BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008350
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QRV|A Chain A, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|D Chain D, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|E Chain E, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|H Chain H, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
Length = 295
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 14/117 (11%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISE--VNRNIVRSWWEQTNQKGTLIDFAD 502
I VLSLF GI + L LG+++ ++ ++ E + +VR +G ++ D
Sbjct: 17 IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-------HQGKIMYVGD 69
Query: 503 VQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRIL 559
V+ + I++ +G FDLVIGGSPCN+L+ N +R GL LF++++R+L
Sbjct: 70 VRSVTQKHIQE----WGPFDLVIGGSPCNDLSIVN-PARKGLYEGTGRLFFEFYRLL 121
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 42/210 (20%)
Query: 237 IVHRSLPEAAAGPPYFY-YENVALAPKGVWDT--ISRFLYDVEPEFVDSKYFCAAARKRG 293
++H + P+ P+F+ +ENV GV D ISRFL + P +D+K AA R R
Sbjct: 120 LLHDARPKEGDDRPFFWLFENVV--AMGVSDKRDISRFL-ESNPVMIDAKEVSAAHRARY 176
Query: 294 YVHNLPIKNRHHLVPLPPQNIYEALPLSRKWWPSWDTRSHLNCLQTCIASAKLTE--RIR 351
+ NLP NR P T + LQ C+ ++ + ++R
Sbjct: 177 FWGNLPGMNR----------------------PLASTVNDKLELQECLEHGRIAKFSKVR 214
Query: 352 KALEECDGEPEPPHHVQKFVMDECRKWNLVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGG 411
+ + M+E K +++W E+E + GFP ++T
Sbjct: 215 TITTRSNSIKQGKDQHFPVFMNE--KEDILWC----------TEMERVFGFPVHYTDVSN 262
Query: 412 ISRTDRYKSLGNSFQVDTVAYHLSVLKEMY 441
+SR R + LG S+ V + + + LKE +
Sbjct: 263 MSRLARQRLLGRSWSVPVIRHLFAPLKEYF 292
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 17/115 (14%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+N++SLFSG GG ++ + G R+ + +E +++I +++ ++N LI D+
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGFRI-----ICANEYDKSIWKTY--ESNHSAKLIK-GDIS 52
Query: 505 QLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRIL 559
++ ++ F D +IGG PC + S S G++ LFY+Y RIL
Sbjct: 53 KISSDE-------FPKCDGIIGGPPCQSW--SEGGSLRGIDDPRGKLFYEYIRIL 98
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+N++SLFSG GG ++ + G R+ + +E +++I +++ ++N LI D+
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGFRI-----ICANEYDKSIWKTY--ESNHSAKLIK-GDIS 52
Query: 505 QLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRIL 559
++ ++ F D +IGG P + S S G++ LFY+Y RIL
Sbjct: 53 KISSDE-------FPKCDGIIGGPPSQSW--SEGGSLRGIDDPRGKLFYEYIRIL 98
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+NV+ LFSG+GG + R G +K V +D +N + + N +L DV
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAI-------NFPRSLHVQEDVS 55
Query: 505 QLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRIL 559
L+A I+ D +IGG PC + + + D + L+ ++R++
Sbjct: 56 LLNAEIIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPD---DSRNQLYMHFYRLV 107
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 387 KLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKE 439
KL P EV M++ FPK++ IS Y+ LGNS V ++ L +L E
Sbjct: 281 KLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILFE 333
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 447 VLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506
+L L+SGIGG A G+ + V +VDI+ V ++ + + +TN L++ ++QQL
Sbjct: 6 ILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETN----LLN-RNIQQL 60
Query: 507 DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNM 565
I++ D ++ PC + ++ D + + +S Y ILD + N+
Sbjct: 61 TPQVIKKW-----NVDTILMSPPCQPFTRNGKYLDDN-DPRTNSFLY-LIGILDQLDNV 112
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ L +FSG GG H+ G+ + + ++++ + R N GT + D
Sbjct: 852 LRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFR-----LNNPGTTVFTEDCN 905
Query: 505 QL--------DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSL----- 551
L N + Q + G +++ GG PC +G NR + ++SL
Sbjct: 906 VLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 965
Query: 552 -FYDYFR----ILDLVKNMM 566
+ DY+R +L+ V+N +
Sbjct: 966 SYCDYYRPRFFLLENVRNFV 985
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ L +FSG GG H+ G+ + + ++++ + R N GT + D
Sbjct: 494 LRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFR-----LNNPGTTVFTEDCN 547
Query: 505 QL--------DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSL----- 551
L N + Q + G +++ GG PC +G NR + ++SL
Sbjct: 548 VLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 607
Query: 552 -FYDYFR----ILDLVKNMM 566
+ DY+R +L+ V+N +
Sbjct: 608 SYCDYYRPRFFLLENVRNFV 627
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ L +FSG GG H+ G+ + + ++++ + R N GT + D
Sbjct: 413 LRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFR-----LNNPGTTVFTEDCN 466
Query: 505 QL--------DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSL----- 551
L N + Q + G +++ GG PC +G NR + ++SL
Sbjct: 467 VLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 526
Query: 552 -FYDYFR----ILDLVKNMM 566
+ DY+R +L+ V+N +
Sbjct: 527 SYCDYYRPRFFLLENVRNFV 546
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 387 KLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKE 439
KL P E+ LLGFP I+ RY+ LGNS V VA + +L E
Sbjct: 291 KLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 343
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ VL L+SG+GG AL + + V ++D++ V + + + T I+ ++
Sbjct: 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE 62
Query: 505 QLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKN 564
+ D R+ FD+++ PC R D + + +S + ILD++
Sbjct: 63 EFD--RL--------SFDMILMSPPCQPFTRIGRQG-DMTDSRTNS----FLHILDILPR 107
Query: 565 MMQ 567
+ +
Sbjct: 108 LQK 110
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G PC A S + + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPCQ--AFSIQGKQKGFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ L +FSG GG H+ G+ + ++++ + R N G+ + D
Sbjct: 541 LRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFR-----LNNPGSTVFTEDCN 594
Query: 505 QL--------DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSL----- 551
L N Q + G +++ GG PC +G NR + ++SL
Sbjct: 595 ILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 654
Query: 552 -FYDYFR----ILDLVKNMM 566
+ DY+R +L+ V+N +
Sbjct: 655 SYCDYYRPRFFLLENVRNFV 674
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504
+ L +FSG GG H+ G+ + ++++ + R N G+ + D
Sbjct: 495 LRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFR-----LNNPGSTVFTEDCN 548
Query: 505 QL--------DANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSL----- 551
L N Q + G +++ GG PC +G NR + ++SL
Sbjct: 549 ILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFL 608
Query: 552 -FYDYFR----ILDLVKNMM 566
+ DY+R +L+ V+N +
Sbjct: 609 SYCDYYRPRFFLLENVRNFV 628
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT 496
+K+ G+ + LF+G+GG +AL G + + W++ Q+
Sbjct: 4 IKDKQLTGLRFIDLFAGLGGFRLALESCGAEC--------------VYSNEWDKYAQEVY 49
Query: 497 LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYF 556
++F + + D ++ + D++ G P + S + G E +LF+D
Sbjct: 50 EMNFGEKPEGDITQVNE--KTIPDHDILCAGFPAQAFSISGKQK--GFEDSRGTLFFDIA 105
Query: 557 RIL 559
RI+
Sbjct: 106 RIV 108
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMK-NVVSVDISEVNRNIVRSWWEQTNQKG 495
L M +NV+ FSGIGG + R + + + DI+E+ I +++ Q
Sbjct: 3 LGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVK 62
Query: 496 TL--IDFADVQQLDAN 509
L I ++ L+ N
Sbjct: 63 NLDSISIKQIESLNCN 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,779,343
Number of Sequences: 62578
Number of extensions: 764458
Number of successful extensions: 1673
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 32
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)