 86 KFLEENAKKEGVNSTESGLQFRVLTQG--EGAIPARTDRVRVHYTGKL-IDGTVFDSSVARGEPAEFPVN--GVIPGWIE 160 (206)
T ss_pred HHHHHhhhcCCcEECCCCcEEEEEeCC--CCCCCCCCCEEEEEEEEEE-CCCCEEEeccCCCCCeEEEee--chhhHHHH
Confidence 344678899999999999999999999 6899999999999999999 799999999865 79999995 79999999
Q ss_pred HHcCCccCcEEEEEEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEe
Q 008348 522 GLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVH 568 (569)
Q Consensus 522 aL~gMkvGek~~V~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vk 568 (569)
+|.+|++|++++|+|||.+|||..|.++. |||+++|+|+|+|++|.
T Consensus 161 aL~~M~~G~k~~~~IP~~lAYG~~g~~~~-Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 161 ALTLMPVGSKWELTIPHELAYGERGAGAS-IPPFSTLVFEVELLEIL 206 (206)
T ss_pred HHcCCCCCCEEEEEECHHHcCCCCCCCCC-cCCCCeEEEEEEEEEEC
Confidence 99999999999999999999999998765 99999999999999984
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.88 E-value=5.8e-22 Score=191.17 Aligned_cols=118 Identities=24% Similarity=0.341 Sum_probs=108.6
Q ss_pred ccCCeEeCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccC
Q 008348 450 KLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVG 529 (569)
Q Consensus 450 k~~~~~t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvG 529 (569)
....+.++++|++|.++..+.++|..|..||.|++||++++ .+|.+|++++...|+.|.+|.+++++||++||.+|++|
T Consensus 60 ~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~-~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~G 138 (177)
T TIGR03516 60 SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRA-LDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEG 138 (177)
T ss_pred CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEe-CCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCC
Confidence 34666899999999999875436788999999999999999 89999999987789999999999999999999999999
Q ss_pred cEEEEEEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEeC
Q 008348 530 EKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVHR 569 (569)
Q Consensus 530 ek~~V~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vkk 569 (569)
++++|+|||.+|||..|.++. ||||++|+|+|+|++|++
T Consensus 139 e~~~~~iP~~~AYG~~g~~~~-Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 139 ETATFLFPSHKAYGYYGDQNK-IGPNLPIISTVTLLNIKP 177 (177)
T ss_pred CEEEEEECHHHcCCCCCCCCC-cCcCCcEEEEEEEEEecC
Confidence 999999999999999998776 999999999999999974
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.1e-22 Score=189.33 Aligned_cols=112 Identities=45% Similarity=0.726 Sum_probs=102.6
Q ss_pred eCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHHHcCCccCcEEEE
Q 008348 456 TLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLEGMHVGEKRRL 534 (569)
Q Consensus 456 t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleeaL~gMkvGek~~V 534 (569)
...+++.+.++..-..+...+..||.|.+||++.+ .||++|+|||.+ +|+.|.||.+++|+||+.||.+||+|++|++
T Consensus 65 ~~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~l-eDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl 143 (188)
T KOG0549|consen 65 NPDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSL-EDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL 143 (188)
T ss_pred CCCCceeEEEEECCccccccccCCCEEEEEEEEEe-cCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE
Confidence 34567788877774337788999999999999998 999999999988 6999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEeC
Q 008348 535 LIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVHR 569 (569)
Q Consensus 535 ~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vkk 569 (569)
+|||++|||..|.++. ||++++|+|+|+|+++.+
T Consensus 144 ~IPp~LgYG~~G~~~~-IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPK-IPGDAVLIFDIELVKIER 177 (188)
T ss_pred ecCccccCccCCCCCC-CCCCeeEEEEEEEEEeec
Confidence 9999999999999988 999999999999999864
No 8
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.84 E-value=1.9e-20 Score=191.25 Aligned_cols=119 Identities=34% Similarity=0.567 Sum_probs=110.1
Q ss_pred CcccccccCCeEeCCCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHH
Q 008348 444 NSSAEGKLSLLRTLPNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVG 522 (569)
Q Consensus 444 ~~~~~~k~~~~~t~~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleea 522 (569)
..+++++..++.++++||+|+|+++| .|..|..||.|.|||++++ .+|++|++++.. .|+.|.++ .+||||+++
T Consensus 131 fl~~~~k~~gv~~t~sGl~y~Vi~~G--~G~~p~~gD~V~V~Y~g~l-~dG~vfdss~~~g~p~~f~l~--~vipG~~Ea 205 (269)
T PRK10902 131 YREKFAKEKGVKTTSTGLLYKVEKEG--TGEAPKDSDTVVVNYKGTL-IDGKEFDNSYTRGEPLSFRLD--GVIPGWTEG 205 (269)
T ss_pred HHHHhccCCCcEECCCccEEEEEeCC--CCCCCCCCCEEEEEEEEEe-CCCCEeeccccCCCceEEecC--CcchHHHHH
Confidence 34688999999999999999999999 6899999999999999999 799999999865 78998884 699999999
Q ss_pred HcCCccCcEEEEEEcCCCCCCCCCCCCCCCCCCCeEEEEEEEeEEeC
Q 008348 523 LEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPYSWLEFDVDLVKVHR 569 (569)
Q Consensus 523 L~gMkvGek~~V~VPpelaYG~~G~~~~~IPpnstLvfeVELl~Vkk 569 (569)
|.+|++|+++.|+||+.++||..|.++ ||||++|+|+|+|++|++
T Consensus 206 L~~Mk~Gek~~l~IP~~laYG~~g~~g--Ippns~LvfeVeLl~V~~ 250 (269)
T PRK10902 206 LKNIKKGGKIKLVIPPELAYGKAGVPG--IPANSTLVFDVELLDVKP 250 (269)
T ss_pred HhcCCCCcEEEEEECchhhCCCCCCCC--CCCCCcEEEEEEEEEecc
Confidence 999999999999999999999998764 999999999999999863
No 9
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.75 E-value=6.4e-18 Score=145.12 Aligned_cols=91 Identities=44% Similarity=0.864 Sum_probs=84.7
Q ss_pred ccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCCCCCC
Q 008348 474 KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNI 552 (569)
Q Consensus 474 ~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~~~~I 552 (569)
..|+.||.|+|||++++ .+|++|++++.. .|+.|.+|.+.+++||++||.+|++|++++|+|||.++||..+..+..|
T Consensus 3 ~~~~~gd~V~i~y~~~~-~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i 81 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRL-EDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI 81 (94)
T ss_dssp SSBSTTSEEEEEEEEEE-TTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred ccCCCCCEEEEEEEEEE-CCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence 56999999999999999 599999999654 8999999999999999999999999999999999999999999855449
Q ss_pred CCCCeEEEEEEEe
Q 008348 553 PPYSWLEFDVDLV 565 (569)
Q Consensus 553 PpnstLvfeVELl 565 (569)
|++++|+|+|+|+
T Consensus 82 p~~~~l~f~Iell 94 (94)
T PF00254_consen 82 PPNSTLVFEIELL 94 (94)
T ss_dssp TTTSEEEEEEEEE
T ss_pred CCCCeEEEEEEEC
Confidence 9999999999996
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.8e-13 Score=142.38 Aligned_cols=106 Identities=33% Similarity=0.576 Sum_probs=91.1
Q ss_pred CCceEEEEEeecCCCCccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCC-cchhccHHHHHcCCccCcEEEEEE
Q 008348 458 PNGLVIQKLGTGKPDGKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGG-KEVIEGLNVGLEGMHVGEKRRLLI 536 (569)
Q Consensus 458 ~sGl~y~il~~G~~~G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~-g~lipGleeaL~gMkvGek~~V~V 536 (569)
+.||+.+|++.|.++-..|..|..|.|||.+++ .++ +|+.+. -.|.|.+|. ..+|.||+.||..|++|+.+.|+|
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~-~~~-~f~~~~--~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i 158 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGEL-EDG-VFDQRE--LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTI 158 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEE-CCc-ceeccc--cceEEecCCccchhHHHHHHHHhcCccceEEEEe
Confidence 899999999999522378999999999999999 666 776653 247788877 479999999999999999999999
Q ss_pred cCCCCCCCCC-CCCCCCCCCCeEEEEEEEeEEe
Q 008348 537 PPSLGYGSGG-DDSKNIPPYSWLEFDVDLVKVH 568 (569)
Q Consensus 537 PpelaYG~~G-~~~~~IPpnstLvfeVELl~Vk 568 (569)
+|.+|||..+ .++. ||||++|.|+|+|+++.
T Consensus 159 ~~~YayG~~~~~~p~-IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 159 DPKYAYGEEGGEPPL-IPPNATLLYEVELLDFE 190 (397)
T ss_pred CcccccCCCCCCCCC-CCCCceEEEEEEEEeee
Confidence 9999999554 5555 99999999999999986
No 11
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.44 E-value=6.2e-13 Score=126.12 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=68.0
Q ss_pred ccCCCCCEEEEEEEEEEccCCcEEecCCCC-cCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCC
Q 008348 474 KVAAPGKKISVLYTGKLKENGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGG 546 (569)
Q Consensus 474 ~~~~~GD~VtVhYtg~~~~dG~v~dST~~~-~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G 546 (569)
+.++.|+.|+|||++++ .+|++|++|+.. .|+.|.+|.+++++||++||.+|++|+++.|.|||++|||.+.
T Consensus 3 m~i~~~~~V~v~Y~~~~-~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 3 ESVQSNSAVLVHFTLKL-DDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred cccCCCCEEEEEEEEEe-CCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 56899999999999999 899999999864 8999999999999999999999999999999999999999864
No 12
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.34 E-value=3.9e-12 Score=124.72 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=68.3
Q ss_pred ccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCC
Q 008348 474 KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGG 546 (569)
Q Consensus 474 ~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G 546 (569)
|.+..++.|+|+|++++ .+|.+|++|+...|+.|.+|.++++|+|++||.+|.+|+++.|.|||+.|||.+.
T Consensus 1 MkI~~~~vV~l~Y~l~~-~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 1 MKVAKDLVVSLAYQVRT-EDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred CccCCCCEEEEEEEEEe-CCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 46789999999999999 7999999998779999999999999999999999999999999999999999875
No 13
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.5e-12 Score=120.95 Aligned_cols=72 Identities=35% Similarity=0.538 Sum_probs=68.1
Q ss_pred ccCCCCCEEEEEEEEEEccCCcEEecCCC-CcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCC
Q 008348 474 KVAAPGKKISVLYTGKLKENGQVFDSNLG-STPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGG 546 (569)
Q Consensus 474 ~~~~~GD~VtVhYtg~~~~dG~v~dST~~-~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G 546 (569)
+.+..|+.|.|+|++++ .+|.+|++|.. .+|+.|.+|.++++|||++||.+|.+|++..|.|||+.|||.+.
T Consensus 1 m~i~k~~~V~i~Y~~~~-~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 1 MKIEKGDVVSLHYTLKV-EDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred CcccCCCEEEEEEEEEe-cCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 46889999999999999 78999999987 68999999999999999999999999999999999999999874
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.77 E-value=3.5e-08 Score=106.47 Aligned_cols=87 Identities=21% Similarity=0.434 Sum_probs=77.4
Q ss_pred ccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCCCCCCC
Q 008348 474 KVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIP 553 (569)
Q Consensus 474 ~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~~~~IP 553 (569)
.++..||.|+|+|+++. +|..|+++.. .++.|.+|.+.+++||+++|.||++|+++.|.+|+...|+..+..+
T Consensus 145 ~~~~~gD~V~v~~~~~~--dg~~~~~~~~-~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~~g---- 217 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI--DGEAFEGGKA-ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEELAG---- 217 (408)
T ss_pred cccCCCCEEEEEEEEEE--CCEECcCCCC-CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccCCC----
Confidence 36899999999999987 8999987643 7999999999999999999999999999999999999998766544
Q ss_pred CCCeEEEEEEEeEEeC
Q 008348 554 PYSWLEFDVDLVKVHR 569 (569)
Q Consensus 554 pnstLvfeVELl~Vkk 569 (569)
.++.|.|+|.+|++
T Consensus 218 --k~~~f~v~i~~I~~ 231 (408)
T TIGR00115 218 --KEATFKVTVKEVKE 231 (408)
T ss_pred --CeEEEEEEEEEecc
Confidence 59999999999864
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.69 E-value=8.6e-08 Score=104.36 Aligned_cols=86 Identities=22% Similarity=0.428 Sum_probs=76.7
Q ss_pred cCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCCCCCCCC
Q 008348 475 VAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPP 554 (569)
Q Consensus 475 ~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~~~~IPp 554 (569)
++..||.|+|+|+++. +|..|+++.. .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+.....++
T Consensus 157 ~~~~gD~V~vd~~~~~--~g~~~~~~~~-~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~lagk---- 229 (435)
T PRK01490 157 PAENGDRVTIDFVGSI--DGEEFEGGKA-EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDLAGK---- 229 (435)
T ss_pred cCCCCCEEEEEEEEEE--CCEECcCCCC-CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccCCCC----
Confidence 5899999999999998 8998887643 78999999999999999999999999999999999999987665554
Q ss_pred CCeEEEEEEEeEEeC
Q 008348 555 YSWLEFDVDLVKVHR 569 (569)
Q Consensus 555 nstLvfeVELl~Vkk 569 (569)
++.|.|+|.+|++
T Consensus 230 --~~~f~v~v~~V~~ 242 (435)
T PRK01490 230 --EATFKVTVKEVKE 242 (435)
T ss_pred --eEEEEEEEEEecc
Confidence 9999999999864
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.5e-07 Score=100.47 Aligned_cols=77 Identities=39% Similarity=0.690 Sum_probs=71.3
Q ss_pred CccCCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCCCCCC
Q 008348 473 GKVAAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNI 552 (569)
Q Consensus 473 G~~~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~~~~I 552 (569)
...|..|+.|.+||++++ .+|+.|++|....|+.|.+|.+.+|.||..++..|+. |..+.++. |
T Consensus 6 ~~~p~~g~~v~~hytg~l-~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~pp~-i 69 (397)
T KOG0543|consen 6 TETPMTGDKVEVHYTGTL-LDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSPPK-I 69 (397)
T ss_pred ccCCCCCceeEEEEeEEe-cCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCCCC-C
Confidence 367899999999999999 9999999998778999999999999999999999997 77777887 9
Q ss_pred CCCCeEEEEEEEe
Q 008348 553 PPYSWLEFDVDLV 565 (569)
Q Consensus 553 PpnstLvfeVELl 565 (569)
|++++|.|+|+|+
T Consensus 70 p~~a~l~fe~el~ 82 (397)
T KOG0543|consen 70 PSNATLLFEVELL 82 (397)
T ss_pred CCCcceeeeeccc
Confidence 9999999999985
No 17
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6.6e-07 Score=97.98 Aligned_cols=85 Identities=22% Similarity=0.445 Sum_probs=75.6
Q ss_pred CCCCCEEEEEEEEEEccCCcEEecCCCCcCeEEEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCCCCCCCCC
Q 008348 476 AAPGKKISVLYTGKLKENGQVFDSNLGSTPLKFHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDDSKNIPPY 555 (569)
Q Consensus 476 ~~~GD~VtVhYtg~~~~dG~v~dST~~~~P~~f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~~~~IPpn 555 (569)
++.||.|+|+|.|+. ||..|.+.-. ..+.|.||.+++||||+.+|.||+.|+...|.|.....|......++
T Consensus 158 a~~gD~v~IDf~g~i--Dg~~fegg~a-e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~LaGK----- 229 (441)
T COG0544 158 AENGDRVTIDFEGSV--DGEEFEGGKA-ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEELAGK----- 229 (441)
T ss_pred cccCCEEEEEEEEEE--cCeeccCccc-cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHhCCC-----
Confidence 999999999999987 9998887643 78999999999999999999999999999988888888888766665
Q ss_pred CeEEEEEEEeEEeC
Q 008348 556 SWLEFDVDLVKVHR 569 (569)
Q Consensus 556 stLvfeVELl~Vkk 569 (569)
+..|.|+|..|++
T Consensus 230 -~a~F~V~vkeVk~ 242 (441)
T COG0544 230 -EATFKVKVKEVKK 242 (441)
T ss_pred -ceEEEEEEEEEee
Confidence 8899999999863
No 18
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.00055 Score=69.71 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=66.4
Q ss_pred CCCceEEEEEeecCCCCcc--CCCCCEEEEEEEEEEcc-CCcEEecCCCC-cCeEEEeCCcchhccHHHHHcCCccCcEE
Q 008348 457 LPNGLVIQKLGTGKPDGKV--AAPGKKISVLYTGKLKE-NGQVFDSNLGS-TPLKFHLGGKEVIEGLNVGLEGMHVGEKR 532 (569)
Q Consensus 457 ~~sGl~y~il~~G~~~G~~--~~~GD~VtVhYtg~~~~-dG~v~dST~~~-~P~~f~LG~g~lipGleeaL~gMkvGek~ 532 (569)
.-.|+..+|+..| .|.- ...|..|+|||...... .+++||.|... +|+.+++|..--+|-|+..|..|++++.+
T Consensus 8 ~~~gv~Kril~~G--~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 8 NVEGVKKRILHGG--TGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred cchhhhHhhccCC--CccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3468999999999 4644 56999999999988632 35689988765 89999999888899999999999999998
Q ss_pred EEEEcC
Q 008348 533 RLLIPP 538 (569)
Q Consensus 533 ~V~VPp 538 (569)
.|+|..
T Consensus 86 qF~~d~ 91 (329)
T KOG0545|consen 86 QFWCDT 91 (329)
T ss_pred Hhhhhh
Confidence 877653
No 19
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0023 Score=62.31 Aligned_cols=41 Identities=54% Similarity=0.997 Sum_probs=36.8
Q ss_pred EEeCCcchhccHHHHHcCCccCcEEEEEEcCCCCCCCCCCC
Q 008348 508 FHLGGKEVIEGLNVGLEGMHVGEKRRLLIPPSLGYGSGGDD 548 (569)
Q Consensus 508 f~LG~g~lipGleeaL~gMkvGek~~V~VPpelaYG~~G~~ 548 (569)
|.+|.+.+|||++.+|.+|+.|+++++++||+++||..+..
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~ 41 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG 41 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc
Confidence 46788999999999999999999999999999999965543
No 20
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=91.21 E-value=0.2 Score=54.93 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=4.4
Q ss_pred cCeEEEeC
Q 008348 504 TPLKFHLG 511 (569)
Q Consensus 504 ~P~~f~LG 511 (569)
+++.|+.|
T Consensus 387 gaIDIVkG 394 (458)
T PF10446_consen 387 GAIDIVKG 394 (458)
T ss_pred ccccceec
Confidence 45555555
No 21
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=80.47 E-value=0.85 Score=50.14 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 008348 191 DGESEDMQ 198 (569)
Q Consensus 191 ~~eded~~ 198 (569)
++++|-||
T Consensus 102 ~TDnE~GF 109 (458)
T PF10446_consen 102 ETDNEAGF 109 (458)
T ss_pred cCcccccc
Confidence 34444444
No 22
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=73.03 E-value=3.1 Score=48.25 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=12.2
Q ss_pred cCCCcEEEEEE-cCceEEEe
Q 008348 73 EEADEVVFSVI-GPQSVHLT 91 (569)
Q Consensus 73 ~~~~~V~f~~~-GsgsVHLs 91 (569)
.....++|.|. +..|+||.
T Consensus 71 ~~~~~~~iyViDshRP~~L~ 90 (622)
T PF02724_consen 71 ELDEDVTIYVIDSHRPWNLD 90 (622)
T ss_pred CCCCceEEEEEeCCCCccHh
Confidence 33345777777 77777764
No 23
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=57.67 E-value=6.5 Score=35.43 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=17.4
Q ss_pred CcccccccCCeEeCCCceEEEE
Q 008348 444 NSSAEGKLSLLRTLPNGLVIQK 465 (569)
Q Consensus 444 ~~~~~~k~~~~~t~~sGl~y~i 465 (569)
..+++++..++++++|||+|+|
T Consensus 103 fla~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 103 FLAENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHHHTSTTEEE-TTS-EEEE
T ss_pred HHHHHcCCCCCEECCCCCeeeC
Confidence 3468899999999999999987
No 24
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=48.10 E-value=9.2 Score=39.63 Aligned_cols=11 Identities=0% Similarity=-0.206 Sum_probs=6.4
Q ss_pred CCCceEEEEEe
Q 008348 37 APKKSVVQCNV 47 (569)
Q Consensus 37 ~~e~~~V~v~v 47 (569)
.++.++||+++
T Consensus 56 ~~g~~yLymKt 66 (303)
T KOG3064|consen 56 ENGVLYLYMKT 66 (303)
T ss_pred cCCEEEEEEec
Confidence 34556666664
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=47.03 E-value=12 Score=46.09 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=4.5
Q ss_pred EEeeeeec
Q 008348 89 HLTGYFLG 96 (569)
Q Consensus 89 HLsGY~~~ 96 (569)
-|||...-
T Consensus 1707 llsgnttn 1714 (3015)
T KOG0943|consen 1707 LLSGNTTN 1714 (3015)
T ss_pred hccCCccC
Confidence 46666543
No 26
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=43.26 E-value=17 Score=43.68 Aligned_cols=13 Identities=0% Similarity=-0.100 Sum_probs=6.2
Q ss_pred cCCCCCEEEEEEE
Q 008348 475 VAAPGKKISVLYT 487 (569)
Q Consensus 475 ~~~~GD~VtVhYt 487 (569)
-|..+++|.+..+
T Consensus 537 ~P~l~~Lvllklv 549 (840)
T PF04147_consen 537 WPSLSDLVLLKLV 549 (840)
T ss_pred CCChhHHHHHHHH
Confidence 4555555544333
No 27
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=40.65 E-value=15 Score=42.64 Aligned_cols=15 Identities=13% Similarity=-0.068 Sum_probs=9.0
Q ss_pred EeCCCceEEEEEeec
Q 008348 455 RTLPNGLVIQKLGTG 469 (569)
Q Consensus 455 ~t~~sGl~y~il~~G 469 (569)
+.+-..++|-++..|
T Consensus 494 I~~~~~fr~~~l~dg 508 (622)
T PF02724_consen 494 IKSLGPFRYCVLKDG 508 (622)
T ss_pred cccCCCeEEEEeCCc
Confidence 344445777777666
No 28
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=24 Score=43.72 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.4
Q ss_pred hccCCCCccc
Q 008348 221 VRKSGGTSTD 230 (569)
Q Consensus 221 kr~~~~~~~~ 230 (569)
.|+.+++++.
T Consensus 1937 ~Red~s~Sqg 1946 (3015)
T KOG0943|consen 1937 LREDGSISQG 1946 (3015)
T ss_pred ccccCccchH
Confidence 3444444443
No 29
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=33.31 E-value=1.1e+02 Score=28.99 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.5
Q ss_pred hhccHHHHHcCCccCcEEEEEEcC
Q 008348 515 VIEGLNVGLEGMHVGEKRRLLIPP 538 (569)
Q Consensus 515 lipGleeaL~gMkvGek~~V~VPp 538 (569)
+...|..||.|.++|+.+.|.+|.
T Consensus 122 ~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 122 IESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred cCChHHHHHhCCCCCCEEEEEcCC
Confidence 455688999999999999998764
No 30
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=32.52 E-value=33 Score=38.92 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=8.3
Q ss_pred CceEEEeeeeecc
Q 008348 85 PQSVHLTGYFLGA 97 (569)
Q Consensus 85 sgsVHLsGY~~~~ 97 (569)
++..||+=|-...
T Consensus 54 tgalHlrrvesa~ 66 (694)
T KOG4264|consen 54 TGALHLRRVESAK 66 (694)
T ss_pred cCccchhcccccC
Confidence 5667887775443
No 31
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=31.24 E-value=43 Score=39.68 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=5.3
Q ss_pred eEEEEEEEeC
Q 008348 24 RLHISQATLG 33 (569)
Q Consensus 24 ~LhLsqasLg 33 (569)
.+||-.|.+|
T Consensus 788 iv~~ERV~f~ 797 (960)
T KOG1189|consen 788 IVNLERVQFG 797 (960)
T ss_pred eeeeeeeeec
Confidence 4455555555
No 32
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=24.53 E-value=1.7e+02 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=18.7
Q ss_pred hhccHHHHHcCCccCcEEEEEEcC
Q 008348 515 VIEGLNVGLEGMHVGEKRRLLIPP 538 (569)
Q Consensus 515 lipGleeaL~gMkvGek~~V~VPp 538 (569)
+..-|..||.|.++|+.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 345689999999999999999875
No 33
>PF05475 Chlam_vir: Chlamydia virulence protein PGP3-D; InterPro: IPR008444 This family consists of Chlamydia virulence proteins which are thought to be required for the growth of these bacteria in mammalian cells []. Humans mount a humoral and mucosal immune response to plasmid protein pGP3 from Chlamydia trachomatis infections [, ]. This immune response to pGP3 in humans and animal models of chlamydia-induced disease has potential uses in diagnostic assays and protective immunisation strategies [].
Probab=24.07 E-value=3.9e+02 Score=27.20 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=40.1
Q ss_pred ceEeecCCCCceEEEEEEEeCCCCCCCceEEEEEeCCCccEEEEeeCCCCcc-eeeec--eeecCCCcEEEEEE-c---C
Q 008348 13 PFTHTADDVRGRLHISQATLGIGTAPKKSVVQCNVGDKSPVFLCSLFPEKAE-SCQLN--LEFEEADEVVFSVI-G---P 85 (569)
Q Consensus 13 ~~~~~~~d~~~~LhLsqasLg~~~~~e~~~V~v~v~~~~~v~L~tL~~~~~e-qvsLD--L~F~~~~~V~f~~~-G---s 85 (569)
.|+.+|++.+..|.|+--.+...-.+..+..-|+.|+..|-+|.-=...-.| -|+|. +.=....||+|++. | +
T Consensus 151 ~FtvTP~n~~SmFLisADIIAsRMEG~VvLALVkEGDs~PCaISYGYSsG~PN~cSLrt~v~Nsg~~PvtfSLRvGGmeS 230 (264)
T PF05475_consen 151 KFTVTPDNSGSMFLISADIIASRMEGNVVLALVKEGDSSPCAISYGYSSGIPNVCSLRTCVTNSGTTPVTFSLRVGGMES 230 (264)
T ss_pred EEEeccCCCCcEEEEEhhhhhhhccCcEEEEEEecCCCCCcEEEecccCCCCceeeeEEEeecCCCCceEEEEEeccccc
Confidence 4777888877777776544442222222223334455554333222111122 23332 22233457899888 4 7
Q ss_pred ceEEEee
Q 008348 86 QSVHLTG 92 (569)
Q Consensus 86 gsVHLsG 92 (569)
|.|.+--
T Consensus 231 GVVWVNA 237 (264)
T PF05475_consen 231 GVVWVNA 237 (264)
T ss_pred ceEEEEc
Confidence 7777653
No 34
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=24.04 E-value=58 Score=42.03 Aligned_cols=7 Identities=43% Similarity=0.415 Sum_probs=3.1
Q ss_pred hhhhccc
Q 008348 281 KKVQSKE 287 (569)
Q Consensus 281 kk~~~k~ 287 (569)
++.+.|+
T Consensus 328 ~~~klke 334 (2849)
T PTZ00415 328 KEEKLKE 334 (2849)
T ss_pred hhhhHHH
Confidence 3444444
No 35
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=22.92 E-value=2.1e+02 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=20.4
Q ss_pred hhccHHHHHcCCccCcEEEEEEcC
Q 008348 515 VIEGLNVGLEGMHVGEKRRLLIPP 538 (569)
Q Consensus 515 lipGleeaL~gMkvGek~~V~VPp 538 (569)
+...|..||.|.++|+.+.+.+|.
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~ 142 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPA 142 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCC
Confidence 445688999999999999998765
No 36
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=21.21 E-value=58 Score=39.55 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=8.9
Q ss_pred cchhhcCCCCCC
Q 008348 302 TDKIIQNLPVPN 313 (569)
Q Consensus 302 ~~~~~~~~~~~~ 313 (569)
|+....||++++
T Consensus 226 Ai~gv~niy~~~ 237 (1024)
T KOG1999|consen 226 AIEGVRNIYANR 237 (1024)
T ss_pred HHhhhhhheecc
Confidence 677778888775
Done!