Query 008350
Match_columns 569
No_of_seqs 316 out of 1169
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:42:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 99.9 5.8E-24 1.3E-28 218.6 8.5 106 445-567 1-106 (335)
2 COG0270 Dcm Site-specific DNA 99.9 1.1E-23 2.4E-28 220.9 8.9 111 443-567 2-112 (328)
3 PRK10458 DNA cytosine methylas 99.9 9.5E-22 2.1E-26 214.4 11.3 121 443-567 87-223 (467)
4 TIGR00675 dcm DNA-methyltransf 99.9 8.7E-22 1.9E-26 205.6 8.6 103 447-566 1-103 (315)
5 cd00315 Cyt_C5_DNA_methylase C 99.8 1.8E-21 4E-26 199.6 8.7 107 445-567 1-107 (275)
6 KOG0919 C-5 cytosine-specific 99.3 3.4E-12 7.3E-17 126.6 6.9 109 443-563 2-110 (338)
7 COG2265 TrmA SAM-dependent met 99.2 2.1E-11 4.6E-16 132.6 6.3 206 307-529 156-371 (432)
8 TIGR02085 meth_trns_rumB 23S r 99.1 2.5E-10 5.3E-15 122.4 10.3 207 307-529 87-309 (374)
9 PRK03522 rumB 23S rRNA methylu 99.0 5.1E-10 1.1E-14 117.1 9.2 210 307-532 27-252 (315)
10 TIGR00479 rumA 23S rRNA (uraci 99.0 7.5E-10 1.6E-14 120.5 10.5 212 307-532 147-374 (431)
11 PF05958 tRNA_U5-meth_tr: tRNA 98.9 3.4E-10 7.4E-15 120.4 3.1 205 307-531 68-289 (352)
12 PRK05031 tRNA (uracil-5-)-meth 98.7 1.2E-08 2.6E-13 109.0 6.5 202 307-530 77-298 (362)
13 PRK13168 rumA 23S rRNA m(5)U19 98.6 1.4E-07 3.1E-12 103.3 8.9 203 307-533 168-380 (443)
14 cd00315 Cyt_C5_DNA_methylase C 98.5 1.4E-07 3.1E-12 97.1 4.9 150 247-430 102-266 (275)
15 PF02475 Met_10: Met-10+ like- 98.3 3.3E-06 7.1E-11 83.4 10.6 127 393-530 52-179 (200)
16 TIGR02143 trmA_only tRNA (urac 98.3 2.2E-06 4.8E-11 91.4 8.3 205 307-530 68-289 (353)
17 PF13659 Methyltransf_26: Meth 98.1 5.2E-06 1.1E-10 73.1 6.6 82 444-533 1-83 (117)
18 KOG2187 tRNA uracil-5-methyltr 98.1 3.5E-06 7.7E-11 92.2 5.7 108 394-507 333-444 (534)
19 COG2520 Predicted methyltransf 98.0 2.1E-05 4.5E-10 83.4 8.7 126 394-530 140-266 (341)
20 TIGR03704 PrmC_rel_meth putati 98.0 1.5E-05 3.2E-10 81.2 7.4 82 444-535 87-168 (251)
21 PF03602 Cons_hypoth95: Conser 98.0 1.6E-05 3.5E-10 77.4 7.2 82 443-530 42-124 (183)
22 PF09445 Methyltransf_15: RNA 97.9 1.1E-05 2.3E-10 77.3 4.9 83 446-537 2-86 (163)
23 PRK10909 rsmD 16S rRNA m(2)G96 97.9 1.4E-05 3E-10 78.9 5.8 77 444-529 54-130 (199)
24 TIGR00095 RNA methyltransferas 97.9 4.3E-05 9.4E-10 74.7 8.1 82 444-531 50-132 (189)
25 TIGR00446 nop2p NOL1/NOP2/sun 97.9 3.8E-05 8.2E-10 78.7 8.0 86 443-536 71-156 (264)
26 PRK15128 23S rRNA m(5)C1962 me 97.8 3.3E-05 7.2E-10 83.8 7.4 82 443-530 220-303 (396)
27 COG2263 Predicted RNA methylas 97.7 6.8E-05 1.5E-09 73.2 6.8 73 444-530 46-118 (198)
28 PRK11783 rlmL 23S rRNA m(2)G24 97.6 7.8E-05 1.7E-09 86.5 6.6 82 443-533 538-621 (702)
29 PRK14904 16S rRNA methyltransf 97.6 0.00013 2.7E-09 80.3 7.7 87 443-538 250-336 (445)
30 PF05175 MTS: Methyltransferas 97.6 0.00019 4.1E-09 68.6 7.9 77 443-529 31-107 (170)
31 TIGR01177 conserved hypothetic 97.6 0.00026 5.6E-09 74.8 9.7 82 442-534 181-262 (329)
32 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00011 2.4E-09 79.4 6.9 76 444-529 58-134 (382)
33 PRK14901 16S rRNA methyltransf 97.5 0.00021 4.5E-09 78.4 7.8 91 442-536 251-341 (434)
34 PF13847 Methyltransf_31: Meth 97.5 0.00025 5.4E-09 66.0 6.9 81 443-531 3-84 (152)
35 PRK14903 16S rRNA methyltransf 97.5 0.00026 5.7E-09 77.6 8.2 88 442-537 236-324 (431)
36 PF00145 DNA_methylase: C-5 cy 97.5 4.6E-05 9.9E-10 78.5 1.6 52 246-297 100-160 (335)
37 PRK14902 16S rRNA methyltransf 97.4 0.00029 6.2E-09 77.5 7.7 86 443-536 250-336 (444)
38 PRK10901 16S rRNA methyltransf 97.4 0.00041 8.9E-09 75.9 8.1 85 443-535 244-328 (427)
39 COG0742 N6-adenine-specific me 97.4 0.00046 1E-08 67.5 7.3 82 443-531 43-125 (187)
40 PHA03412 putative methyltransf 97.4 0.00043 9.2E-09 70.2 7.1 100 418-534 27-128 (241)
41 PF10672 Methyltrans_SAM: S-ad 97.3 0.00036 7.9E-09 72.6 6.3 83 443-534 123-207 (286)
42 PF00627 UBA: UBA/TS-N domain; 97.3 0.00042 9.1E-09 50.0 4.3 35 48-83 3-37 (37)
43 COG2890 HemK Methylase of poly 97.2 0.0011 2.3E-08 68.9 8.6 78 446-534 113-190 (280)
44 PHA03411 putative methyltransf 97.2 0.00068 1.5E-08 70.2 6.7 97 421-535 45-141 (279)
45 TIGR00675 dcm DNA-methyltransf 97.2 0.00027 5.9E-09 74.3 3.9 44 383-428 263-306 (315)
46 TIGR03533 L3_gln_methyl protei 97.2 0.00086 1.9E-08 69.6 7.5 81 444-534 122-203 (284)
47 TIGR00308 TRM1 tRNA(guanine-26 97.2 0.00046 1E-08 74.4 5.6 77 444-529 45-123 (374)
48 PRK10458 DNA cytosine methylas 97.2 0.00027 5.9E-09 78.2 3.6 45 386-430 399-445 (467)
49 COG0270 Dcm Site-specific DNA 97.1 0.00025 5.5E-09 75.0 2.9 174 246-430 106-313 (328)
50 PRK14967 putative methyltransf 97.1 0.0016 3.6E-08 64.7 8.2 79 442-532 35-113 (223)
51 TIGR03534 RF_mod_PrmC protein- 97.1 0.002 4.3E-08 64.3 8.6 83 443-535 87-169 (251)
52 cd00194 UBA Ubiquitin Associat 97.1 0.001 2.2E-08 48.0 4.8 36 48-84 2-37 (38)
53 TIGR00537 hemK_rel_arch HemK-r 97.1 0.0017 3.6E-08 62.3 7.6 77 444-534 20-96 (179)
54 KOG2561 Adaptor protein NUB1, 97.0 0.0028 6.1E-08 68.5 9.6 126 3-162 308-457 (568)
55 smart00650 rADc Ribosomal RNA 97.0 0.0014 3.1E-08 62.3 6.8 76 443-531 13-88 (169)
56 PRK11805 N5-glutamine S-adenos 97.0 0.0012 2.7E-08 69.3 6.8 80 445-534 135-215 (307)
57 smart00165 UBA Ubiquitin assoc 97.0 0.0011 2.3E-08 47.6 4.4 35 49-84 3-37 (37)
58 TIGR00536 hemK_fam HemK family 97.0 0.0021 4.6E-08 66.5 8.4 81 445-535 116-197 (284)
59 TIGR00563 rsmB ribosomal RNA s 97.0 0.0019 4.2E-08 70.6 8.3 88 443-538 238-327 (426)
60 COG1092 Predicted SAM-dependen 97.0 0.0011 2.5E-08 71.7 6.3 102 444-561 218-321 (393)
61 KOG3420 Predicted RNA methylas 96.9 0.0013 2.9E-08 61.9 4.9 76 444-530 49-124 (185)
62 PRK14966 unknown domain/N5-glu 96.9 0.0028 6E-08 69.3 7.9 80 442-530 250-329 (423)
63 COG4123 Predicted O-methyltran 96.8 0.0029 6.4E-08 64.5 7.3 83 442-531 43-126 (248)
64 PRK11933 yebU rRNA (cytosine-C 96.7 0.0029 6.2E-08 70.3 7.0 89 442-537 112-200 (470)
65 KOG2730 Methylase [General fun 96.7 0.0028 6.1E-08 63.4 6.0 129 430-566 81-210 (263)
66 TIGR00080 pimt protein-L-isoas 96.7 0.0043 9.2E-08 61.4 7.4 83 442-532 76-158 (215)
67 PRK09328 N5-glutamine S-adenos 96.7 0.0045 9.8E-08 62.9 7.7 83 443-535 108-190 (275)
68 PF00627 UBA: UBA/TS-N domain; 96.5 0.0043 9.3E-08 44.8 4.4 35 134-170 2-36 (37)
69 PF09288 UBA_3: Fungal ubiquit 96.5 0.0025 5.5E-08 50.2 3.4 37 48-84 10-54 (55)
70 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.0068 1.5E-07 63.0 7.5 91 442-538 84-174 (283)
71 PRK14896 ksgA 16S ribosomal RN 96.5 0.0081 1.8E-07 61.4 7.9 74 443-531 29-102 (258)
72 smart00165 UBA Ubiquitin assoc 96.5 0.0048 1E-07 44.2 4.3 35 135-171 2-36 (37)
73 cd02440 AdoMet_MTases S-adenos 96.4 0.0077 1.7E-07 49.4 5.9 79 446-533 1-79 (107)
74 PRK14968 putative methyltransf 96.3 0.013 2.7E-07 55.7 7.4 78 443-532 23-102 (188)
75 PF01170 UPF0020: Putative RNA 96.2 0.008 1.7E-07 58.2 5.9 107 442-564 27-143 (179)
76 PF12847 Methyltransf_18: Meth 96.2 0.012 2.7E-07 51.0 6.5 74 444-528 2-78 (112)
77 TIGR02469 CbiT precorrin-6Y C5 96.2 0.016 3.4E-07 50.9 7.2 77 443-527 19-95 (124)
78 COG0144 Sun tRNA and rRNA cyto 96.2 0.013 2.9E-07 62.8 7.7 91 443-538 156-247 (355)
79 PF09288 UBA_3: Fungal ubiquit 96.1 0.0025 5.5E-08 50.2 1.3 36 1-36 12-55 (55)
80 TIGR02752 MenG_heptapren 2-hep 96.1 0.014 3.1E-07 57.7 7.0 81 443-532 45-126 (231)
81 PRK00121 trmB tRNA (guanine-N( 96.1 0.015 3.1E-07 57.3 7.0 82 443-531 40-122 (202)
82 PTZ00338 dimethyladenosine tra 96.1 0.018 3.8E-07 60.4 7.9 78 442-532 35-113 (294)
83 COG2264 PrmA Ribosomal protein 96.1 0.018 3.9E-07 60.4 7.9 57 434-492 153-209 (300)
84 TIGR00138 gidB 16S rRNA methyl 96.1 0.011 2.4E-07 57.4 6.0 74 444-527 43-116 (181)
85 PRK15001 SAM-dependent 23S rib 96.1 0.024 5.3E-07 61.4 9.0 76 445-530 230-308 (378)
86 cd00194 UBA Ubiquitin Associat 96.0 0.013 2.9E-07 42.1 4.8 36 135-172 2-37 (38)
87 PRK08287 cobalt-precorrin-6Y C 96.0 0.018 3.8E-07 55.6 7.1 75 442-527 30-104 (187)
88 TIGR00091 tRNA (guanine-N(7)-) 96.0 0.017 3.7E-07 56.4 7.1 82 444-531 17-98 (194)
89 TIGR02987 met_A_Alw26 type II 96.0 0.01 2.2E-07 66.6 6.3 87 443-533 31-125 (524)
90 PRK00377 cbiT cobalt-precorrin 95.9 0.018 3.8E-07 56.3 6.5 80 441-528 38-119 (198)
91 TIGR00755 ksgA dimethyladenosi 95.9 0.025 5.4E-07 57.5 7.8 76 442-529 28-103 (253)
92 COG2227 UbiG 2-polyprenyl-3-me 95.9 0.013 2.9E-07 59.4 5.6 46 443-491 59-104 (243)
93 PRK00274 ksgA 16S ribosomal RN 95.8 0.021 4.5E-07 58.9 7.1 75 442-530 41-115 (272)
94 PRK09489 rsmC 16S ribosomal RN 95.8 0.02 4.3E-07 61.2 7.1 74 445-530 198-271 (342)
95 PRK00107 gidB 16S rRNA methylt 95.8 0.026 5.6E-07 55.3 7.2 77 441-527 43-119 (187)
96 PF06325 PrmA: Ribosomal prote 95.8 0.023 4.9E-07 59.7 7.2 53 441-495 159-211 (295)
97 KOG2561 Adaptor protein NUB1, 95.8 0.072 1.6E-06 58.0 11.0 83 3-87 380-468 (568)
98 PRK01544 bifunctional N5-gluta 95.7 0.021 4.6E-07 64.0 7.2 81 444-534 139-220 (506)
99 PRK00312 pcm protein-L-isoaspa 95.7 0.029 6.3E-07 55.2 7.2 80 442-532 77-156 (212)
100 PRK11207 tellurite resistance 95.7 0.034 7.3E-07 54.5 7.5 60 444-506 31-90 (197)
101 PF02384 N6_Mtase: N-6 DNA Met 95.7 0.018 4E-07 59.9 5.9 107 419-533 23-138 (311)
102 PRK07402 precorrin-6B methylas 95.4 0.027 5.8E-07 54.8 5.8 62 443-505 40-101 (196)
103 PF13649 Methyltransf_25: Meth 95.4 0.036 7.8E-07 47.8 5.8 70 447-526 1-73 (101)
104 KOG0944 Ubiquitin-specific pro 95.4 0.028 6E-07 63.7 6.3 85 1-86 574-673 (763)
105 TIGR02021 BchM-ChlM magnesium 95.4 0.045 9.8E-07 54.0 7.2 62 442-506 54-116 (219)
106 KOG0944 Ubiquitin-specific pro 95.3 0.074 1.6E-06 60.5 9.3 104 46-174 570-673 (763)
107 TIGR00406 prmA ribosomal prote 95.2 0.052 1.1E-06 56.4 7.5 78 442-531 158-236 (288)
108 PRK00117 recX recombination re 95.2 0.2 4.3E-06 47.3 10.7 121 3-161 33-156 (157)
109 PF01209 Ubie_methyltran: ubiE 95.2 0.044 9.5E-07 55.5 6.5 77 443-528 47-124 (233)
110 PRK13944 protein-L-isoaspartat 95.2 0.064 1.4E-06 52.8 7.5 81 443-531 72-153 (205)
111 COG5207 UBP14 Isopeptidase T [ 95.1 0.081 1.8E-06 58.4 8.7 91 46-161 557-648 (749)
112 PRK13942 protein-L-isoaspartat 95.1 0.061 1.3E-06 53.4 7.2 78 442-527 75-152 (212)
113 COG5207 UBP14 Isopeptidase T [ 95.0 0.044 9.5E-07 60.5 6.4 81 1-82 561-655 (749)
114 PLN02672 methionine S-methyltr 94.9 0.05 1.1E-06 65.9 7.2 79 445-531 120-214 (1082)
115 COG2813 RsmC 16S RNA G1207 met 94.9 0.12 2.5E-06 54.3 8.9 103 415-530 128-234 (300)
116 PLN02396 hexaprenyldihydroxybe 94.9 0.055 1.2E-06 57.4 6.7 61 443-506 131-192 (322)
117 KOG1227 Putative methyltransfe 94.7 0.019 4.2E-07 59.8 2.4 49 442-492 193-242 (351)
118 COG1041 Predicted DNA modifica 94.6 0.089 1.9E-06 56.2 7.3 102 442-561 196-298 (347)
119 PRK11036 putative S-adenosyl-L 94.5 0.082 1.8E-06 53.6 6.7 78 442-529 43-121 (255)
120 PLN02585 magnesium protoporphy 94.4 0.099 2.2E-06 55.3 7.1 44 443-489 144-187 (315)
121 PRK00517 prmA ribosomal protei 94.4 0.12 2.6E-06 52.5 7.5 50 441-492 117-166 (250)
122 PRK07580 Mg-protoporphyrin IX 94.4 0.12 2.6E-06 50.8 7.3 57 443-502 63-120 (230)
123 KOG2904 Predicted methyltransf 94.4 0.083 1.8E-06 54.7 6.1 82 443-531 148-233 (328)
124 COG2226 UbiE Methylase involve 94.3 0.12 2.6E-06 52.7 7.2 77 443-528 51-127 (238)
125 PRK13943 protein-L-isoaspartat 94.3 0.11 2.4E-06 55.2 7.2 78 442-527 79-156 (322)
126 PRK11783 rlmL 23S rRNA m(2)G24 94.2 0.17 3.6E-06 59.2 9.1 108 443-564 190-339 (702)
127 PLN02244 tocopherol O-methyltr 94.2 0.11 2.4E-06 55.2 7.0 62 443-507 118-181 (340)
128 PRK00811 spermidine synthase; 94.1 0.088 1.9E-06 54.7 6.0 78 442-528 75-158 (283)
129 PRK10742 putative methyltransf 94.0 0.21 4.5E-06 51.3 8.1 84 445-532 90-176 (250)
130 PRK12335 tellurite resistance 93.9 0.14 3E-06 53.1 6.8 57 445-505 122-178 (287)
131 TIGR00477 tehB tellurite resis 93.7 0.19 4.2E-06 49.0 7.2 57 444-504 31-87 (195)
132 PTZ00098 phosphoethanolamine N 93.6 0.11 2.3E-06 53.3 5.4 60 442-506 51-111 (263)
133 PRK11727 23S rRNA mA1618 methy 93.5 0.23 5.1E-06 52.7 7.8 81 443-530 114-199 (321)
134 cd04708 BAH_plantDCM_II BAH, o 93.5 0.029 6.3E-07 55.6 0.9 64 293-360 45-115 (202)
135 TIGR00601 rad23 UV excision re 93.3 0.76 1.6E-05 50.0 11.4 34 2-36 160-193 (378)
136 PRK11188 rrmJ 23S rRNA methylt 93.1 0.18 3.9E-06 50.0 6.0 75 442-528 50-125 (209)
137 PF03848 TehB: Tellurite resis 93.1 0.31 6.8E-06 48.1 7.5 60 443-506 30-89 (192)
138 COG0116 Predicted N6-adenine-s 93.1 0.35 7.5E-06 52.4 8.4 120 429-565 178-336 (381)
139 PLN02781 Probable caffeoyl-CoA 93.0 0.31 6.7E-06 49.3 7.6 81 443-528 68-152 (234)
140 COG2521 Predicted archaeal met 93.0 0.03 6.4E-07 56.8 0.2 103 441-560 132-236 (287)
141 PLN02233 ubiquinone biosynthes 93.0 0.26 5.7E-06 50.5 7.0 78 442-528 72-153 (261)
142 PRK14135 recX recombination re 92.9 1.6 3.4E-05 44.7 12.6 125 3-164 79-208 (263)
143 PRK01683 trans-aconitate 2-met 92.7 0.28 6.2E-06 49.5 6.8 73 443-530 31-103 (258)
144 PF01135 PCMT: Protein-L-isoas 92.6 0.4 8.6E-06 47.9 7.5 84 441-532 70-153 (209)
145 PRK10258 biotin biosynthesis p 92.5 0.27 5.8E-06 49.5 6.4 69 444-528 43-111 (251)
146 PRK04266 fibrillarin; Provisio 92.5 0.46 9.9E-06 47.9 7.9 78 442-528 71-149 (226)
147 TIGR03587 Pse_Me-ase pseudamin 92.4 0.4 8.7E-06 47.4 7.3 58 441-505 41-99 (204)
148 PRK11873 arsM arsenite S-adeno 92.4 0.32 7E-06 49.6 6.8 77 442-527 76-153 (272)
149 TIGR03840 TMPT_Se_Te thiopurin 92.4 0.23 5E-06 49.6 5.5 41 442-485 33-73 (213)
150 PF02005 TRM: N2,N2-dimethylgu 92.3 0.17 3.6E-06 55.0 4.8 81 439-528 45-129 (377)
151 PRK14121 tRNA (guanine-N(7)-)- 92.0 0.27 5.9E-06 53.5 6.0 82 443-531 122-203 (390)
152 KOG1270 Methyltransferases [Co 92.0 0.19 4.2E-06 51.7 4.6 41 444-487 90-130 (282)
153 PRK13255 thiopurine S-methyltr 91.9 0.32 6.8E-06 48.8 5.9 41 442-485 36-76 (218)
154 TIGR02072 BioC biotin biosynth 91.8 0.31 6.8E-06 47.7 5.7 76 443-531 34-109 (240)
155 TIGR01934 MenG_MenH_UbiE ubiqu 91.8 0.43 9.4E-06 46.3 6.6 74 443-526 39-112 (223)
156 TIGR01983 UbiG ubiquinone bios 91.6 0.39 8.5E-06 47.1 6.1 61 443-506 45-105 (224)
157 PRK08317 hypothetical protein; 91.4 0.53 1.1E-05 45.9 6.9 64 442-506 18-81 (241)
158 COG2242 CobL Precorrin-6B meth 91.3 0.63 1.4E-05 45.8 7.1 74 432-508 25-98 (187)
159 PRK06202 hypothetical protein; 91.3 0.49 1.1E-05 47.1 6.6 76 442-529 59-138 (232)
160 PRK03612 spermidine synthase; 91.2 0.25 5.5E-06 55.7 5.0 82 442-531 296-384 (521)
161 PRK00216 ubiE ubiquinone/menaq 91.2 0.47 1E-05 46.6 6.3 76 443-526 51-127 (239)
162 TIGR02081 metW methionine bios 91.2 0.3 6.4E-06 47.4 4.8 59 438-505 8-66 (194)
163 PRK14135 recX recombination re 91.1 1.5 3.2E-05 44.9 10.1 123 3-161 130-262 (263)
164 TIGR00601 rad23 UV excision re 91.1 0.27 5.8E-06 53.4 4.7 44 44-88 153-196 (378)
165 PRK05785 hypothetical protein; 91.0 0.61 1.3E-05 46.8 7.0 70 443-530 51-120 (226)
166 TIGR00438 rrmJ cell division p 91.0 0.46 1E-05 45.8 5.9 76 442-529 31-107 (188)
167 PF00398 RrnaAD: Ribosomal RNA 90.9 0.33 7.2E-06 49.7 5.0 77 443-529 30-106 (262)
168 TIGR00417 speE spermidine synt 90.8 0.41 8.8E-06 49.3 5.6 80 442-529 71-154 (270)
169 COG3897 Predicted methyltransf 90.8 0.19 4.1E-06 49.9 2.9 80 443-536 79-158 (218)
170 PRK05134 bifunctional 3-demeth 90.6 0.52 1.1E-05 46.7 6.0 75 443-528 48-122 (233)
171 PF07499 RuvA_C: RuvA, C-termi 90.6 0.47 1E-05 36.1 4.4 34 135-168 4-39 (47)
172 PRK15451 tRNA cmo(5)U34 methyl 90.5 0.65 1.4E-05 47.0 6.7 67 441-507 54-122 (247)
173 KOG1122 tRNA and rRNA cytosine 90.4 0.37 8E-06 52.6 5.0 86 442-537 240-329 (460)
174 PF01555 N6_N4_Mtase: DNA meth 90.4 0.43 9.3E-06 46.2 5.1 41 442-485 190-230 (231)
175 TIGR00478 tly hemolysin TlyA f 90.3 0.59 1.3E-05 47.3 6.1 38 443-482 75-112 (228)
176 PF08241 Methyltransf_11: Meth 90.3 0.68 1.5E-05 38.1 5.5 69 448-529 1-69 (95)
177 PF05185 PRMT5: PRMT5 arginine 90.1 0.59 1.3E-05 51.9 6.5 73 444-525 187-263 (448)
178 PF05401 NodS: Nodulation prot 89.9 0.62 1.4E-05 46.3 5.7 71 444-528 44-114 (201)
179 PTZ00146 fibrillarin; Provisio 89.9 0.66 1.4E-05 48.7 6.3 81 442-529 131-211 (293)
180 PRK06922 hypothetical protein; 89.9 0.53 1.2E-05 54.4 6.0 81 443-531 418-498 (677)
181 PF01728 FtsJ: FtsJ-like methy 89.8 0.65 1.4E-05 44.4 5.7 80 443-533 23-106 (181)
182 COG0030 KsgA Dimethyladenosine 89.7 1.1 2.4E-05 46.3 7.6 77 444-532 31-107 (259)
183 PLN02336 phosphoethanolamine N 89.7 0.43 9.4E-06 52.8 5.1 78 444-532 38-115 (475)
184 PRK00117 recX recombination re 89.6 0.88 1.9E-05 42.9 6.4 70 3-73 83-155 (157)
185 PRK04148 hypothetical protein; 89.3 1.3 2.9E-05 41.3 7.1 56 444-509 17-73 (134)
186 PRK14103 trans-aconitate 2-met 89.3 0.71 1.5E-05 46.7 5.8 72 443-531 29-100 (255)
187 PLN02476 O-methyltransferase 89.0 1.1 2.3E-05 46.9 6.9 84 443-529 118-203 (278)
188 PF02536 mTERF: mTERF; InterP 88.6 1.2 2.6E-05 46.9 7.2 118 2-158 143-267 (345)
189 PLN02366 spermidine synthase 88.1 0.95 2.1E-05 47.9 6.0 82 441-529 89-174 (308)
190 PRK00050 16S rRNA m(4)C1402 me 88.0 1.8 3.8E-05 45.7 7.8 83 444-532 20-102 (296)
191 PRK04457 spermidine synthase; 87.7 0.85 1.8E-05 46.9 5.3 78 442-527 65-143 (262)
192 COG2230 Cfa Cyclopropane fatty 87.3 2 4.3E-05 45.0 7.6 72 433-507 62-135 (283)
193 TIGR01444 fkbM_fam methyltrans 87.3 1.2 2.6E-05 40.4 5.5 60 446-506 1-60 (143)
194 PF02390 Methyltransf_4: Putat 87.1 1.3 2.7E-05 43.7 5.8 82 446-533 20-101 (195)
195 PF07021 MetW: Methionine bios 86.1 1.2 2.6E-05 44.1 5.1 62 435-506 5-67 (193)
196 TIGR00740 methyltransferase, p 86.0 2.1 4.6E-05 42.8 6.9 80 442-531 52-133 (239)
197 PRK15068 tRNA mo(5)U34 methylt 85.5 2 4.3E-05 45.6 6.8 63 443-507 122-185 (322)
198 PF07499 RuvA_C: RuvA, C-termi 85.4 1.4 3.1E-05 33.4 4.1 34 48-84 4-39 (47)
199 COG3963 Phospholipid N-methylt 85.3 2.5 5.5E-05 41.2 6.6 86 443-536 48-133 (194)
200 KOG1271 Methyltransferases [Ge 84.4 1.7 3.6E-05 43.0 5.0 83 446-537 70-153 (227)
201 KOG2078 tRNA modification enzy 83.7 1.3 2.9E-05 48.6 4.4 50 437-489 243-292 (495)
202 TIGR03438 probable methyltrans 83.6 3.7 8.1E-05 42.9 7.7 89 440-534 60-152 (301)
203 PLN02336 phosphoethanolamine N 83.6 2.6 5.7E-05 46.6 7.0 61 442-506 265-326 (475)
204 PRK11524 putative methyltransf 83.0 1.7 3.6E-05 45.2 4.8 43 442-487 207-249 (284)
205 PRK11088 rrmA 23S rRNA methylt 82.9 2.8 6.1E-05 43.0 6.4 70 444-526 86-157 (272)
206 KOG2198 tRNA cytosine-5-methyl 82.4 2.6 5.6E-05 45.6 5.9 93 442-535 154-251 (375)
207 PF02353 CMAS: Mycolic acid cy 82.3 4 8.6E-05 42.4 7.2 67 438-507 57-125 (273)
208 PF02086 MethyltransfD12: D12 81.9 1.1 2.5E-05 44.9 3.0 45 439-486 14-60 (260)
209 PLN02490 MPBQ/MSBQ methyltrans 81.7 3.1 6.8E-05 44.6 6.4 71 443-526 113-184 (340)
210 PRK14134 recX recombination re 81.7 12 0.00026 39.2 10.5 71 3-73 132-208 (283)
211 PF10294 Methyltransf_16: Puta 81.4 4.5 9.8E-05 38.8 6.8 81 442-529 44-128 (173)
212 COG2519 GCD14 tRNA(1-methylade 81.3 4.7 0.0001 41.6 7.2 68 440-507 91-159 (256)
213 PRK11705 cyclopropane fatty ac 81.1 4.5 9.7E-05 44.0 7.4 44 442-488 166-210 (383)
214 COG4076 Predicted RNA methylas 81.1 1.4 3.1E-05 43.6 3.2 61 445-508 34-94 (252)
215 smart00828 PKS_MT Methyltransf 81.1 3.5 7.6E-05 40.5 6.1 58 446-504 2-60 (224)
216 PRK14136 recX recombination re 80.6 14 0.0003 39.2 10.4 120 2-161 183-305 (309)
217 PRK13699 putative methylase; P 80.5 2.8 6.1E-05 42.3 5.2 43 442-487 162-204 (227)
218 PLN03196 MOC1-like protein; Pr 79.9 4.2 9.2E-05 45.7 6.9 71 2-72 200-293 (487)
219 PF02631 RecX: RecX family; I 79.5 15 0.00032 33.0 9.1 113 6-157 2-118 (121)
220 PF08704 GCD14: tRNA methyltra 79.0 4.8 0.0001 41.3 6.4 86 440-531 37-124 (247)
221 KOG1500 Protein arginine N-met 77.9 5.2 0.00011 42.9 6.4 88 429-528 162-251 (517)
222 KOG1499 Protein arginine N-met 77.7 4.2 9E-05 43.7 5.6 60 444-506 61-121 (346)
223 PRK01581 speE spermidine synth 76.9 4.2 9.1E-05 44.2 5.5 81 441-529 148-235 (374)
224 COG0220 Predicted S-adenosylme 76.6 5.9 0.00013 40.2 6.2 87 445-538 50-136 (227)
225 PRK14136 recX recombination re 76.1 4.3 9.2E-05 42.9 5.1 72 3-74 233-305 (309)
226 TIGR00452 methyltransferase, p 75.7 9.1 0.0002 40.7 7.6 39 443-483 121-159 (314)
227 PF03216 Rhabdo_ncap_2: Rhabdo 75.4 2.7 6E-05 43.7 3.4 80 57-174 39-119 (357)
228 KOG0820 Ribosomal RNA adenine 75.3 7.5 0.00016 40.7 6.5 85 437-534 52-137 (315)
229 PF13489 Methyltransf_23: Meth 74.2 6.7 0.00014 35.7 5.5 40 441-483 20-59 (161)
230 COG2518 Pcm Protein-L-isoaspar 73.8 9.2 0.0002 38.4 6.6 61 442-505 71-131 (209)
231 PLN02823 spermine synthase 72.8 6.2 0.00013 42.3 5.5 78 442-528 102-184 (336)
232 COG1568 Predicted methyltransf 72.7 6.8 0.00015 41.1 5.5 69 457-532 165-233 (354)
233 PF03291 Pox_MCEL: mRNA cappin 72.5 4.3 9.3E-05 43.4 4.2 44 443-488 62-105 (331)
234 KOG3191 Predicted N6-DNA-methy 72.1 10 0.00022 37.6 6.2 79 444-532 44-122 (209)
235 KOG1975 mRNA cap methyltransfe 71.6 2.3 5E-05 45.3 1.9 82 444-530 118-206 (389)
236 PF05724 TPMT: Thiopurine S-me 71.3 8.1 0.00018 38.8 5.7 75 442-526 36-122 (218)
237 PRK14605 ruvA Holliday junctio 70.7 14 0.00031 36.5 7.2 38 46-84 147-184 (194)
238 PRK14601 ruvA Holliday junctio 70.3 21 0.00044 35.2 8.1 64 9-72 92-167 (183)
239 PRK13256 thiopurine S-methyltr 70.1 9.1 0.0002 38.8 5.7 41 443-486 43-83 (226)
240 PRK14134 recX recombination re 69.0 41 0.0009 35.2 10.5 122 3-160 83-208 (283)
241 PRK14600 ruvA Holliday junctio 67.9 7.4 0.00016 38.3 4.4 37 134-170 145-181 (186)
242 PRK14137 recX recombination re 67.6 16 0.00035 36.2 6.8 70 4-73 110-181 (195)
243 PRK14603 ruvA Holliday junctio 67.2 16 0.00034 36.3 6.6 27 46-72 151-177 (197)
244 PRK00116 ruvA Holliday junctio 66.9 15 0.00032 36.2 6.4 36 47-82 149-186 (192)
245 PRK14606 ruvA Holliday junctio 66.8 16 0.00034 36.1 6.4 65 9-73 92-169 (188)
246 PF01564 Spermine_synth: Sperm 66.8 8.1 0.00018 39.4 4.7 80 442-529 75-159 (246)
247 COG1867 TRM1 N2,N2-dimethylgua 65.3 8.6 0.00019 41.7 4.6 45 444-491 53-99 (380)
248 KOG1540 Ubiquinone biosynthesi 64.6 17 0.00036 37.9 6.3 66 442-507 99-172 (296)
249 PLN03075 nicotianamine synthas 64.1 18 0.00038 38.3 6.6 83 443-534 123-208 (296)
250 PRK11760 putative 23S rRNA C24 63.8 10 0.00022 40.9 4.9 74 442-533 210-283 (357)
251 PF03216 Rhabdo_ncap_2: Rhabdo 63.8 5 0.00011 41.9 2.4 63 5-67 36-98 (357)
252 PRK01544 bifunctional N5-gluta 63.2 17 0.00037 41.1 6.7 84 443-533 347-430 (506)
253 PF07223 DUF1421: Protein of u 62.8 6.4 0.00014 42.6 3.1 28 46-73 320-347 (358)
254 PF02631 RecX: RecX family; I 62.6 4.4 9.5E-05 36.5 1.6 66 3-70 50-118 (121)
255 COG4106 Tam Trans-aconitate me 62.6 9.1 0.0002 38.9 3.9 59 444-508 31-89 (257)
256 PF01861 DUF43: Protein of unk 61.3 10 0.00022 38.9 4.2 68 457-532 57-124 (243)
257 KOG4169 15-hydroxyprostaglandi 61.3 16 0.00035 37.5 5.4 73 451-528 14-91 (261)
258 PRK14603 ruvA Holliday junctio 60.9 12 0.00027 37.0 4.6 34 135-168 153-189 (197)
259 KOG0011 Nucleotide excision re 60.4 12 0.00026 39.8 4.6 46 43-89 131-176 (340)
260 KOG0919 C-5 cytosine-specific 59.6 2.4 5.3E-05 43.4 -0.6 50 386-435 285-334 (338)
261 cd04711 BAH_Dnmt1_II BAH, or B 58.9 5.9 0.00013 37.2 1.8 97 292-403 29-135 (137)
262 smart00138 MeTrc Methyltransfe 58.3 26 0.00055 36.1 6.6 44 442-486 98-150 (264)
263 KOG1663 O-methyltransferase [S 57.5 65 0.0014 33.0 9.0 79 442-527 74-156 (237)
264 PRK14137 recX recombination re 56.7 1.6E+02 0.0036 29.1 11.6 117 3-161 62-182 (195)
265 PRK14606 ruvA Holliday junctio 56.5 14 0.0003 36.4 4.0 34 135-168 144-178 (188)
266 PRK14602 ruvA Holliday junctio 56.3 16 0.00036 36.3 4.6 36 135-170 156-194 (203)
267 PF13679 Methyltransf_32: Meth 54.2 39 0.00086 31.1 6.5 46 442-488 24-73 (141)
268 TIGR02716 C20_methyl_CrtF C-20 51.8 41 0.0009 34.9 7.0 61 442-504 148-209 (306)
269 COG0293 FtsJ 23S rRNA methylas 50.7 30 0.00065 34.7 5.4 76 440-528 42-119 (205)
270 KOG0011 Nucleotide excision re 50.7 62 0.0013 34.7 7.8 73 12-86 236-336 (340)
271 TIGR00084 ruvA Holliday juncti 50.6 46 0.001 32.8 6.7 29 45-73 145-173 (191)
272 PRK14601 ruvA Holliday junctio 50.1 23 0.00049 34.9 4.3 33 135-168 143-175 (183)
273 PF01596 Methyltransf_3: O-met 49.8 35 0.00075 34.0 5.7 80 444-528 46-129 (205)
274 COG0421 SpeE Spermidine syntha 49.8 27 0.00058 36.7 5.1 79 442-528 75-157 (282)
275 PF08242 Methyltransf_12: Meth 49.6 1.8 3.9E-05 36.8 -3.0 39 448-487 1-39 (99)
276 PF03115 Astro_capsid: Astrovi 49.4 5.6 0.00012 47.2 0.0 23 138-160 714-736 (787)
277 COG1189 Predicted rRNA methyla 49.0 22 0.00047 36.5 4.1 35 442-478 78-112 (245)
278 PRK14605 ruvA Holliday junctio 48.9 24 0.00052 34.9 4.3 36 135-170 149-186 (194)
279 cd08306 Death_FADD Fas-associa 47.2 59 0.0013 27.8 6.0 53 7-59 22-74 (86)
280 PRK14600 ruvA Holliday junctio 47.0 39 0.00084 33.3 5.4 28 46-73 144-171 (186)
281 PRK14604 ruvA Holliday junctio 45.9 81 0.0018 31.3 7.5 26 47-72 149-174 (195)
282 PRK14602 ruvA Holliday junctio 45.6 24 0.00051 35.2 3.8 26 47-72 155-180 (203)
283 PRK13901 ruvA Holliday junctio 45.5 58 0.0012 32.5 6.4 27 46-72 143-169 (196)
284 KOG2671 Putative RNA methylase 44.8 15 0.00032 39.7 2.3 83 440-532 205-296 (421)
285 COG0632 RuvA Holliday junction 44.3 24 0.00051 35.3 3.5 32 138-169 160-194 (201)
286 TIGR00084 ruvA Holliday juncti 43.6 42 0.00091 33.1 5.1 37 135-171 148-186 (191)
287 PRK14604 ruvA Holliday junctio 43.0 31 0.00067 34.2 4.1 34 135-168 150-185 (195)
288 KOG0418 Ubiquitin-protein liga 41.5 26 0.00056 34.6 3.2 30 44-73 159-188 (200)
289 PLN03196 MOC1-like protein; Pr 40.4 51 0.0011 37.2 5.8 23 50-72 343-365 (487)
290 PF08784 RPA_C: Replication pr 40.2 38 0.00082 29.5 3.8 42 27-72 49-90 (102)
291 PF10440 WIYLD: Ubiquitin-bind 39.9 74 0.0016 26.3 5.1 41 47-87 11-62 (65)
292 PF02536 mTERF: mTERF; InterP 39.8 29 0.00062 36.5 3.6 72 2-73 179-269 (345)
293 PF00531 Death: Death domain; 38.9 50 0.0011 26.9 4.2 50 7-57 21-70 (83)
294 PRK03980 flap endonuclease-1; 38.6 99 0.0021 32.6 7.3 62 9-72 196-277 (292)
295 COG2137 OraA Uncharacterized p 36.5 64 0.0014 31.5 5.1 68 6-74 81-167 (174)
296 COG3392 Adenine-specific DNA m 36.4 25 0.00055 36.7 2.4 41 445-488 29-69 (330)
297 KOG2361 Predicted methyltransf 35.8 34 0.00075 35.3 3.2 76 446-527 74-151 (264)
298 PF04816 DUF633: Family of unk 35.8 1.5E+02 0.0033 29.5 7.8 55 447-502 1-56 (205)
299 KOG2689 Predicted ubiquitin re 35.3 38 0.00083 35.3 3.5 33 52-84 5-37 (290)
300 cd08315 Death_TRAILR_DR4_DR5 D 35.3 2.2E+02 0.0048 24.9 7.9 64 6-84 27-91 (96)
301 COG0863 DNA modification methy 35.2 64 0.0014 32.8 5.2 44 442-488 221-264 (302)
302 KOG2689 Predicted ubiquitin re 34.5 27 0.00059 36.4 2.3 32 3-34 5-36 (290)
303 PF07553 Lipoprotein_Ltp: Host 33.2 50 0.0011 25.5 3.0 28 43-70 17-47 (48)
304 PF11599 AviRa: RRNA methyltra 32.9 62 0.0013 33.0 4.4 46 442-488 50-97 (246)
305 COG1715 Mrr Restriction endonu 31.4 23 0.0005 37.3 1.2 65 11-80 139-206 (308)
306 PF02845 CUE: CUE domain; Int 31.2 85 0.0018 22.9 3.9 27 9-36 14-40 (42)
307 TIGR00006 S-adenosyl-methyltra 31.2 1.9E+02 0.0041 30.8 7.9 80 444-528 21-100 (305)
308 PF07553 Lipoprotein_Ltp: Host 30.4 61 0.0013 25.1 3.1 21 138-158 25-48 (48)
309 KOG2915 tRNA(1-methyladenosine 30.3 1.6E+02 0.0035 31.2 7.0 83 443-531 105-188 (314)
310 PF10440 WIYLD: Ubiquitin-bind 30.1 59 0.0013 26.8 3.1 38 2-39 15-63 (65)
311 COG4122 Predicted O-methyltran 28.8 1.3E+02 0.0028 30.5 6.0 78 443-527 59-139 (219)
312 KOG3010 Methyltransferase [Gen 28.0 62 0.0013 33.5 3.5 39 446-487 36-74 (261)
313 COG0632 RuvA Holliday junction 27.0 65 0.0014 32.2 3.4 26 49-74 158-183 (201)
314 PF04695 Pex14_N: Peroxisomal 26.5 70 0.0015 29.8 3.4 30 134-163 23-52 (136)
315 KOG0418 Ubiquitin-protein liga 26.2 61 0.0013 32.1 3.0 27 135-161 163-189 (200)
316 KOG2360 Proliferation-associat 26.1 95 0.0021 34.2 4.7 85 443-538 213-302 (413)
317 PF11372 DUF3173: Domain of un 25.1 43 0.00094 27.1 1.5 20 3-22 7-26 (59)
318 PF08587 UBA_2: Ubiquitin asso 24.1 24 0.00051 27.2 -0.2 22 49-70 4-26 (46)
319 PF04533 Herpes_U44: Herpes vi 23.8 1E+02 0.0022 31.0 4.1 35 3-39 38-74 (210)
320 PLN02589 caffeoyl-CoA O-methyl 23.5 1.9E+02 0.004 29.8 6.1 79 444-527 80-163 (247)
321 COG4221 Short-chain alcohol de 23.5 2.1E+02 0.0045 29.6 6.4 70 451-526 15-87 (246)
322 PF05971 Methyltransf_10: Prot 23.0 1.3E+02 0.0027 32.0 4.9 82 442-531 101-188 (299)
323 PF14490 HHH_4: Helix-hairpin- 23.0 1.1E+02 0.0023 26.4 3.7 29 45-73 6-34 (94)
324 PF12147 Methyltransf_20: Puta 22.9 2.9E+02 0.0062 29.5 7.3 64 442-505 134-199 (311)
325 PTZ00217 flap endonuclease-1; 22.6 3.1E+02 0.0067 30.2 7.9 62 9-72 242-331 (393)
326 COG4008 Predicted metal-bindin 22.3 2.9E+02 0.0062 25.9 6.3 48 29-84 102-149 (153)
327 COG0286 HsdM Type I restrictio 21.9 3.7E+02 0.0079 30.4 8.6 118 444-564 187-318 (489)
328 PRK00116 ruvA Holliday junctio 21.7 1E+02 0.0022 30.3 3.7 34 135-168 150-184 (192)
329 smart00546 CUE Domain that may 21.6 1.6E+02 0.0035 21.5 3.9 34 3-37 7-42 (43)
330 PRK08339 short chain dehydroge 21.6 3E+02 0.0065 27.5 7.2 67 458-527 25-92 (263)
331 PF06135 DUF965: Bacterial pro 21.4 2.1E+02 0.0044 24.6 4.8 53 13-86 22-76 (79)
332 cd08316 Death_FAS_TNFRSF6 Deat 21.4 4.5E+02 0.0097 23.2 7.2 62 7-82 29-91 (97)
333 PF02527 GidB: rRNA small subu 21.4 2E+02 0.0043 28.2 5.6 59 446-505 51-109 (184)
334 smart00005 DEATH DEATH domain, 21.0 1.8E+02 0.0039 24.1 4.6 34 7-40 26-59 (88)
335 cd08804 Death_ank2 Death domai 20.8 2.2E+02 0.0047 24.3 5.0 34 7-40 24-57 (84)
336 PF11372 DUF3173: Domain of un 20.6 1E+02 0.0022 25.0 2.7 20 52-71 7-26 (59)
337 TIGR03674 fen_arch flap struct 20.6 2.5E+02 0.0055 30.1 6.7 62 9-72 243-324 (338)
338 PF09243 Rsm22: Mitochondrial 20.6 2.2E+02 0.0047 29.5 6.0 43 444-487 34-77 (274)
339 PF07223 DUF1421: Protein of u 20.4 84 0.0018 34.2 3.0 26 135-160 322-347 (358)
340 KOG1253 tRNA methyltransferase 20.4 72 0.0016 36.1 2.5 47 441-489 107-155 (525)
341 KOG2040 Glycine dehydrogenase 20.2 98 0.0021 36.4 3.5 82 9-90 58-172 (1001)
342 COG2137 OraA Uncharacterized p 20.0 8.2E+02 0.018 23.9 10.7 30 132-161 138-167 (174)
343 COG0357 GidB Predicted S-adeno 20.0 1.9E+02 0.0041 29.3 5.2 71 444-526 68-141 (215)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=99.90 E-value=5.8e-24 Score=218.59 Aligned_cols=106 Identities=28% Similarity=0.596 Sum_probs=90.5
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
++++||||||||+++||+++|+ ++++|+|+++.|+++|+.|+. .+.++||++++...++. ++|||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l 65 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL 65 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence 5799999999999999999996 699999999999999998753 57899999999887662 59999
Q ss_pred EEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 525 IGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 525 iGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+||||||+||.+|+ ++|.+|+|+.||++|+|+|+.+||++.
T Consensus 66 ~ggpPCQ~fS~ag~--~~~~~d~r~~L~~~~~~~v~~~~Pk~~ 106 (335)
T PF00145_consen 66 IGGPPCQGFSIAGK--RKGFDDPRNSLFFEFLRIVKELKPKYF 106 (335)
T ss_dssp EEE---TTTSTTST--HHCCCCHTTSHHHHHHHHHHHHS-SEE
T ss_pred EeccCCceEecccc--ccccccccchhhHHHHHHHhhccceEE
Confidence 99999999999996 668899999999999999999999973
No 2
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.1e-23 Score=220.94 Aligned_cols=111 Identities=23% Similarity=0.532 Sum_probs=99.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
..++++||||||||+++||+++|+ ++++++|+++.|+++|+.| ++...+..+||.++..+.+.. .++|
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n-----~~~~~~~~~di~~~~~~~~~~-----~~~D 69 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKAN-----FPHGDIILGDIKELDGEALRK-----SDVD 69 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHh-----CCCCceeechHhhcChhhccc-----cCCC
Confidence 468899999999999999999996 6999999999999999975 554567889999999877652 1799
Q ss_pred EEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 523 LVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+|+||||||+||.||+ ++|++|+|++||++|+|+|+.+||++.
T Consensus 70 vligGpPCQ~FS~aG~--r~~~~D~R~~L~~~~~r~I~~~~P~~f 112 (328)
T COG0270 70 VLIGGPPCQDFSIAGK--RRGYDDPRGSLFLEFIRLIEQLRPKFF 112 (328)
T ss_pred EEEeCCCCcchhhcCc--ccCCcCccceeeHHHHHHHHhhCCCEE
Confidence 9999999999999997 578999999999999999999999863
No 3
>PRK10458 DNA cytosine methylase; Provisional
Probab=99.86 E-value=9.5e-22 Score=214.37 Aligned_cols=121 Identities=19% Similarity=0.379 Sum_probs=98.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhH--------HHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRI--------EQM 514 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l--------~~~ 514 (569)
.+++++||||||||+++||+++|+ ++|+++|+++.|++||+.||. +.++..++.+||++++...+ ...
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhh
Confidence 478999999999999999999998 589999999999999998753 23556677899999974321 111
Q ss_pred H-hccCCeeEEEEcCCCCccccCCCCCC------CCC-CCCccchHHHHHHHHHHhccccc
Q 008350 515 I-NAFGGFDLVIGGSPCNNLAGSNRHSR------DGL-EGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 515 ~-~~~g~~DlliGGpPCQ~fS~ag~~kr------~Gl-~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+ ...+++|+|+||||||+||.||..++ .|+ +|+|+.||++|+|+|+.++|++.
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~f 223 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIF 223 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEE
Confidence 1 12468999999999999999996432 355 37899999999999999999973
No 4
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=8.7e-22 Score=205.64 Aligned_cols=103 Identities=27% Similarity=0.590 Sum_probs=92.2
Q ss_pred eeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEE
Q 008350 447 VLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 447 vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliG 526 (569)
|+|||||+||+++||+++|+ ++++++|+++.|+++|+.| +++ .++.+||++++..++ +++|+|+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N-----~~~-~~~~~Di~~~~~~~~-------~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEAN-----FGN-KVPFGDITKISPSDI-------PDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHh-----CCC-CCCccChhhhhhhhC-------CCcCEEEe
Confidence 68999999999999999997 5899999999999999975 455 567899999986543 47999999
Q ss_pred cCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhcccc
Q 008350 527 GSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMM 566 (569)
Q Consensus 527 GpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~ 566 (569)
|||||+||.+|+ ++|++|+|+.||++|+|+|+.++|++
T Consensus 66 g~PCq~fS~ag~--~~~~~d~r~~L~~~~~r~i~~~~P~~ 103 (315)
T TIGR00675 66 GFPCQPFSIAGK--RKGFEDTRGTLFFEIVRILKEKKPKF 103 (315)
T ss_pred cCCCcccchhcc--cCCCCCchhhHHHHHHHHHhhcCCCE
Confidence 999999999996 56888999999999999999999987
No 5
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=99.84 E-value=1.8e-21 Score=199.56 Aligned_cols=107 Identities=26% Similarity=0.527 Sum_probs=94.7
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
++++|||||+||+++||+++|+ ++++++|+++.|+++|+.|+ ++. ++++||+++....+ .+++|+|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~-----~~~-~~~~Di~~~~~~~~------~~~~D~l 66 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANF-----PNK-LIEGDITKIDEKDF------IPDIDLL 66 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhC-----CCC-CccCccccCchhhc------CCCCCEE
Confidence 5799999999999999999997 68999999999999999764 433 67899999986543 2689999
Q ss_pred EEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 525 IGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 525 iGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+||||||+||.+|+ ++|.+|+|+.||++|+|+|+.++|++.
T Consensus 67 ~~gpPCq~fS~ag~--~~~~~d~r~~L~~~~~~~i~~~~P~~~ 107 (275)
T cd00315 67 TGGFPCQPFSIAGK--RKGFEDTRGTLFFEIIRILKEKKPKYF 107 (275)
T ss_pred EeCCCChhhhHHhh--cCCCCCchHHHHHHHHHHHHhcCCCEE
Confidence 99999999999997 567899999999999999999999873
No 6
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=99.30 E-value=3.4e-12 Score=126.64 Aligned_cols=109 Identities=20% Similarity=0.381 Sum_probs=95.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
++++|++|+||+||+..+|+.+.|+...|.|+|++..|.++|..| ..+.++...||+.++.+++..+ .+|
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N-----~h~~L~k~~~I~~lt~kefd~l-----~~~ 71 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN-----YHSNLVKTRNIQSLTVKEFDKL-----QAN 71 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC-----cccchhhccccceeeHhhhhhc-----ccc
Confidence 468999999999999999999999999999999999999999864 2234567789999998877653 789
Q ss_pred EEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhc
Q 008350 523 LVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVK 563 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vr 563 (569)
++..+||||+|...|+ ++...|+|+..|.+.+.+|-.++
T Consensus 72 m~lMSPpCQPfTRiG~--q~D~~D~Rs~aflhil~~lP~~q 110 (338)
T KOG0919|consen 72 MLLMSPPCQPFTRIGL--QRDTEDKRSDAFLHILGLLPECQ 110 (338)
T ss_pred eEeeCCCCCchhhhcc--cccccCchhHHHHHHHhhhhhhh
Confidence 9999999999999997 66789999999999999887665
No 7
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=2.1e-11 Score=132.60 Aligned_cols=206 Identities=20% Similarity=0.213 Sum_probs=141.9
Q ss_pred CCCCcccHHhhchhhhccCCC-----CCccCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc-ccce
Q 008350 307 VPLPPQNIYEALPLSRKWWPS-----WDTRSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR-KWNL 380 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~-----~d~r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck-~~nl 380 (569)
.|+.++.++++++.++.|+.. |+.+++.+.|++.+.+.-. +++...++.. .+++.+..+.....+.. .+..
T Consensus 156 C~v~~~~~~~il~~l~~~l~~~~~~~y~~~~~~g~l~~~~~~~g~-~~~i~~v~~~--~~~~~~~~~~~~~~~~~~~~i~ 232 (432)
T COG2265 156 CPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQ-EVMVRLVTKH--LPELEQALRELLEAFPEIKGIV 232 (432)
T ss_pred cCccCHhHHHHHHHHHHHHHHcCCCccchhhccceEEEEEeccCc-eEEEEEEecc--chhHHHHHHHHHHhhhhcceEE
Confidence 678888899999999888766 5656889988888722211 6777776665 32234444444444444 4456
Q ss_pred eeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhH
Q 008350 381 VWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGG 456 (569)
Q Consensus 381 vwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG 456 (569)
.++++.+...+.+.+...++|.. +.+. .....+.+-+ |||+|.. +|.............+++|||||+|+
T Consensus 233 ~~i~~~~~~~i~g~~~~~~~~~~--~i~e---~~~~~~~~~s-F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~ 306 (432)
T COG2265 233 QNINRAKTNVIEGDEEITLYGLE--SIRE---GVSFQISPRS-FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGT 306 (432)
T ss_pred EEecCCCCceEEcceeEEEeccc--cccc---ceEEEeCCCC-ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCCh
Confidence 66677666666766666666632 2222 2334444444 9999866 24333222222345789999999999
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCC
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSP 529 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpP 529 (569)
|++.+.+.. +.|.++|+++.|+..++.|...++..++.+..+|..++...... ...+|.|+..||
T Consensus 307 f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~-----~~~~d~VvvDPP 371 (432)
T COG2265 307 FGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE-----GYKPDVVVVDPP 371 (432)
T ss_pred hhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc-----cCCCCEEEECCC
Confidence 999999765 57999999999999999999888777777888998888754321 147899999999
No 8
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.11 E-value=2.5e-10 Score=122.39 Aligned_cols=207 Identities=11% Similarity=0.092 Sum_probs=127.9
Q ss_pred CCCCcccHHhhchhhhcc-----CCCCCccCCcccceeec--cchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc---
Q 008350 307 VPLPPQNIYEALPLSRKW-----WPSWDTRSHLNCLQTCI--ASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR--- 376 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~-----~p~~d~r~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck--- 376 (569)
.|+.++.|+++++.++.| ++.|+..++-+.|+++. .+..+.+.+..+++..... + +..++....+++
T Consensus 87 C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~~~~~~v~l~~~~~~~--~-~~~~~~~~~~~~~~~ 163 (374)
T TIGR02085 87 CPLYPQSFQPVFAYLKNFIARAGLTPYNVAKKKGELKFILLTESENSGQLMLRFVLRSETK--L-AQIRRALPWLIEQLP 163 (374)
T ss_pred CCCCCHhHHHHHHHHHHHHHHcCCCCccccCCCccceEEEEEEeccCCCEEEEEEECCCcc--c-hhHHHHHHHHHHHCC
Confidence 678888999998988888 45577666667788765 2333455555554432111 1 122222211222
Q ss_pred cc-ceeeeccCcc-ccCCcccceeeccCCCCccccCCcccceeeccccccccccchhhh--hhhhhccC--CCCcceecc
Q 008350 377 KW-NLVWVGRNKL-APLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYH--LSVLKEMY--PDGINVLSL 450 (569)
Q Consensus 377 ~~-nlvwvg~~~~-~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~--ls~lk~~~--~~~i~vlDL 450 (569)
.+ .+.|..+... ..+..++...+.| ..|........+.++.+.+ |||+|..... +..+.... ...-+|+||
T Consensus 164 ~~~~v~~~~~~~~~~~~~g~~~~~l~G--~~~i~e~~~g~~~~~~~~~-F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL 240 (374)
T TIGR02085 164 QLEVISVNIQPVHMAILEGEEEIFLTE--QQALPERFNDVPLVIRPQS-FFQTNPKVAAQLYATARQWVREIPVTQMWDL 240 (374)
T ss_pred CcEEEEEEECCCCCCceECceEEEEcC--CCeeEEEECCEEEEECCCc-cccCCHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 12 2223222221 2222333344567 4455544455678889888 9999866211 11111111 123579999
Q ss_pred ccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCC
Q 008350 451 FSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSP 529 (569)
Q Consensus 451 FSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpP 529 (569)
|||+|.+++.+...| ..|+++|+++.|++..+.|...++..+..++.+|+.++... . .+.+|+|+..||
T Consensus 241 ~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~------~~~~D~vi~DPP 309 (374)
T TIGR02085 241 FCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-Q------MSAPELVLVNPP 309 (374)
T ss_pred cCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-c------CCCCCEEEECCC
Confidence 999999999998776 36999999999999999998766555566788888765421 1 135899999999
No 9
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=5.1e-10 Score=117.13 Aligned_cols=210 Identities=13% Similarity=0.064 Sum_probs=130.5
Q ss_pred CCCCcccHHhhchhhhcc-----CCCCCccCCcccceeec--cchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc---
Q 008350 307 VPLPPQNIYEALPLSRKW-----WPSWDTRSHLNCLQTCI--ASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR--- 376 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~-----~p~~d~r~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck--- 376 (569)
.|+.++.|+++++.++.+ ++.|+.+.+.+.++++. .+....+.+..+++..... + +..++.....++
T Consensus 27 C~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~lr~~~ir~~~~~~~~~v~l~~~~~~~--~-~~~~~~~~~~~~~~~ 103 (315)
T PRK03522 27 CPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGELMLRFVLRSETK--L-ARLRRALPWLQAQLP 103 (315)
T ss_pred CcCCCHHHHHHHHHHHHHHHHcCCCCCcCCCCCceeeEEEEEeecCCCCEEEEEEECCCcc--c-hhHHHHHHHHHHHCC
Confidence 788888899888888887 56678776678788776 2222455554444332111 1 112222111222
Q ss_pred -ccceeeeccC-ccccCCcccceeeccCCCCccccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceecc
Q 008350 377 -KWNLVWVGRN-KLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSL 450 (569)
Q Consensus 377 -~~nlvwvg~~-~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDL 450 (569)
...+.|..+. ....+..++...+.| .++..........++.+.+ |||+|.. .+...........+-+|+||
T Consensus 104 ~~~~v~~~~~~~~~~~~~g~~~~~l~g--~~~~~~~~~~~~~~~~~~s-F~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl 180 (315)
T PRK03522 104 QLKVISVNIQPVHMAILEGEEEIFLTE--QQALPERFNGVPLFIRPQS-FFQTNPAVAAQLYATARDWVRELPPRSMWDL 180 (315)
T ss_pred CCEEEEEEECCCCCCcccCCceEEEeC--CCeEEEEECCEEEEECCCe-eeecCHHHHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1122232222 223333334445667 4555554555678888877 9999864 22211111111134689999
Q ss_pred ccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 451 FSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 451 FSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
|||.|.+++.+.+.| ..|+++|+++.+++..+.|...++..+..++.+|+.++... . .+.+|+|+..||+
T Consensus 181 ~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-~------~~~~D~Vv~dPPr 250 (315)
T PRK03522 181 FCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-Q------GEVPDLVLVNPPR 250 (315)
T ss_pred cCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-c------CCCCeEEEECCCC
Confidence 999999999999977 36999999999999999887766655567888888765421 1 1368999999997
Q ss_pred Cc
Q 008350 531 NN 532 (569)
Q Consensus 531 Q~ 532 (569)
.+
T Consensus 251 ~G 252 (315)
T PRK03522 251 RG 252 (315)
T ss_pred CC
Confidence 64
No 10
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.04 E-value=7.5e-10 Score=120.50 Aligned_cols=212 Identities=12% Similarity=0.058 Sum_probs=133.0
Q ss_pred CCCCcccHHhhchhhhcc-----CCCCCccCCcccceeec--cchhHHHHHHhhhhccCCCCCCCccchhHHHhh----h
Q 008350 307 VPLPPQNIYEALPLSRKW-----WPSWDTRSHLNCLQTCI--ASAKLTERIRKALEECDGEPEPPHHVQKFVMDE----C 375 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~-----~p~~d~r~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~----c 375 (569)
.|+.++.|+++++.++.+ ++.|+...+.+.++++. .+....+.+..+++..... +..+.....+ -
T Consensus 147 C~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~lr~i~ir~~~~~~~~~v~~~~~~~~~----~~~~~~~~~l~~~~~ 222 (431)
T TIGR00479 147 CPVQDPALNLLLPKVKAILENFGASIYLEHKELGKARHGVLRIGRRTGELLLVLRTALEGF----PHKEELALELQERYP 222 (431)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCccccccCcccceEEEEEEeccCCCEEEEEEECCCcc----ccHHHHHHHHHHhCC
Confidence 677788899998888887 55577666667777665 2222344444444333221 1112111111 1
Q ss_pred cccceeeeccC-ccccCCcccceeeccCCCCccccCCcccceeeccccccccccchh----hhhhhhhccCCCCcceecc
Q 008350 376 RKWNLVWVGRN-KLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVA----YHLSVLKEMYPDGINVLSL 450 (569)
Q Consensus 376 k~~nlvwvg~~-~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~----~~ls~lk~~~~~~i~vlDL 450 (569)
....+.|..+. ....+.+++.+.+.| ..++.......+.++.+.+ |||+|... +............-+|+||
T Consensus 223 ~v~~v~~~~~~~~~~~~~g~~~~~l~G--~~~~~~~~~~~~~~~~~~~-F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl 299 (431)
T TIGR00479 223 DVKSICQNINPEKTNVIFGEETEQIAG--EGPIYEKSGDLSFSLSARD-FFQVNSGQNEKLVDRALEALELQGEELVVDA 299 (431)
T ss_pred CceEEEEEeCCCCCCeeeCCceEEEeC--CCeEEEEECCEEEEECCCc-eeecCHHHHHHHHHHHHHHhccCCCCEEEEc
Confidence 12244443222 223444456677778 4555554556778888876 99988652 2211111122345789999
Q ss_pred ccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 451 FSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 451 FSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
|||+|.+++.+.+.+ +.|+++|+++.+++..+.|...++..+..++.+|+.++... +. ...+.+|+|+..||.
T Consensus 300 ~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~-~~---~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 300 YCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK-QP---WAGQIPDVLLLDPPR 372 (431)
T ss_pred CCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH-HH---hcCCCCCEEEECcCC
Confidence 999999999999876 46899999999999999988766666677888998764321 11 112358999999997
Q ss_pred Cc
Q 008350 531 NN 532 (569)
Q Consensus 531 Q~ 532 (569)
.+
T Consensus 373 ~G 374 (431)
T TIGR00479 373 KG 374 (431)
T ss_pred CC
Confidence 65
No 11
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.94 E-value=3.4e-10 Score=120.40 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=106.6
Q ss_pred CCCCcccHHhhchhhhccCCCCC-ccCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhcccceeeecc
Q 008350 307 VPLPPQNIYEALPLSRKWWPSWD-TRSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKWNLVWVGR 385 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~~d-~r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~nlvwvg~ 385 (569)
.|+.++.|+++++.++.++..+. .+.++..+... +....+.+..+++... ++...+.....+....++.++++
T Consensus 68 C~i~~~~In~~l~~l~~~l~~~~~l~~~l~~i~~~--~~~~~ei~V~lv~~~~----l~~~~~~~~~~L~~~~~~~ii~~ 141 (352)
T PF05958_consen 68 CPIADPEINKLLPALRELLKKNEKLKNKLFHIEFL--STLSGEIMVTLVTHKP----LDDEWKEALEALAQNLNVNIIGR 141 (352)
T ss_dssp -TTB-HHHHHHHHHHHHHHTTSHHHHTCEEEEEEE--EETTCEEEEEEEESS-------HHHHHHHHHHHHTEEEEEECC
T ss_pred CccccHHHHHHHHHHHHHHhhhhhhhceeeEEEEE--EecCCCEEEEEEeCCc----CCHHHHHHHHhhhhcceEEEEEc
Confidence 67788999999999999985532 22222222211 1112344444444332 23333444433434444444444
Q ss_pred CccccCCcccceeeccCCCCcc----ccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhHH
Q 008350 386 NKLAPLEPDEVEMLLGFPKNHT----RGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGGA 457 (569)
Q Consensus 386 ~~~~~l~~~e~E~l~GfP~~~t----~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG~ 457 (569)
.+-. ..++| .++. .......+.++.+-+ |||+|+. +|............ +++|||||+|.+
T Consensus 142 ~~~~-------~~~~~--~~~v~~~l~~~~~~~~~~~~~~s-FfQvN~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~f 210 (352)
T PF05958_consen 142 SKKT-------KIVLG--QDYVEERLEIQDKGLSFRISPGS-FFQVNPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTF 210 (352)
T ss_dssp CTCE-------EEECS---CEEECE--ECCCTEEEEEETTS----SBHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCC
T ss_pred CCcc-------EEEcc--CcEEeeEeeeeccceEEEECCCc-CccCcHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHH
Confidence 3321 11112 1111 111223466777777 9999977 34433222121223 799999999999
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-----hHHHHHh---ccCCeeEEEEcCC
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-----RIEQMIN---AFGGFDLVIGGSP 529 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-----~l~~~~~---~~g~~DlliGGpP 529 (569)
++.+.+.+ +.|.+||+++.|++.++.|...++..++.++.+++.++... .+..+.. ....+|+|+..||
T Consensus 211 sl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 211 SLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 99998876 57999999999999999999888887888888887766421 0000000 1136899999999
Q ss_pred CC
Q 008350 530 CN 531 (569)
Q Consensus 530 CQ 531 (569)
=.
T Consensus 288 R~ 289 (352)
T PF05958_consen 288 RA 289 (352)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 12
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.74 E-value=1.2e-08 Score=109.01 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=116.7
Q ss_pred CCCCcccHHhhchhhhccCCCCCccCC-cccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhccc-ceeeec
Q 008350 307 VPLPPQNIYEALPLSRKWWPSWDTRSH-LNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKW-NLVWVG 384 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~~d~r~~-~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~-nlvwvg 384 (569)
.|+.++.|+++++.++.+++.++...+ ++.+..... ...+.+..+++. .. +++..+.....+++.. ++..++
T Consensus 77 C~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~v~l~~~-~~---~~~~~~~~~~~l~~~~~~~~i~~ 150 (362)
T PRK05031 77 FPIASELINALMPALLAALRANPVLRHKLFQVDFLST--LSGEILVSLLYH-KK---LDEEWEQAAKALRDALFNVHLIG 150 (362)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCchheEEEEEEEEec--CCCCEEEEEEEC-CC---CChHHHHHHHHHHHHCCCcEEEe
Confidence 677888899999989888877764221 222221111 233444444432 11 1112222222122211 111122
Q ss_pred cCccccCCcccceeeccCCCCccccCC--cc--cceeeccccccccccchh----hhhhhhhccC-CCCcceeccccChh
Q 008350 385 RNKLAPLEPDEVEMLLGFPKNHTRGGG--IS--RTDRYKSLGNSFQVDTVA----YHLSVLKEMY-PDGINVLSLFSGIG 455 (569)
Q Consensus 385 ~~~~~~l~~~e~E~l~GfP~~~t~~~~--~s--~t~R~k~lgn~fqvnt~~----~~ls~lk~~~-~~~i~vlDLFSGiG 455 (569)
+. ...+.++| ++|..... .. ...++.+.+ |||+|+.. +... .... +.+.+++|||||+|
T Consensus 151 ~~-------~~~~~~~G--~~~i~e~l~~~~~~~~~~~~~~s-F~Q~N~~~~e~l~~~v--~~~~~~~~~~vLDl~~G~G 218 (362)
T PRK05031 151 RS-------RKQKIVLD--QDYVDERLPVAGREFIYRQVENS-FTQPNAAVNEKMLEWA--LDATKGSKGDLLELYCGNG 218 (362)
T ss_pred cC-------CCcEEEcC--CCEEEEEEecCCcEEEEEeCCCC-eeccCHHHHHHHHHHH--HHHhhcCCCeEEEEecccc
Confidence 11 11234556 45544433 23 567887877 99999652 2211 1111 12246999999999
Q ss_pred HHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHH-----h----ccCCeeEEEE
Q 008350 456 GAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMI-----N----AFGGFDLVIG 526 (569)
Q Consensus 456 G~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~-----~----~~g~~DlliG 526 (569)
++++++.+.. +.|+++|+++.|++..+.|...++..+..++.+|+.++..+ +.... + ....+|+|+.
T Consensus 219 ~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~~~~~~~D~v~l 294 (362)
T PRK05031 219 NFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGIDLKSYNFSTIFV 294 (362)
T ss_pred HHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-HhhcccccccccccccCCCCCEEEE
Confidence 9999998864 47999999999999999987666555667889999776422 21100 0 0114899999
Q ss_pred cCCC
Q 008350 527 GSPC 530 (569)
Q Consensus 527 GpPC 530 (569)
+||=
T Consensus 295 DPPR 298 (362)
T PRK05031 295 DPPR 298 (362)
T ss_pred CCCC
Confidence 9994
No 13
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.57 E-value=1.4e-07 Score=103.31 Aligned_cols=203 Identities=17% Similarity=0.162 Sum_probs=117.2
Q ss_pred CCCCcccHHhhchhhhccCCCCCccCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc--ccceeeec
Q 008350 307 VPLPPQNIYEALPLSRKWWPSWDTRSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR--KWNLVWVG 384 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~~d~r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck--~~nlvwvg 384 (569)
.|+.++.|+++++.++.|++.++.+..++.|. +..+ .....+ ++..... ++....+.+....+ ...+ |+.
T Consensus 168 C~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~i-~~~ 239 (443)
T PRK13168 168 CPVLVPPLSALLPPLRALLSSLSAKRRLGHVE-LAQG-DNGTAL--VLRHLEP---LSEADRAKLRAFAEQHGLQL-YLQ 239 (443)
T ss_pred CccCCHhHHHHHHHHHHHHHHcCCCccccEEE-EEEe-CCceEE--EEEEcCC---CChHHHHHHHHHhhcccEEE-EEE
Confidence 67888999999999999888777654444444 2111 111111 1101011 11111111111211 1122 321
Q ss_pred cCccccCCcccceeeccC--CC-CccccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhHH
Q 008350 385 RNKLAPLEPDEVEMLLGF--PK-NHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGGA 457 (569)
Q Consensus 385 ~~~~~~l~~~e~E~l~Gf--P~-~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG~ 457 (569)
.. .+....++|. .. .++.. ..+.+.++++.+ |||+|.. .+...........+.+|+|||||.|.+
T Consensus 240 ~~------~~~~~~i~g~~~~~~~~~~~-~~g~~f~~~~~~-F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~ 311 (443)
T PRK13168 240 PK------GPDLVHLLGPADAQLSYYLP-EFGLRLAFSPRD-FIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNF 311 (443)
T ss_pred CC------CCcceeecccccCCcceEEE-cCCeEEEECCCC-eEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHH
Confidence 11 1122233342 01 22222 345677888767 9998855 222211111223457899999999999
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhh-HHHHHhccCCeeEEEEcCCCCcc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANR-IEQMINAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~-l~~~~~~~g~~DlliGGpPCQ~f 533 (569)
++.+.+.+ ..|+++|+++.+.+.++.|...++..+..++.+|+.+...+. +. .+.+|+|+..||+.+.
T Consensus 312 sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~-----~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 312 TLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWA-----LGGFDKVLLDPPRAGA 380 (443)
T ss_pred HHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhh-----cCCCCEEEECcCCcCh
Confidence 99999887 369999999999999998876666656778899987653211 11 1468999999998763
No 14
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.46 E-value=1.4e-07 Score=97.10 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=96.6
Q ss_pred cCCCeeeEeccccCCC----cchHHhhhhc----ccCCCceechhhc-chhhhcccccccc----CCCCCC--CCCCCCc
Q 008350 247 AGPPYFYYENVALAPK----GVWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVHNL----PIKNRH--HLVPLPP 311 (569)
Q Consensus 247 ~~p~~f~~~nv~~~~~----~~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyihnl----p~~~r~--~~~p~~p 311 (569)
.+|.+|++|||..+-. ..+..|-+.| |.+.+.++|++.| .||.|+|.|+=.. +...-. +-.+...
T Consensus 102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~ 181 (275)
T cd00315 102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK 181 (275)
T ss_pred cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence 4899999999998865 4566665555 7899999999999 7889999996322 221111 1122344
Q ss_pred ccHHhhchhhhccCCCCCccCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhcccceeeeccCccccC
Q 008350 312 QNIYEALPLSRKWWPSWDTRSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKWNLVWVGRNKLAPL 391 (569)
Q Consensus 312 ~tI~ealp~~r~~~p~~d~r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~nlvwvg~~~~~~l 391 (569)
.++.+++ ++..|+. ...|+++...+ ..+.. . .. . .-.+.++...+.|
T Consensus 182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~------------~~~~~--~-~~---------~--~~~~~~~~~~R~l 228 (275)
T cd00315 182 KTLKDIL-----RIRDPDE--PSPTLTASYGK------------GTGSV--H-PT---------A--PDMIGKESNIRRL 228 (275)
T ss_pred CcHHHHH-----hhhcCCC--CccceecCCCC------------Ccccc--c-cC---------c--ccccccCCCCCCC
Confidence 6788887 2233443 22333322211 00000 0 00 0 0003456677999
Q ss_pred CcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 392 EPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 392 ~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
++.|..+|+|||++|...+. +.+.+++++||++.+...
T Consensus 229 T~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~ 266 (275)
T cd00315 229 TPRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVA 266 (275)
T ss_pred CHHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHH
Confidence 99999999999999988532 889999999999987643
No 15
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.32 E-value=3.3e-06 Score=83.44 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred cccceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEE
Q 008350 393 PDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVV 472 (569)
Q Consensus 393 ~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~ 472 (569)
-..++.|.|.+...|.....+-++++-...-+|.. .....-..+...+..+-+|+|+|||+|.|++.+.+.+- .+.|+
T Consensus 52 ~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~-rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~ 129 (200)
T PF02475_consen 52 TPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSP-RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVY 129 (200)
T ss_dssp B--EEEEEES--SEEEEEETTEEEEEETTTS---G-GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEE
T ss_pred cccEEEEeCCCceEEEEEeCCEEEEEccceEEEcc-ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEE
Confidence 34788999977677776666666666554433333 33333334445566788999999999999999988321 25799
Q ss_pred eeccCHHHHHHHHHHHhhcCCCCc-ccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 473 SVDISEVNRNIVRSWWEQTNQKGT-LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 473 avEid~~A~~t~~~n~~~~N~~~~-~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
|+|+++.|.+.++.|...++..+. .++++|.+++..+ +.+|-|+.+.|=
T Consensus 130 A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~---------~~~drvim~lp~ 179 (200)
T PF02475_consen 130 AVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE---------GKFDRVIMNLPE 179 (200)
T ss_dssp EEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T---------T-EEEEEE--TS
T ss_pred EecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc---------cccCEEEECChH
Confidence 999999999999999877666553 3678998888641 478999999883
No 16
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.26 E-value=2.2e-06 Score=91.43 Aligned_cols=205 Identities=13% Similarity=0.043 Sum_probs=112.4
Q ss_pred CCCCcccHHhhchhhhccCCCCCccCCcc-cceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc-ccceeeec
Q 008350 307 VPLPPQNIYEALPLSRKWWPSWDTRSHLN-CLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR-KWNLVWVG 384 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~~d~r~~~n-~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck-~~nlvwvg 384 (569)
.|+.++.|+++++.++.|++.|+...+.+ .+.... + ...+.+..+++. .. +............. ..++..++
T Consensus 68 C~i~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~v~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T TIGR02143 68 FPAASELINRLMPALIAALRQNPALRHKLFQVDFLT-T-LSGEALVSLLYH-KQ---LDDEWRQAAEALKDIKLNVNLIG 141 (353)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCcccceeEEEEEEe-c-CCCCEEEEEEeC-Cc---ccHHHHHHHHHHHHhCCceEEEE
Confidence 67888899999999999888876432221 222122 1 233333333222 11 11111111111100 01110011
Q ss_pred cCccccCCcccceeeccCCCCccccCC--cc--cceeeccccccccccchhhh--hhhhhccC-CCCcceeccccChhHH
Q 008350 385 RNKLAPLEPDEVEMLLGFPKNHTRGGG--IS--RTDRYKSLGNSFQVDTVAYH--LSVLKEMY-PDGINVLSLFSGIGGA 457 (569)
Q Consensus 385 ~~~~~~l~~~e~E~l~GfP~~~t~~~~--~s--~t~R~k~lgn~fqvnt~~~~--ls~lk~~~-~~~i~vlDLFSGiGG~ 457 (569)
.+ ...+.+.| ++|..... .. .+.++.+-+ |||+|..... +....... ..+.+++|||||+|.+
T Consensus 142 ~~-------~~~~~l~G--~~~~~~~~~~~~~~~~~~~~~~~-F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~ 211 (353)
T TIGR02143 142 RA-------RKKKIVLD--QDYVDETLPVAGREFIYRQVENS-FTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNF 211 (353)
T ss_pred cC-------CCcEEEcC--CCEEEEEEecCCeEEEEEECCCC-cccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHH
Confidence 11 12233456 34433322 22 467777777 9999875211 11111111 1223699999999999
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHH-HH---hc----cCCeeEEEEcCC
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQ-MI---NA----FGGFDLVIGGSP 529 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~-~~---~~----~g~~DlliGGpP 529 (569)
++.+.+.. +.|+++|+++.+++.++.|...++..+..++.+|+.++....... .+ +. ...+|+|+.+||
T Consensus 212 sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 212 SLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred HHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCC
Confidence 99998875 379999999999999999987666656678889987765321100 00 00 013799999999
Q ss_pred C
Q 008350 530 C 530 (569)
Q Consensus 530 C 530 (569)
=
T Consensus 289 R 289 (353)
T TIGR02143 289 R 289 (353)
T ss_pred C
Confidence 4
No 17
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.13 E-value=5.2e-06 Score=73.14 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=61.5
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
+.+|+|+|||.|.+.+.+.+.| . ..++++|+++.+++..+.++..... ....++.+|+.++.. .+ ..+.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~-----~~~~~D 72 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-PL-----PDGKFD 72 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-TC-----TTT-EE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-hc-----cCceeE
Confidence 3579999999999999999998 2 5799999999999999988765433 245677888876651 11 126899
Q ss_pred EEEEcCCCCcc
Q 008350 523 LVIGGSPCNNL 533 (569)
Q Consensus 523 lliGGpPCQ~f 533 (569)
+|++.||.-+.
T Consensus 73 ~Iv~npP~~~~ 83 (117)
T PF13659_consen 73 LIVTNPPYGPR 83 (117)
T ss_dssp EEEE--STTSB
T ss_pred EEEECCCCccc
Confidence 99999999654
No 18
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=3.5e-06 Score=92.23 Aligned_cols=108 Identities=19% Similarity=0.116 Sum_probs=88.9
Q ss_pred ccceeeccCCCCccccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCcee
Q 008350 394 DEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMK 469 (569)
Q Consensus 394 ~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k 469 (569)
-++.-+.| +.++++...+.++|+++-. |||+|+. .|.........+.+-.++|+|||.|.+++++++.- +
T Consensus 333 ~~~~l~~~--~~~I~E~l~~ltF~iSp~A-FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~ 406 (534)
T KOG2187|consen 333 KPLQLVGG--DPYITESLLGLTFRISPGA-FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---K 406 (534)
T ss_pred CCeEEEcc--ccEEEeecCCeEEEECCch-hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---c
Confidence 35666666 6688888999999999998 9999987 36655555666777789999999999999998754 5
Q ss_pred EEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccc
Q 008350 470 NVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLD 507 (569)
Q Consensus 470 ~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~ 507 (569)
.|.++|+++.|+..++.|...++..+..+++|-.+++-
T Consensus 407 ~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~ 444 (534)
T KOG2187|consen 407 RVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444 (534)
T ss_pred ceeeeecChhhcchhhhcchhcCccceeeeecchhhcc
Confidence 79999999999999998888788888888888555554
No 19
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=2.1e-05 Score=83.45 Aligned_cols=126 Identities=19% Similarity=0.247 Sum_probs=91.9
Q ss_pred ccceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEe
Q 008350 394 DEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVS 473 (569)
Q Consensus 394 ~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~a 473 (569)
.+++-|.|.+...|-....+-.+++-.-.=+|.. .....-..+......+-+|+|+|||+|-|++.+...|-. + |+|
T Consensus 140 ~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsp-rl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A 216 (341)
T COG2520 140 PRLEVLAGERRTETIHRENGCRFKVDVAKVYFSP-RLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRP-K-VYA 216 (341)
T ss_pred cceEEeecCCCceEEEecCCEEEEEchHHeEECC-CchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCc-e-EEE
Confidence 3688899977666665555555555444434433 223333344455666899999999999999999999953 3 999
Q ss_pred eccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 474 VDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 474 vEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
+|+|+.|.+-++.|...+...+ ..++++|.+++..+. +.+|=|+.|-|=
T Consensus 217 ~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--------~~aDrIim~~p~ 266 (341)
T COG2520 217 IDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--------GVADRIIMGLPK 266 (341)
T ss_pred EecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--------ccCCEEEeCCCC
Confidence 9999999999999987665555 457899999887532 578999999883
No 20
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.98 E-value=1.5e-05 Score=81.24 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=61.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
..+++|||||.|.+++.+.+..-. ..|+++|+++.|.+..+.|...++ ..++.+|+.+.....+ .+.+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~------~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTAL------RGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhc------CCCEeE
Confidence 458999999999999998764211 258999999999999998875433 3567888865432221 147999
Q ss_pred EEEcCCCCcccc
Q 008350 524 VIGGSPCNNLAG 535 (569)
Q Consensus 524 liGGpPCQ~fS~ 535 (569)
|+..|||.+.+.
T Consensus 157 Vv~NPPy~~~~~ 168 (251)
T TIGR03704 157 LAANAPYVPTDA 168 (251)
T ss_pred EEECCCCCCchh
Confidence 999999997654
No 21
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.97 E-value=1.6e-05 Score=77.39 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=54.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||||||.|.+.+=.-.-|. +.|+.||.+..|+++.+.|....+..+ ..++.+|+..... +.......+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~----~~~~~~~~f 115 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLL----KLAKKGEKF 115 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHH----HHHHCTS-E
T ss_pred CCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHH----hhcccCCCc
Confidence 367899999999998874445565 579999999999999999987766543 4456666654432 222234689
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|..+||=
T Consensus 116 DiIflDPPY 124 (183)
T PF03602_consen 116 DIIFLDPPY 124 (183)
T ss_dssp EEEEE--ST
T ss_pred eEEEECCCc
Confidence 999999994
No 22
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.93 E-value=1.1e-05 Score=77.35 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=56.6
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC-eeE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG-FDL 523 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~-~Dl 523 (569)
+|+|+|||+||=++.|.+.+ +.|+|+|+++..++.++.|....+. ....++++|..++....-. .. +|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~------~~~~D~ 72 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS------NKIFDV 72 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------------SE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc------cccccE
Confidence 58999999999999999996 5799999999999999998776642 2456788888876533211 12 799
Q ss_pred EEEcCCCCccccCC
Q 008350 524 VIGGSPCNNLAGSN 537 (569)
Q Consensus 524 liGGpPCQ~fS~ag 537 (569)
|..+||=-|.+-..
T Consensus 73 vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 73 VFLSPPWGGPSYSK 86 (163)
T ss_dssp EEE---BSSGGGGG
T ss_pred EEECCCCCCccccc
Confidence 99999987755544
No 23
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.92 E-value=1.4e-05 Score=78.91 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=58.5
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+|+|||||.|.+++.+...|. ..|.++|+++.+++.++.|...++..+..++++|+.+... . ..+.+|+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----~---~~~~fDl 124 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----Q---PGTPHNV 124 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----h---cCCCceE
Confidence 46899999999999985433343 4799999999999999999876665556677888764331 1 1135999
Q ss_pred EEEcCC
Q 008350 524 VIGGSP 529 (569)
Q Consensus 524 liGGpP 529 (569)
|+..||
T Consensus 125 V~~DPP 130 (199)
T PRK10909 125 VFVDPP 130 (199)
T ss_pred EEECCC
Confidence 999999
No 24
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.86 E-value=4.3e-05 Score=74.65 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=61.3
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
+-+|+|||||.|.+.+.+...|- ..|++||+++.|++..+.|+..++.. ...++.+|+.+... .+......+|
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~----~~~~~~~~~d 123 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALK----FLAKKPTFDN 123 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHH----HhhccCCCce
Confidence 56799999999999999988886 47999999999999999988766543 34567788754431 1111112479
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+..||=.
T Consensus 124 vv~~DPPy~ 132 (189)
T TIGR00095 124 VIYLDPPFF 132 (189)
T ss_pred EEEECcCCC
Confidence 999999953
No 25
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.86 E-value=3.8e-05 Score=78.70 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+|||.||.++.+.+.--+--.|+++|+++...+.++.|....+..++.+..+|...+.. ..+.+|
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD 142 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD 142 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence 457899999999999998876421112699999999999999988876665555667777765431 124699
Q ss_pred EEEEcCCCCccccC
Q 008350 523 LVIGGSPCNNLAGS 536 (569)
Q Consensus 523 lliGGpPCQ~fS~a 536 (569)
.|+.+|||.+....
T Consensus 143 ~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 143 AILLDAPCSGEGVI 156 (264)
T ss_pred EEEEcCCCCCCccc
Confidence 99999999855443
No 26
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.83 E-value=3.3e-05 Score=83.80 Aligned_cols=82 Identities=28% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+-+|||||||+|++++.+...|. ..|+++|+++.+.+..+.|+..++.. ...++.+|+.++..+ +....+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~----~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT----YRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH----HHhcCCC
Confidence 457899999999999987666664 47999999999999999998766553 356788898766422 1112247
Q ss_pred eeEEEEcCCC
Q 008350 521 FDLVIGGSPC 530 (569)
Q Consensus 521 ~DlliGGpPC 530 (569)
||+|+..||+
T Consensus 294 fDlVilDPP~ 303 (396)
T PRK15128 294 FDVIVMDPPK 303 (396)
T ss_pred CCEEEECCCC
Confidence 9999999997
No 27
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.8e-05 Score=73.18 Aligned_cols=73 Identities=33% Similarity=0.383 Sum_probs=63.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-+|+||-||+|-+++|..-+|- ..|.++|+|+.|.++.+.|... +.....+.++||+++. +++|.
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~-----------~~~dt 111 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR-----------GKFDT 111 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----------Cccce
Confidence 44699999999999999999996 5899999999999999998765 3445778889998887 57899
Q ss_pred EEEcCCC
Q 008350 524 VIGGSPC 530 (569)
Q Consensus 524 liGGpPC 530 (569)
++..||-
T Consensus 112 vimNPPF 118 (198)
T COG2263 112 VIMNPPF 118 (198)
T ss_pred EEECCCC
Confidence 9999995
No 28
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.62 E-value=7.8e-05 Score=86.47 Aligned_cols=82 Identities=22% Similarity=0.194 Sum_probs=65.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+-+|||||||.|++++.+.+.|. +.|+++|+++.|++..+.|+..++.. ...++.+|+.++... + .+.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-~------~~~ 608 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-A------REQ 608 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH-c------CCC
Confidence 356899999999999999999885 46999999999999999998766553 356778888664321 1 257
Q ss_pred eeEEEEcCCCCcc
Q 008350 521 FDLVIGGSPCNNL 533 (569)
Q Consensus 521 ~DlliGGpPCQ~f 533 (569)
||+|+..||+-..
T Consensus 609 fDlIilDPP~f~~ 621 (702)
T PRK11783 609 FDLIFIDPPTFSN 621 (702)
T ss_pred cCEEEECCCCCCC
Confidence 9999999998653
No 29
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.61 E-value=0.00013 Score=80.33 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=66.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|++||.||.++.+.+..-.-..|+++|+++...+..+.|....+..++.++++|+.++.. ...||
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~fD 320 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQPD 320 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCCC
Confidence 457899999999999987765311112699999999999999888876665555677888877642 14699
Q ss_pred EEEEcCCCCccccCCC
Q 008350 523 LVIGGSPCNNLAGSNR 538 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~ 538 (569)
+|+.++||.+.....+
T Consensus 321 ~Vl~D~Pcsg~g~~~r 336 (445)
T PRK14904 321 AILLDAPCTGTGVLGR 336 (445)
T ss_pred EEEEcCCCCCcchhhc
Confidence 9999999988766543
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.61 E-value=0.00019 Score=68.61 Aligned_cols=77 Identities=26% Similarity=0.325 Sum_probs=60.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+++||.||+|.+++.+.+.+-.. .|.++|+++.|.+..+.|+..++..+..++..|+.+-.. .+.+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~-~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~---------~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDA-KVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP---------DGKFD 100 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCE-EEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC---------TTCEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc---------cccee
Confidence 46679999999999999999987653 599999999999999999876655446677778765432 15899
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+..||
T Consensus 101 ~Iv~NPP 107 (170)
T PF05175_consen 101 LIVSNPP 107 (170)
T ss_dssp EEEE---
T ss_pred EEEEccc
Confidence 9999999
No 31
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.60 E-value=0.00026 Score=74.77 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+++|.|||.|++.+.+...|. .++++|+++.+....+.|....+..+..+..+|+.++... .+.+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~ 249 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV 249 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence 4567899999999999887777774 5899999999998888887766665556778898876532 1479
Q ss_pred eEEEEcCCCCccc
Q 008350 522 DLVIGGSPCNNLA 534 (569)
Q Consensus 522 DlliGGpPCQ~fS 534 (569)
|+|+..|||...+
T Consensus 250 D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 250 DAIATDPPYGRST 262 (329)
T ss_pred CEEEECCCCcCcc
Confidence 9999999996443
No 32
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.60 E-value=0.00011 Score=79.43 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=60.0
Q ss_pred CcceeccccChhHHHHHHHH-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHR-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
..+++|+|||+|.+++.+.. .|. ..|+++|+++.|++..+.|...++..+..++++|+..+... .+.+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--------~~~fD 127 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--------ERKFD 127 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--------cCCCC
Confidence 36899999999999998855 453 47999999999999999998766665555777787655321 14699
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+..||
T Consensus 128 ~V~lDP~ 134 (382)
T PRK04338 128 VVDIDPF 134 (382)
T ss_pred EEEECCC
Confidence 9999998
No 33
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.52 E-value=0.00021 Score=78.37 Aligned_cols=91 Identities=22% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|++||.||.++.+.+..-.-..|+++|+++...+.++.|....+..++.++++|++++.... .. ..+.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-~~---~~~~f 326 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK-PQ---WRGYF 326 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc-cc---ccccC
Confidence 346789999999999999887752111269999999999999998887766666677888887764210 00 01479
Q ss_pred eEEEEcCCCCccccC
Q 008350 522 DLVIGGSPCNNLAGS 536 (569)
Q Consensus 522 DlliGGpPCQ~fS~a 536 (569)
|.|+.++||.+....
T Consensus 327 D~Vl~DaPCSg~G~~ 341 (434)
T PRK14901 327 DRILLDAPCSGLGTL 341 (434)
T ss_pred CEEEEeCCCCccccc
Confidence 999999999874443
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.49 E-value=0.00025 Score=66.02 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=65.3
Q ss_pred CCcceeccccChhHHHHHHH-HcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALH-RLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~-~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+..+||||-||.|.+...+. +.+.. ..++++|+++.+++.++.++...+.++..++.+|+.++... +. +.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~-~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPG-AKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTT-SEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCC-CEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence 46889999999999999999 55433 35999999999999998877767777788999999996633 22 479
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+...++.
T Consensus 75 D~I~~~~~l~ 84 (152)
T PF13847_consen 75 DIIISNGVLH 84 (152)
T ss_dssp EEEEEESTGG
T ss_pred eEEEEcCchh
Confidence 9999998883
No 35
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.49 E-value=0.00026 Score=77.63 Aligned_cols=88 Identities=24% Similarity=0.410 Sum_probs=67.0
Q ss_pred CCCcceeccccChhHHHHHHHHcC-CceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG-VRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG-i~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||++||.||.++.+.+.- -. ..|+|+|+++...+..+.|....+..++.+..+|..++.. ... +.
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-~~~------~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-YVQ------DT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-hhh------cc
Confidence 345789999999999998877641 11 2699999999999999988877666555677788876541 111 47
Q ss_pred eeEEEEcCCCCccccCC
Q 008350 521 FDLVIGGSPCNNLAGSN 537 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ag 537 (569)
||.|+..+||.++....
T Consensus 308 fD~Vl~DaPCsg~G~~~ 324 (431)
T PRK14903 308 FDRILVDAPCTSLGTAR 324 (431)
T ss_pred CCEEEECCCCCCCcccc
Confidence 99999999998876544
No 36
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.46 E-value=4.6e-05 Score=78.54 Aligned_cols=52 Identities=25% Similarity=0.413 Sum_probs=42.4
Q ss_pred ccCCCeeeEeccccCCCc----chHHhhhhc----ccCCCceechhhc-chhhhccccccc
Q 008350 246 AAGPPYFYYENVALAPKG----VWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVHN 297 (569)
Q Consensus 246 ~~~p~~f~~~nv~~~~~~----~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyihn 297 (569)
..+|.||++|||..+-+. +|..|-..| |.|....+||++| .||+|+|.||=-
T Consensus 100 ~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ~R~R~fivg 160 (335)
T PF00145_consen 100 ELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLNAADYGVPQNRERVFIVG 160 (335)
T ss_dssp HHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSBE-EEEEEEE
T ss_pred hccceEEEecccceeeccccccccccccccccccceeehhccccHhhCCCCCceeeEEEEE
Confidence 467999999999988775 567777766 7899999999999 999999999843
No 37
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.44 E-value=0.00029 Score=77.46 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=66.0
Q ss_pred CCcceeccccChhHHHHHHHHcC-CceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLG-VRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aG-i~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+-+|+|++||.|+.++.+.+.. -. ..|+++|+++.+.+..+.|....+..+..++.+|+.++.. .+. +.+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~~------~~f 321 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KFA------EKF 321 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hhc------ccC
Confidence 45689999999999999887641 11 3699999999999999988776665556678888877641 121 479
Q ss_pred eEEEEcCCCCccccC
Q 008350 522 DLVIGGSPCNNLAGS 536 (569)
Q Consensus 522 DlliGGpPCQ~fS~a 536 (569)
|+|+.+|||.+....
T Consensus 322 D~Vl~D~Pcsg~G~~ 336 (444)
T PRK14902 322 DKILVDAPCSGLGVI 336 (444)
T ss_pred CEEEEcCCCCCCeee
Confidence 999999999876543
No 38
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.39 E-value=0.00041 Score=75.92 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=64.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|++||.|+.++.+.+.+-. ..|+++|+++...+..+.|....+.. ..++++|+.++... .. .+.+|
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-~~-----~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-WD-----GQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-cc-----cCCCC
Confidence 4678999999999999988886532 37999999999999999887765443 45778888765321 11 14699
Q ss_pred EEEEcCCCCcccc
Q 008350 523 LVIGGSPCNNLAG 535 (569)
Q Consensus 523 lliGGpPCQ~fS~ 535 (569)
+|+.+|||.+...
T Consensus 316 ~Vl~D~Pcs~~G~ 328 (427)
T PRK10901 316 RILLDAPCSATGV 328 (427)
T ss_pred EEEECCCCCcccc
Confidence 9999999987443
No 39
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00046 Score=67.52 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=59.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+-++||||||.|++.+=...-|. ..++.||.+..|+.+++.|....+ .....++..|..... .+ ....+.|
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L----~~-~~~~~~F 115 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL----KQ-LGTREPF 115 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH----Hh-cCCCCcc
Confidence 467899999999997764444454 579999999999999999977665 344556777776332 11 1122359
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|..+||=.
T Consensus 116 DlVflDPPy~ 125 (187)
T COG0742 116 DLVFLDPPYA 125 (187)
T ss_pred cEEEeCCCCc
Confidence 9999999976
No 40
>PHA03412 putative methyltransferase; Provisional
Probab=97.35 E-value=0.00043 Score=70.21 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=69.7
Q ss_pred eccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCC--ceeEEEeeccCHHHHHHHHHHHhhcCCCC
Q 008350 418 YKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGV--RMKNVVSVDISEVNRNIVRSWWEQTNQKG 495 (569)
Q Consensus 418 ~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi--~~k~V~avEid~~A~~t~~~n~~~~N~~~ 495 (569)
.+..|.||....++...... . ..+.+|+|+.||.|.+.+.+.+... +...|.++|+++.+.+..+.| .+.
T Consensus 27 ~~~~GqFfTP~~iAr~~~i~-~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-----~~~ 98 (241)
T PHA03412 27 NSELGAFFTPIGLARDFTID-A--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-----VPE 98 (241)
T ss_pred cccCCccCCCHHHHHHHHHh-c--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-----ccC
Confidence 36667678766665443221 1 1357899999999999998876310 013699999999999888754 345
Q ss_pred cccccccccccchhhHHHHHhccCCeeEEEEcCCCCccc
Q 008350 496 TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLA 534 (569)
Q Consensus 496 ~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS 534 (569)
..++.+|+..... . +.+|+||+-||=-...
T Consensus 99 ~~~~~~D~~~~~~---~------~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 99 ATWINADALTTEF---D------TLFDMAISNPPFGKIK 128 (241)
T ss_pred CEEEEcchhcccc---c------CCccEEEECCCCCCcc
Confidence 6678888875431 1 4799999999965533
No 41
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.32 E-value=0.00036 Score=72.63 Aligned_cols=83 Identities=33% Similarity=0.333 Sum_probs=59.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+-+||+|||=.|||++.....|- +.|++||.+..|.+..+.|+..++.. ...++.+|+-+...+ +. +.+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~----~~~~ 195 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LK----KGGR 195 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HH----HTT-
T ss_pred CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-Hh----cCCC
Confidence 467899999999999999989885 57999999999999999998766543 334677888765432 22 3468
Q ss_pred eeEEEEcCCCCccc
Q 008350 521 FDLVIGGSPCNNLA 534 (569)
Q Consensus 521 ~DlliGGpPCQ~fS 534 (569)
+|+||..|| .|+
T Consensus 196 fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 196 FDLIILDPP--SFA 207 (286)
T ss_dssp EEEEEE--S--SEE
T ss_pred CCEEEECCC--CCC
Confidence 999999999 454
No 42
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.27 E-value=0.00042 Score=50.05 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=30.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETL 83 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~L 83 (569)
...+.+|+.|||+++.+.+|+..||. |++..++.|
T Consensus 3 ~~~v~~L~~mGf~~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEMGFSREQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHhC
Confidence 46789999999999999999999998 789988876
No 43
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0011 Score=68.94 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=58.8
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVI 525 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dlli 525 (569)
+|+||.||.|-+++++...+-. -.|+++|+++.|++..+.|...++.....++.+|.- +.+. +.+|+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf----~~~~------~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDLF----EPLR------GKFDLIV 181 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc----cccC------CceeEEE
Confidence 7999999999999999998754 379999999999999999987665422222222221 1111 5899999
Q ss_pred EcCCCCccc
Q 008350 526 GGSPCNNLA 534 (569)
Q Consensus 526 GGpPCQ~fS 534 (569)
.-||=-+.+
T Consensus 182 sNPPYip~~ 190 (280)
T COG2890 182 SNPPYIPAE 190 (280)
T ss_pred eCCCCCCCc
Confidence 999987766
No 44
>PHA03411 putative methyltransferase; Provisional
Probab=97.20 E-value=0.00068 Score=70.18 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=68.6
Q ss_pred ccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccc
Q 008350 421 LGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDF 500 (569)
Q Consensus 421 lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~ 500 (569)
.|-||....+++++. .... ..-+|+|++||+|.+.+.+.+..-. ..|+++|+++.+.+..+.+ .++..++.
T Consensus 45 ~G~FfTP~~i~~~f~-~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n-----~~~v~~v~ 115 (279)
T PHA03411 45 SGAFFTPEGLAWDFT-IDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRL-----LPEAEWIT 115 (279)
T ss_pred ceeEcCCHHHHHHHH-hccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHh-----CcCCEEEE
Confidence 366887777776652 2222 2458999999999998877553211 3689999999998877754 34566788
Q ss_pred ccccccchhhHHHHHhccCCeeEEEEcCCCCcccc
Q 008350 501 ADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAG 535 (569)
Q Consensus 501 ~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ 535 (569)
+|+.++.. ...+|+|++.||-.....
T Consensus 116 ~D~~e~~~---------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 116 SDVFEFES---------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred Cchhhhcc---------cCCCcEEEEcCCccccCc
Confidence 88876542 147999999999876433
No 45
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.00027 Score=74.34 Aligned_cols=44 Identities=32% Similarity=0.517 Sum_probs=38.9
Q ss_pred eccCccccCCcccceeeccCCCCccccCCcccceeecccccccccc
Q 008350 383 VGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVD 428 (569)
Q Consensus 383 vg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvn 428 (569)
+++...+.|++.|..+|+|||++|.+. ++.+..++++||++.+.
T Consensus 263 ~hp~~~R~lT~RE~aRLQ~FPd~f~f~--~s~~~~~~qiGNAVPp~ 306 (315)
T TIGR00675 263 VHPGRIRRLTPRECARLQGFPDDFKFP--VSDSQLYKQAGNAVVVP 306 (315)
T ss_pred ccCCceeeCCHHHHHHHcCCCcccEeC--CCHHHHHhhhCCcccHH
Confidence 567777999999999999999999884 78899999999998875
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.20 E-value=0.00086 Score=69.61 Aligned_cols=81 Identities=19% Similarity=0.141 Sum_probs=61.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
..+|+|++||.|.+.+.+.+..-. ..|+++|+++.+++..+.|...++.. ...++.+|+.+.. + .+.+|
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~-~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~----~-----~~~fD 191 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPE-AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL----P-----GRKYD 191 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----C-----CCCcc
Confidence 468999999999999999886422 26899999999999999887655443 2456778875321 1 13699
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..||+...+
T Consensus 192 ~Iv~NPPy~~~~ 203 (284)
T TIGR03533 192 LIVSNPPYVDAE 203 (284)
T ss_pred EEEECCCCCCcc
Confidence 999999997654
No 47
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.19 E-value=0.00046 Score=74.43 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=59.5
Q ss_pred CcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 444 GINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+++|||+|||+|..++-+... |. +.|+++|+++.|++..+.|...++..+..++++|+..+.... ...+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~-------~~~f 115 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR-------NRKF 115 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh-------CCCC
Confidence 479999999999998877664 65 579999999999999999986555444567777776664221 1468
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|...|+
T Consensus 116 DvIdlDPf 123 (374)
T TIGR00308 116 HVIDIDPF 123 (374)
T ss_pred CEEEeCCC
Confidence 99999997
No 48
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.17 E-value=0.00027 Score=78.22 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=37.1
Q ss_pred CccccCCcccceeeccCC--CCccccCCcccceeeccccccccccch
Q 008350 386 NKLAPLEPDEVEMLLGFP--KNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 386 ~~~~~l~~~e~E~l~GfP--~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
.+.+.|+|.|+.+|+||| ..+.+...++.+..++++||++.|+.+
T Consensus 399 ~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv 445 (467)
T PRK10458 399 HRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVF 445 (467)
T ss_pred CCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHH
Confidence 456899999999999994 545555567889999999999998765
No 49
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.00025 Score=74.98 Aligned_cols=174 Identities=22% Similarity=0.251 Sum_probs=94.1
Q ss_pred ccCCCeeeEeccccCCCc---chHHhhhhc----ccCCCceechhhc-chhhhcccccc-----ccCCCCCCC--CCCCC
Q 008350 246 AAGPPYFYYENVALAPKG---VWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVH-----NLPIKNRHH--LVPLP 310 (569)
Q Consensus 246 ~~~p~~f~~~nv~~~~~~---~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyih-----nlp~~~r~~--~~p~~ 310 (569)
..+|.||++|||..|-.. .|+.|.+-| |+++...+||++| -||+|+|-||. ++-.+..-. .....
T Consensus 106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~~~~~~~~ 185 (328)
T COG0270 106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVLPPLPLGR 185 (328)
T ss_pred hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCccccccccccCcccccc
Confidence 456899999999999886 888877776 5566777887755 68999999999 665553211 00001
Q ss_pred cccHHhhch-----hhhccCCC-----CCccC-CcccceeeccchhHHHHHHhhhhccCCCCCCCccchh-HHHhhh---
Q 008350 311 PQNIYEALP-----LSRKWWPS-----WDTRS-HLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQK-FVMDEC--- 375 (569)
Q Consensus 311 p~tI~ealp-----~~r~~~p~-----~d~r~-~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~-~il~~c--- 375 (569)
..++.+++- .+...+.. .+.+. ..+...+..... ..+ ..+..... ..... ..+..-
T Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~----~~~~~~~rl~~~~~~ 256 (328)
T COG0270 186 KKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKNKGERLPSLR-WGE----ALTLSRRY----KGKGSYIRLHPDKPA 256 (328)
T ss_pred ccchhhhhhhccCcchhhhhccccccccccccCchhhhccccccc-ccc----cccccccc----CCCceeEeCCCCCCC
Confidence 122222221 11111111 11110 000000000000 000 00000000 00000 001110
Q ss_pred ----cccceeeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 376 ----RKWNLVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 376 ----k~~nlvwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
-..+-..+++...+.|.+.|..+++|||++|.... +.+..++++||+..+...
T Consensus 257 ~t~~~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~ 313 (328)
T COG0270 257 PTVRGGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLA 313 (328)
T ss_pred ceeecCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHH
Confidence 11244456677777888999999999999998864 999999999998877544
No 50
>PRK14967 putative methyltransferase; Provisional
Probab=97.10 E-value=0.0016 Score=64.71 Aligned_cols=79 Identities=28% Similarity=0.283 Sum_probs=59.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|++||.|.+++.+.+.|. ..++++|+++.+.+..+.|....+. ...++.+|+.+.. . .+.+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~----~-----~~~f 102 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV----E-----FRPF 102 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc----c-----CCCe
Confidence 3457899999999999999888774 4789999999999888877654433 3456667765432 1 1479
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+..||-..
T Consensus 103 D~Vi~npPy~~ 113 (223)
T PRK14967 103 DVVVSNPPYVP 113 (223)
T ss_pred eEEEECCCCCC
Confidence 99999987543
No 51
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.08 E-value=0.002 Score=64.34 Aligned_cols=83 Identities=24% Similarity=0.224 Sum_probs=63.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+++|+.||.|.+...+.+..-. ..++++|+++.+.+..+.+....+..+..++.+|+.+... .+.+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP---------GGKFD 156 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc---------CCcee
Confidence 4568999999999999999886322 3689999999999988888765555456677888765321 15799
Q ss_pred EEEEcCCCCcccc
Q 008350 523 LVIGGSPCNNLAG 535 (569)
Q Consensus 523 lliGGpPCQ~fS~ 535 (569)
+|++.||+...+.
T Consensus 157 ~Vi~npPy~~~~~ 169 (251)
T TIGR03534 157 LIVSNPPYIPEAD 169 (251)
T ss_pred EEEECCCCCchhh
Confidence 9999999886553
No 52
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=97.08 E-value=0.001 Score=47.96 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.3
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
.+.++.|+.|||+++.|..|+..++. |.+..++.|+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~-d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNN-NVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHh
Confidence 35689999999999999999999998 7788899886
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.07 E-value=0.0017 Score=62.28 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=60.2
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-+++|+.||.|.++..+.+.|. .|+++|+++.+.+..+.|...++ ....++.+|+.+.. . +.+|+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~----~------~~fD~ 85 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNN-VGLDVVMTDLFKGV----R------GKFDV 85 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcC-CceEEEEccccccc----C------CcccE
Confidence 45799999999999999999884 69999999999998888765433 34456677765532 1 47999
Q ss_pred EEEcCCCCccc
Q 008350 524 VIGGSPCNNLA 534 (569)
Q Consensus 524 liGGpPCQ~fS 534 (569)
|+.+||+....
T Consensus 86 Vi~n~p~~~~~ 96 (179)
T TIGR00537 86 ILFNPPYLPLE 96 (179)
T ss_pred EEECCCCCCCc
Confidence 99999997554
No 54
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.04 E-value=0.0028 Score=68.53 Aligned_cols=126 Identities=25% Similarity=0.407 Sum_probs=84.4
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHH-----------hcccccC--------CCCC-----hhHHHHHHHhCC
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALL-----------KHSASSS--------ASSS-----KSKLIDHFVGMG 58 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll-----------~~~~~~~--------~~ss-----~~~~~~~~~~MG 58 (569)
+-+++|||-+.-...|+.-.-. |+|.-+..+. ++.+.+. +.+. +...+..|++||
T Consensus 308 sllv~mGfeesdaRlaLRsc~g-~Vd~AvqfI~erre~laq~R~k~~a~Ere~~~r~k~~n~~~~~wvn~rs~~rL~~mG 386 (568)
T KOG2561|consen 308 SLLVGMGFEESDARLALRSCNG-DVDSAVQFIIERREKLAQKREKDLAREREILERKKYGNTPMKKWVNPRSLERLVSMG 386 (568)
T ss_pred HHHHHcCCCchHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcccccCHHHHHHHHhcc
Confidence 4578999999999999988744 7776555554 2222221 1111 223366999999
Q ss_pred CCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHH
Q 008350 59 FSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKL 138 (569)
Q Consensus 59 F~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~ 138 (569)
|....|..|+++.-. +....|+.|-+-+. +..++ ..... ......++
T Consensus 387 yer~la~eaL~r~~N-di~~aldllq~esd------------------el~~n-------------~~~~p-~~vd~~~l 433 (568)
T KOG2561|consen 387 YERELAAEALRRNEN-DIQKALDLLQDESD------------------ELESN-------------KPKRP-EQVDGISL 433 (568)
T ss_pred hHhHHHHHHHHhccC-cHHHHHHhcCCcch------------------hhhcc-------------CCCCC-cccchhhH
Confidence 999999999999765 56788887754111 11000 00000 01124678
Q ss_pred HHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 139 VSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 139 ~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
..||.|||.+--|..|++-.|...
T Consensus 434 a~Lv~mGF~e~~A~~ALe~~gnn~ 457 (568)
T KOG2561|consen 434 AELVSMGFEEGKARSALEAGGNNE 457 (568)
T ss_pred HHHHHhccccchHHHHHHhcCCcH
Confidence 999999999999999999999873
No 55
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=97.04 E-value=0.0014 Score=62.28 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+-+++|++||.|.++..+.+.+ ..++++|+++.+...++.++.. .++..++.+|+.++.... ..+|
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~--------~~~d 79 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPK--------LQPY 79 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccc--------cCCC
Confidence 34689999999999999998885 3699999999999988877542 335667889998875321 2589
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|++.+|=+
T Consensus 80 ~vi~n~Py~ 88 (169)
T smart00650 80 KVVGNLPYN 88 (169)
T ss_pred EEEECCCcc
Confidence 999999854
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.03 E-value=0.0012 Score=69.30 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=60.8
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCeeE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
.+++|++||.|.+++.+.+..-. ..|+++|+++.+.+..+.|....+.. ...++++|+.+.. + .+.+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----~-----~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----P-----GRRYDL 204 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC----C-----CCCccE
Confidence 58999999999999999876422 36899999999999999887655543 2556777775422 1 136999
Q ss_pred EEEcCCCCccc
Q 008350 524 VIGGSPCNNLA 534 (569)
Q Consensus 524 liGGpPCQ~fS 534 (569)
|+..||+-+..
T Consensus 205 IvsNPPyi~~~ 215 (307)
T PRK11805 205 IVSNPPYVDAE 215 (307)
T ss_pred EEECCCCCCcc
Confidence 99999987643
No 57
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=97.02 E-value=0.0011 Score=47.62 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 49 KLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 49 ~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
..+..|+.|||+++.+..|+..||. |.+..++.|+
T Consensus 3 ~~v~~L~~mGf~~~~a~~aL~~~~~-d~~~A~~~L~ 37 (37)
T smart00165 3 EKIDQLLEMGFSREEALKALRAANG-NVERAAEYLL 37 (37)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHC
Confidence 5688999999999999999999998 4788888774
No 58
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.02 E-value=0.0021 Score=66.46 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=61.4
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
.+|+|++||.|.+.+.+....-. ..|+++|+++.+.+..+.|....+..+ ..++.+|+.+.. . ...+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~-~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----~-----~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN-AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----A-----GQKIDI 185 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC----c-----CCCccE
Confidence 58999999999999999886432 368999999999999998876554433 556777775422 1 026999
Q ss_pred EEEcCCCCcccc
Q 008350 524 VIGGSPCNNLAG 535 (569)
Q Consensus 524 liGGpPCQ~fS~ 535 (569)
|+..||.-..+.
T Consensus 186 IvsNPPyi~~~~ 197 (284)
T TIGR00536 186 IVSNPPYIDEED 197 (284)
T ss_pred EEECCCCCCcch
Confidence 999999987653
No 59
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.01 E-value=0.0019 Score=70.63 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccc--ccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLI--DFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~--~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+|+|++||.||.++.+.+..-. -.|+++|+++...+..+.|....+.. ..+ ..+|......- . ..+.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~-~-----~~~~ 309 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW-A-----ENEQ 309 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecccccccccc-c-----cccc
Confidence 4578999999999999988774212 36999999999999999887665443 222 44555433210 0 1257
Q ss_pred eeEEEEcCCCCccccCCC
Q 008350 521 FDLVIGGSPCNNLAGSNR 538 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ag~ 538 (569)
||.|+.++||.++...++
T Consensus 310 fD~VllDaPcSg~G~~~~ 327 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRR 327 (426)
T ss_pred cCEEEEcCCCCCCccccc
Confidence 999999999998876553
No 60
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.99 E-value=0.0011 Score=71.72 Aligned_cols=102 Identities=31% Similarity=0.297 Sum_probs=75.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccchhhHHHHHhccCCe
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+-+||+|||=.|||++.....|- ..|.+||++..|....+.|+.-+++.. ..++++|+-++..+... +...+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~----~g~~f 291 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER----RGEKF 291 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----cCCcc
Confidence 66799999999999999999996 479999999999999999988776644 34788888877643322 23489
Q ss_pred eEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHH
Q 008350 522 DLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDL 561 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~ 561 (569)
|||+..|| .|+...+ + . -.....|.+++..
T Consensus 292 DlIilDPP--sF~r~k~----~---~-~~~~rdy~~l~~~ 321 (393)
T COG1092 292 DLIILDPP--SFARSKK----Q---E-FSAQRDYKDLNDL 321 (393)
T ss_pred cEEEECCc--ccccCcc----c---c-hhHHHHHHHHHHH
Confidence 99999999 3544221 1 1 3455666665543
No 61
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0013 Score=61.87 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=61.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+++||-||+|-++.|+...+- +.|.++||++.|.+++..|...... ...+++.||.++.... +-+|.
T Consensus 49 gkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~--------g~fDt 117 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKG--------GIFDT 117 (185)
T ss_pred CcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccC--------CeEee
Confidence 56799999999999999988875 6899999999999999988765422 2346778887776432 57999
Q ss_pred EEEcCCC
Q 008350 524 VIGGSPC 530 (569)
Q Consensus 524 liGGpPC 530 (569)
.+..||-
T Consensus 118 aviNppF 124 (185)
T KOG3420|consen 118 AVINPPF 124 (185)
T ss_pred EEecCCC
Confidence 9999984
No 62
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.86 E-value=0.0028 Score=69.26 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+...+++|++||.|.+++.+.+..-. ..++++|+++.+.+..+.|....+. ...++.+|+.+... . ..+.+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l---~----~~~~F 320 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM---P----SEGKW 320 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc---c----cCCCc
Confidence 34458999999999999988764222 3689999999999999988765432 45577788754321 1 11469
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+..||=
T Consensus 321 DLIVSNPPY 329 (423)
T PRK14966 321 DIIVSNPPY 329 (423)
T ss_pred cEEEECCCC
Confidence 999999984
No 63
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0029 Score=64.54 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=62.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+..-+++||.||.|.+.+.+.+.--+ ..+.+||+++.+.+-++.|...++.. ...++++||.++..... ...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~------~~~ 115 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV------FAS 115 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc------ccc
Confidence 34788999999999999999887333 36899999999998888776543222 34577888888764321 246
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
||+|+.-||=-
T Consensus 116 fD~Ii~NPPyf 126 (248)
T COG4123 116 FDLIICNPPYF 126 (248)
T ss_pred cCEEEeCCCCC
Confidence 99999999954
No 64
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.74 E-value=0.0029 Score=70.31 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||++||.||=+..+...--.--.++|+|+++.-.+.++.|....+..++.+...|.+.+.. .+. +.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-~~~------~~f 184 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-ALP------ETF 184 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-hch------hhc
Confidence 3567899999999999988876411112699999999999999999887777666677777776542 122 469
Q ss_pred eEEEEcCCCCccccCC
Q 008350 522 DLVIGGSPCNNLAGSN 537 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag 537 (569)
|.|+.+.||.+.-.-.
T Consensus 185 D~ILvDaPCSG~G~~r 200 (470)
T PRK11933 185 DAILLDAPCSGEGTVR 200 (470)
T ss_pred CeEEEcCCCCCCcccc
Confidence 9999999998765443
No 65
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.72 E-value=0.0028 Score=63.37 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=82.0
Q ss_pred hhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccch
Q 008350 430 VAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDA 508 (569)
Q Consensus 430 ~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~ 508 (569)
++.|++.......+...++|-|||+||-+.-+...|- .|+++|+|+.-++..+.|.+..+.+. ..+++||+-++-.
T Consensus 81 ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~ 157 (263)
T KOG2730|consen 81 IAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS 157 (263)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH
Confidence 3444433333333567799999999999999998885 58999999999988888877666665 3478999987753
Q ss_pred hhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhcccc
Q 008350 509 NRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMM 566 (569)
Q Consensus 509 ~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~ 566 (569)
. +. + .+ .-+|++.++||=-+-|-.+. .--.|+..-...+.+..|+--.+-|-+
T Consensus 158 ~-lq-~-~K-~~~~~vf~sppwggp~y~~~-~~~DL~~~~~p~~~~~fk~s~kispnv 210 (263)
T KOG2730|consen 158 K-LK-A-DK-IKYDCVFLSPPWGGPSYLRA-DVYDLETHLKPMGTKIFKSSLKISPNV 210 (263)
T ss_pred H-Hh-h-hh-heeeeeecCCCCCCcchhhh-hhhhhhhhcchhHHHHHHhhhhcCcch
Confidence 2 21 1 11 23789988888665554432 111222222223555555555555544
No 66
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.71 E-value=0.0043 Score=61.42 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=62.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+.||.|.++.-+.+..-+--.|+++|+++...+..+.++...+..+..++.+|..+.... ...+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~--------~~~f 147 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP--------LAPY 147 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc--------cCCC
Confidence 45678999999999999988876421124999999999998888887766665667788888754321 1479
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+.+++|..
T Consensus 148 D~Ii~~~~~~~ 158 (215)
T TIGR00080 148 DRIYVTAAGPK 158 (215)
T ss_pred CEEEEcCCccc
Confidence 99998887654
No 67
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.71 E-value=0.0045 Score=62.88 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+|+|+.||.|.+.+.+....-. ..++++|+++.+.+..+.|.......+..++.+|+.+... .+.+|
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---------~~~fD 177 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---------GGRFD 177 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC---------CCcee
Confidence 4678999999999999999887522 3689999999999988887651222345567777743221 15799
Q ss_pred EEEEcCCCCcccc
Q 008350 523 LVIGGSPCNNLAG 535 (569)
Q Consensus 523 lliGGpPCQ~fS~ 535 (569)
+|+..|||-+.+.
T Consensus 178 ~Iv~npPy~~~~~ 190 (275)
T PRK09328 178 LIVSNPPYIPEAD 190 (275)
T ss_pred EEEECCCcCCcch
Confidence 9999999976543
No 68
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=96.53 E-value=0.0043 Score=44.76 Aligned_cols=35 Identities=34% Similarity=0.607 Sum_probs=27.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHH
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDF 170 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~ 170 (569)
.++++..|+.|||+++++..|+.+||.+ ++.-+++
T Consensus 2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~ 36 (37)
T PF00627_consen 2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDW 36 (37)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHh
Confidence 3578999999999999999999999985 4444443
No 69
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=96.52 E-value=0.0025 Score=50.18 Aligned_cols=37 Identities=38% Similarity=0.655 Sum_probs=28.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCc--------hhHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEEN--------TDSILETLL 84 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~--------~d~~le~Ll 84 (569)
..++++|++|||+.+.|..|+++.|-.. .+.+||.||
T Consensus 10 ~~lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELL 54 (55)
T PF09288_consen 10 KDLVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELL 54 (55)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHh
Confidence 4679999999999999999999998433 468898887
No 70
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.51 E-value=0.0068 Score=63.02 Aligned_cols=91 Identities=25% Similarity=0.348 Sum_probs=67.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|++||.||=+..+.+.-..--.++|+|++...+..++.|....+..+..+...|.+.+...... ..|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~------~~f 157 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE------SKF 157 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT------TTE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc------ccc
Confidence 34577999999999998877775432247999999999999999888777766665555676666533221 259
Q ss_pred eEEEEcCCCCccccCCC
Q 008350 522 DLVIGGSPCNNLAGSNR 538 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag~ 538 (569)
|.|+..+||.+.....+
T Consensus 158 d~VlvDaPCSg~G~i~r 174 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRR 174 (283)
T ss_dssp EEEEEECSCCCGGGTTT
T ss_pred chhhcCCCccchhhhhh
Confidence 99999999999765554
No 71
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.50 E-value=0.0081 Score=61.35 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+-+|+|+-||.|.++..+.+.+. .++++|+++.....++.++.. .++..++++|+.++.. ..+|
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~----------~~~d 93 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL----------PEFN 93 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc----------hhce
Confidence 457899999999999999999863 689999999998888766432 3456688899987652 2469
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
.|++.+|=+
T Consensus 94 ~Vv~NlPy~ 102 (258)
T PRK14896 94 KVVSNLPYQ 102 (258)
T ss_pred EEEEcCCcc
Confidence 999988854
No 72
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.46 E-value=0.0048 Score=44.21 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFI 171 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i 171 (569)
.+++..|+.|||++++|..|+.+||.| ++.-++++
T Consensus 2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEMGFSREEALKALRAANGN--VERAAEYL 36 (37)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHH
Confidence 467899999999999999999999987 44444443
No 73
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.41 E-value=0.0077 Score=49.37 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=56.3
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVI 525 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dlli 525 (569)
+++|+.||.|++...+.+... ..++++|+++.+....+............++.+|+.+.... ..+++|+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-------ADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-------cCCceEEEE
Confidence 589999999999999887332 57999999999887666322222233445666777665430 125799999
Q ss_pred EcCCCCcc
Q 008350 526 GGSPCNNL 533 (569)
Q Consensus 526 GGpPCQ~f 533 (569)
..+||..+
T Consensus 72 ~~~~~~~~ 79 (107)
T cd02440 72 SDPPLHHL 79 (107)
T ss_pred Eccceeeh
Confidence 99999875
No 74
>PRK14968 putative methyltransferase; Provisional
Probab=96.29 E-value=0.013 Score=55.74 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+-+++|+.||.|.+...+.+.+. .++++|+++.+....+.+....+..+ ..++.+|+.+.. .+ ..
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----~~-----~~ 90 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----RG-----DK 90 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----cc-----cC
Confidence 456799999999999999988863 68999999999888877765443332 445566654322 11 36
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|+|+..||+..
T Consensus 91 ~d~vi~n~p~~~ 102 (188)
T PRK14968 91 FDVILFNPPYLP 102 (188)
T ss_pred ceEEEECCCcCC
Confidence 999999999753
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.24 E-value=0.008 Score=58.24 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCCcceeccccChhHHHHH--HHHcCCc------eeEEEeeccCHHHHHHHHHHHhhcCCCCc-ccccccccccchhhHH
Q 008350 442 PDGINVLSLFSGIGGAEVA--LHRLGVR------MKNVVSVDISEVNRNIVRSWWEQTNQKGT-LIDFADVQQLDANRIE 512 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slG--l~~aGi~------~k~V~avEid~~A~~t~~~n~~~~N~~~~-~~~~~DI~~i~~~~l~ 512 (569)
..+..++|-|||.|++-+= +....+. ...++++|+++.++...+.|....+..+. .+...|++++...
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~--- 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLP--- 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGT---
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccc---
Confidence 4467899999999997763 3333331 00278999999999999998876654432 3556677777611
Q ss_pred HHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHH-hcc
Q 008350 513 QMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDL-VKN 564 (569)
Q Consensus 513 ~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~-vrP 564 (569)
.+.+|+||..||= |. |.+.......||..+++.+.. ++|
T Consensus 104 -----~~~~d~IvtnPPy------G~--r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 104 -----DGSVDAIVTNPPY------GR--RLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -----TSBSCEEEEE--S------TT--SHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred -----cCCCCEEEECcch------hh--hccCHHHHHHHHHHHHHHHHHHCCC
Confidence 1579999999994 32 333222234688888888776 455
No 76
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.23 E-value=0.012 Score=51.02 Aligned_cols=74 Identities=34% Similarity=0.378 Sum_probs=56.2
Q ss_pred CcceeccccChhHHHHHHHH--cCCceeEEEeeccCHHHHHHHHHHHhhc-CCCCcccccccccccchhhHHHHHhccCC
Q 008350 444 GINVLSLFSGIGGAEVALHR--LGVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~--aGi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+-+||||=||.|.+++.+.+ .|. .|+++|+++...+.++.+.... ..++..++++|+ ...... .++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-------~~~ 70 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-------LEP 70 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-------SSC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-------CCC
Confidence 45799999999999999999 675 5999999999999998886322 234566888999 332221 247
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+...
T Consensus 71 ~D~v~~~~ 78 (112)
T PF12847_consen 71 FDLVICSG 78 (112)
T ss_dssp EEEEEECS
T ss_pred CCEEEECC
Confidence 99998876
No 77
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.22 E-value=0.016 Score=50.89 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=55.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+++|+.||.|.+..-+.+..-. ..|+++|+++.+++..+.+....+.++..++.+|+...... .. +.+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~D 90 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-SL------PEPD 90 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-hc------CCCC
Confidence 3568999999999999988775322 36899999999998888776655555556666776643211 11 4789
Q ss_pred EEEEc
Q 008350 523 LVIGG 527 (569)
Q Consensus 523 lliGG 527 (569)
+|+.+
T Consensus 91 ~v~~~ 95 (124)
T TIGR02469 91 RVFIG 95 (124)
T ss_pred EEEEC
Confidence 99874
No 78
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.18 E-value=0.013 Score=62.84 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=69.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCc-eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVR-MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~-~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|+|++|+.||=+.-+.++.-+ -..|+|+|+++.-.+.++.|....+..++.+...|-+.+...... .+.|
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~-----~~~f 230 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG-----GEKF 230 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc-----cCcC
Confidence 4689999999999988888876532 135799999999999999998888777766777777666532211 1249
Q ss_pred eEEEEcCCCCccccCCC
Q 008350 522 DLVIGGSPCNNLAGSNR 538 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag~ 538 (569)
|-|+..+||.+.....+
T Consensus 231 D~iLlDaPCSg~G~irr 247 (355)
T COG0144 231 DRILLDAPCSGTGVIRR 247 (355)
T ss_pred cEEEECCCCCCCccccc
Confidence 99999999998777654
No 79
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=96.11 E-value=0.0025 Score=50.19 Aligned_cols=36 Identities=36% Similarity=0.671 Sum_probs=26.4
Q ss_pred CccccccCCCCHHHHHHHHHHhCCCC--------HHHHHHHHHh
Q 008350 1 MIDHFVGMGFSEEVVAKAIQENGEQN--------TDLILEALLK 36 (569)
Q Consensus 1 ~~~~~~~MGf~~~~v~k~i~e~g~~~--------~~~ile~ll~ 36 (569)
+|++|..|||+.+.|..|++..|=.. .+.|||.||+
T Consensus 12 lVd~F~~mGF~~dkVvevlrrlgik~~n~~dn~t~~~ilEELLk 55 (55)
T PF09288_consen 12 LVDQFENMGFERDKVVEVLRRLGIKSMNGVDNETENKILEELLK 55 (55)
T ss_dssp HHHHHHHHT--HHHHHHHHHHS--SS--SS--HHHHHHHHHHT-
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCccchhHHHHHHHHhC
Confidence 47899999999999999999876443 3489999985
No 80
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.10 E-value=0.014 Score=57.73 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|.+...+.+. |-. ..|+++|+++...+..+.+....+.++..++.+|+.++... .+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 115 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD--------DNSF 115 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC--------CCCc
Confidence 4578999999999999888764 322 36899999999988887776545555566778888765421 1478
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+.+...+.
T Consensus 116 D~V~~~~~l~~ 126 (231)
T TIGR02752 116 DYVTIGFGLRN 126 (231)
T ss_pred cEEEEeccccc
Confidence 99988765543
No 81
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.09 E-value=0.015 Score=57.30 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=59.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccc-cccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADV-QQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI-~~i~~~~l~~~~~~~g~~ 521 (569)
...+|+|+-||.|.++..+.+..-. ..++++|+++.+++..+.+....+.++..++++|+ ..+. ..+. .+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~-~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-~~~~-----~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD-INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-DMFP-----DGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC-ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-HHcC-----cccc
Confidence 4578999999999999998775321 36999999999999888776555445566788888 4332 1111 2569
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+..+|.+
T Consensus 113 D~V~~~~~~p 122 (202)
T PRK00121 113 DRIYLNFPDP 122 (202)
T ss_pred ceEEEECCCC
Confidence 9999876643
No 82
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=96.09 E-value=0.018 Score=60.38 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+-+|+|+-||.|.++..+.+.+- .|+++|+|+..+..++.++...+ .++..++.+|+.++.. ..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~----------~~ 101 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF----------PY 101 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc----------cc
Confidence 3456899999999999999988763 58999999999998887765433 3456688899877542 35
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|+|++.+|=+-
T Consensus 102 ~d~VvaNlPY~I 113 (294)
T PTZ00338 102 FDVCVANVPYQI 113 (294)
T ss_pred cCEEEecCCccc
Confidence 799999888653
No 83
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.018 Score=60.38 Aligned_cols=57 Identities=30% Similarity=0.368 Sum_probs=47.6
Q ss_pred hhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC
Q 008350 434 LSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN 492 (569)
Q Consensus 434 ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N 492 (569)
+..+......+.+|||+=||.|-++++..++|- +.|+++|+|+.|+++.+.|...++
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~ 209 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNG 209 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcC
Confidence 333344445789999999999999999999996 589999999999999999876554
No 84
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.08 E-value=0.011 Score=57.36 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=56.6
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+|+|+-||.|.+++.+...+-. ..|+++|+++.+.+.++.+....+..+..++.+|+.++.. .+.+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence 578999999999988887665432 3599999999988877777665555556788899887631 157999
Q ss_pred EEEc
Q 008350 524 VIGG 527 (569)
Q Consensus 524 liGG 527 (569)
|+..
T Consensus 113 I~s~ 116 (181)
T TIGR00138 113 ITSR 116 (181)
T ss_pred EEeh
Confidence 9875
No 85
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.05 E-value=0.024 Score=61.39 Aligned_cols=76 Identities=20% Similarity=0.076 Sum_probs=55.0
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC---CcccccccccccchhhHHHHHhccCCe
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK---GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~---~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
-+|+||.||.|-+++.+.+.+-. -.|+++|+++.|.+..+.|+..++.. ...++.+|+..-. + .+.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~-----~~~f 299 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----E-----PFRF 299 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----C-----CCCE
Confidence 48999999999999998887532 36899999999999999887544321 2234455543211 1 1479
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+..||.
T Consensus 300 DlIlsNPPf 308 (378)
T PRK15001 300 NAVLCNPPF 308 (378)
T ss_pred EEEEECcCc
Confidence 999999996
No 86
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.05 E-value=0.013 Score=42.09 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFIC 172 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~ 172 (569)
++++..|+.|||+++++..|+.+|+-| ++.-+++|+
T Consensus 2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL 37 (38)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence 467899999999999999999999986 454455543
No 87
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.04 E-value=0.018 Score=55.59 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=54.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
....+|||+.||.|.+++.+.+.+-. ..|.++|+++.+++..+.|....+..+..++.+|+.. .+. +.+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~----~~~------~~~ 98 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI----ELP------GKA 98 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh----hcC------cCC
Confidence 35678999999999999998876532 3699999999999988887665544445566666531 111 468
Q ss_pred eEEEEc
Q 008350 522 DLVIGG 527 (569)
Q Consensus 522 DlliGG 527 (569)
|+++.+
T Consensus 99 D~v~~~ 104 (187)
T PRK08287 99 DAIFIG 104 (187)
T ss_pred CEEEEC
Confidence 999865
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.04 E-value=0.017 Score=56.36 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=60.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
..+++|+-||.|.+...+.+..-. ..++++|+++..+...+.+....+.++..++.+|+.++....+. .+.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~-----~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFP-----DGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCC-----CCceeE
Confidence 457999999999999998887432 36899999999887777666555556677888898775422111 146999
Q ss_pred EEEcCCCC
Q 008350 524 VIGGSPCN 531 (569)
Q Consensus 524 liGGpPCQ 531 (569)
|+..+|..
T Consensus 91 v~~~~pdp 98 (194)
T TIGR00091 91 VFLNFPDP 98 (194)
T ss_pred EEEECCCc
Confidence 99988744
No 89
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.04 E-value=0.01 Score=66.65 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=55.4
Q ss_pred CCcceeccccChhHHHHHHHHcC--------CceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLG--------VRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aG--------i~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~ 514 (569)
...+|+|.+||.|+|-+++.... +. ..++++|+++.+....+.+....+..+..+.++|..........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~-- 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIE-- 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccc--
Confidence 45789999999999998876532 22 46899999999998887765433311222333332211110000
Q ss_pred HhccCCeeEEEEcCCCCcc
Q 008350 515 INAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ~f 533 (569)
...+.+|+|||-||=-..
T Consensus 108 -~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 108 -SYLDLFDIVITNPPYGRL 125 (524)
T ss_pred -cccCcccEEEeCCCcccc
Confidence 012579999999997654
No 90
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.90 E-value=0.018 Score=56.31 Aligned_cols=80 Identities=23% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhcc
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
...+.+|+|+.||.|.+++.+.+. +-. ..|+++|+++.+.+..+.|....+ ..+..++.+|+.+.... + .
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~------~ 109 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-I------N 109 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-c------C
Confidence 345678999999999999987653 322 369999999999988887765544 23445566666543211 1 1
Q ss_pred CCeeEEEEcC
Q 008350 519 GGFDLVIGGS 528 (569)
Q Consensus 519 g~~DlliGGp 528 (569)
+.+|+++.+.
T Consensus 110 ~~~D~V~~~~ 119 (198)
T PRK00377 110 EKFDRIFIGG 119 (198)
T ss_pred CCCCEEEECC
Confidence 5799998854
No 91
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.89 E-value=0.025 Score=57.51 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++..+.+.+- .++++|+++..+..++.++.. .++..++.+|+.++..... ...
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~~-------d~~ 95 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPDF-------PKQ 95 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhHc-------CCc
Confidence 3467899999999999999999883 499999999999888766432 3456678899988764311 112
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
++|++.+|
T Consensus 96 ~~vvsNlP 103 (253)
T TIGR00755 96 LKVVSNLP 103 (253)
T ss_pred ceEEEcCC
Confidence 48888887
No 92
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.88 E-value=0.013 Score=59.40 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT 491 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~ 491 (569)
.+.+|||.=||.|-++..+++.|. .|.++|+++.++.+.+.++...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~ 104 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALES 104 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhc
Confidence 478999999999999999999994 6999999999999999887544
No 93
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.85 E-value=0.021 Score=58.90 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+-||.|.++..+.+.+- .|+++|+++.+...++.++. .++..++.+|+.++....+ ..
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~~--------~~ 106 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKVDLSEL--------QP 106 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcCCHHHc--------Cc
Confidence 3457899999999999999999873 68999999999988876542 2456788999998864321 15
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
+.|+|.+|=
T Consensus 107 ~~vv~NlPY 115 (272)
T PRK00274 107 LKVVANLPY 115 (272)
T ss_pred ceEEEeCCc
Confidence 889999984
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.84 E-value=0.02 Score=61.18 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=55.0
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
-+|+||.||.|.++..+.+.+-. ..|.++|+++.|.+..+.+...++.. ..++..|+... +. +.+|+|
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~----~~------~~fDlI 265 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD----IK------GRFDMI 265 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc----cC------CCccEE
Confidence 47999999999999988876432 25999999999999888877654432 33455565431 11 579999
Q ss_pred EEcCCC
Q 008350 525 IGGSPC 530 (569)
Q Consensus 525 iGGpPC 530 (569)
+..||=
T Consensus 266 vsNPPF 271 (342)
T PRK09489 266 ISNPPF 271 (342)
T ss_pred EECCCc
Confidence 999984
No 95
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.82 E-value=0.026 Score=55.30 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=59.1
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
++.+.+|+|+=||.|.+++.+.+..-. ..|+++|+++.+.+..+.+....+..+..++.+|+.++.. . +.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~------~~ 112 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---E------EK 112 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---C------CC
Confidence 344788999999999999988764222 3699999999998888887766665556778888887653 1 47
Q ss_pred eeEEEEc
Q 008350 521 FDLVIGG 527 (569)
Q Consensus 521 ~DlliGG 527 (569)
+|+|+..
T Consensus 113 fDlV~~~ 119 (187)
T PRK00107 113 FDVVTSR 119 (187)
T ss_pred ccEEEEc
Confidence 9999963
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.80 E-value=0.023 Score=59.66 Aligned_cols=53 Identities=28% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG 495 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~ 495 (569)
...+-+|||+=||.|-++++..++|. +.|+|+|+|+.|+.+.+.|...++...
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 34467999999999999999999997 579999999999999999987655443
No 97
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.80 E-value=0.072 Score=58.03 Aligned_cols=83 Identities=24% Similarity=0.413 Sum_probs=64.9
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc----ccCCCCC--hhHHHHHHHhCCCCHHHHHHHHHHhCCCch
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA----SSSASSS--KSKLIDHFVGMGFSVDMVAKAIQENGEENT 76 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~----~~~~~ss--~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~ 76 (569)
..+++|||..++++.|++.+ +.|...-|+.|-.-+. ..+..++ ....+..|+.|||.+-.+.-|++--|. +.
T Consensus 380 ~rL~~mGyer~la~eaL~r~-~Ndi~~aldllq~esdel~~n~~~~p~~vd~~~la~Lv~mGF~e~~A~~ALe~~gn-n~ 457 (568)
T KOG2561|consen 380 ERLVSMGYERELAAEALRRN-ENDIQKALDLLQDESDELESNKPKRPEQVDGISLAELVSMGFEEGKARSALEAGGN-NE 457 (568)
T ss_pred HHHHhcchHhHHHHHHHHhc-cCcHHHHHHhcCCcchhhhccCCCCCcccchhhHHHHHHhccccchHHHHHHhcCC-cH
Confidence 46899999999999999998 6699999998877555 2222333 244578999999999988888876664 77
Q ss_pred hHHHHHHHHhh
Q 008350 77 DSILETLLTYS 87 (569)
Q Consensus 77 d~~le~Ll~~~ 87 (569)
+.+..+|....
T Consensus 458 ~~a~~~L~~s~ 468 (568)
T KOG2561|consen 458 DTAQRLLSASV 468 (568)
T ss_pred HHHHHHHHHhC
Confidence 99999988644
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.74 E-value=0.021 Score=64.05 Aligned_cols=81 Identities=21% Similarity=0.160 Sum_probs=57.1
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
..+|+|+.||.|.+++.+...--. ..|+++|+++.|.+..+.|....+.. ...++.+|+.+.. . .+.+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~----~-----~~~fD 208 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI----E-----KQKFD 208 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----c-----CCCcc
Confidence 457999999999999988654111 36899999999999999887554432 2445666653211 1 14699
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..||=-..+
T Consensus 209 lIvsNPPYi~~~ 220 (506)
T PRK01544 209 FIVSNPPYISHS 220 (506)
T ss_pred EEEECCCCCCch
Confidence 999999955433
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.70 E-value=0.029 Score=55.15 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+-||.|.++..+.+.+. .|+++|+++...+..+.++...+..+..+..+|..+.... .+.+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 145 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--------YAPF 145 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc--------CCCc
Confidence 4568899999999999988877752 5899999999988888887665555566777776543211 1579
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+.+.+|..
T Consensus 146 D~I~~~~~~~~ 156 (212)
T PRK00312 146 DRILVTAAAPE 156 (212)
T ss_pred CEEEEccCchh
Confidence 99998877654
No 100
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.67 E-value=0.034 Score=54.46 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=46.6
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
+.+|||+-||.|..++-|.+.|. .|.++|+++.+++..+.+....+..+..+...|+.++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~ 90 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL 90 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC
Confidence 46899999999999999999986 5899999999988877765544444445556666544
No 101
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.65 E-value=0.018 Score=59.85 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=56.0
Q ss_pred ccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHc-------CCceeEEEeeccCHHHHHHHHHHHhhc
Q 008350 419 KSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRL-------GVRMKNVVSVDISEVNRNIVRSWWEQT 491 (569)
Q Consensus 419 k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~a-------Gi~~k~V~avEid~~A~~t~~~n~~~~ 491 (569)
+..|.+|....+...+..+. ....+.+|+|.+||.|+|=+++.+. .-. ..++++|+++.++...+.|....
T Consensus 23 k~~G~~~TP~~i~~l~~~~~-~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~nl~l~ 100 (311)
T PF02384_consen 23 KKLGQFYTPREIVDLMVKLL-NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLNLLLH 100 (311)
T ss_dssp TSCGGC---HHHHHHHHHHH-TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHHHHHT
T ss_pred cccceeehHHHHHHHHHhhh-hccccceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhhhhhh
Confidence 55666776554432222222 2234668999999999998877651 112 47899999999988776654322
Q ss_pred CCCCc--ccccccccccchhhHHHHHhccCCeeEEEEcCCCCcc
Q 008350 492 NQKGT--LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 492 N~~~~--~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~f 533 (569)
+.... .+..+|.-.-.... ....+|+|++-||=...
T Consensus 101 ~~~~~~~~i~~~d~l~~~~~~------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 101 GIDNSNINIIQGDSLENDKFI------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp THHCBGCEEEES-TTTSHSCT------ST--EEEEEEE--CTCE
T ss_pred ccccccccccccccccccccc------cccccccccCCCCcccc
Confidence 21111 24445543221111 12479999999996655
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.43 E-value=0.027 Score=54.79 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
.+-+|+|++||.|.+++.+.+.+-. ..|+++|+++.+.+.++.|....+..+..++.+|+.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 4568999999999999988765322 3699999999999998888765544455667777754
No 103
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.38 E-value=0.036 Score=47.81 Aligned_cols=70 Identities=30% Similarity=0.378 Sum_probs=51.2
Q ss_pred eeccccChhHHHHHHHHc---CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 447 VLSLFSGIGGAEVALHRL---GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 447 vlDLFSGiGG~slGl~~a---Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
|+||-||.|.....+.+. |.+ ..++++|+++.+....+.++...+. .+.++++|++++... .+.+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--------~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--------DGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH--------SSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc--------CCCeeE
Confidence 689999999999999876 432 3799999999999888877654333 667899999886421 258999
Q ss_pred EEE
Q 008350 524 VIG 526 (569)
Q Consensus 524 liG 526 (569)
|+.
T Consensus 71 v~~ 73 (101)
T PF13649_consen 71 VVC 73 (101)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 104
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.028 Score=63.72 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=66.3
Q ss_pred CccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccccc-------------CCC--CChhHHHHHHHhCCCCHHHHH
Q 008350 1 MIDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASS-------------SAS--SSKSKLIDHFVGMGFSVDMVA 65 (569)
Q Consensus 1 ~~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~-------------~~~--ss~~~~~~~~~~MGF~~~~v~ 65 (569)
+|.+|+.||||++.-.||+=-.|..+++.--..|...=... .++ .-....+.+++.|||.+..+.
T Consensus 574 ~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~ 653 (763)
T KOG0944|consen 574 VISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAI 653 (763)
T ss_pred HHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHH
Confidence 47899999999999999999999999998877777654421 111 123344678999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHh
Q 008350 66 KAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 66 ~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
+|+..... +++.++|-++..
T Consensus 654 ~aL~~~n~-nveravDWif~h 673 (763)
T KOG0944|consen 654 KALKATNN-NVERAVDWIFSH 673 (763)
T ss_pred HHHHhcCc-cHHHHHHHHHhc
Confidence 99999875 567788877753
No 105
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.35 E-value=0.045 Score=54.02 Aligned_cols=62 Identities=26% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQL 506 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i 506 (569)
....+++|+.||.|.+...+.+.+. .|+++|+++.++...+.+....+. .+..+..+|+.++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC
Confidence 3467899999999999999988774 689999999999888776543332 1344556665543
No 106
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.074 Score=60.45 Aligned_cols=104 Identities=22% Similarity=0.359 Sum_probs=69.6
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGE 125 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 125 (569)
..-.++.+|+.||||++...||+==-|..++++...-|...- ...-..+. .-....++ ..+..
T Consensus 570 ~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HM--dDpd~~~p-~vvp~~~~-----------~a~~~--- 632 (763)
T KOG0944|consen 570 ADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHM--DDPDIDDP-FVVPGNSP-----------KADAR--- 632 (763)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhc--cCcccCCc-eecCCCCC-----------ccccC---
Confidence 566778999999999999999999999988888888877421 11000000 00000000 00100
Q ss_pred ccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 008350 126 EITNPDPDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICAA 174 (569)
Q Consensus 126 ~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~aa 174 (569)
+...+-+.+++.|||+...|..|+..... .|+..||-|++-
T Consensus 633 ------~~~e~~v~si~smGf~~~qa~~aL~~~n~--nveravDWif~h 673 (763)
T KOG0944|consen 633 ------EVDEESVASIVSMGFSRNQAIKALKATNN--NVERAVDWIFSH 673 (763)
T ss_pred ------CCChhHheeeeeecCcHHHHHHHHHhcCc--cHHHHHHHHHhc
Confidence 11124467899999999999999987654 689999999864
No 107
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=95.24 E-value=0.052 Score=56.41 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCc-ccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT-LIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~-~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.+++.+.+.|. ..|+++|+++.+.+..+.|...++.... ....+|.... ..+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~----------~~~~ 225 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP----------IEGK 225 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc----------cCCC
Confidence 3467899999999999999999885 4799999999999988888764433221 1222221110 0157
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+....++
T Consensus 226 fDlVvan~~~~ 236 (288)
T TIGR00406 226 ADVIVANILAE 236 (288)
T ss_pred ceEEEEecCHH
Confidence 99999865443
No 108
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=95.20 E-value=0.2 Score=47.32 Aligned_cols=121 Identities=14% Similarity=0.241 Sum_probs=82.2
Q ss_pred cccccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHH
Q 008350 3 DHFVGMGFSEEVVAKAIQEN---GEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSI 79 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~---g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~ 79 (569)
..+...||+++.|..||+.. |=-|.....+..+... ...+-+.-++...|..-||+.+.+..||+++.++. ..+
T Consensus 33 ~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~--~~~~~g~~~I~~~L~~kGi~~~~I~~~l~~~~~d~-~e~ 109 (157)
T PRK00117 33 RKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSR--ARKGYGPRRIRQELRQKGVDREIIEEALAELDIDW-EEL 109 (157)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCchHHHHHHHHHHcCCCHHHHHHHHHHcCccH-HHH
Confidence 45778899999999998754 5456667888777755 22344566778999999999999999999998433 333
Q ss_pred HHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcC
Q 008350 80 LETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERCG 159 (569)
Q Consensus 80 le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G 159 (569)
+..++.-....... .+ . ..+..-...|..=||+-+.+..||+...
T Consensus 110 a~~~~~k~~~~~~~-------------------------------~~---~-~~k~Ki~~~L~rkGF~~~~I~~~l~~~~ 154 (157)
T PRK00117 110 ARELARKKFRRPLP-------------------------------DD---A-KEKAKLVRFLARRGFSMDVIQRVLRNAL 154 (157)
T ss_pred HHHHHHHHcCCCCC-------------------------------CC---H-HHHHHHHHHHHHCCCCHHHHHHHHHhhh
Confidence 33333211111000 00 0 1123335899999999999999998765
Q ss_pred CC
Q 008350 160 PN 161 (569)
Q Consensus 160 ~~ 161 (569)
.+
T Consensus 155 ~~ 156 (157)
T PRK00117 155 DD 156 (157)
T ss_pred cc
Confidence 54
No 109
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.16 E-value=0.044 Score=55.48 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=50.6
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|-++..+.+. |-. -.|+++|+++...+..+......+..+..++++|++++...+ ..+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~-~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d--------~sf 117 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPN-GKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD--------NSF 117 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T--------T-E
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCc-cEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC--------Cce
Confidence 4679999999999999988764 432 379999999999888876655444446778899999887432 479
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+.++
T Consensus 118 D~v~~~f 124 (233)
T PF01209_consen 118 DAVTCSF 124 (233)
T ss_dssp EEEEEES
T ss_pred eEEEHHh
Confidence 9998776
No 110
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.15 E-value=0.064 Score=52.82 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=56.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|..+.-+.+..-.-..|+++|+++...+..+.|....+..+ ..++.+|..+.... .+.+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~--------~~~f 143 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK--------HAPF 143 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc--------CCCc
Confidence 45789999999999998777642111369999999998887777765444332 45677887654321 1478
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+.+..+.
T Consensus 144 D~Ii~~~~~~ 153 (205)
T PRK13944 144 DAIIVTAAAS 153 (205)
T ss_pred cEEEEccCcc
Confidence 9998876653
No 111
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.081 Score=58.43 Aligned_cols=91 Identities=21% Similarity=0.290 Sum_probs=63.2
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGE 125 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 125 (569)
-+-.++.+|++||||++...+|+---|..|++.+..-|... ... + +++|-. .-.+
T Consensus 557 ~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqH--MdD--------------P-----dlndP~----~~~~ 611 (749)
T COG5207 557 DNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQH--MDD--------------P-----DLNDPF----VPPP 611 (749)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhh--ccC--------------c-----ccCCCC----CCCC
Confidence 44667999999999999999999999999999999999741 110 1 111100 0001
Q ss_pred ccCCC-CCchHHHHHHHHhCCCCHHHHHHHHHhcCCC
Q 008350 126 EITNP-DPDKEEKLVSLASMGYSVQEASIAMERCGPN 161 (569)
Q Consensus 126 ~~~~~-~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~ 161 (569)
-.+.- .+....++.+|+.|||....+..|+---..|
T Consensus 612 ~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~d 648 (749)
T COG5207 612 NVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNTD 648 (749)
T ss_pred CCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence 11110 1334578999999999999999998766655
No 112
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.08 E-value=0.061 Score=53.37 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=56.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++.-+.+..-.-..|+++|+++...+..+.++...+..+..+..+|....... .+.+
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~--------~~~f 146 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE--------NAPY 146 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc--------CCCc
Confidence 45688999999999999887765211136999999999998888877655555566778887644321 1467
Q ss_pred eEEEEc
Q 008350 522 DLVIGG 527 (569)
Q Consensus 522 DlliGG 527 (569)
|+|+.+
T Consensus 147 D~I~~~ 152 (212)
T PRK13942 147 DRIYVT 152 (212)
T ss_pred CEEEEC
Confidence 887654
No 113
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.044 Score=60.46 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=62.3
Q ss_pred CccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccC-------------C-CCChhHHHHHHHhCCCCHHHHHH
Q 008350 1 MIDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSS-------------A-SSSKSKLIDHFVGMGFSVDMVAK 66 (569)
Q Consensus 1 ~~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~-------------~-~ss~~~~~~~~~~MGF~~~~v~~ 66 (569)
+|+++++||||.+..+||+--.|..|++.-..-|...-.... . .+-....+.+|..|||.+....+
T Consensus 561 ~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rk 640 (749)
T COG5207 561 LIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRK 640 (749)
T ss_pred HHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHH
Confidence 478999999999999999999999999999999998665221 1 11222346799999999999999
Q ss_pred HHHHhCCCchhHHHHH
Q 008350 67 AIQENGEENTDSILET 82 (569)
Q Consensus 67 Ai~~~G~~~~d~~le~ 82 (569)
|+-+... |++..|+-
T Consensus 641 al~~~n~-d~~r~V~w 655 (749)
T COG5207 641 ALMDMNT-DSKRRVVW 655 (749)
T ss_pred HHHHccC-CchheEEE
Confidence 9877654 33444443
No 114
>PLN02672 methionine S-methyltransferase
Probab=94.93 E-value=0.05 Score=65.87 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=57.3
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC----------------CCcccccccccccch
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ----------------KGTLIDFADVQQLDA 508 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~----------------~~~~~~~~DI~~i~~ 508 (569)
.+|+||.||.|.+++.+.+..-. ..|+++|+++.|.+..+.|...++. ....++.+|+.+...
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 57999999999999999876422 3799999999999999998764321 124456667654321
Q ss_pred hhHHHHHhccCCeeEEEEcCCCC
Q 008350 509 NRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 509 ~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
. ..+.+|+||+.||=-
T Consensus 199 ~-------~~~~fDlIVSNPPYI 214 (1082)
T PLN02672 199 D-------NNIELDRIVGCIPQI 214 (1082)
T ss_pred c-------cCCceEEEEECCCcC
Confidence 0 113699999999943
No 115
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.12 Score=54.31 Aligned_cols=103 Identities=23% Similarity=0.298 Sum_probs=69.7
Q ss_pred ceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh
Q 008350 415 TDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ 490 (569)
Q Consensus 415 t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~ 490 (569)
..+++.....|.-+.+ ...++.+.... .+ +|+||=||.|-+.+-+.+..-. ..+..+|++..|++..+.|...
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~-~~-~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDL-GG-KVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccC-CC-cEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHHHHHHhHHH
Confidence 3444555556665544 12233333322 23 8999999999999988887643 4689999999999999999876
Q ss_pred cCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 491 TNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 491 ~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
++..+..++..|+.+-. . +.+|+||.-||=
T Consensus 205 N~~~~~~v~~s~~~~~v----~------~kfd~IisNPPf 234 (300)
T COG2813 205 NGVENTEVWASNLYEPV----E------GKFDLIISNPPF 234 (300)
T ss_pred cCCCccEEEEecccccc----c------ccccEEEeCCCc
Confidence 55544345555554332 1 369999999994
No 116
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.91 E-value=0.055 Score=57.45 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=45.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i 506 (569)
.+.+|||+-||.|.++..+.+.|. .|+++|.++..++.++.+...... .+..++++|+.++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 356899999999999999999885 589999999999888866432211 1344666776654
No 117
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.66 E-value=0.019 Score=59.82 Aligned_cols=49 Identities=27% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCCcceeccccChhHHHH-HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC
Q 008350 442 PDGINVLSLFSGIGGAEV-ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN 492 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~sl-Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N 492 (569)
..+-.++|||+|||=|++ -+-.+|- ++|+|+|+++.++.+++++...+|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~~N~ 242 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAEANN 242 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHHhcc
Confidence 345679999999999999 7778886 699999999999999999876543
No 118
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.089 Score=56.19 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccc-cccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFA-DVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~-DI~~i~~~~l~~~~~~~g~ 520 (569)
..+-+++|=|||.||+-+-....|. .++++|++...+.-.+.|....+..+..++.. |++++. +++ ..
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~ 264 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NS 264 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Cc
Confidence 3466899999999999998888997 48999999999888888877666555544555 888876 331 24
Q ss_pred eeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHH
Q 008350 521 FDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDL 561 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~ 561 (569)
+|-|+..||=---|... . +.-..|+.++++-...
T Consensus 265 vdaIatDPPYGrst~~~---~----~~l~~Ly~~~le~~~e 298 (347)
T COG1041 265 VDAIATDPPYGRSTKIK---G----EGLDELYEEALESASE 298 (347)
T ss_pred cceEEecCCCCcccccc---c----ccHHHHHHHHHHHHHH
Confidence 99999999953222111 1 1124577777766544
No 119
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.54 E-value=0.082 Score=53.62 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=56.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+.+|+|+-||.|.++..+.+.|. .|+++|+++.+++.++.+....+. ++..++++|+.++... . .+.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--~-----~~~ 112 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--L-----ETP 112 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--c-----CCC
Confidence 3467899999999999999999985 589999999999888876544332 2345677787765321 1 146
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+....
T Consensus 113 fD~V~~~~v 121 (255)
T PRK11036 113 VDLILFHAV 121 (255)
T ss_pred CCEEEehhH
Confidence 888876543
No 120
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.42 E-value=0.099 Score=55.34 Aligned_cols=44 Identities=23% Similarity=0.198 Sum_probs=38.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
.+.+|||+.||.|.+++.+.+.|. .|.++|+++.+.+..+.+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence 357899999999999999999885 58999999999888777654
No 121
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.41 E-value=0.12 Score=52.51 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN 492 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N 492 (569)
...+.+|+|+-||.|.+++.+.+.|.. .|+++|+++.+.+..+.|...++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcC
Confidence 345788999999999999999998863 59999999999998888765443
No 122
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.38 E-value=0.12 Score=50.84 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=43.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFAD 502 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~D 502 (569)
...+|||+-||.|.++..+.+.|. .|.++|+++.++...+.++...+. ....+..+|
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 457899999999999999998885 499999999998888876543322 123344455
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.36 E-value=0.083 Score=54.75 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=55.2
Q ss_pred CCcceeccccChhHHHHHHHH-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcc-ccccccc--ccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHR-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTL-IDFADVQ--QLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~-~~~~DI~--~i~~~~l~~~~~~~ 518 (569)
.+..++|++||.|.+++++.. ++ + -+|.|+|.++.|.+....|.......|.. +++.+.+ ......+ ..
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l-----~~ 220 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPL-----LE 220 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccccc-----cc
Confidence 345799999999999998865 34 3 58999999999999888887654433322 2222111 1111111 23
Q ss_pred CCeeEEEEcCCCC
Q 008350 519 GGFDLVIGGSPCN 531 (569)
Q Consensus 519 g~~DlliGGpPCQ 531 (569)
+..|++++.||--
T Consensus 221 ~~~dllvsNPPYI 233 (328)
T KOG2904|consen 221 GKIDLLVSNPPYI 233 (328)
T ss_pred CceeEEecCCCcc
Confidence 7899999999964
No 124
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=94.30 E-value=0.12 Score=52.67 Aligned_cols=77 Identities=23% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|=+++.+.+..-. -.|+++|+++...+..+.-....+..+..++.+|..++...+ ..||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D--------~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD--------NSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC--------CccC
Confidence 5799999999999999999886433 479999999999888776554433333667788888886432 3466
Q ss_pred EEEEcC
Q 008350 523 LVIGGS 528 (569)
Q Consensus 523 lliGGp 528 (569)
++..++
T Consensus 122 ~vt~~f 127 (238)
T COG2226 122 AVTISF 127 (238)
T ss_pred EEEeee
Confidence 665544
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.28 E-value=0.11 Score=55.17 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++.-+.+..-.-..|+++|+++...+..+.+....+..++.++.+|..+.... .+.+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~--------~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE--------FAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc--------cCCc
Confidence 35678999999999999988775321125899999999888777776555555566677776544211 1356
Q ss_pred eEEEEc
Q 008350 522 DLVIGG 527 (569)
Q Consensus 522 DlliGG 527 (569)
|+|+.+
T Consensus 151 D~Ii~~ 156 (322)
T PRK13943 151 DVIFVT 156 (322)
T ss_pred cEEEEC
Confidence 777764
No 126
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.20 E-value=0.17 Score=59.19 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCcceeccccChhHHHHHHHHc------CCc-----------------------------------eeEEEeeccCHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRL------GVR-----------------------------------MKNVVSVDISEVNR 481 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a------Gi~-----------------------------------~k~V~avEid~~A~ 481 (569)
.+..++|-|||.|++-+-.... |+. -..++++|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4678999999999987633221 110 01489999999999
Q ss_pred HHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHH
Q 008350 482 NIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILD 560 (569)
Q Consensus 482 ~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~ 560 (569)
...+.|....+..+ ..+..+|+.++.... ..+.+|+|+.-||=-. +.|....-..||..+.+.++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPPYg~--------r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPPYGE--------RLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCCCcC--------ccCchHHHHHHHHHHHHHHH
Confidence 99999987666544 346678888765321 0135899999999421 22222223357777777766
Q ss_pred Hhcc
Q 008350 561 LVKN 564 (569)
Q Consensus 561 ~vrP 564 (569)
...|
T Consensus 336 ~~~~ 339 (702)
T PRK11783 336 QQFG 339 (702)
T ss_pred HhCC
Confidence 5433
No 127
>PLN02244 tocopherol O-methyltransferase
Probab=94.19 E-value=0.11 Score=55.23 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=46.1
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLD 507 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~ 507 (569)
.+.+|||+-||.|+++..+.+. |. .|.++|+++..++..+.+....+. ....++.+|+.++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~ 181 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP 181 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC
Confidence 4578999999999999988875 53 689999999988776665443332 23556778877654
No 128
>PRK00811 spermidine synthase; Provisional
Probab=94.14 E-value=0.088 Score=54.71 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=58.9
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc-----CCCCcccccccccccchhhHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT-----NQKGTLIDFADVQQLDANRIEQMI 515 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~-----N~~~~~~~~~DI~~i~~~~l~~~~ 515 (569)
+++-+||++-+|.|++..-+.+. +. +.|.+||+++..++..+.++... ..+...++.+|..++...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~------ 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------ 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh------
Confidence 55678999999999998877665 54 57999999999999999887542 234556778887765432
Q ss_pred hccCCeeEEEEcC
Q 008350 516 NAFGGFDLVIGGS 528 (569)
Q Consensus 516 ~~~g~~DlliGGp 528 (569)
..+.+|+|+...
T Consensus 147 -~~~~yDvIi~D~ 158 (283)
T PRK00811 147 -TENSFDVIIVDS 158 (283)
T ss_pred -CCCcccEEEECC
Confidence 125799999975
No 129
>PRK10742 putative methyltransferase; Provisional
Probab=93.99 E-value=0.21 Score=51.28 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=54.1
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccc-ccccccccchhhHHHHHhc-cCCe
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLI-DFADVQQLDANRIEQMINA-FGGF 521 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~-~~~DI~~i~~~~l~~~~~~-~g~~ 521 (569)
.+|||+|+|.|..++=+...|. + |.++|.++.....++.+...... +.... +...|+-+..+.+ .++.. ...+
T Consensus 90 p~VLD~TAGlG~Da~~las~G~--~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~-~~L~~~~~~f 165 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGC--R-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL-TALTDITPRP 165 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH-HHHhhCCCCC
Confidence 4899999999999999999996 3 99999999999888877654211 11000 0012222222222 22222 2369
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|...||=..
T Consensus 166 DVVYlDPMfp~ 176 (250)
T PRK10742 166 QVVYLDPMFPH 176 (250)
T ss_pred cEEEECCCCCC
Confidence 99999997543
No 130
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.87 E-value=0.14 Score=53.14 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=44.2
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
-+|||+=||.|..++.+.+.|. .|.++|+++.+++.++.+....+. +..+...|+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~ 178 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINS 178 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhc
Confidence 4899999999999999999886 589999999999888777654433 34445555543
No 131
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=93.72 E-value=0.19 Score=49.03 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=42.6
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~ 504 (569)
+.+|||+=||.|..++-+.+.|. .|+++|+++.+++.++.+....|.+ ......|+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~ 87 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN 87 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch
Confidence 46899999999999999999885 5899999999998777665433332 233344443
No 132
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.61 E-value=0.11 Score=53.34 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=43.0
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
+.+.+|||+=||.|+.+..+.+. |. .|+++|+++..+...+.++.. .....+..+|+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~---~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA---HVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK 111 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC---EEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC
Confidence 45678999999999988877653 43 689999999988877765332 12344566776643
No 133
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=93.49 E-value=0.23 Score=52.72 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=53.2
Q ss_pred CCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhc-CCCCcc-c-ccccccccchhhHHHHHhc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTL-I-DFADVQQLDANRIEQMINA 517 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~-~-~~~DI~~i~~~~l~~~~~~ 517 (569)
.+.++||+=||+|++..-+... +. .++++|+++.|++..+.|...+ +..+.. + ...|...+.. .++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~----~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFK----GIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhh----ccccc
Confidence 4688999999999887655443 54 5899999999999999987655 333321 1 1223222221 11111
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.||+++.-||=
T Consensus 187 ~~~fDlivcNPPf 199 (321)
T PRK11727 187 NERFDATLCNPPF 199 (321)
T ss_pred CCceEEEEeCCCC
Confidence 2579999999994
No 134
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=93.46 E-value=0.029 Score=55.64 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=38.0
Q ss_pred ccccccCCCCCCCCCCCCcccHHhhchhhhccCCCC-----CccCCcccceeec--cchhHHHHHHhhhhccCCC
Q 008350 293 GYVHNLPIKNRHHLVPLPPQNIYEALPLSRKWWPSW-----DTRSHLNCLQTCI--ASAKLTERIRKALEECDGE 360 (569)
Q Consensus 293 gyihnlp~~~r~~~~p~~p~tI~ealp~~r~~~p~~-----d~r~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~ 360 (569)
|.|-++.+..+++ .+. +..+ -+.+-+.++|+- ....+.+.|++.. .........++|......+
T Consensus 45 ~qI~ei~~~k~~~-~~~-~~~~--~vrVrwFYRPEdt~~~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d 115 (202)
T cd04708 45 CQVLEIVVEKESK-QAD-VAST--QVKVRRFYRPEDVSPEKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSD 115 (202)
T ss_pred EEEEEEEecccCC-CCC-Ccce--EEEEEEEechhhcCcccceecCceeEEEeccceeechhHcceEEEEEecCc
Confidence 6666676665554 221 2222 355666777772 2334666777774 5566677777777777665
No 135
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.26 E-value=0.76 Score=49.97 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=31.2
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|..+++|||+++.|.+|+.-- =.|.|.=+||||+
T Consensus 160 I~~i~eMGf~R~qV~~ALRAa-fNNPdRAVEYL~t 193 (378)
T TIGR00601 160 IEEIMEMGYEREEVERALRAA-FNNPDRAVEYLLT 193 (378)
T ss_pred HHHHHHhCCCHHHHHHHHHHH-hCCHHHHHHHHHh
Confidence 678999999999999999987 5599999999997
No 136
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=93.15 E-value=0.18 Score=50.01 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=51.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~g~ 520 (569)
+.+-+|+||-||.|+++..+.+..-.-..|+++|+++. .+.+++.++++|+++... ..+...+ ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERV-GDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHh-CCCC
Confidence 44668999999999999877665321137999999882 134567789999987642 2222211 1367
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+..+
T Consensus 118 ~D~V~S~~ 125 (209)
T PRK11188 118 VQVVMSDM 125 (209)
T ss_pred CCEEecCC
Confidence 99999854
No 137
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=93.12 E-value=0.31 Score=48.12 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=42.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
.+-++|||=||-|.=++-|.+.|+ .|.|+|+++.+.+.++......+.+ ......|+.+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~ 89 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF 89 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc
Confidence 356899999999999999999998 4899999999998776654443332 34455565544
No 138
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.08 E-value=0.35 Score=52.43 Aligned_cols=120 Identities=18% Similarity=0.199 Sum_probs=78.1
Q ss_pred chhhhhhhhhccCCCCcceeccccChhHHHHHHHHcC--------------------------------------CceeE
Q 008350 429 TVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLG--------------------------------------VRMKN 470 (569)
Q Consensus 429 t~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aG--------------------------------------i~~k~ 470 (569)
++++-+..+....+. -.++|-+||.|++-+=....+ -++..
T Consensus 178 tLAaAil~lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 178 TLAAAILLLAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 344444333333333 579999999999776222222 11224
Q ss_pred EEeeccCHHHHHHHHHHHhhcCCCCc-ccccccccccchhhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCcc
Q 008350 471 VVSVDISEVNRNIVRSWWEQTNQKGT-LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKES 549 (569)
Q Consensus 471 V~avEid~~A~~t~~~n~~~~N~~~~-~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~ 549 (569)
++++|+|+..++.++.|+......+. .+..+|++.+.... ..+|+||.-||= |- |.|-+..-.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--------~~~gvvI~NPPY------Ge--Rlg~~~~v~ 320 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--------EEYGVVISNPPY------GE--RLGSEALVA 320 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--------CcCCEEEeCCCc------ch--hcCChhhHH
Confidence 77999999999999999877665443 36678888876431 368999999994 22 333232233
Q ss_pred chHHHHHHHHHHhccc
Q 008350 550 SLFYDYFRILDLVKNM 565 (569)
Q Consensus 550 ~Lf~~~~rII~~vrPk 565 (569)
.||.+|.+.++..=+.
T Consensus 321 ~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 321 KLYREFGRTLKRLLAG 336 (381)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5999999888765444
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.02 E-value=0.31 Score=49.26 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=57.2
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhc--c
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINA--F 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~--~ 518 (569)
+.-+|+++.||+|..++.+.++ +-. -.|+++|+++.+.+..+.|+...+..+ ..++.+|+.+.. ..+... .
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L----~~l~~~~~~ 142 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSAL----DQLLNNDPK 142 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHH----HHHHhCCCC
Confidence 3567999999999877766654 212 269999999999999999988776542 456778887653 222212 2
Q ss_pred CCeeEEEEcC
Q 008350 519 GGFDLVIGGS 528 (569)
Q Consensus 519 g~~DlliGGp 528 (569)
+.||+|+.+.
T Consensus 143 ~~fD~VfiDa 152 (234)
T PLN02781 143 PEFDFAFVDA 152 (234)
T ss_pred CCCCEEEECC
Confidence 5789998875
No 140
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.00 E-value=0.03 Score=56.78 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH-Hh-hcCCCCcccccccccccchhhHHHHHhcc
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW-WE-QTNQKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n-~~-~~N~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
..++-+|+|.|-|-|=.++...+.|- ..|..+|.|+........| |. ..--....++.||+.++-. ++.+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~-~~~D----- 203 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVK-DFDD----- 203 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHh-cCCc-----
Confidence 34689999999999999887777775 2689999999865543322 11 0001123566777766542 2221
Q ss_pred CCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHH
Q 008350 519 GGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILD 560 (569)
Q Consensus 519 g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~ 560 (569)
..||+||-.|| -||.||. +... .+|.++.|||+
T Consensus 204 ~sfDaIiHDPP--RfS~Age-----LYse--efY~El~RiLk 236 (287)
T COG2521 204 ESFDAIIHDPP--RFSLAGE-----LYSE--EFYRELYRILK 236 (287)
T ss_pred cccceEeeCCC--ccchhhh-----HhHH--HHHHHHHHHcC
Confidence 46999999999 4888884 2222 37888888864
No 141
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=92.96 E-value=0.26 Score=50.48 Aligned_cols=78 Identities=24% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHh---hcCCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWE---QTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~---~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+|||+-||.|.+...+.+. |-. ..|+++|+++...+..+.... ....++..++++|+.++....
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~------- 143 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD------- 143 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC-------
Confidence 34678999999999998887664 422 368999999999887764321 112234557788888765321
Q ss_pred cCCeeEEEEcC
Q 008350 518 FGGFDLVIGGS 528 (569)
Q Consensus 518 ~g~~DlliGGp 528 (569)
+.+|+|+.+.
T Consensus 144 -~sfD~V~~~~ 153 (261)
T PLN02233 144 -CYFDAITMGY 153 (261)
T ss_pred -CCEeEEEEec
Confidence 4689887654
No 142
>PRK14135 recX recombination regulator RecX; Provisional
Probab=92.85 E-value=1.6 Score=44.70 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=79.4
Q ss_pred cccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc-hhH
Q 008350 3 DHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN-TDS 78 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~-~d~ 78 (569)
..+..-||+++.|..||+ +.|--|.....+..+..... ...-+.-.+...|...||+.+.+..||+++-+++ .+.
T Consensus 79 ~kL~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~-~~~~g~~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~ 157 (263)
T PRK14135 79 DYLKKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNIN-TGDKGPRVIKQKLLQKGIEDEIIEEALSEYTEEDQIEV 157 (263)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccccchHHHHHHHHHcCCCHHHHHHHHHhCChhhHHHH
Confidence 345667999999999987 55666666766666653322 1223555788899999999999999999985533 221
Q ss_pred HHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHH-HHHHHhCCCCHHHHHHHHHh
Q 008350 79 ILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEK-LVSLASMGYSVQEASIAMER 157 (569)
Q Consensus 79 ~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k-~~~L~~Mgf~e~e~~~Ai~r 157 (569)
+. .++.. ........ + ......| ...|..-||+.+.+..||+.
T Consensus 158 a~-~~~~k-~~~~~~~~-~---------------------------------~~~~k~Ki~~~L~rkGf~~~~I~~~l~~ 201 (263)
T PRK14135 158 AQ-KLAEK-LLKKYQKL-P---------------------------------FKALKQKIIQSLLTKGFSYEVIKAALEE 201 (263)
T ss_pred HH-HHHHH-HHHHhcCC-C---------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 11 11111 01110000 0 0001234 47899999999999999999
Q ss_pred cCCCCch
Q 008350 158 CGPNTSI 164 (569)
Q Consensus 158 ~G~~a~~ 164 (569)
+..+...
T Consensus 202 ~~~e~d~ 208 (263)
T PRK14135 202 LDLEQDE 208 (263)
T ss_pred cccCCCh
Confidence 9765443
No 143
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=92.68 E-value=0.28 Score=49.45 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=51.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.++..+.+..-. ..|+++|+++..++..+.+ .++..++.+|+..+... ..+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~~---------~~fD 95 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPA-ARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQPP---------QALD 95 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccCCC---------CCcc
Confidence 4678999999999999888875311 4699999999988877754 33455677777655321 3567
Q ss_pred EEEEcCCC
Q 008350 523 LVIGGSPC 530 (569)
Q Consensus 523 lliGGpPC 530 (569)
+|+.....
T Consensus 96 ~v~~~~~l 103 (258)
T PRK01683 96 LIFANASL 103 (258)
T ss_pred EEEEccCh
Confidence 77666544
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=92.58 E-value=0.4 Score=47.86 Aligned_cols=84 Identities=19% Similarity=0.093 Sum_probs=60.5
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
...+.+|||+-||.|=++.-+..+.-+.-.|+++|+++...+..+.+....+..++.+.++|...-... .++
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~--------~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE--------EAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG--------G-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc--------CCC
Confidence 456789999999999988888876333236899999999888888887766666777888887654432 258
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|.|+.+.-|..
T Consensus 142 fD~I~v~~a~~~ 153 (209)
T PF01135_consen 142 FDRIIVTAAVPE 153 (209)
T ss_dssp EEEEEESSBBSS
T ss_pred cCEEEEeeccch
Confidence 999999876653
No 145
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=92.52 E-value=0.27 Score=49.50 Aligned_cols=69 Identities=20% Similarity=0.127 Sum_probs=51.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
.-+|||+=||.|.++..+.+.|. .++++|+++.+++..+.+ .+...++++|+..+... .+.+|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~-----~~~~~~~~~d~~~~~~~--------~~~fD~ 106 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQK-----DAADHYLAGDIESLPLA--------TATFDL 106 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCCEEEcCcccCcCC--------CCcEEE
Confidence 46799999999999998888773 689999999998877653 22234677888765421 136888
Q ss_pred EEEcC
Q 008350 524 VIGGS 528 (569)
Q Consensus 524 liGGp 528 (569)
|+...
T Consensus 107 V~s~~ 111 (251)
T PRK10258 107 AWSNL 111 (251)
T ss_pred EEECc
Confidence 87654
No 146
>PRK04266 fibrillarin; Provisional
Probab=92.48 E-value=0.46 Score=47.93 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~g~ 520 (569)
..+.+|+|+-||.|+++..+.+..-. ..|+++|+++.+.+.+..+... .++..++.+|+..... ..+. ..
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~~~l~------~~ 141 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERYAHVV------EK 141 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchhhhcc------cc
Confidence 45678999999999999999875212 3799999999877655444322 2456677888875321 1111 35
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+.+.
T Consensus 142 ~D~i~~d~ 149 (226)
T PRK04266 142 VDVIYQDV 149 (226)
T ss_pred CCEEEECC
Confidence 89988644
No 147
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=92.37 E-value=0.4 Score=47.40 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=43.7
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
.+..-+|||+=||.|.....+.+. +. ..+.++|+++.+++.++.+ .++..+..+|+.+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~-----~~~~~~~~~d~~~ 99 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAY-----LPNINIIQGSLFD 99 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhh-----CCCCcEEEeeccC
Confidence 455678999999999999999876 22 3699999999999988764 2334455666554
No 148
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=92.37 E-value=0.32 Score=49.61 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCCcceeccccChhHHHHHHHH-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHR-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+-+|||+-||.|...+-+.+ .|-. ..|+++|+++..++..+.+....+..+..+..+|+.++... .+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~--------~~~ 146 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA--------DNS 146 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC--------CCc
Confidence 4567899999999876664444 3432 26899999999998888776554444555667777665421 135
Q ss_pred eeEEEEc
Q 008350 521 FDLVIGG 527 (569)
Q Consensus 521 ~DlliGG 527 (569)
+|+|+..
T Consensus 147 fD~Vi~~ 153 (272)
T PRK11873 147 VDVIISN 153 (272)
T ss_pred eeEEEEc
Confidence 7777754
No 149
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=92.35 E-value=0.23 Score=49.57 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVR 485 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~ 485 (569)
+.+-+|||+.||.|--.+-|.+.|+ .|+++|+++.|++.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFF 73 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHH
Confidence 3457999999999999999999997 4899999999998643
No 150
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.34 E-value=0.17 Score=54.99 Aligned_cols=81 Identities=22% Similarity=0.210 Sum_probs=48.2
Q ss_pred ccCCCCcceeccccChh--HHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccchhhHHHH
Q 008350 439 EMYPDGINVLSLFSGIG--GAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 439 ~~~~~~i~vlDLFSGiG--G~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~~~l~~~ 514 (569)
....+++++||-+||+| |+..+.+-.|. ..|+++|+++.|++..+.|...++... ..+.+.|...+..
T Consensus 45 ~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~------ 116 (377)
T PF02005_consen 45 EKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY------ 116 (377)
T ss_dssp HCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC------
T ss_pred hhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh------
Confidence 33345789999999999 56677776675 589999999999999999976555443 2333445544331
Q ss_pred HhccCCeeEEEEcC
Q 008350 515 INAFGGFDLVIGGS 528 (569)
Q Consensus 515 ~~~~g~~DlliGGp 528 (569)
.....+|+|=..|
T Consensus 117 -~~~~~fD~IDlDP 129 (377)
T PF02005_consen 117 -SRQERFDVIDLDP 129 (377)
T ss_dssp -HSTT-EEEEEE--
T ss_pred -hccccCCEEEeCC
Confidence 1124566665544
No 151
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=92.04 E-value=0.27 Score=53.55 Aligned_cols=82 Identities=16% Similarity=0.063 Sum_probs=62.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+..++|+-||.|.+.+.+.+..-. ..++++|+++.++.....+....+.++..++.+|+..+. +.++ .+.+|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll-~~~~-----~~s~D 194 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLL-ELLP-----SNSVE 194 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhh-hhCC-----CCcee
Confidence 3567999999999999999887422 478999999998877766655555667778888887654 2222 26799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
.|+.-+|+.
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 999998875
No 152
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=92.00 E-value=0.19 Score=51.74 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=38.2
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
+++++|.=||.|-+|..|.+.|. .|.++|..+.++++++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHh
Confidence 57799999999999999999994 799999999999999987
No 153
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=91.86 E-value=0.32 Score=48.77 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=36.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVR 485 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~ 485 (569)
+.+-+||++.||.|--.+-|.+.|+ .|+|||+++.|++.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHH
Confidence 3457999999999999999999997 4999999999998653
No 154
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.80 E-value=0.31 Score=47.65 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=55.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.++..+.+.+.. ..+.++|+++......+.+.. +...++.+|+.+.... .+.+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~--------~~~fD 100 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLE--------DSSFD 100 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCC--------CCcee
Confidence 3468999999999999999988754 358999999998876665422 2345667787765421 14689
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+....++
T Consensus 101 ~vi~~~~l~ 109 (240)
T TIGR02072 101 LIVSNLALQ 109 (240)
T ss_pred EEEEhhhhh
Confidence 998776554
No 155
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.76 E-value=0.43 Score=46.26 Aligned_cols=74 Identities=23% Similarity=0.196 Sum_probs=51.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+-||.|.++..+.+.+.....++++|+++..+...+.+.. ......+..+|+.++... .+.+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~--------~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE--------DNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC--------CCcEE
Confidence 46789999999999999988876421368999999998887776543 122345667777765421 13577
Q ss_pred EEEE
Q 008350 523 LVIG 526 (569)
Q Consensus 523 lliG 526 (569)
+|+.
T Consensus 109 ~i~~ 112 (223)
T TIGR01934 109 AVTI 112 (223)
T ss_pred EEEE
Confidence 7764
No 156
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.58 E-value=0.39 Score=47.10 Aligned_cols=61 Identities=28% Similarity=0.292 Sum_probs=43.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
.+.+|+|+-||.|.+...+.+.+. .+.++|.++..+...+.+....+.....+..+|+.++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~ 105 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL 105 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh
Confidence 467899999999999999888875 4899999999887777654433221233444554433
No 157
>PRK08317 hypothetical protein; Provisional
Probab=91.43 E-value=0.53 Score=45.89 Aligned_cols=64 Identities=22% Similarity=0.113 Sum_probs=43.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
..+.+|+|+-||.|.+...+.+.......++++|+++......+.+.. ...+...+..+|+..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL 81 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC
Confidence 346789999999999999887753112468999999988776665421 1122344556666554
No 158
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.35 E-value=0.63 Score=45.78 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=57.8
Q ss_pred hhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch
Q 008350 432 YHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA 508 (569)
Q Consensus 432 ~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~ 508 (569)
..++.+.+. .+-+++|.=||+|+.++-+..+|-. -.|+|+|.++.+....+.|....+.++..++.+|.-+...
T Consensus 25 l~ls~L~~~--~g~~l~DIGaGtGsi~iE~a~~~p~-~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 25 LTLSKLRPR--PGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHhhCCC--CCCEEEEeCCCccHHHHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 345555443 4568999999999988877766644 5799999999999999999888887777788888776653
No 159
>PRK06202 hypothetical protein; Provisional
Probab=91.34 E-value=0.49 Score=47.13 Aligned_cols=76 Identities=24% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCCcceeccccChhHHHHHHHH----cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHR----LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~----aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
.++.+|+|+-||.|.++..|.+ .|.. ..++++|+++.+++..+.... .++..+...|...+.. .
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~-~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~~---~----- 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLR-LEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELVA---E----- 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCC-cEEEEEcCCHHHHHHHHhccc---cCCCeEEEEecccccc---c-----
Confidence 3567899999999999888764 3544 269999999999887765421 2233344444444431 1
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
.+.+|+|+...-
T Consensus 127 ~~~fD~V~~~~~ 138 (232)
T PRK06202 127 GERFDVVTSNHF 138 (232)
T ss_pred CCCccEEEECCe
Confidence 157899988754
No 160
>PRK03612 spermidine synthase; Provisional
Probab=91.24 E-value=0.25 Score=55.70 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=59.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH--Hhhc-----CCCCcccccccccccchhhHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW--WEQT-----NQKGTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n--~~~~-----N~~~~~~~~~DI~~i~~~~l~~~ 514 (569)
+++-+|+++-+|.|++...+.+.+- ++.+.+||+|+..++..+.| +... +.+...++.+|..+....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 5667899999999999887776542 25899999999999988873 2221 234556777787765321
Q ss_pred HhccCCeeEEEEcCCCC
Q 008350 515 INAFGGFDLVIGGSPCN 531 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ 531 (569)
..+.+|+|+.++|-.
T Consensus 370 --~~~~fDvIi~D~~~~ 384 (521)
T PRK03612 370 --LAEKFDVIIVDLPDP 384 (521)
T ss_pred --CCCCCCEEEEeCCCC
Confidence 125799999998753
No 161
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=91.23 E-value=0.47 Score=46.57 Aligned_cols=76 Identities=25% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
...+|+|+-||.|.++..+.+.+-....++++|+++.+....+.++...+. ....+..+|+.++... .+.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~ 122 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP--------DNSF 122 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC--------CCCc
Confidence 357899999999999998888763124799999999988877776543211 2344666777655311 1457
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 123 D~I~~ 127 (239)
T PRK00216 123 DAVTI 127 (239)
T ss_pred cEEEE
Confidence 77764
No 162
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=91.22 E-value=0.3 Score=47.41 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=40.6
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
....+.+.+++|+-||.|.+...+.+.+. ..++++|+++.+++..+. . +..++.+|+.+
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~----~---~~~~~~~d~~~ 66 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA----R---GVNVIQGDLDE 66 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH----c---CCeEEEEEhhh
Confidence 33445567899999999999988865432 246899999988766542 1 23355666654
No 163
>PRK14135 recX recombination regulator RecX; Provisional
Probab=91.15 E-value=1.5 Score=44.87 Aligned_cols=123 Identities=22% Similarity=0.305 Sum_probs=74.8
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCH----HHHHHHHHhcccccCCCC---ChhHHHHHHHhCCCCHHHHHHHHHHhCCC-
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNT----DLILEALLKHSASSSASS---SKSKLIDHFVGMGFSVDMVAKAIQENGEE- 74 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~----~~ile~ll~~~~~~~~~s---s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~- 74 (569)
..+...||+.+.|..||++.-+++. ..+++.++.... ..+ ...++...|..-||+.+.|..||+++..+
T Consensus 130 ~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~~~k~~~~~~---~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~ 206 (263)
T PRK14135 130 QKLLQKGIEDEIIEEALSEYTEEDQIEVAQKLAEKLLKKYQ---KLPFKALKQKIIQSLLTKGFSYEVIKAALEELDLEQ 206 (263)
T ss_pred HHHHHcCCCHHHHHHHHHhCChhhHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHcccCC
Confidence 4577889999999999998744332 123444333211 122 23567789999999999999999999743
Q ss_pred chhHHHHHHHHhh--hhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHH
Q 008350 75 NTDSILETLLTYS--ALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEAS 152 (569)
Q Consensus 75 ~~d~~le~Ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~ 152 (569)
+.+.-.+.|..-. .....+.. ++ ...+..-...|..=||+-+.+.
T Consensus 207 d~~~e~e~l~~~~~k~~~k~~~~-----------------------------~~----~k~k~K~~~~L~rrGF~~~~I~ 253 (263)
T PRK14135 207 DEEEEQELLQKELEKAYRKYSKY-----------------------------DG----YELKQKLKQALYRKGFSYDDID 253 (263)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcC-----------------------------CH----HHHHHHHHHHHHHCCCCHHHHH
Confidence 2233333332111 01111000 00 0012233488999999999999
Q ss_pred HHHHhcCCC
Q 008350 153 IAMERCGPN 161 (569)
Q Consensus 153 ~Ai~r~G~~ 161 (569)
.+|.....+
T Consensus 254 ~~l~~~~~~ 262 (263)
T PRK14135 254 SFLREYGIE 262 (263)
T ss_pred HHHHHhccC
Confidence 999887654
No 164
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.07 E-value=0.27 Score=53.41 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=37.4
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSA 88 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~ 88 (569)
++.....|..++.|||+++.|.+||.-.=. |.|..||+|++-|-
T Consensus 153 g~~~e~~I~~i~eMGf~R~qV~~ALRAafN-NPdRAVEYL~tGIP 196 (378)
T TIGR00601 153 GSERETTIEEIMEMGYEREEVERALRAAFN-NPDRAVEYLLTGIP 196 (378)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHhC-CHHHHHHHHHhCCC
Confidence 445566899999999999999999987654 67999999999765
No 165
>PRK05785 hypothetical protein; Provisional
Probab=91.05 E-value=0.61 Score=46.76 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=51.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|-+...+.+.+ . ..|+++|+++..++..+.. ...+++|+.++...+ +.+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d--------~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRD--------KSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCC--------CCEE
Confidence 35689999999999999988873 1 2699999999998876531 123567777664321 5799
Q ss_pred EEEEcCCC
Q 008350 523 LVIGGSPC 530 (569)
Q Consensus 523 lliGGpPC 530 (569)
+|+.+.-.
T Consensus 113 ~v~~~~~l 120 (226)
T PRK05785 113 VVMSSFAL 120 (226)
T ss_pred EEEecChh
Confidence 99987643
No 166
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.98 E-value=0.46 Score=45.80 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=49.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~g~ 520 (569)
+.+-+|||+-||.|+++..+.+....-..++++|+++.. ..++..++++|+.+... ..+.... ..+.
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~-~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERV-GDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHh-CCCC
Confidence 456789999999999998887653222368999999853 12345567788876432 1111111 1246
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+.+++
T Consensus 99 ~D~V~~~~~ 107 (188)
T TIGR00438 99 VDVVMSDAA 107 (188)
T ss_pred ccEEEcCCC
Confidence 999997643
No 167
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=90.93 E-value=0.33 Score=49.72 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=60.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+..|+++..|.|.++..|...+ +.+.++|+++..+..++..+. ..++..++.+|+.++...... .....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~~~~-----~~~~~ 99 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLYDLL-----KNQPL 99 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGGGHC-----SSSEE
T ss_pred CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccHHhh-----cCCce
Confidence 57889999999999999999998 579999999999988886543 345677889999988754321 13567
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+|..|
T Consensus 100 ~vv~NlP 106 (262)
T PF00398_consen 100 LVVGNLP 106 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEec
Confidence 8888777
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.83 E-value=0.41 Score=49.27 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=54.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC----CCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN----QKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N----~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+++-+||++.+|.|++...+.+.+ ..+.+.++|+++...+..+.++...+ .+...++.+|..++... .
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-------~ 142 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-------T 142 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-------C
Confidence 445599999999999887776654 12579999999999888888764332 12333444454433211 1
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
.+.+|+|+..++
T Consensus 143 ~~~yDvIi~D~~ 154 (270)
T TIGR00417 143 ENTFDVIIVDST 154 (270)
T ss_pred CCCccEEEEeCC
Confidence 257999999865
No 169
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=90.79 E-value=0.19 Score=49.86 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=56.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+||||.||.|-.+++..++|- +.|++.|+++.+....+.|...+. -...+...|+.. ..+.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~ang-v~i~~~~~d~~g-----------~~~~~D 144 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANG-VSILFTHADLIG-----------SPPAFD 144 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhcc-ceeEEeeccccC-----------CCccee
Confidence 478899999999999999999997 579999999999888887754332 122223333332 125677
Q ss_pred EEEEcCCCCccccC
Q 008350 523 LVIGGSPCNNLAGS 536 (569)
Q Consensus 523 lliGGpPCQ~fS~a 536 (569)
+|+.|-=|=+.+-+
T Consensus 145 l~LagDlfy~~~~a 158 (218)
T COG3897 145 LLLAGDLFYNHTEA 158 (218)
T ss_pred EEEeeceecCchHH
Confidence 77777766665543
No 170
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.58 E-value=0.52 Score=46.72 Aligned_cols=75 Identities=27% Similarity=0.261 Sum_probs=49.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...++||+.||.|.+...+.+.|. .++++|+++.+....+.+....+. ...+...|+.++... ..+.+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~fD 116 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE-------HPGQFD 116 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh-------cCCCcc
Confidence 467899999999999999988874 489999999988777765443222 222333444333210 115688
Q ss_pred EEEEcC
Q 008350 523 LVIGGS 528 (569)
Q Consensus 523 lliGGp 528 (569)
+|+...
T Consensus 117 ~Ii~~~ 122 (233)
T PRK05134 117 VVTCME 122 (233)
T ss_pred EEEEhh
Confidence 887653
No 171
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=90.56 E-value=0.47 Score=36.09 Aligned_cols=34 Identities=38% Similarity=0.573 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhc--CCCCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERC--GPNTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~--G~~a~~~~l~ 168 (569)
++-+..|+++||++.||..|+.+. +++.++++++
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHH
Confidence 355788999999999999999999 7888877764
No 172
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=90.49 E-value=0.65 Score=47.02 Aligned_cols=67 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-Ccccccccccccc
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLD 507 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~ 507 (569)
.+...+|||+=||.|.....+.+. ..+--.++++|+++.+++..+.+....+.. ...++.+|+.++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~ 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC
Confidence 345678999999999998887662 111136899999999998888776543332 3456777776653
No 173
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.42 E-value=0.37 Score=52.63 Aligned_cols=86 Identities=17% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCCcceeccccChhHHHHHHHH----cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHR----LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~----aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.|++|++|-.||=+..+.. .| .++|+|.+..-++.+..|.......++.+.+.|..++..+.+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~----- 310 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTG----VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP----- 310 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCc----eEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC-----
Confidence 4578999999999996665444 46 6999999999999999998888888888889999887644432
Q ss_pred cCCeeEEEEcCCCCccccCC
Q 008350 518 FGGFDLVIGGSPCNNLAGSN 537 (569)
Q Consensus 518 ~g~~DlliGGpPCQ~fS~ag 537 (569)
+.||=|...-||.|.-...
T Consensus 311 -~~fDRVLLDAPCSGtgvi~ 329 (460)
T KOG1122|consen 311 -GSFDRVLLDAPCSGTGVIS 329 (460)
T ss_pred -cccceeeecCCCCCCcccc
Confidence 4699999999998854443
No 174
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=90.36 E-value=0.43 Score=46.22 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVR 485 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~ 485 (569)
+.+-.|||.|+|.|+..++..++| +..+++|+++..++...
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhc
Confidence 446779999999999999999999 56899999999887653
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=90.27 E-value=0.59 Score=47.33 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRN 482 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~ 482 (569)
.+.+++|+-||.|+++..+.+.|. +.|+|+|+++....
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHH
Confidence 456899999999999999999985 58999999996443
No 176
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=90.27 E-value=0.68 Score=38.12 Aligned_cols=69 Identities=28% Similarity=0.341 Sum_probs=48.8
Q ss_pred eccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEc
Q 008350 448 LSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 448 lDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGG 527 (569)
||+=||.|-....+.+.+. ..++++|+++...+..+.+.... +..+..+|++++.... +.+|+|+..
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~--------~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPD--------NSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-T--------T-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcccc--------ccccccccc
Confidence 5788999999999999832 47999999999988887764322 2337888988886432 579999765
Q ss_pred CC
Q 008350 528 SP 529 (569)
Q Consensus 528 pP 529 (569)
.=
T Consensus 68 ~~ 69 (95)
T PF08241_consen 68 SV 69 (95)
T ss_dssp SH
T ss_pred cc
Confidence 43
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=90.12 E-value=0.59 Score=51.89 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=50.8
Q ss_pred CcceeccccChhHHHHHHHHcCC---ceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 444 GINVLSLFSGIGGAEVALHRLGV---RMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi---~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
...|+|+=||.|.++....+||- ....|+|||.++.|..+++.....++. ..+.++.+|++++... .
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---------e 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---------E 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---------S
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---------C
Confidence 46799999999999987766651 125799999999999887543222333 3467889999999853 2
Q ss_pred CeeEEE
Q 008350 520 GFDLVI 525 (569)
Q Consensus 520 ~~Dlli 525 (569)
++||||
T Consensus 258 kvDIIV 263 (448)
T PF05185_consen 258 KVDIIV 263 (448)
T ss_dssp -EEEEE
T ss_pred ceeEEE
Confidence 689886
No 178
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=89.93 E-value=0.62 Score=46.26 Aligned_cols=71 Identities=23% Similarity=0.151 Sum_probs=49.6
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
--+++++=||+|-++..|...+ ..+.++|+++.|+...+... ...+++.+...|+.+..+. +.||+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl--~~~~~V~~~~~dvp~~~P~---------~~FDL 109 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERL--AGLPHVEWIQADVPEFWPE---------GRFDL 109 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHT--TT-SSEEEEES-TTT---S---------S-EEE
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhc--CCCCCeEEEECcCCCCCCC---------CCeeE
Confidence 3569999999999999998876 68999999999998887653 3456777888888765422 57888
Q ss_pred EEEcC
Q 008350 524 VIGGS 528 (569)
Q Consensus 524 liGGp 528 (569)
|+.+-
T Consensus 110 IV~SE 114 (201)
T PF05401_consen 110 IVLSE 114 (201)
T ss_dssp EEEES
T ss_pred EEEeh
Confidence 87654
No 179
>PTZ00146 fibrillarin; Provisional
Probab=89.92 E-value=0.66 Score=48.75 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+||||-||.|+++..+....-+--.|+|||+++.+.+.+..-.. ..++..++.+|++.-. .+... .+.+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~r~NI~~I~~Da~~p~--~y~~~---~~~v 203 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--KRPNIVPIIEDARYPQ--KYRML---VPMV 203 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--hcCCCEEEECCccChh--hhhcc---cCCC
Confidence 456789999999999999888752111379999999765433332211 1245567788887422 11111 1468
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+.+-.
T Consensus 204 DvV~~Dva 211 (293)
T PTZ00146 204 DVIFADVA 211 (293)
T ss_pred CEEEEeCC
Confidence 99988773
No 180
>PRK06922 hypothetical protein; Provisional
Probab=89.91 E-value=0.53 Score=54.38 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=55.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+.||.|.+...+.+..-. ..++++|+++.+++.++.+....+ .+..++++|+.++. ..++ .+.+|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~-~kVtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp-~~fe-----deSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETED-KRIYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLS-SSFE-----KESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCc-cccC-----CCCEE
Confidence 3678999999999998888764322 368999999999888776543222 23345677877653 1111 25799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+.+++-.
T Consensus 490 vVVsn~vLH 498 (677)
T PRK06922 490 TIVYSSILH 498 (677)
T ss_pred EEEEchHHH
Confidence 999876543
No 181
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=89.78 E-value=0.65 Score=44.38 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=51.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHHHHh-ccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQMIN-AFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~~~~-~~g~ 520 (569)
+..+++||.|+.||++..+.+.+.....|+|+|+.+.. ..++...+.+|+.+.... .+.+.+. ..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence 46999999999999999988887434689999997751 234566788999776432 2332222 1258
Q ss_pred eeEEEEc--CCCCcc
Q 008350 521 FDLVIGG--SPCNNL 533 (569)
Q Consensus 521 ~DlliGG--pPCQ~f 533 (569)
+|+|+.+ |+|++.
T Consensus 92 ~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD 106 (181)
T ss_dssp ESEEEE-------SS
T ss_pred cceeccccccCCCCc
Confidence 9999965 467664
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=89.74 E-value=1.1 Score=46.31 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=61.2
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-+|+++=.|.|.++..|.+.+ ..|.|+|+|+..+..++.... ...+..++.+|+-+++...+. .++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~-------~~~~ 98 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLA-------QPYK 98 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhc-------CCCE
Confidence 6789999999999999999998 469999999999998886532 234566889999988854431 4678
Q ss_pred EEEcCCCCc
Q 008350 524 VIGGSPCNN 532 (569)
Q Consensus 524 liGGpPCQ~ 532 (569)
|+|--|=+=
T Consensus 99 vVaNlPY~I 107 (259)
T COG0030 99 VVANLPYNI 107 (259)
T ss_pred EEEcCCCcc
Confidence 888888653
No 183
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.71 E-value=0.43 Score=52.75 Aligned_cols=78 Identities=28% Similarity=0.236 Sum_probs=53.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
..+|+|+-||.|.++..|.+.+ ..|+++|+++.+++..+... ...++..++++|+...... ++ .+.+|+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~-~~-----~~~fD~ 106 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLN-IS-----DGSVDL 106 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccC-CC-----CCCEEE
Confidence 4589999999999999999876 36899999999886544321 1133455777888643211 11 146899
Q ss_pred EEEcCCCCc
Q 008350 524 VIGGSPCNN 532 (569)
Q Consensus 524 liGGpPCQ~ 532 (569)
|+...++.-
T Consensus 107 I~~~~~l~~ 115 (475)
T PLN02336 107 IFSNWLLMY 115 (475)
T ss_pred EehhhhHHh
Confidence 988876653
No 184
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=89.64 E-value=0.88 Score=42.91 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=49.4
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCC---ChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASS---SKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~s---s~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
..|..-||+.+.|..||++..+++.+.+.+.+-+.-. ..... -..+++..|+.=||+-+.|..||++..+
T Consensus 83 ~~L~~kGi~~~~I~~~l~~~~~d~~e~a~~~~~k~~~-~~~~~~~~~k~Ki~~~L~rkGF~~~~I~~~l~~~~~ 155 (157)
T PRK00117 83 QELRQKGVDREIIEEALAELDIDWEELARELARKKFR-RPLPDDAKEKAKLVRFLARRGFSMDVIQRVLRNALD 155 (157)
T ss_pred HHHHHcCCCHHHHHHHHHHcCccHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHhhhc
Confidence 4577889999999999999874343333333333211 11222 3467889999999999999999998765
No 185
>PRK04148 hypothetical protein; Provisional
Probab=89.29 E-value=1.3 Score=41.33 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=45.0
Q ss_pred CcceeccccChhH-HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh
Q 008350 444 GINVLSLFSGIGG-AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN 509 (569)
Q Consensus 444 ~i~vlDLFSGiGG-~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~ 509 (569)
+.+++++=+|.|. ++..|.+.|+ .|.++|+++.+++..+.+ +..+..+|+.+-+.+
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLE 73 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHH
Confidence 4789999999886 8889999996 589999999998876643 355778888877643
No 186
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=89.28 E-value=0.71 Score=46.75 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+=||.|.++..+.+..-. ..|+++|+++...+..+.. +..+..+|+.++... +.+|
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~-~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~---------~~fD 91 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPG-AVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPK---------PDTD 91 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCC---------CCce
Confidence 4578999999999999998886311 3689999999988766531 345667777655311 3577
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+.....+
T Consensus 92 ~v~~~~~l~ 100 (255)
T PRK14103 92 VVVSNAALQ 100 (255)
T ss_pred EEEEehhhh
Confidence 777765543
No 187
>PLN02476 O-methyltransferase
Probab=88.97 E-value=1.1 Score=46.91 Aligned_cols=84 Identities=7% Similarity=0.071 Sum_probs=60.3
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.-++|++.+|+|..++.+.++ +-. ..++++|.++...+..+.||...+.. ...++.+|..++..+...+ ...+.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~-G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~--~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPES-GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN--GEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--ccCCC
Confidence 4568999999999999988774 111 25899999999999999999877664 3456678877654321110 01257
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
||+|+.+.+
T Consensus 195 FD~VFIDa~ 203 (278)
T PLN02476 195 YDFAFVDAD 203 (278)
T ss_pred CCEEEECCC
Confidence 999988876
No 188
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=88.57 E-value=1.2 Score=46.86 Aligned_cols=118 Identities=21% Similarity=0.355 Sum_probs=59.6
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCC---CchhH
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGE---ENTDS 78 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~---~~~d~ 78 (569)
++.+.+|||+++.+.++|..+- .+|. ......-...++.|.++||+.+++.+++.++-. -+.+.
T Consensus 143 v~~l~~lG~~~~~~~~vi~~~P---------~~l~----~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~ 209 (345)
T PF02536_consen 143 VEFLKELGFDPEKIGRVIAKNP---------RLLL----SDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEK 209 (345)
T ss_dssp HHHHCCCTSSHHHHCCCHHHHH---------HHHC----GSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC
T ss_pred HHHHHHhCCCchhhcccccccc---------hhhc----cccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccc
Confidence 3456677777777766666541 1222 122233456688899999999999999999753 01222
Q ss_pred HHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCC----CchHHHHHHHHhCCCCHHHHHHH
Q 008350 79 ILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPD----PDKEEKLVSLASMGYSVQEASIA 154 (569)
Q Consensus 79 ~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~----s~~~~k~~~L~~Mgf~e~e~~~A 154 (569)
+++....+....-.... . -. ...++.. ..-..|+..|..+||+++|+...
T Consensus 210 ~l~~~~~l~~~~~~~~~--~-------------~i-----------~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~m 263 (345)
T PF02536_consen 210 ILEPVLYLLSSGGVEEE--R-------------VI-----------KKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKM 263 (345)
T ss_dssp -----------------------------------------------------THHHHHHHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccc--c-------------cc-----------cccccccccchHhHHHHHHHHHHhcCcHHHHHHH
Confidence 33332222211110000 0 00 0011111 12356789999999999999999
Q ss_pred HHhc
Q 008350 155 MERC 158 (569)
Q Consensus 155 i~r~ 158 (569)
+.+|
T Consensus 264 v~~~ 267 (345)
T PF02536_consen 264 VRRF 267 (345)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9888
No 189
>PLN02366 spermidine synthase
Probab=88.07 E-value=0.95 Score=47.85 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=59.6
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHh
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
.+++-+||++=+|.|++...+.+.. .++.|..||+|+..++..+.++... +.+...++++|..++..+ ..
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~---- 162 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-AP---- 162 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-cc----
Confidence 3567889999999999888887762 2367999999999999888887542 234566777887655421 11
Q ss_pred ccCCeeEEEEcCC
Q 008350 517 AFGGFDLVIGGSP 529 (569)
Q Consensus 517 ~~g~~DlliGGpP 529 (569)
.+.+|+|+...+
T Consensus 163 -~~~yDvIi~D~~ 174 (308)
T PLN02366 163 -EGTYDAIIVDSS 174 (308)
T ss_pred -CCCCCEEEEcCC
Confidence 147999999754
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=87.96 E-value=1.8 Score=45.66 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=58.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+++|.=||.||.+..+.+..-.--.|+|+|.|+.+.+..+..... .....++++|..++. ..+.+ ....+|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~-~~l~~---~~~~vDg 93 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLK-EVLAE---GLGKVDG 93 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHH-HHHHc---CCCccCE
Confidence 45799999999999999988742112699999999999887755422 224557778777764 22221 1237999
Q ss_pred EEEcCCCCc
Q 008350 524 VIGGSPCNN 532 (569)
Q Consensus 524 liGGpPCQ~ 532 (569)
|+...=|..
T Consensus 94 Il~DLGvSs 102 (296)
T PRK00050 94 ILLDLGVSS 102 (296)
T ss_pred EEECCCccc
Confidence 998875554
No 191
>PRK04457 spermidine synthase; Provisional
Probab=87.73 E-value=0.85 Score=46.90 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=56.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+-+|+++=+|.|.+...+.+.--. ..+.++|+++...+..+.++.... .+...++.+|..++... . .+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~------~~~ 136 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-H------RHS 136 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-C------CCC
Confidence 34567999999999999888664322 368999999999999988865332 34556778887765421 1 147
Q ss_pred eeEEEEc
Q 008350 521 FDLVIGG 527 (569)
Q Consensus 521 ~DlliGG 527 (569)
+|+|+.+
T Consensus 137 yD~I~~D 143 (262)
T PRK04457 137 TDVILVD 143 (262)
T ss_pred CCEEEEe
Confidence 8999975
No 192
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=87.28 E-value=2 Score=45.00 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=51.8
Q ss_pred hhhhhhccCCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-Ccccccccccccc
Q 008350 433 HLSVLKEMYPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLD 507 (569)
Q Consensus 433 ~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~ 507 (569)
.+...+.....+.+|||+=||.|++.+=+.+. |. .|+++.+++...+-++.-....+.. .+.+...|.+++.
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc
Confidence 33334556678999999999999999865554 74 6999999998877666644444444 4556677777765
No 193
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=87.26 E-value=1.2 Score=40.41 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=46.8
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
+++|+-||.|-+++.+.+.+-. ..++++|.++.+...++.++..++.++..++...+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 5899999999999999998754 37999999999999988887655545455555555543
No 194
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=87.12 E-value=1.3 Score=43.71 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=57.2
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVI 525 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dlli 525 (569)
.+||+=||-|.+-+.+.+.--+ ..++++|+....+..........+.++..++++|...+....++ .+.+|-|.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~-----~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP-----PGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST-----TTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc-----CCchheEE
Confidence 6999999999999888776444 47899999998876655555556788888999999886543322 36899999
Q ss_pred EcCCCCcc
Q 008350 526 GGSPCNNL 533 (569)
Q Consensus 526 GGpPCQ~f 533 (569)
.-+|+-=+
T Consensus 94 i~FPDPWp 101 (195)
T PF02390_consen 94 INFPDPWP 101 (195)
T ss_dssp EES-----
T ss_pred EeCCCCCc
Confidence 99998743
No 195
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=86.15 E-value=1.2 Score=44.06 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=45.8
Q ss_pred hhhhccCCCCcceeccccChhHHHHHHHH-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 435 SVLKEMYPDGINVLSLFSGIGGAEVALHR-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 435 s~lk~~~~~~i~vlDLFSGiGG~slGl~~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
..+....+.+-+||||=||-|.+=.-|.+ .+. ...++|+++..+..... .|..++.+|+.+-
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~-------rGv~Viq~Dld~g 67 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVA-------RGVSVIQGDLDEG 67 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHH-------cCCCEEECCHHHh
Confidence 34455667789999999999997766666 454 58999999998765543 2566788888753
No 196
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=85.97 E-value=2.1 Score=42.79 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCCcceeccccChhHHHHHHHHcC-CceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG-VRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG-i~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+=||.|.+...+.+.. .+-..++++|+++.+++..+.+....+. ....++.+|+.++.. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~ 121 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------K 121 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----------C
Confidence 456789999999999998887642 1113689999999998888776543221 234567788876642 2
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+++.+...+
T Consensus 122 ~~d~v~~~~~l~ 133 (239)
T TIGR00740 122 NASMVILNFTLQ 133 (239)
T ss_pred CCCEEeeecchh
Confidence 456666555433
No 197
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=85.53 E-value=2 Score=45.57 Aligned_cols=63 Identities=22% Similarity=0.157 Sum_probs=42.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-CCCCcccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTLIDFADVQQLD 507 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~~~~~DI~~i~ 507 (569)
.+-+|+|+=||.|.+...+...|. +.|+++|.++.....++...... +..+..++.+|+.++.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 356899999999999999998886 36999999987653322111011 1234456667776654
No 198
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=85.43 E-value=1.4 Score=33.44 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=25.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHh--CCCchhHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQEN--GEENTDSILETLL 84 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~--G~~~~d~~le~Ll 84 (569)
++++..|+.+||++.+|.+|+.+. +++ .-+|.++
T Consensus 4 ~d~~~AL~~LGy~~~e~~~av~~~~~~~~---~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLGYSKAEAQKAVSKLLEKPG---MDVEELI 39 (47)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHHHSTT---S-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhcCCC---CCHHHHH
Confidence 567889999999999999999999 442 2355555
No 199
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=85.26 E-value=2.5 Score=41.18 Aligned_cols=86 Identities=26% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.++-|++|=.|.|-++.++-+.|++-+.+.++|++++-...+... +++..++.||..++... +... ....+|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~-l~e~--~gq~~D 119 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTT-LGEH--KGQFFD 119 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHH-Hhhc--CCCeee
Confidence 567899999999999999999999889999999999988777654 56777899998887632 2111 124689
Q ss_pred EEEEcCCCCccccC
Q 008350 523 LVIGGSPCNNLAGS 536 (569)
Q Consensus 523 lliGGpPCQ~fS~a 536 (569)
.+|.|-|--.|+..
T Consensus 120 ~viS~lPll~~P~~ 133 (194)
T COG3963 120 SVISGLPLLNFPMH 133 (194)
T ss_pred eEEeccccccCcHH
Confidence 99999998888764
No 200
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=84.41 E-value=1.7 Score=43.01 Aligned_cols=83 Identities=24% Similarity=0.303 Sum_probs=57.7
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
+||||=||-|-+=..|++.|+.- .+.++|.++.|+..++.-.+...+++ ..+...||.+-+. .. +.+|+|
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~--~~------~qfdlv 140 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF--LS------GQFDLV 140 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc--cc------cceeEE
Confidence 89999999999999999999873 48999999999987554444444444 4566778876532 12 567777
Q ss_pred EEcCCCCccccCC
Q 008350 525 IGGSPCNNLAGSN 537 (569)
Q Consensus 525 iGGpPCQ~fS~ag 537 (569)
.------..|..+
T Consensus 141 lDKGT~DAisLs~ 153 (227)
T KOG1271|consen 141 LDKGTLDAISLSP 153 (227)
T ss_pred eecCceeeeecCC
Confidence 6433333444443
No 201
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=83.69 E-value=1.3 Score=48.57 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=42.5
Q ss_pred hhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 437 lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
+-.++..+-.|.|+|||+|-+++.+..-| ..|+|+|.++.+.+.++.|..
T Consensus 243 lsg~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 243 LSGLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred HhhccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhcc
Confidence 33466667889999999999999998888 479999999999999988754
No 202
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=83.62 E-value=3.7 Score=42.91 Aligned_cols=89 Identities=19% Similarity=0.014 Sum_probs=57.7
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCc--ccccccccccchhhHHHHHhc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT--LIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~--~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+.++|||=||.|..+..|.+++.+...++++|+++......+.+... .+|+. ..+++|+.+... +. ..
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i~gD~~~~~~--~~---~~ 133 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGICADFTQPLA--LP---PE 133 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEEEEcccchhh--hh---cc
Confidence 344567899999999999999988742113689999999987766654332 23443 346788876421 11 11
Q ss_pred c--CCeeEEEEcCCCCccc
Q 008350 518 F--GGFDLVIGGSPCNNLA 534 (569)
Q Consensus 518 ~--g~~DlliGGpPCQ~fS 534 (569)
. +...+++.|.++..|+
T Consensus 134 ~~~~~~~~~~~gs~~~~~~ 152 (301)
T TIGR03438 134 PAAGRRLGFFPGSTIGNFT 152 (301)
T ss_pred cccCCeEEEEecccccCCC
Confidence 1 2455777777776665
No 203
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.59 E-value=2.6 Score=46.59 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=43.3
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
..+.+|||+=||.|++...+.+. |. .|+++|+++.+....+.+.... .....+..+|+...
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~-~~~v~~~~~d~~~~ 326 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGR-KCSVEFEVADCTKK 326 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcC-CCceEEEEcCcccC
Confidence 34678999999999998877764 43 5899999999988776653211 12344566776554
No 204
>PRK11524 putative methyltransferase; Provisional
Probab=83.01 E-value=1.7 Score=45.15 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=37.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
..+-.|||-|+|.|+-.++.+++| +..+++|+++..++..+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 456779999999999999999999 5689999999988877654
No 205
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=82.88 E-value=2.8 Score=42.96 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=50.2
Q ss_pred CcceeccccChhHHHHHHHHcCCc--eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVR--MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~--~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+|||+=||.|.+...+.+..-. ...++++|+++.+++..+.. .++..+..+|+.++.... +.+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~~~--------~sf 152 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPFAD--------QSL 152 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCCcC--------Cce
Confidence 467999999999999888764211 02589999999998876643 345667788887765321 468
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 153 D~I~~ 157 (272)
T PRK11088 153 DAIIR 157 (272)
T ss_pred eEEEE
Confidence 88875
No 206
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=82.40 E-value=2.6 Score=45.58 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=63.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCcee----EEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHH-h
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMK----NVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMI-N 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k----~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~-~ 516 (569)
..+-+|||++|-.||=++.+.++... . .|+|+|.+..-.+.+..-....+.+...+...|+.......+.+.- .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~-~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHK-DPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhc-CCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 45788999999999999999888753 3 6999999998777666543344555555555666555433210000 0
Q ss_pred ccCCeeEEEEcCCCCcccc
Q 008350 517 AFGGFDLVIGGSPCNNLAG 535 (569)
Q Consensus 517 ~~g~~DlliGGpPCQ~fS~ 535 (569)
++-.||=|.+.-||.+=+.
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt 251 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGT 251 (375)
T ss_pred hhhhcceeEEecccCCCcc
Confidence 1246999999999998644
No 207
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=82.26 E-value=4 Score=42.41 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=41.3
Q ss_pred hccCCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLD 507 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~ 507 (569)
+.....+.+|||+=||.||+.+-+.+. |. .|.++.+++.-.+-.+......+..+ +.+.+.|.+++.
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 334567889999999999999988777 86 58999999987776665554444332 346666766554
No 208
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=81.89 E-value=1.1 Score=44.88 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=31.0
Q ss_pred ccCC--CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH
Q 008350 439 EMYP--DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 439 ~~~~--~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~ 486 (569)
..+| ..-+++|+|||.|...+.+...+ ..|+++|+++.....++.
T Consensus 14 ~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 14 ELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKA 60 (260)
T ss_dssp HHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHH
T ss_pred HHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHH
Confidence 3445 57889999999999999887655 478999999988777663
No 209
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=81.75 E-value=3.1 Score=44.63 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=48.2
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+-||.|.+.+.+.+. +- ..+.++|+++...+..+.+.. ..+..++.+|+.++... .+.+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~--------~~sF 179 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFP--------TDYA 179 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCC--------CCce
Confidence 4578999999999998888664 22 368999999998877766532 12344567777655321 1346
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 180 DvVIs 184 (340)
T PLN02490 180 DRYVS 184 (340)
T ss_pred eEEEE
Confidence 76665
No 210
>PRK14134 recX recombination regulator RecX; Provisional
Probab=81.68 E-value=12 Score=39.17 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=48.6
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccC--CC-C---ChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSS--AS-S---SKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~--~~-s---s~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
..|..-|.+.++|..|+.+..+++...++..|+.=.-... .. + ...++...|+.=||+-+.+..||+++-.
T Consensus 132 ~eL~qKGI~~~iIe~al~~~~~e~e~e~a~~l~~Kk~~~~~~~~~~~~k~k~Kl~~~L~rrGFs~~~I~~vl~~~~~ 208 (283)
T PRK14134 132 YTLLNKGIKENIIIEKINNIDEEKEKKVAYKLAEKKYKILILSEKNKFKIYKKLGPYLISRGYSSNIAEWILNELIK 208 (283)
T ss_pred HHHHHCCCCHHHHHHHHHhCChhhHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 3567789999999999999865554344444432111111 11 1 2356788999999999999999998854
No 211
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=81.37 E-value=4.5 Score=38.84 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=47.0
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhh-H-HHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANR-I-EQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~-l-~~~~~~ 517 (569)
..+.+||+|=||+|-.++.+..+ +. ..|++-|.++ +...++.|...++. ....+ .+..++..+ + .... .
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v---~v~~L~Wg~~~~~~~~-~ 116 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNE-VLELLRRNIELNGSLLDGRV---SVRPLDWGDELDSDLL-E 116 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHH-S
T ss_pred cCCceEEEECCccchhHHHHHhccCC--ceEEEeccch-hhHHHHHHHHhccccccccc---cCcEEEecCccccccc-c
Confidence 45679999999999999998888 43 5799999999 88888888764431 11111 233332211 1 1111 2
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
...+|+|+|+=-
T Consensus 117 ~~~~D~IlasDv 128 (173)
T PF10294_consen 117 PHSFDVILASDV 128 (173)
T ss_dssp -SSBSEEEEES-
T ss_pred cccCCEEEEecc
Confidence 257999998754
No 212
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=81.33 E-value=4.7 Score=41.56 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=53.2
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLD 507 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~ 507 (569)
....+.+|++.=.|.|.++..|.++--+.-.|++.|+.+...++++.|+...+..+ +.+..+||.+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 34457899999999999999999742222479999999999999999988766655 556678887664
No 213
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=81.13 E-value=4.5 Score=44.02 Aligned_cols=44 Identities=30% Similarity=0.407 Sum_probs=35.7
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~ 488 (569)
..+.+|||+=||.|++..-+.+. |. .|.++|+++...+..+.+.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERC 210 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHh
Confidence 45678999999999999877764 54 5899999999888777653
No 214
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=81.10 E-value=1.4 Score=43.59 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=46.2
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA 508 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~ 508 (569)
-++.||=+|.|-++.-...+. +.|+|+|.++.-.+.+..|..-.+.-+..++.+|..+++.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 568999999999998666653 6899999999877666666433344456678888887764
No 215
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=81.06 E-value=3.5 Score=40.49 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=39.5
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-Cccccccccc
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQ 504 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~ 504 (569)
+|||+=||.|++...+.+..-. -.+.++|+++......+.+....+.. ...++..|+.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~-~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~ 60 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPH-LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 5899999999998888765322 25889999999887777665433221 1234555653
No 216
>PRK14136 recX recombination regulator RecX; Provisional
Probab=80.64 E-value=14 Score=39.19 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=77.8
Q ss_pred ccccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhH
Q 008350 2 IDHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDS 78 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~ 78 (569)
...|...||+++.|..||+ ++|==|...-.+.++..... .-..-.+...|..-|.+.+.|..||.++.++..+
T Consensus 183 r~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~~---kkGp~rIrqELrQKGId~eLIEqALeeieEDE~E- 258 (309)
T PRK14136 183 ARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRAS---RVGSARIVSELKRHAVGDALVESVGAQLRETEFE- 258 (309)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhh---chhHHHHHHHHHHcCCCHHHHHHHHHhccHhHHH-
Confidence 3467778999998888875 45666777777777754221 1234456689999999999999999988442222
Q ss_pred HHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 79 ILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 79 ~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
.+..|+.-.. ..... + ..++.+.+..|+.-||+-+.+..+|..+
T Consensus 259 ~A~~L~eKK~----~~~~~---------------------------d-----~kek~K~iRfL~rRGFS~D~I~~vLk~~ 302 (309)
T PRK14136 259 RAQAVWRKKF----GALPQ---------------------------T-----PAERAKQARFLAARGFSSATIVKLLKVG 302 (309)
T ss_pred HHHHHHHHHh----cccCc---------------------------C-----HHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 2233332111 10000 0 0112344689999999999999999887
Q ss_pred CCC
Q 008350 159 GPN 161 (569)
Q Consensus 159 G~~ 161 (569)
..+
T Consensus 303 ~de 305 (309)
T PRK14136 303 DDE 305 (309)
T ss_pred hhc
Confidence 654
No 217
>PRK13699 putative methylase; Provisional
Probab=80.47 E-value=2.8 Score=42.29 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
..+-.|+|-|||.|+.-++..++|- ..+++|+++..+++....
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 3466799999999999999999995 578999999887766544
No 218
>PLN03196 MOC1-like protein; Provisional
Probab=79.85 E-value=4.2 Score=45.69 Aligned_cols=71 Identities=8% Similarity=0.118 Sum_probs=46.1
Q ss_pred ccccccCCCCHHHHHHHHHHh-------CCCCHHHHHHHHHhcccccC---------C---CCChh----HHHHHHHhCC
Q 008350 2 IDHFVGMGFSEEVVAKAIQEN-------GEQNTDLILEALLKHSASSS---------A---SSSKS----KLIDHFVGMG 58 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~-------g~~~~~~ile~ll~~~~~~~---------~---~ss~~----~~~~~~~~MG 58 (569)
+..|.++|++++.|.|+|..+ -+.+..-.+++|...-.... + +.+-+ ..+..|..+|
T Consensus 200 v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elG 279 (487)
T PLN03196 200 VAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFG 279 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcC
Confidence 456788999999999988754 23344455555544221110 1 22333 2466889999
Q ss_pred CCHHHHHHHHHHhC
Q 008350 59 FSVDMVAKAIQENG 72 (569)
Q Consensus 59 F~~~~v~~Ai~~~G 72 (569)
++++.+.+.|.++-
T Consensus 280 v~~~~i~~lI~~~P 293 (487)
T PLN03196 280 VRKEALPSVIAQYP 293 (487)
T ss_pred CCHHHHHHHHHhCC
Confidence 99999999998863
No 219
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=79.47 E-value=15 Score=33.05 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=64.7
Q ss_pred ccCCCCHHHHHHHHHH---hCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc-hhHHHH
Q 008350 6 VGMGFSEEVVAKAIQE---NGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN-TDSILE 81 (569)
Q Consensus 6 ~~MGf~~~~v~k~i~e---~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~-~d~~le 81 (569)
..-||+++.|..||+. .|==|.....+..+.... ...+-+.-.+...|..-|.+.+.+..|++ +.+ .+.+++
T Consensus 2 ~~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~-~~~~~G~~~I~~~L~~kGi~~~~i~~~l~---~~~~~e~a~~ 77 (121)
T PF02631_consen 2 KRKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRL-RRKGKGPRRIRQKLKQKGIDREIIEEALE---EYDEEEEALE 77 (121)
T ss_dssp HHTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH-HHTT--HHHHHHHHHHTT--HHHHHHHHT---CS-HHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc-ccccccHHHHHHHHHHHCCChHHHHHHHH---HhhHHHHHHH
Confidence 3569999999999865 577777777776666222 12344556777899999999999999999 333 333333
Q ss_pred HHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 82 TLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMER 157 (569)
Q Consensus 82 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r 157 (569)
.+-. ......... + ...+..-+..|+.-||+.+.+..||.+
T Consensus 78 ~~~k-k~~~~~~~~----------------------------~------~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 78 LAEK-KYRRYRKPS----------------------------D------RKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHH-HHHHTTTS-----------------------------C------HHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHH-HHhcccCCC----------------------------C------HHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 3222 222110000 0 011223358999999999999999987
No 220
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=79.00 E-value=4.8 Score=41.33 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=57.8
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-Ccccccccccccch-hhHHHHHhc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDA-NRIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~-~~l~~~~~~ 517 (569)
....+.+|++-=.|.|.+++.|.++-.+--.|+..|+.+.-.+.++.|+...+.. .+.+.++||.+--. +.+.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~----- 111 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELE----- 111 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-T-----
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccccc-----
Confidence 3445788999999999999999985221236999999999999999998877665 34677899864221 1222
Q ss_pred cCCeeEEEEcCCCC
Q 008350 518 FGGFDLVIGGSPCN 531 (569)
Q Consensus 518 ~g~~DlliGGpPCQ 531 (569)
..+|.|+.+-|.-
T Consensus 112 -~~~DavfLDlp~P 124 (247)
T PF08704_consen 112 -SDFDAVFLDLPDP 124 (247)
T ss_dssp -TSEEEEEEESSSG
T ss_pred -CcccEEEEeCCCH
Confidence 4688888887753
No 221
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=77.94 E-value=5.2 Score=42.91 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=57.6
Q ss_pred chhhhhhhhhccCC-CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccccccc
Q 008350 429 TVAYHLSVLKEMYP-DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQL 506 (569)
Q Consensus 429 t~~~~ls~lk~~~~-~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i 506 (569)
|-.|+..++.+... .+-.|+|.=||.|-++.=..++|- +.|+|||-++-|..+-+. ...+|... ..++.|-|+++
T Consensus 162 TgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA~~L-v~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYARKL-VASNNLADRITVIPGKIEDI 238 (517)
T ss_pred hhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHHHHH-HhcCCccceEEEccCccccc
Confidence 33577666655432 234499999999999999999997 589999998876544221 11233332 23556666666
Q ss_pred chhhHHHHHhccCCeeEEEEcC
Q 008350 507 DANRIEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 507 ~~~~l~~~~~~~g~~DlliGGp 528 (569)
. ++ .++|+||--|
T Consensus 239 e---LP------Ek~DviISEP 251 (517)
T KOG1500|consen 239 E---LP------EKVDVIISEP 251 (517)
T ss_pred c---Cc------hhccEEEecc
Confidence 4 22 4789998765
No 222
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=77.66 E-value=4.2 Score=43.66 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=43.7
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQL 506 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i 506 (569)
.-+|+|.=||.|-+|+=..+||- +.|+|||.+..|. ..+.....+++.+ ..++.+.|+++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~-~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIAD-FARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHH-HHHHHHHhcCccceEEEeecceEEE
Confidence 45699999999999999999995 6899999998773 3333333345544 34566777766
No 223
>PRK01581 speE spermidine synthase; Validated
Probab=76.86 E-value=4.2 Score=44.20 Aligned_cols=81 Identities=20% Similarity=0.126 Sum_probs=55.9
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH--h-----hcCCCCcccccccccccchhhHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW--E-----QTNQKGTLIDFADVQQLDANRIEQ 513 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~--~-----~~N~~~~~~~~~DI~~i~~~~l~~ 513 (569)
.+++-+||.+=+|.|+....+.+.. .++.|.+||+++..++..+.+. . ..+.+...++.+|..++...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS---- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----
Confidence 4567799999999988766555543 2357999999999988887521 1 11234566777887765422
Q ss_pred HHhccCCeeEEEEcCC
Q 008350 514 MINAFGGFDLVIGGSP 529 (569)
Q Consensus 514 ~~~~~g~~DlliGGpP 529 (569)
..+.+|+|+...|
T Consensus 223 ---~~~~YDVIIvDl~ 235 (374)
T PRK01581 223 ---PSSLYDVIIIDFP 235 (374)
T ss_pred ---cCCCccEEEEcCC
Confidence 1257999999965
No 224
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=76.62 E-value=5.9 Score=40.16 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=64.2
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
..++++=||-|.+-+++++..=+ ....++|+....+..+.......+.++..++++|..++...-++ .+.+|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~-----~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIP-----DGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCC-----CCCeeEE
Confidence 56999999999999999987655 47899999988766555444455555777889999888743222 2578999
Q ss_pred EEcCCCCccccCCC
Q 008350 525 IGGSPCNNLAGSNR 538 (569)
Q Consensus 525 iGGpPCQ~fS~ag~ 538 (569)
..-+|+- +=...+
T Consensus 124 ~i~FPDP-WpKkRH 136 (227)
T COG0220 124 YINFPDP-WPKKRH 136 (227)
T ss_pred EEECCCC-CCCccc
Confidence 9999984 444444
No 225
>PRK14136 recX recombination regulator RecX; Provisional
Probab=76.11 E-value=4.3 Score=42.94 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=48.7
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh-cccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK-HSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEE 74 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~-~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~ 74 (569)
..|..-|.+.++|..||++..++..+.+...+-+ |.......-..-+++..|+.-||+.+.|.++|+.+.++
T Consensus 233 qELrQKGId~eLIEqALeeieEDE~E~A~~L~eKK~~~~~~d~kek~K~iRfL~rRGFS~D~I~~vLk~~~de 305 (309)
T PRK14136 233 SELKRHAVGDALVESVGAQLRETEFERAQAVWRKKFGALPQTPAERAKQARFLAARGFSSATIVKLLKVGDDE 305 (309)
T ss_pred HHHHHcCCCHHHHHHHHHhccHhHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHCCCCHHHHHHHHHhchhc
Confidence 3466679999999999999844333333333333 22221112234577889999999999999999988763
No 226
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=75.72 E-value=9.1 Score=40.65 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNI 483 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t 483 (569)
.+.+|+|+=||.|.+...+...|. +.|+++|.++.....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQ 159 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHH
Confidence 356899999999999999988886 468999999976543
No 227
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=75.40 E-value=2.7 Score=43.73 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHH
Q 008350 57 MGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEE 136 (569)
Q Consensus 57 MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~ 136 (569)
--|.-+++.+|+-..|..-+.+.|-.|++|-..+..... -+.
T Consensus 39 ~d~d~~~I~~AlsavGGpqT~~ALsvLlafV~~g~~~~~--------------------------------------~et 80 (357)
T PF03216_consen 39 ADTDGKMIKRALSAVGGPQTNQALSVLLAFVTQGTNQDD--------------------------------------TET 80 (357)
T ss_pred CccchHHHHHHHHHcCCchHHHHHHHHHHHHHcCCChhh--------------------------------------hhh
Confidence 446778999999999999999999999999988764322 135
Q ss_pred HHHHHHhCCCCHHHHHHHHH-hcCCCCchhHHHHHHHHH
Q 008350 137 KLVSLASMGYSVQEASIAME-RCGPNTSIAELTDFICAA 174 (569)
Q Consensus 137 k~~~L~~Mgf~e~e~~~Ai~-r~G~~a~~~~l~D~i~aa 174 (569)
|.+-|..|||+.+++..|=. ..|.+.|..+|+..|.--
T Consensus 81 ~~kiL~dmgFkv~~~p~a~~~~agi~~P~~~lA~tv~~e 119 (357)
T PF03216_consen 81 KCKILTDMGFKVTQVPRATPIEAGIMMPMRKLAETVNNE 119 (357)
T ss_pred HHHHHHHhCceeEecccCCCcccchhchHHHHHHHhChh
Confidence 66779999999999887532 356677888887766443
No 228
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=75.35 E-value=7.5 Score=40.70 Aligned_cols=85 Identities=24% Similarity=0.204 Sum_probs=61.7
Q ss_pred hhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHH
Q 008350 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMI 515 (569)
Q Consensus 437 lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~ 515 (569)
.++....+-.||+.==|.|-++..+-++| +.|+|+|+|+..+.-+......+...+ -.++.+|+-+.+.
T Consensus 52 ~ka~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~------- 121 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL------- 121 (315)
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-------
Confidence 44555567789999999999999999999 689999999998877766543222112 2366777776652
Q ss_pred hccCCeeEEEEcCCCCccc
Q 008350 516 NAFGGFDLVIGGSPCNNLA 534 (569)
Q Consensus 516 ~~~g~~DlliGGpPCQ~fS 534 (569)
+.+|++|..-|-|=-|
T Consensus 122 ---P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 122 ---PRFDGCVSNLPYQISS 137 (315)
T ss_pred ---cccceeeccCCccccC
Confidence 4688888888877433
No 229
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=74.20 E-value=6.7 Score=35.67 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=35.2
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNI 483 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t 483 (569)
.+...+|||+=||.|.+...+++.|. .+.++|+++.+...
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh
Confidence 45678999999999999999999996 58999999988755
No 230
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.80 E-value=9.2 Score=38.40 Aligned_cols=61 Identities=25% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
..+.+||++=+|+|=.+.-+.+..- .|+++|+++.-++..+.|....+..++.+.++|-..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~ 131 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK 131 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc
Confidence 4568999999999999999999873 799999999988888888877777777777777553
No 231
>PLN02823 spermine synthase
Probab=72.81 E-value=6.2 Score=42.30 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
+++-+||-+=.|.|++..-+.+. +. +.+.+||+|+...+..+.++... ..+...++.+|..++...
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------- 172 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------- 172 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-------
Confidence 45567877766666665544443 33 57999999999999999887532 135566778887766522
Q ss_pred ccCCeeEEEEcC
Q 008350 517 AFGGFDLVIGGS 528 (569)
Q Consensus 517 ~~g~~DlliGGp 528 (569)
..+.+|+|+...
T Consensus 173 ~~~~yDvIi~D~ 184 (336)
T PLN02823 173 RDEKFDVIIGDL 184 (336)
T ss_pred CCCCccEEEecC
Confidence 125799999984
No 232
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=72.71 E-value=6.8 Score=41.10 Aligned_cols=69 Identities=20% Similarity=0.217 Sum_probs=54.4
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
.++++...|.. +.++.+|||+--.+-...-.++.+..+...+.-|+++-.++.+. +.||+++-.||=+-
T Consensus 165 tsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~------~kFDvfiTDPpeTi 233 (354)
T COG1568 165 TSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK------RKFDVFITDPPETI 233 (354)
T ss_pred hHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH------hhCCeeecCchhhH
Confidence 45667677775 78999999998877666665666676677888899998888776 48999999999763
No 233
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=72.53 E-value=4.3 Score=43.41 Aligned_cols=44 Identities=32% Similarity=0.487 Sum_probs=33.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
.+.+||||.||=||=-.=+..+++ ..++++|++..+++-.+..|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERY 105 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHH
Confidence 578999999999997777888887 58999999999987666655
No 234
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=72.07 E-value=10 Score=37.61 Aligned_cols=79 Identities=13% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
...++++=||.|-.+.-|.+.-...-...+.|+++.|+++-..-. ..|--+..+++.|+..-. . . +++|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA-~~n~~~~~~V~tdl~~~l----~----~-~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETA-RCNRVHIDVVRTDLLSGL----R----N-ESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH-HhcCCccceeehhHHhhh----c----c-CCccE
Confidence 456899999999999988875333457899999999986532211 122222234444443222 2 1 68999
Q ss_pred EEEcCCCCc
Q 008350 524 VIGGSPCNN 532 (569)
Q Consensus 524 liGGpPCQ~ 532 (569)
++.-||=-+
T Consensus 114 LvfNPPYVp 122 (209)
T KOG3191|consen 114 LVFNPPYVP 122 (209)
T ss_pred EEECCCcCc
Confidence 999998543
No 235
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=71.55 E-value=2.3 Score=45.30 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=54.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-CC-----CCcccccccccccchhhHHHHHhc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-NQ-----KGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-N~-----~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
.-.+++|=||-||=-+=+.+|||. -++++||.+..++..+..|... |. =.+.++.+|.....- ..++..
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l---~d~~e~ 192 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERL---MDLLEF 192 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHH---HHhccC
Confidence 445888999999999999999995 7999999988776665544322 11 134677888776543 222221
Q ss_pred c-CCeeEEEEcCCC
Q 008350 518 F-GGFDLVIGGSPC 530 (569)
Q Consensus 518 ~-g~~DlliGGpPC 530 (569)
. ..+||+-..+-|
T Consensus 193 ~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAF 206 (389)
T ss_pred CCCCcceeeeeeeE
Confidence 1 338999655543
No 236
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=71.33 E-value=8.1 Score=38.78 Aligned_cols=75 Identities=25% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH-HHhhcC-----------CCCcccccccccccchh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS-WWEQTN-----------QKGTLIDFADVQQLDAN 509 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~-n~~~~N-----------~~~~~~~~~DI~~i~~~ 509 (569)
+.+-+|+.--||-|---+-|.+.|+ .|+++|+++.|++.+.. +....+ .....++++|+-+++.+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 4467899999999998889999996 58999999999987632 211000 11234567788777654
Q ss_pred hHHHHHhccCCeeEEEE
Q 008350 510 RIEQMINAFGGFDLVIG 526 (569)
Q Consensus 510 ~l~~~~~~~g~~DlliG 526 (569)
.+ |.||+|.=
T Consensus 113 ~~-------g~fD~iyD 122 (218)
T PF05724_consen 113 DV-------GKFDLIYD 122 (218)
T ss_dssp CH-------HSEEEEEE
T ss_pred hc-------CCceEEEE
Confidence 33 36777753
No 237
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=70.68 E-value=14 Score=36.46 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=29.2
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
..++++..|+.+||++.+|.+|+.+.+.+. +.-++.|+
T Consensus 147 ~~~e~~~aL~~LGy~~~~a~~ai~~~~~~~-~~~~~~~i 184 (194)
T PRK14605 147 ANSDILATLTALGYSSSEAAKAISSLGDNG-DLPLEERI 184 (194)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhhccC-CCCHHHHH
Confidence 456889999999999999999999998531 33344444
No 238
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=70.33 E-value=21 Score=35.17 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHh-----------CCCCHHHH-HHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 9 GFSEEVVAKAIQEN-----------GEQNTDLI-LEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 9 Gf~~~~v~k~i~e~-----------g~~~~~~i-le~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
+++++-+..||... |..-++.| ||+==+........+..++++..|+.+||++.++.+|+++..
T Consensus 92 ~~~~~el~~aI~~~D~~~L~~vpGIGkKtAeRIilELkdK~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~a~~~~~ 167 (183)
T PRK14601 92 SLDVNSFYKALSLGDESVLKKVPGIGPKSAKRIIAELSDAKTKLENVSDDKSEALAALLTLGFKQEKIIKVLASCQ 167 (183)
T ss_pred CCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 57888888888765 22222222 221111111111223457889999999999999999999984
No 239
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=70.08 E-value=9.1 Score=38.80 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~ 486 (569)
.+.+|+..=||-|-=.+-|.+.|++ |+++|+++.|++.+..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHH
Confidence 4578999999999999999999984 8999999999987643
No 240
>PRK14134 recX recombination regulator RecX; Provisional
Probab=68.95 E-value=41 Score=35.17 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=77.5
Q ss_pred cccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHH
Q 008350 3 DHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSI 79 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~ 79 (569)
..|..-||+++.|..||+ +.|==|.+.-.+..+..... +-+.-.+...|..-|.+.+.+..||.+..+++.-.+
T Consensus 83 ~KL~~k~~~~~~Ie~vI~~L~e~~yldD~ryA~~yv~~~~~---~~G~~~I~~eL~qKGI~~~iIe~al~~~~~e~e~e~ 159 (283)
T PRK14134 83 EKLYLKEYDEDAVNRVIRFLKEYNFIDDDKYCDMYIREKIN---SYGRNKIKYTLLNKGIKENIIIEKINNIDEEKEKKV 159 (283)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---hhhHHHHHHHHHHCCCCHHHHHHHHHhCChhhHHHH
Confidence 456678999999999876 45666677777776664432 234556678999999999999999998765442222
Q ss_pred HHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHH-HHHHHhCCCCHHHHHHHHHhc
Q 008350 80 LETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEK-LVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 80 le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k-~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
+..|+.-.. ...... +. +.-....| ...|+.-||+-+.+..||.++
T Consensus 160 a~~l~~Kk~-~~~~~~-----------------------------~~---~~~k~k~Kl~~~L~rrGFs~~~I~~vl~~~ 206 (283)
T PRK14134 160 AYKLAEKKY-KILILS-----------------------------EK---NKFKIYKKLGPYLISRGYSSNIAEWILNEL 206 (283)
T ss_pred HHHHHHHhh-cccccc-----------------------------cc---cHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 223332111 000000 00 00011233 489999999999999999888
Q ss_pred CC
Q 008350 159 GP 160 (569)
Q Consensus 159 G~ 160 (569)
-.
T Consensus 207 ~~ 208 (283)
T PRK14134 207 IK 208 (283)
T ss_pred Hh
Confidence 53
No 241
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=67.90 E-value=7.4 Score=38.32 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=31.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHH
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDF 170 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~ 170 (569)
.++-+..|+.+||++.||..|+.+..++.++++++-.
T Consensus 145 ~~e~~~aL~~LGy~~~ea~~al~~v~~~~~~eelir~ 181 (186)
T PRK14600 145 NDDALAALISLGYEKTKAFNAIQKIKPNLSTQDIIRK 181 (186)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCHHHHHHH
Confidence 3566789999999999999999999887788877543
No 242
>PRK14137 recX recombination regulator RecX; Provisional
Probab=67.65 E-value=16 Score=36.22 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=46.9
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCH-HHHHHHHHhcccc-cCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 4 HFVGMGFSEEVVAKAIQENGEQNT-DLILEALLKHSAS-SSASSSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 4 ~~~~MGf~~~~v~k~i~e~g~~~~-~~ile~ll~~~~~-~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
.+..-|.+.+.|..||.+...++. +.+.+.+-+--.. ...-....+++.+|+.-||+.+.+..||.++-.
T Consensus 110 eL~qKGI~~~lI~~al~~~d~ede~e~a~~l~~KK~~~~~~~~~~k~K~~~~L~rRGFs~~~I~~al~~~~~ 181 (195)
T PRK14137 110 TLRRRGVEETLIEETLAARDPQEEQQEARNLLERRWSSFARKRDPRASAYAFLARRGFSGAVIWPAIREVAA 181 (195)
T ss_pred HHHHcCCCHHHHHHHHHhcCchhHHHHHHHHHHHhccccCcchhHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455679999999999998744332 3444444332111 111234567888999999999999999988653
No 243
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=67.19 E-value=16 Score=36.32 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.1
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
..++++..|+.+||++.++.+||.++-
T Consensus 151 ~~~ea~~AL~~LGy~~~ea~~al~~i~ 177 (197)
T PRK14603 151 AAEDAVLALLALGFREAQVRSVVAELL 177 (197)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 346889999999999999999999983
No 244
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=66.92 E-value=15 Score=36.17 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=29.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhCCC--chhHHHHH
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENGEE--NTDSILET 82 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G~~--~~d~~le~ 82 (569)
..+++..|..+||++.++.+|+++.+.+ +++.++..
T Consensus 149 ~~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i~~ 186 (192)
T PRK00116 149 LEEAVSALVALGYKPKEASKAVAKILKEAASVEELIRE 186 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 5788999999999999999999999864 34444443
No 245
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=66.81 E-value=16 Score=36.11 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHh-----------CCCCHHHH-HHHHHhccccc-CCCCChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 9 GFSEEVVAKAIQEN-----------GEQNTDLI-LEALLKHSASS-SASSSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 9 Gf~~~~v~k~i~e~-----------g~~~~~~i-le~ll~~~~~~-~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
+++++.+..||... |...++.| ||+==++.... .+.+..++++..|+.+||++.++.+|+++.-.
T Consensus 92 ~~~~~el~~aI~~~D~~~L~~vpGIGkKtAerIilELkdK~~~~~~~~~~~~~e~~~AL~~LGy~~~ea~~av~~~~~ 169 (188)
T PRK14606 92 NEDAETLVTMIASQDVEGLSKLPGISKKTAERIVMELKDEFESAGIKDMRIYHESLEALVSLGYPEKQAREAVKHVYR 169 (188)
T ss_pred CCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhccccCCCcccHHHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 47888888888765 22223322 22111221111 11234578899999999999999999999953
No 246
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=66.78 E-value=8.1 Score=39.41 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=55.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+++-+||=+=.|.||....+.+.. .++.+..||+|+..++..+.++... +.+...++.+|...+..+.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------- 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------- 146 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-------
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-------
Confidence 456778877788888877776654 2367999999999999999887643 2455667778877665332
Q ss_pred cC-CeeEEEEcCC
Q 008350 518 FG-GFDLVIGGSP 529 (569)
Q Consensus 518 ~g-~~DlliGGpP 529 (569)
.. .+|+|+...+
T Consensus 147 ~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 147 QEEKYDVIIVDLT 159 (246)
T ss_dssp SST-EEEEEEESS
T ss_pred cCCcccEEEEeCC
Confidence 13 6999999775
No 247
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=65.27 E-value=8.6 Score=41.72 Aligned_cols=45 Identities=27% Similarity=0.248 Sum_probs=35.0
Q ss_pred CcceeccccChhH--HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc
Q 008350 444 GINVLSLFSGIGG--AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT 491 (569)
Q Consensus 444 ~i~vlDLFSGiGG--~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~ 491 (569)
..+|+|-|||.|- +..+.+- +. ..|+.+|+++.|++..+.|...+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~--~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GV--VKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-Cc--cEEEEccCCHHHHHHHHHHHHhc
Confidence 6889999999984 5555443 32 26999999999999999887543
No 248
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=64.58 E-value=17 Score=37.91 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCCcceeccccChhHHHHHHHHcC-----CceeEEEeeccCHHHHHHHHHHHhhcCCC---Ccccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG-----VRMKNVVSVDISEVNRNIVRSWWEQTNQK---GTLIDFADVQQLD 507 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG-----i~~k~V~avEid~~A~~t~~~n~~~~N~~---~~~~~~~DI~~i~ 507 (569)
..++++||+.+|.|-...++-+.- -+-..|..+||++...++.++........ ...++++|.+++.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 457999999999999999887742 11257899999999887766543211111 1446677877775
No 249
>PLN03075 nicotianamine synthase; Provisional
Probab=64.12 E-value=18 Score=38.31 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCcceeccccChhHHHHHHHHcC-CceeEEEeeccCHHHHHHHHHHHhh-cCCC-CcccccccccccchhhHHHHHhccC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLG-VRMKNVVSVDISEVNRNIVRSWWEQ-TNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aG-i~~k~V~avEid~~A~~t~~~n~~~-~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+-+|+++=||.|+++.-+..++ ++--.+.++|+++.+.+..+.++.. .... ...+..+|+.+.... .+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--------l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--------LK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--------cC
Confidence 45779999999998765443321 1213689999999999988887643 2222 356777888775321 15
Q ss_pred CeeEEEEcCCCCccc
Q 008350 520 GFDLVIGGSPCNNLA 534 (569)
Q Consensus 520 ~~DlliGGpPCQ~fS 534 (569)
++|+|+.- =+-+|.
T Consensus 195 ~FDlVF~~-ALi~~d 208 (296)
T PLN03075 195 EYDVVFLA-ALVGMD 208 (296)
T ss_pred CcCEEEEe-cccccc
Confidence 79999876 343443
No 250
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=63.82 E-value=10 Score=40.92 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+++||=|+.||++.-+.+.|. .|+|||..+-+-.. .+.+.+.++.+|.-.+.+. .+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~l~~~L-------~~~~~V~h~~~d~fr~~p~--------~~~v 271 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGPMAQSL-------MDTGQVEHLRADGFKFRPP--------RKNV 271 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechhcCHhh-------hCCCCEEEEeccCcccCCC--------CCCC
Confidence 4678999999999999999999996 59999976644322 1344555555555444432 1468
Q ss_pred eEEEEcCCCCcc
Q 008350 522 DLVIGGSPCNNL 533 (569)
Q Consensus 522 DlliGGpPCQ~f 533 (569)
|+|+..-=|++.
T Consensus 272 DwvVcDmve~P~ 283 (357)
T PRK11760 272 DWLVCDMVEKPA 283 (357)
T ss_pred CEEEEecccCHH
Confidence 888888877774
No 251
>PF03216 Rhabdo_ncap_2: Rhabdovirus nucleoprotein; InterPro: IPR004902 This is a family of Rhabdovirus nucleocapsid proteins. These proteins undergo phosphorylation.; GO: 0019013 viral nucleocapsid
Probab=63.80 E-value=5 Score=41.89 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=54.9
Q ss_pred cccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHH
Q 008350 5 FVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKA 67 (569)
Q Consensus 5 ~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~A 67 (569)
+.+--|..+++.||+-..|..-+..-|-.||.|--++...+.-+....-|.+|||..+.+.+|
T Consensus 36 ~~g~d~d~~~I~~AlsavGGpqT~~ALsvLlafV~~g~~~~~~et~~kiL~dmgFkv~~~p~a 98 (357)
T PF03216_consen 36 FFGADTDGKMIKRALSAVGGPQTNQALSVLLAFVTQGTNQDDTETKCKILTDMGFKVTQVPRA 98 (357)
T ss_pred EecCccchHHHHHHHHHcCCchHHHHHHHHHHHHHcCCChhhhhhHHHHHHHhCceeEecccC
Confidence 355668899999999999999999999999999888777777788889999999998887665
No 252
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=63.16 E-value=17 Score=41.12 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=57.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
....++|+=||-|++-+.+...--+ ..++++|+....+..........+..+..++++|+..+. ..++ .+.+|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~-~~~~-----~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLIL-NDLP-----NNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HhcC-----ccccc
Confidence 4577999999999999998887544 478999999876543333333345556666666654433 2222 15699
Q ss_pred EEEEcCCCCcc
Q 008350 523 LVIGGSPCNNL 533 (569)
Q Consensus 523 lliGGpPCQ~f 533 (569)
-|..-+|+-=+
T Consensus 420 ~i~i~FPDPWp 430 (506)
T PRK01544 420 GIYILFPDPWI 430 (506)
T ss_pred EEEEECCCCCC
Confidence 99999998543
No 253
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=62.77 E-value=6.4 Score=42.58 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
.-|++|+.++.|||+.|.|.-.|.|+=|
T Consensus 320 p~ddvidKv~~MGf~rDqV~a~v~rl~E 347 (358)
T PF07223_consen 320 PYDDVIDKVASMGFRRDQVRATVRRLTE 347 (358)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4679999999999999999877776644
No 254
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=62.59 E-value=4.4 Score=36.48 Aligned_cols=66 Identities=27% Similarity=0.408 Sum_probs=37.3
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc-c--cCCCCChhHHHHHHHhCCCCHHHHHHHHHH
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA-S--SSASSSKSKLIDHFVGMGFSVDMVAKAIQE 70 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~-~--~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~ 70 (569)
..|..-|.+.+.|..++++ .+..+.+++.+.+--. . ...-....+++..|+.-||+.+.|..||++
T Consensus 50 ~~L~~kGi~~~~i~~~l~~--~~~~e~a~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi~~ 118 (121)
T PF02631_consen 50 QKLKQKGIDREIIEEALEE--YDEEEEALELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVISE 118 (121)
T ss_dssp HHHHHTT--HHHHHHHHTC--S-HHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHCHH
T ss_pred HHHHHHCCChHHHHHHHHH--hhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhh
Confidence 3455678888888888881 1222233333322111 1 112335566788999999999999999998
No 255
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=62.57 E-value=9.1 Score=38.92 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=47.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA 508 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~ 508 (569)
.-+|.||=||.|-.+.-|++- +....+.++|.++...+..+.. .++..+..+|++.+..
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p 89 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKP 89 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCC
Confidence 467999999999998888775 3335799999999988877643 5677888999998875
No 256
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=61.32 E-value=10 Score=38.86 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=37.2
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
.|+++...|.. +.|..+|||+--.+-.+......+.+ ...+..|+++-.++.+. +.+|+++..||=+.
T Consensus 57 tSlA~al~~~~-~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~------~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 57 TSLALALTGLP-KRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELR------GKFDVFFTDPPYTP 124 (243)
T ss_dssp HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTS------S-BSEEEE---SSH
T ss_pred HHHHHHhhCCC-CeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHh------cCCCEEEeCCCCCH
Confidence 44555555554 67899999998877666655555554 66778888877766544 78999999999875
No 257
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=61.28 E-value=16 Score=37.49 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=44.2
Q ss_pred ccChhH-HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHH----HHhccCCeeEEE
Q 008350 451 FSGIGG-AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQ----MINAFGGFDLVI 525 (569)
Q Consensus 451 FSGiGG-~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~----~~~~~g~~Dlli 525 (569)
++|||- ++..|...|+. +.+++.+..+.++...-...+....+.++..|++. ...+++ .+..+|.+|++|
T Consensus 14 agGIGl~~sk~Ll~kgik---~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~--~~~~~~~f~ki~~~fg~iDIlI 88 (261)
T KOG4169|consen 14 AGGIGLATSKALLEKGIK---VLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTN--RGDLEAAFDKILATFGTIDILI 88 (261)
T ss_pred CchhhHHHHHHHHHcCch---heeehhhhhCHHHHHHHhccCCCceEEEEEecccc--HHHHHHHHHHHHHHhCceEEEE
Confidence 555554 56677778974 55666666555544433223333445677888887 334443 344579999998
Q ss_pred EcC
Q 008350 526 GGS 528 (569)
Q Consensus 526 GGp 528 (569)
-|-
T Consensus 89 NgA 91 (261)
T KOG4169|consen 89 NGA 91 (261)
T ss_pred ccc
Confidence 764
No 258
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=60.90 E-value=12 Score=37.04 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcC---CCCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCG---PNTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G---~~a~~~~l~ 168 (569)
++-+..|+++||++.||..||.++- .+.++++++
T Consensus 153 ~ea~~AL~~LGy~~~ea~~al~~i~~~~~~~~~e~li 189 (197)
T PRK14603 153 EDAVLALLALGFREAQVRSVVAELLAQNPEASAQTLI 189 (197)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 4668899999999999999999983 344566554
No 259
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=60.41 E-value=12 Score=39.84 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=37.5
Q ss_pred CCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhh
Q 008350 43 ASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSAL 89 (569)
Q Consensus 43 ~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~ 89 (569)
.|++....+..++.|||.+++|.+|+.--= .+.|..||+|+.-+-.
T Consensus 131 ~G~~~e~~V~~Im~MGy~re~V~~AlRAaf-NNPeRAVEYLl~GIP~ 176 (340)
T KOG0011|consen 131 VGSEYEQTVQQIMEMGYDREEVERALRAAF-NNPERAVEYLLNGIPE 176 (340)
T ss_pred ccchhHHHHHHHHHhCccHHHHHHHHHHhh-CChhhhHHHHhcCCcc
Confidence 366777778899999999999999997643 4679999999986544
No 260
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=59.56 E-value=2.4 Score=43.42 Aligned_cols=50 Identities=32% Similarity=0.519 Sum_probs=42.0
Q ss_pred CccccCCcccceeeccCCCCccccCCcccceeeccccccccccchhhhhh
Q 008350 386 NKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLS 435 (569)
Q Consensus 386 ~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls 435 (569)
-+++..+|.|..+++|||+++-+-.....+.+++.+||+..|..+.+.++
T Consensus 285 l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIk 334 (338)
T KOG0919|consen 285 LRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIK 334 (338)
T ss_pred HHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHH
Confidence 35677889999999999999988888888999999999998877665543
No 261
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=58.94 E-value=5.9 Score=37.16 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=68.4
Q ss_pred cccccccCCCCCCCCCCCCcccHHhhchhhhccCCCCCcc-------CCcccceeec--cchhHHHHHHhhhhccCCCCC
Q 008350 292 RGYVHNLPIKNRHHLVPLPPQNIYEALPLSRKWWPSWDTR-------SHLNCLQTCI--ASAKLTERIRKALEECDGEPE 362 (569)
Q Consensus 292 rgyihnlp~~~r~~~~p~~p~tI~ealp~~r~~~p~~d~r-------~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~ 362 (569)
.|+|-.|.+..|.+.+|.+ ..| -+++.+.++|+..++ .+++.|+++. .........++|......+
T Consensus 29 VgrI~eI~~~k~~~~k~~~-~~i--kvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~d-- 103 (137)
T cd04711 29 IGRIKEIFCAKRSNGKPNE-SDI--KLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGED-- 103 (137)
T ss_pred EEEEEEEecCCCCCCCCCc-cce--EEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccc--
Confidence 4778888787787767664 222 378889999995444 5677788885 6778889999999999988
Q ss_pred CCccchhHHHhhhcccceeeeccCccccCCc-ccceeeccCC
Q 008350 363 PPHHVQKFVMDECRKWNLVWVGRNKLAPLEP-DEVEMLLGFP 403 (569)
Q Consensus 363 ~~~~vq~~il~~ck~~nlvwvg~~~~~~l~~-~e~E~l~GfP 403 (569)
++.+++.|.. +|++.+..++. +....-|..|
T Consensus 104 i~~s~~~y~~----------~gpd~Fyf~~~Y~a~t~~F~d~ 135 (137)
T cd04711 104 LPESVQEYSG----------GGPDRFYFLEAYNAKTKSFEDP 135 (137)
T ss_pred cchhHHHHhc----------CCCcceEEhhhhccccCcccCC
Confidence 8888888864 56666655554 3444444433
No 262
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=58.30 E-value=26 Score=36.07 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCCcceeccccChhH----HHHHHHHcCC-----ceeEEEeeccCHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGG----AEVALHRLGV-----RMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG----~slGl~~aGi-----~~k~V~avEid~~A~~t~~~ 486 (569)
..+++|+|+=||.|- +.+-+.+.+. . -.|+|+|+++.+.+..+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~-~~I~g~Dis~~~L~~Ar~ 150 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPD-VKILATDIDLKALEKARA 150 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCC-eEEEEEECCHHHHHHHHc
Confidence 346899999999995 4444444321 2 269999999999887765
No 263
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.46 E-value=65 Score=33.02 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=48.0
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhc--
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINA-- 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~-- 517 (569)
++....+-.|+|.+.+..|+.-- +. .|+++|+++.+.+.....+....-. ...++.++.. +.|.+++++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dG---rv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~----esLd~l~~~~~ 146 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDG---RVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL----ESLDELLADGE 146 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCc---eEEEEecChHHHHHhHHHHHhccccceeeeeecchh----hhHHHHHhcCC
Confidence 33444566699999999888753 22 6999999999987765554433211 1123333333 445555543
Q ss_pred cCCeeEEEEc
Q 008350 518 FGGFDLVIGG 527 (569)
Q Consensus 518 ~g~~DlliGG 527 (569)
.+.+|+++..
T Consensus 147 ~~tfDfaFvD 156 (237)
T KOG1663|consen 147 SGTFDFAFVD 156 (237)
T ss_pred CCceeEEEEc
Confidence 5778877543
No 264
>PRK14137 recX recombination regulator RecX; Provisional
Probab=56.66 E-value=1.6e+02 Score=29.14 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=73.9
Q ss_pred cccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc-hhH
Q 008350 3 DHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN-TDS 78 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~-~d~ 78 (569)
..|..-||+++.|..||+ ++|==|.....+.-.. ..+-..-.+...|..-|.+.+.+..||.+...++ .+.
T Consensus 62 ~KL~~kg~~~e~Ie~vI~rL~e~gyLDD~rfAe~~~~-----~k~~Gp~rI~~eL~qKGI~~~lI~~al~~~d~ede~e~ 136 (195)
T PRK14137 62 AKLERRSEDEALVTEVLERVQELGYQDDAQVARAENS-----RRGVGALRVRQTLRRRGVEETLIEETLAARDPQEEQQE 136 (195)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----hcCchHHHHHHHHHHcCCCHHHHHHHHHhcCchhHHHH
Confidence 345667999999888875 4566666666665311 1233444566899999999999999999885433 233
Q ss_pred HHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 79 ILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 79 ~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
+...+-. . ...... + ...+..-...|..=||+-+.+..||..+
T Consensus 137 a~~l~~K-K----~~~~~~---------------------------~-----~~~k~K~~~~L~rRGFs~~~I~~al~~~ 179 (195)
T PRK14137 137 ARNLLER-R----WSSFAR---------------------------K-----RDPRASAYAFLARRGFSGAVIWPAIREV 179 (195)
T ss_pred HHHHHHH-h----ccccCc---------------------------c-----hhHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3333321 1 110000 0 0113344689999999999999999887
Q ss_pred CCC
Q 008350 159 GPN 161 (569)
Q Consensus 159 G~~ 161 (569)
-..
T Consensus 180 ~~~ 182 (195)
T PRK14137 180 AAL 182 (195)
T ss_pred HHh
Confidence 543
No 265
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=56.45 E-value=14 Score=36.44 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC-CCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGP-NTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~-~a~~~~l~ 168 (569)
++-+..|+++||++.||..||.+... +.++++|+
T Consensus 144 ~e~~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 178 (188)
T PRK14606 144 HESLEALVSLGYPEKQAREAVKHVYREGMKTSELI 178 (188)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCHHHHH
Confidence 46678999999999999999999954 55666654
No 266
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=56.34 E-value=16 Score=36.34 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcC---CCCchhHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCG---PNTSIAELTDF 170 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G---~~a~~~~l~D~ 170 (569)
++-+..|+++||++.||..|+.++- ++.++++++-.
T Consensus 156 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ 194 (203)
T PRK14602 156 RDALAGLANLGYGEEEARPVLKEVLEEEPDLDVGGALRA 194 (203)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 4667899999999999999999993 34566665543
No 267
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=54.20 E-value=39 Score=31.06 Aligned_cols=46 Identities=24% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCCcceeccccChhHHHHHHHH----cCCceeEEEeeccCHHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHR----LGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~----aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
....+|+|+-||-|=++..|.. .... -.|.++|.++..........
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPN-LRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCC-CeEEEEECCcHHHHHHHHHH
Confidence 4578899999999999998887 1122 36899999988776655543
No 268
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=51.85 E-value=41 Score=34.92 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=40.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-Cccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQ 504 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~ 504 (569)
....+++|+=||.|.+...+.+..-.. .+.++|. +..++..+.+....+.. ...++.+|+.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCC-EEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 445789999999999999998875332 4778897 56666666665443322 2334555654
No 269
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.74 E-value=30 Score=34.68 Aligned_cols=76 Identities=21% Similarity=0.362 Sum_probs=52.1
Q ss_pred cCCCCcceeccccChhHHHHHHH-HcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHHHHhc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALH-RLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~-~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~~~~~ 517 (569)
.+..+.+|+||-|-.||.+.-+. ++|-. -.|+++|+.+.. -++++.++.+|++.-+.. .|...++.
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~-~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAG-GKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCC-CcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHHcCC
Confidence 34568999999999999998544 45532 138999998863 367788999999877542 33332221
Q ss_pred cCCeeEEEEcC
Q 008350 518 FGGFDLVIGGS 528 (569)
Q Consensus 518 ~g~~DlliGGp 528 (569)
..+|+|+-..
T Consensus 110 -~~~DvV~sD~ 119 (205)
T COG0293 110 -APVDVVLSDM 119 (205)
T ss_pred -CCcceEEecC
Confidence 2369998543
No 270
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=50.73 E-value=62 Score=34.71 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhccc--------------------ccCCCC--------ChhHHHHHHHhCCCCHHH
Q 008350 12 EEVVAKAIQENGEQNTDLILEALLKHSA--------------------SSSASS--------SKSKLIDHFVGMGFSVDM 63 (569)
Q Consensus 12 ~~~v~k~i~e~g~~~~~~ile~ll~~~~--------------------~~~~~s--------s~~~~~~~~~~MGF~~~~ 63 (569)
+++....+|+.|..|-- |++.+-.-++ ...+++ .-...|.-|-.|||++.+
T Consensus 236 P~ll~~~Lqqlg~~nP~-L~q~Iq~nqe~Fl~mlnep~~~~~~~~~~~~~~~~~~~~I~vtpee~eAIeRL~alGF~ral 314 (340)
T KOG0011|consen 236 PELLHPLLQQLGKQNPQ-LLQLIQENQEAFLQLLNEPVEGGDGGGTGAPAAEGPGHQIQVTPEEKEAIERLEALGFPRAL 314 (340)
T ss_pred HHHHHHHHHHHhhhCHH-HHHHHHHHHHHHHHHhhcccccccccccccccccCCcceEecCHHHHHHHHHHHHhCCcHHH
Confidence 57788899999987754 3443332222 111232 556678999999999999
Q ss_pred HHHHHHHhCCCchhHHHHHHHHh
Q 008350 64 VAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 64 v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
|..|-=-|-. |.+..-++|+..
T Consensus 315 ViqayfACdK-NEelAAN~Ll~~ 336 (340)
T KOG0011|consen 315 VIQAYFACDK-NEELAANYLLSH 336 (340)
T ss_pred HHHHHHhcCc-cHHHHHHHHHhh
Confidence 9999999976 558888898863
No 271
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=50.58 E-value=46 Score=32.81 Aligned_cols=29 Identities=14% Similarity=0.464 Sum_probs=25.1
Q ss_pred CChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 45 SSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 45 ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
+..++++..|+.+||++.+|.+|+.+.-.
T Consensus 145 ~~~~e~~~aL~~LGy~~~e~~~ai~~~~~ 173 (191)
T TIGR00084 145 AARDELFEALVSLGYKPQEIQQALKKIKN 173 (191)
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHhh
Confidence 34578899999999999999999999843
No 272
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=50.10 E-value=23 Score=34.88 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPNTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~ 168 (569)
++-+..|+++||++.||..|+.+.. +.++++++
T Consensus 143 ~ea~~AL~~LGy~~~ea~~a~~~~~-~~~~eeli 175 (183)
T PRK14601 143 SEALAALLTLGFKQEKIIKVLASCQ-STGTSELI 175 (183)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhcc-cCCHHHHH
Confidence 4668999999999999999999983 55666654
No 273
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=49.84 E-value=35 Score=34.01 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=51.7
Q ss_pred CcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhc--cC
Q 008350 444 GINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINA--FG 519 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~--~g 519 (569)
.-+||++=+|+|=-++.+.++ .-. -.++++|+++...+..+.|+...+.. .+.++.+|..++... +... .+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~-g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~----l~~~~~~~ 120 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPED-GKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPE----LANDGEEG 120 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTT-SEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHH----HHHTTTTT
T ss_pred CceEEEeccccccHHHHHHHhhccc-ceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHH----HHhccCCC
Confidence 456888877777666666654 111 26999999999999999988766543 234666777665432 2222 35
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.||+|+..-
T Consensus 121 ~fD~VFiDa 129 (205)
T PF01596_consen 121 QFDFVFIDA 129 (205)
T ss_dssp SEEEEEEES
T ss_pred ceeEEEEcc
Confidence 799997664
No 274
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=49.83 E-value=27 Score=36.66 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC----CCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN----QKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N----~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
|++-+||=+=-|.||...-+.+..- ++.++.||||+.-++..+.++.... .|-+.++.+|..++..+.
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------- 146 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------- 146 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-------
Confidence 3334788888888888777777653 4789999999999999998876543 355566677766665322
Q ss_pred cCCeeEEEEcC
Q 008350 518 FGGFDLVIGGS 528 (569)
Q Consensus 518 ~g~~DlliGGp 528 (569)
...+|+||...
T Consensus 147 ~~~fDvIi~D~ 157 (282)
T COG0421 147 EEKFDVIIVDS 157 (282)
T ss_pred CCcCCEEEEcC
Confidence 13699999874
No 275
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=49.55 E-value=1.8 Score=36.77 Aligned_cols=39 Identities=26% Similarity=0.097 Sum_probs=27.4
Q ss_pred eccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 448 LSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 448 lDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
||+=||.|.+...+.+.. +...+.++|+++.+...++..
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~ 39 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARER 39 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCC
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHH
Confidence 567799999988888773 235788999999988544433
No 276
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=49.41 E-value=5.6 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHhCCCCHHHHHHHHHhcCC
Q 008350 138 LVSLASMGYSVQEASIAMERCGP 160 (569)
Q Consensus 138 ~~~L~~Mgf~e~e~~~Ai~r~G~ 160 (569)
+.+|++-|.+++||..|-.|.=+
T Consensus 714 ~nTLVNqGi~eerAaria~RAfP 736 (787)
T PF03115_consen 714 FNTLVNQGIPEERAARIAKRAFP 736 (787)
T ss_dssp -----------------------
T ss_pred HHHHHHcCCCHHHHHhhhhccCC
Confidence 58899999999999876666544
No 277
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=49.02 E-value=22 Score=36.53 Aligned_cols=35 Identities=34% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISE 478 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~ 478 (569)
.++-+++|+=|-+|||+.-+-+.|. +.|+|+|.--
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~ 112 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGY 112 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccC
Confidence 4567899999999999999999986 5899999865
No 278
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=48.88 E-value=24 Score=34.92 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC--CCchhHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGP--NTSIAELTDF 170 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~--~a~~~~l~D~ 170 (569)
++-+..|..+||+..||..|+.+++. +.++++++-.
T Consensus 149 ~e~~~aL~~LGy~~~~a~~ai~~~~~~~~~~~~~~ir~ 186 (194)
T PRK14605 149 SDILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKL 186 (194)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 45678999999999999999999985 5567766543
No 279
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=47.16 E-value=59 Score=27.83 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCC
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGF 59 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF 59 (569)
.+||++.-+...-.+|..+-.+.+.+.|.....-.........|+..|..||+
T Consensus 22 ~LGlse~~Id~i~~~~~~~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~~l 74 (86)
T cd08306 22 KLGLSETKIESIEEAHPRNLREQVRQSLREWKKIKKKEAKVADLIKALRDCQL 74 (86)
T ss_pred HcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHcCc
Confidence 47999999999999997644588999998766543334445566666666666
No 280
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=47.00 E-value=39 Score=33.31 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=25.2
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
..++++..|+.+||++.++.+|+.+..+
T Consensus 144 ~~~e~~~aL~~LGy~~~ea~~al~~v~~ 171 (186)
T PRK14600 144 INDDALAALISLGYEKTKAFNAIQKIKP 171 (186)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHhhc
Confidence 4578899999999999999999999964
No 281
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=45.91 E-value=81 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
.++++..|+.+||++.++.+||.++-
T Consensus 149 ~~e~~~aL~~LGy~~~ea~~ai~~i~ 174 (195)
T PRK14604 149 DRELSEILISLGYSAAEAAAAIAALP 174 (195)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 46889999999999999999999983
No 282
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=45.62 E-value=24 Score=35.23 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=23.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
.++++..|+.+||++.++.+|+.+.-
T Consensus 155 ~~ea~~AL~~LGy~~~ea~~av~~~~ 180 (203)
T PRK14602 155 FRDALAGLANLGYGEEEARPVLKEVL 180 (203)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 46778999999999999999999994
No 283
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=45.46 E-value=58 Score=32.48 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.9
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
..++++..|+.+||++.++.+|+.+.-
T Consensus 143 ~~~ea~~AL~~LGy~~~ea~~al~~v~ 169 (196)
T PRK13901 143 KFKELEQSIVNMGFDRKLVNSAIKEIM 169 (196)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 356889999999999999999999874
No 284
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=44.78 E-value=15 Score=39.71 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=53.1
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHH-------HHHHHHhhcCCCC--cccccccccccchhh
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRN-------IVRSWWEQTNQKG--TLIDFADVQQLDANR 510 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~-------t~~~n~~~~N~~~--~~~~~~DI~~i~~~~ 510 (569)
+...+-.|.|=|.|.||+=+....-|- .|.+.|||-..+. ..++|+.+..-.. ..++.+|.+.-....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa---~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA---YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc---eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh
Confidence 444566699999999999887777774 6888999865443 2355665543110 113455555443221
Q ss_pred HHHHHhccCCeeEEEEcCCCCc
Q 008350 511 IEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
.-.+|.|++.||---
T Consensus 282 -------n~~fDaIvcDPPYGV 296 (421)
T KOG2671|consen 282 -------NLKFDAIVCDPPYGV 296 (421)
T ss_pred -------cceeeEEEeCCCcch
Confidence 136999999999653
No 285
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=44.33 E-value=24 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=26.4
Q ss_pred HHHHHhCCCCHHHHHHHHHhcCC---CCchhHHHH
Q 008350 138 LVSLASMGYSVQEASIAMERCGP---NTSIAELTD 169 (569)
Q Consensus 138 ~~~L~~Mgf~e~e~~~Ai~r~G~---~a~~~~l~D 169 (569)
+..|+.|||++.|+..|+...-. +++++++.=
T Consensus 160 v~AL~~LGy~~~e~~~av~~v~~~~~~~~~~~~Ik 194 (201)
T COG0632 160 VEALVALGYKEKEIKKAVKKVLKENPDADVEELIK 194 (201)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 78999999999999999988875 566666543
No 286
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=43.55 E-value=42 Score=33.10 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC--CCchhHHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGP--NTSIAELTDFI 171 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~--~a~~~~l~D~i 171 (569)
++=+..|+.+||+..||..||.+.-. +.++++++...
T Consensus 148 ~e~~~aL~~LGy~~~e~~~ai~~~~~~~~~~~~~li~~a 186 (191)
T TIGR00084 148 DELFEALVSLGYKPQEIQQALKKIKNKPDFAIEQDIEEA 186 (191)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 45678999999999999999999853 56777776544
No 287
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=43.00 E-value=31 Score=34.22 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC--CCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGP--NTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~--~a~~~~l~ 168 (569)
++-+..|+++||+..||..||.++-. +.++++++
T Consensus 150 ~e~~~aL~~LGy~~~ea~~ai~~i~~~~~~~~~~~i 185 (195)
T PRK14604 150 RELSEILISLGYSAAEAAAAIAALPSDAPPDLEERL 185 (195)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCHHHHH
Confidence 46678999999999999999999843 34555554
No 288
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.52 E-value=26 Score=34.62 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
+.-..++++.|..|||++.++..|+...+-
T Consensus 159 ~~~~~~~v~~l~~mGf~~~~~i~~L~~~~w 188 (200)
T KOG0418|consen 159 DPWDKKKVDSLIEMGFSELEAILVLSGSDW 188 (200)
T ss_pred CchhHHHHHHHHHhcccHHHHHHHhhcccc
Confidence 445567899999999999999888877765
No 289
>PLN03196 MOC1-like protein; Provisional
Probab=40.36 E-value=51 Score=37.19 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhC
Q 008350 50 LIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 50 ~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
.++.|..|||+.++|.+++.++=
T Consensus 343 kvefL~~~Gls~edI~~mv~k~P 365 (487)
T PLN03196 343 HVEFLRGRGFSAQDVAKMVVRCP 365 (487)
T ss_pred HHHHHHHcCCCHHHHHHHHHhCC
Confidence 45677778888888887777763
No 290
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=40.20 E-value=38 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 27 TDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 27 ~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
.++||+.|-. +.....|-+-+.+..+| |+++++|.+||+++=
T Consensus 49 ~~~Vl~~i~~-~~~~~~Gv~v~~I~~~l---~~~~~~v~~al~~L~ 90 (102)
T PF08784_consen 49 QDKVLNFIKQ-QPNSEEGVHVDEIAQQL---GMSENEVRKALDFLS 90 (102)
T ss_dssp HHHHHHHHHC-----TTTEEHHHHHHHS---TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCCCcccHHHHHHHh---CcCHHHHHHHHHHHH
Confidence 3467777766 55566788888888887 999999999998874
No 291
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=39.88 E-value=74 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=29.4
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHh----C-------CCchhHHHHHHHHhh
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQEN----G-------EENTDSILETLLTYS 87 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~----G-------~~~~d~~le~Ll~~~ 87 (569)
-++.++++..|||++..|.-.|+++ | +++-..+++.|++.+
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~ 62 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQ 62 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHh
Confidence 3556789999999999999999887 3 223345666666544
No 292
>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []. The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.
Probab=39.78 E-value=29 Score=36.47 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=38.6
Q ss_pred ccccccCCCCHHHHHHHHHHhCC---CCHHHHHHHHHhccc---ccCC-------------CCChhHHHHHHHhCCCCHH
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGE---QNTDLILEALLKHSA---SSSA-------------SSSKSKLIDHFVGMGFSVD 62 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~---~~~~~ile~ll~~~~---~~~~-------------~ss~~~~~~~~~~MGF~~~ 62 (569)
++.|-++||+.+.|.+++..+-. -+.+.+++....... ...+ ...-...++.|..+||+++
T Consensus 179 v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ 258 (345)
T PF02536_consen 179 VEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILSLSEEKLKPKIEFLQSLGFSEE 258 (345)
T ss_dssp HHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------THHHHHHHHHHHHHHTTT--HH
T ss_pred HHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccccchHhHHHHHHHHHHhcCcHH
Confidence 34567899999999999998632 122222222211111 0000 0123344678899999999
Q ss_pred HHHHHHHHhCC
Q 008350 63 MVAKAIQENGE 73 (569)
Q Consensus 63 ~v~~Ai~~~G~ 73 (569)
+|.+++.++=.
T Consensus 259 ei~~mv~~~P~ 269 (345)
T PF02536_consen 259 EIAKMVRRFPQ 269 (345)
T ss_dssp HHHHHHHHSGG
T ss_pred HHHHHHHhCcc
Confidence 99999999853
No 293
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=38.93 E-value=50 Score=26.93 Aligned_cols=50 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhC
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGM 57 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~M 57 (569)
.+||+...+...-++++. ..+...+.|........+..+-..|+..|..|
T Consensus 21 ~Lg~~~~~i~~i~~~~~~-~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~ 70 (83)
T PF00531_consen 21 KLGLSESEIENIEEENPD-LREQTYEMLQRWRQREGPNATVDQLIQALRDI 70 (83)
T ss_dssp HTTS-HHHHHHHHHHSTS-HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHT
T ss_pred HhCcCHHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Confidence 479999999988888876 77777777776554433333333444333333
No 294
>PRK03980 flap endonuclease-1; Provisional
Probab=38.64 E-value=99 Score=32.58 Aligned_cols=62 Identities=24% Similarity=0.415 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHH--------------HHHhcccccC-----CCCChhHHHHHHHh-CCCCHHHHHHHH
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILE--------------ALLKHSASSS-----ASSSKSKLIDHFVG-MGFSVDMVAKAI 68 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile--------------~ll~~~~~~~-----~~ss~~~~~~~~~~-MGF~~~~v~~Ai 68 (569)
|.-+..+.|.|+++|. .+.|++ +.+.-..... ..+..+.+++.|+. +||++++|.++|
T Consensus 196 GIG~ktA~kLi~~~~s--le~i~~~~~~~~~~~~~~r~~f~~p~v~~~~~~~~~~pd~~~l~~fl~~e~~f~~~rv~~~~ 273 (292)
T PRK03980 196 GIGPKTALKLIKKHGD--LEKVLEERGFEIENYDEIREFFLNPPVTDDYELKWKEPDKEGIIEFLVEEHDFSEERVKKAL 273 (292)
T ss_pred CccHHHHHHHHHHCCC--HHHHHHhccCCCCCHHHHHHHhcCCCCCCCCCccCCCCCHHHHHHHHhccCCCCHHHHHHHH
Confidence 5667888999999974 555554 2222111111 24567778888875 999999999999
Q ss_pred HHhC
Q 008350 69 QENG 72 (569)
Q Consensus 69 ~~~G 72 (569)
+++-
T Consensus 274 ~~l~ 277 (292)
T PRK03980 274 ERLE 277 (292)
T ss_pred HHHH
Confidence 9984
No 295
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=36.55 E-value=64 Score=31.51 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccc-------------------cCCCCChhHHHHHHHhCCCCHHHHHH
Q 008350 6 VGMGFSEEVVAKAIQENGEQNTDLILEALLKHSAS-------------------SSASSSKSKLIDHFVGMGFSVDMVAK 66 (569)
Q Consensus 6 ~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~-------------------~~~~ss~~~~~~~~~~MGF~~~~v~~ 66 (569)
+.+|+.+-.+...+++.| -+.+.|-++|-++... ......+.+....|+.-||+.+.+..
T Consensus 81 ~~~g~G~~rl~qeL~qkG-i~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~ 159 (174)
T COG2137 81 SRKGKGPARLKQELKQKG-IDDEIIEEALELIDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKE 159 (174)
T ss_pred HhcccChHHHHHHHHHcC-CCHHHHHHHHhccchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHH
Confidence 345677777777777777 4555555555533331 22344567788899999999999999
Q ss_pred HHHHhCCC
Q 008350 67 AIQENGEE 74 (569)
Q Consensus 67 Ai~~~G~~ 74 (569)
||...=.+
T Consensus 160 ~l~~~~~~ 167 (174)
T COG2137 160 ALNEAEEE 167 (174)
T ss_pred HHHHhhhc
Confidence 99887543
No 296
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=36.43 E-value=25 Score=36.72 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=33.3
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
-.+.|+|+|.|-.+.-|..+|- -|.++|+.-..--.++.|.
T Consensus 29 k~f~DiFaGtGVV~~~fkk~~n---~iiaNDle~ysylln~~yi 69 (330)
T COG3392 29 KIFCDIFAGTGVVGRFFKKAGN---KIIANDLEYYSYLLNQNYI 69 (330)
T ss_pred CeeeeeccCccHHHHHHHHhcc---hhhhchHHHHHHHHHHHHh
Confidence 3699999999999999999994 5899999877655555553
No 297
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=35.83 E-value=34 Score=35.32 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=50.3
Q ss_pred ceeccccChhHHHHHHHHcCCc--eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 446 NVLSLFSGIGGAEVALHRLGVR--MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~--~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+++++=||+|-....+-+..-+ + .|++||.++.|+..++.+-. .+ ......++.+++.+.+..-+ ..+.+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~~-~~---e~~~~afv~Dlt~~~~~~~~-~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSSG-YD---ESRVEAFVWDLTSPSLKEPP-EEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe-EEEEcCCChHHHHHHHhccc-cc---hhhhcccceeccchhccCCC-CcCccce
Confidence 7899999999999988875322 3 58999999999999987521 11 12345666677655432111 1256676
Q ss_pred EEEc
Q 008350 524 VIGG 527 (569)
Q Consensus 524 liGG 527 (569)
++.=
T Consensus 148 it~I 151 (264)
T KOG2361|consen 148 ITLI 151 (264)
T ss_pred EEEE
Confidence 6543
No 298
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=35.79 E-value=1.5e+02 Score=29.46 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=39.5
Q ss_pred eeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccc
Q 008350 447 VLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFAD 502 (569)
Q Consensus 447 vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~D 502 (569)
|.|+-|-=|=+.+.|-+.|. ...++|+|+++...+.++.+....+..+ ..+.++|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgd 56 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGD 56 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-S
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECC
Confidence 46777888889999999997 4789999999999888887766554322 2344555
No 299
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=38 Score=35.34 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=29.9
Q ss_pred HHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 52 DHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 52 ~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
++|+.||||...+.+|+--.|..+++.+++.|.
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl~ 37 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWLE 37 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHHH
Confidence 789999999999999999888878899999884
No 300
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=35.31 E-value=2.2e+02 Score=24.91 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=42.3
Q ss_pred ccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc-hhHHHHHHH
Q 008350 6 VGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN-TDSILETLL 84 (569)
Q Consensus 6 ~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~-~d~~le~Ll 84 (569)
-.+||+..-+..+..+|-.. .+.+.+.|.+-..-...+-+ ......|+..+|... .|.|-+.|+
T Consensus 27 R~LGLse~~I~~i~~~~~~~-~eq~~qmL~~W~~~~G~~At--------------~~~L~~aL~~~~~~~~Ae~I~~~l~ 91 (96)
T cd08315 27 RQLGLSENEIDVAKANERVT-REQLYQMLLTWVNKTGRKAS--------------VNTLLDALEAIGLRLAKESIQDELI 91 (96)
T ss_pred HHcCCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHhhCCCcH--------------HHHHHHHHHHcccccHHHHHHHHHH
Confidence 35899999999999999765 99999999886543322222 344445555556555 455555554
No 301
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=35.22 E-value=64 Score=32.85 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=36.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
..+..|+|-|+|.|...++..++|- ..+++|+++..+.....-+
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~ 264 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRL 264 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHH
Confidence 4567899999999999999999995 5688999999887665443
No 302
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.52 E-value=27 Score=36.41 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=30.1
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHH
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEAL 34 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~l 34 (569)
+++++||||...+.+|+.-+|..+.+.+++-|
T Consensus 5 ~~l~~mgfps~k~e~al~~~~n~~~e~al~wl 36 (290)
T KOG2689|consen 5 QSLEEMGFPSGKAEKALAVYGNRGIEQALDWL 36 (290)
T ss_pred HHHHHhcCchhhhhhHhhhhccccHHHHHHHH
Confidence 57899999999999999999999999999988
No 303
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=33.16 E-value=50 Score=25.53 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCChhHHHHHHHhC---CCCHHHHHHHHHH
Q 008350 43 ASSSKSKLIDHFVGM---GFSVDMVAKAIQE 70 (569)
Q Consensus 43 ~~ss~~~~~~~~~~M---GF~~~~v~~Ai~~ 70 (569)
..-|+..+.++|+.= ||+++++.-||+-
T Consensus 17 ~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv~~ 47 (48)
T PF07553_consen 17 MHMSKQGLYDQLTSEYGEGFTEEEAQYAVDH 47 (48)
T ss_pred ccCCHHHHHHHHHhhcccCCCHHHHHHHHHc
Confidence 356888999999875 9999999999974
No 304
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=32.92 E-value=62 Score=33.04 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=33.5
Q ss_pred CCCcceeccccChhHHH--HHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAE--VALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~s--lGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
..++++.|=+||.|.+= +||-... .++.|++.||++.+....+.|.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~-~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRR-RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGG-GEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhH-HHHhHhcccCCHHHHHHHHHhh
Confidence 36799999999999864 3554432 4579999999999999888876
No 305
>COG1715 Mrr Restriction endonuclease [Defense mechanisms]
Probab=31.39 E-value=23 Score=37.33 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhH-HHHHHHhCCCC--HHHHHHHHHHhCCCchhHHH
Q 008350 11 SEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSK-LIDHFVGMGFS--VDMVAKAIQENGEENTDSIL 80 (569)
Q Consensus 11 ~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~-~~~~~~~MGF~--~~~v~~Ai~~~G~~~~d~~l 80 (569)
|++.+..|++|+=++=+..||+.|++++.. -..+ +++.|..|||- ...+.+++-.-|+..+|=++
T Consensus 139 pee~~~~a~~el~~~La~ElL~~~~~~sp~-----~Fe~lvvdvl~rmGYgg~~~~~~~~vg~sGDgGIdGiI 206 (308)
T COG1715 139 PEERIDQAVAELRAELATELLENLRKLSPA-----FFEELVVDVLERMGYGGSRRDAGQRVGYTGDGGIDGII 206 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHhcCCccccchhhhccccCCCCcccee
Confidence 789999999999776677888888885442 2223 35678889998 56677777777776655433
No 306
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.25 E-value=85 Score=22.94 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
.++++.|.+++++++. |.+..++.||.
T Consensus 14 ~~~~~~I~~~L~~~~~-~ve~ai~~LL~ 40 (42)
T PF02845_consen 14 DLDREVIEAVLQANNG-DVEAAIDALLE 40 (42)
T ss_dssp SS-HHHHHHHHHHTTT-THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHc
Confidence 4678999999999966 99999999986
No 307
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=31.18 E-value=1.9e+02 Score=30.81 Aligned_cols=80 Identities=8% Similarity=0.079 Sum_probs=50.3
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-.++|.=.|.||=+.++.+.--+ -.|+++|.|+.|.+..+...... .....+++++-.++. +.+..+ ....+|.
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~-~~R~~~i~~nF~~l~-~~l~~~--~~~~vDg 95 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF-EGRVVLIHDNFANFF-EHLDEL--LVTKIDG 95 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc-CCcEEEEeCCHHHHH-HHHHhc--CCCcccE
Confidence 346999999999999988765112 36999999999998776543221 112344555544443 112111 1246898
Q ss_pred EEEcC
Q 008350 524 VIGGS 528 (569)
Q Consensus 524 liGGp 528 (569)
|+..-
T Consensus 96 Il~DL 100 (305)
T TIGR00006 96 ILVDL 100 (305)
T ss_pred EEEec
Confidence 88764
No 308
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=30.41 E-value=61 Score=25.06 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.7
Q ss_pred HHHHHhC---CCCHHHHHHHHHhc
Q 008350 138 LVSLASM---GYSVQEASIAMERC 158 (569)
Q Consensus 138 ~~~L~~M---gf~e~e~~~Ai~r~ 158 (569)
...|+.- ||+++||..||+.+
T Consensus 25 ~~QL~se~ge~Ft~e~A~YAv~~l 48 (48)
T PF07553_consen 25 YDQLTSEYGEGFTEEEAQYAVDHL 48 (48)
T ss_pred HHHHHhhcccCCCHHHHHHHHHcC
Confidence 3556665 99999999999863
No 309
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=30.29 E-value=1.6e+02 Score=31.18 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+-+|++-=+|.|++|.++.++--+.-.++..|+.+.-....+..|+....+ ++.+...||..-.... . -..+
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-k-----s~~a 178 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-K-----SLKA 178 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-c-----cccc
Confidence 4677999999999999999997433346899999876544444444444433 3446677776554221 1 1457
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|.|...-|-.
T Consensus 179 DaVFLDlPaP 188 (314)
T KOG2915|consen 179 DAVFLDLPAP 188 (314)
T ss_pred ceEEEcCCCh
Confidence 7777777754
No 310
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=30.11 E-value=59 Score=26.82 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=27.1
Q ss_pred ccccccCCCCHHHHHHHHHHh----C-------CCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQEN----G-------EQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~----g-------~~~~~~ile~ll~~~~ 39 (569)
++++-.|||+.+.|..+|++. | +++-..++++|+..++
T Consensus 15 ~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 15 LDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHHHHHHHHHHHhh
Confidence 467889999999998887764 3 3445567777776543
No 311
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=28.76 E-value=1.3e+02 Score=30.46 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCcceeccccChhHHHHHHHHcCC-ceeEEEeeccCHHHHHHHHHHHhhcCCCCc-cccc-ccccccchhhHHHHHhccC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGV-RMKNVVSVDISEVNRNIVRSWWEQTNQKGT-LIDF-ADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi-~~k~V~avEid~~A~~t~~~n~~~~N~~~~-~~~~-~DI~~i~~~~l~~~~~~~g 519 (569)
+.-+++++=.++|=-++-+.++-- + -.++++|+++...+..+.||...+..+. ..+. +|..+...+ ...+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~-g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~------~~~~ 131 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDD-GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR------LLDG 131 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCC-CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh------ccCC
Confidence 456688875555544444433211 2 2689999999999999999987766552 2333 244433322 1236
Q ss_pred CeeEEEEc
Q 008350 520 GFDLVIGG 527 (569)
Q Consensus 520 ~~DlliGG 527 (569)
.||+|...
T Consensus 132 ~fDliFID 139 (219)
T COG4122 132 SFDLVFID 139 (219)
T ss_pred CccEEEEe
Confidence 78888765
No 312
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=27.96 E-value=62 Score=33.48 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=33.2
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
.++|+=||.|-...+++.. ++.|+|+|+++...+.++.+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred eEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcC
Confidence 6899999999888888776 37899999999998887753
No 313
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair]
Probab=27.01 E-value=65 Score=32.25 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCC
Q 008350 49 KLIDHFVGMGFSVDMVAKAIQENGEE 74 (569)
Q Consensus 49 ~~~~~~~~MGF~~~~v~~Ai~~~G~~ 74 (569)
..+..|+.|||++.++.+|++..-.+
T Consensus 158 ~~v~AL~~LGy~~~e~~~av~~v~~~ 183 (201)
T COG0632 158 EAVEALVALGYKEKEIKKAVKKVLKE 183 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 33789999999999999999888653
No 314
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.54 E-value=70 Score=29.77 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=23.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCCc
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNTS 163 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~ 163 (569)
-++|+..|.+-|-+++|+..|+.+.|....
T Consensus 23 ~~~k~~FL~sKGLt~~EI~~al~~a~~~~~ 52 (136)
T PF04695_consen 23 LEKKIAFLESKGLTEEEIDEALGRAGSPPA 52 (136)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHT--S-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCccc
Confidence 468999999999999999999999999864
No 315
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.19 E-value=61 Score=32.09 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCC
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPN 161 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~ 161 (569)
.+|+..|..|||+++|+-.++-+-+-+
T Consensus 163 ~~~v~~l~~mGf~~~~~i~~L~~~~w~ 189 (200)
T KOG0418|consen 163 KKKVDSLIEMGFSELEAILVLSGSDWN 189 (200)
T ss_pred HHHHHHHHHhcccHHHHHHHhhccccc
Confidence 478899999999999998888766654
No 316
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.11 E-value=95 Score=34.17 Aligned_cols=85 Identities=13% Similarity=0.178 Sum_probs=56.2
Q ss_pred CCcceeccccChhHHHHHHH---H-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc-cchhhHHHHHhc
Q 008350 443 DGINVLSLFSGIGGAEVALH---R-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ-LDANRIEQMINA 517 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~---~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~-i~~~~l~~~~~~ 517 (569)
.+-+|+|.+|-.|-=+.-+. + .| .++|.|.+..-.+++++-.....-..+....+|-.. .+.++
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~g----ki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~------- 281 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQG----KIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK------- 281 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccC----CcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccc-------
Confidence 45779999998886444332 2 34 589999999988888765433333333344666665 34333
Q ss_pred cCCeeEEEEcCCCCccccCCC
Q 008350 518 FGGFDLVIGGSPCNNLAGSNR 538 (569)
Q Consensus 518 ~g~~DlliGGpPCQ~fS~ag~ 538 (569)
+.++..++..|+||+--..++
T Consensus 282 ~~~v~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 282 FRDVTYILVDPSCSGSGMVSR 302 (413)
T ss_pred ccceeEEEeCCCCCCCccccc
Confidence 358999999999998554443
No 317
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.08 E-value=43 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.1
Q ss_pred cccccCCCCHHHHHHHHHHh
Q 008350 3 DHFVGMGFSEEVVAKAIQEN 22 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~ 22 (569)
..+|.|||++.-..+.|++-
T Consensus 7 ~dLi~lGf~~~tA~~IIrqA 26 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQA 26 (59)
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 35889999999999999875
No 318
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=24.09 E-value=24 Score=27.17 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=14.9
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHH
Q 008350 49 KLIDHFVG-MGFSVDMVAKAIQE 70 (569)
Q Consensus 49 ~~~~~~~~-MGF~~~~v~~Ai~~ 70 (569)
+++..|.. |||.+++|--||++
T Consensus 4 ~vv~~Ls~tMGY~kdeI~eaL~~ 26 (46)
T PF08587_consen 4 DVVSKLSKTMGYDKDEIYEALES 26 (46)
T ss_dssp CCHHHHHCTT---HHHHHHHCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHc
Confidence 45666655 99999999999987
No 319
>PF04533 Herpes_U44: Herpes virus U44 protein; InterPro: IPR007619 This entry represents proteins from dsDNA beta-herpesvirinae and gamma-herpesvirinae viruses. The function is not known, and the proteins are named variously as U44, BSRF1, UL71, and M71. The entry also includes BSRF1.
Probab=23.83 E-value=1e+02 Score=31.05 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=23.5
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHH--HHHhccc
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILE--ALLKHSA 39 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile--~ll~~~~ 39 (569)
..|++||||+..-.-=|.++ +.|.+ .+. +||+.|.
T Consensus 38 ~~ei~~~~ppGV~~gDl~~~-~~d~e-~l~q~~LLalQ~ 74 (210)
T PF04533_consen 38 QAEIEMGFPPGVTVGDLLQN-ERDTE-VLKQAHLLALQC 74 (210)
T ss_pred HHHHHccCCCCCCHHHHHHh-cccHH-HHHHHHHHHHHH
Confidence 46899999994433334444 55655 777 8888754
No 320
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=23.47 E-value=1.9e+02 Score=29.76 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=46.9
Q ss_pred CcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhc---c
Q 008350 444 GINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINA---F 518 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~---~ 518 (569)
.-++|++=.++|=-++.+.++ +-. -.++++|+++...+..+.+|...+.. ...++.+|..++.. ++... .
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~-g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~----~l~~~~~~~ 154 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPED-GKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD----QMIEDGKYH 154 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH----HHHhccccC
Confidence 345777755555444444433 111 26999999999888889998876643 33456677655432 22211 1
Q ss_pred CCeeEEEEc
Q 008350 519 GGFDLVIGG 527 (569)
Q Consensus 519 g~~DlliGG 527 (569)
+.||+|...
T Consensus 155 ~~fD~iFiD 163 (247)
T PLN02589 155 GTFDFIFVD 163 (247)
T ss_pred CcccEEEec
Confidence 467777655
No 321
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=23.46 E-value=2.1e+02 Score=29.62 Aligned_cols=70 Identities=27% Similarity=0.295 Sum_probs=47.5
Q ss_pred ccChhH-HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEE
Q 008350 451 FSGIGG-AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 451 FSGiGG-~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliG 526 (569)
=||+|- ....|.++|. .|+..-......+.+..-+. ....+++.-||++... .-++.+..+++++|+|+-
T Consensus 15 SSGiG~A~A~~l~~~G~---~vvl~aRR~drL~~la~~~~---~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvN 87 (246)
T COG4221 15 SSGIGEATARALAEAGA---KVVLAARREERLEALADEIG---AGAALALALDVTDRAAVEAAIEALPEEFGRIDILVN 87 (246)
T ss_pred cchHHHHHHHHHHHCCC---eEEEEeccHHHHHHHHHhhc---cCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEe
Confidence 467775 3457888997 47888888887777664322 1245677888888753 234445567899999974
No 322
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=23.03 E-value=1.3e+02 Score=32.03 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=41.2
Q ss_pred CCCcceeccccChhHHH--HHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-CCCCccccc---ccccccchhhHHHHH
Q 008350 442 PDGINVLSLFSGIGGAE--VALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTLIDF---ADVQQLDANRIEQMI 515 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~s--lGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~~~~---~DI~~i~~~~l~~~~ 515 (569)
+..+++||+=.|+-..- +|....|++ .+|.|||+.+.+.++.|...+ +..+. +.. .+-..+. ..++
T Consensus 101 ~~~v~glDIGTGAscIYpLLg~~~~~W~---fvaTdID~~sl~~A~~nv~~N~~L~~~-I~l~~~~~~~~i~----~~i~ 172 (299)
T PF05971_consen 101 PEKVRGLDIGTGASCIYPLLGAKLYGWS---FVATDIDPKSLESARENVERNPNLESR-IELRKQKNPDNIF----DGII 172 (299)
T ss_dssp S---EEEEES-TTTTHHHHHHHHHH--E---EEEEES-HHHHHHHHHHHHHT-T-TTT-EEEEE--ST-SST----TTST
T ss_pred ccceEeecCCccHHHHHHHHhhhhcCCe---EEEecCCHHHHHHHHHHHHhccccccc-eEEEEcCCccccc----hhhh
Confidence 34688999988888753 577777874 699999999999999887654 32221 111 1111111 1111
Q ss_pred hccCCeeEEEEcCCCC
Q 008350 516 NAFGGFDLVIGGSPCN 531 (569)
Q Consensus 516 ~~~g~~DlliGGpPCQ 531 (569)
.....+|+.++-||=-
T Consensus 173 ~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 173 QPNERFDFTMCNPPFY 188 (299)
T ss_dssp T--S-EEEEEE-----
T ss_pred cccceeeEEecCCccc
Confidence 1224799999999954
No 323
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=23.00 E-value=1.1e+02 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=21.2
Q ss_pred CChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 45 SSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 45 ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
.+..+++..|..+|+|...+.+..+..|+
T Consensus 6 ~~~~~~~~~L~~~gl~~~~a~kl~~~yg~ 34 (94)
T PF14490_consen 6 RGLRELMAFLQEYGLSPKLAMKLYKKYGD 34 (94)
T ss_dssp ---HHHHHHHHHTT--HHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence 34567788999999999999999999997
No 324
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=22.85 E-value=2.9e+02 Score=29.54 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=44.4
Q ss_pred CCCcceeccccChhHHHHH-HHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCc-ccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVA-LHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGT-LIDFADVQQ 505 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slG-l~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~-~~~~~DI~~ 505 (569)
..+++|+|+.||.|=-=+. ++...-....+.-+|.++.+++.-+.-....+..+. .+.++|.-+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCC
Confidence 4689999999999975553 333333235788999999998877766555566555 566666543
No 325
>PTZ00217 flap endonuclease-1; Provisional
Probab=22.63 E-value=3.1e+02 Score=30.20 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHhcc--c-----------------ccC--------CCCChhHHHHHHHh-CCCC
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILEALLKHS--A-----------------SSS--------ASSSKSKLIDHFVG-MGFS 60 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile~ll~~~--~-----------------~~~--------~~ss~~~~~~~~~~-MGF~ 60 (569)
|.=+..+.+.|+++| +.+.|++.+-... - ... ..+..+.+++.|+. .||+
T Consensus 242 GIG~ktA~~Li~~~g--sle~il~~~~~~k~~~p~~~~~~~~~~~f~~p~V~~~~~~~l~w~~pD~~~l~~fl~~e~~f~ 319 (393)
T PTZ00217 242 GIGPKTAYKLIKKYK--SIEEILEHLDKTKYPVPENFDYKEARELFLNPEVTPAEEIDLKWNEPDEEGLKKFLVKEKNFN 319 (393)
T ss_pred CccHHHHHHHHHHcC--CHHHHHHHHHhcCCCCCCCCChHHHHHHhcCCCcCCCCCCCCCCCCCCHHHHHHHHHhccCCC
Confidence 344678889999997 4777877664321 0 000 13455666777764 9999
Q ss_pred HHHHHHHHHHhC
Q 008350 61 VDMVAKAIQENG 72 (569)
Q Consensus 61 ~~~v~~Ai~~~G 72 (569)
+++|..+|+++-
T Consensus 320 ~~rv~~~i~rl~ 331 (393)
T PTZ00217 320 EERVEKYIERLK 331 (393)
T ss_pred HHHHHHHHHHHH
Confidence 999999988773
No 326
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=22.26 E-value=2.9e+02 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=34.5
Q ss_pred HHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 29 LILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 29 ~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
+|.|+||-.+. -....+..|++-+-+++++.+||++-| |....++.|.
T Consensus 102 qLae~il~~s~------~~~e~v~v~a~a~v~~eeAr~aleeag--Dl~~A~k~l~ 149 (153)
T COG4008 102 QLAEYILGHSE------PPVEEVEVLADAFVTPEEAREALEEAG--DLRTAMKILR 149 (153)
T ss_pred HHHHHHhccCC------CcHHHHHHHHHhcCCHHHHHHHHHHcC--CHHHHHHHHH
Confidence 67788887222 122346788889999999999999999 4555666554
No 327
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=21.88 E-value=3.7e+02 Score=30.39 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=64.1
Q ss_pred CcceeccccChhHHHHHHHH-cCCc--eeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccC
Q 008350 444 GINVLSLFSGIGGAEVALHR-LGVR--MKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~-aGi~--~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.-+|.|-.||.||+-+-..+ .+-+ -...++.|++....+..+.|.--.+... ..+..+|.-. +...... ...+
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~-~~~~~~~--~~~~ 263 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS-NPKHDDK--DDKG 263 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc-CCccccc--CCcc
Confidence 34899999999998764443 2210 1368999999988777777654333321 1222222211 1111000 0125
Q ss_pred CeeEEEEcCCCC--ccccCC-C----CC--CCCCCCCccch-HHHHHHHHHHhcc
Q 008350 520 GFDLVIGGSPCN--NLAGSN-R----HS--RDGLEGKESSL-FYDYFRILDLVKN 564 (569)
Q Consensus 520 ~~DlliGGpPCQ--~fS~ag-~----~k--r~Gl~d~r~~L-f~~~~rII~~vrP 564 (569)
.+|+|++-||=. ++.... . .+ ..|.-.+++.- +..+..++..++|
T Consensus 264 ~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 264 KFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred ceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 699999999974 222211 0 00 11222233333 7778888888887
No 328
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed
Probab=21.67 E-value=1e+02 Score=30.31 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCC-CchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPN-TSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~-a~~~~l~ 168 (569)
.+=+..|..+||+..+|..|+.+.+.+ .++++++
T Consensus 150 ~ev~~aL~~LG~~~~~a~~~~~~~~~~~~~~~~~i 184 (192)
T PRK00116 150 EEAVSALVALGYKPKEASKAVAKILKEAASVEELI 184 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHH
Confidence 355789999999999999999999874 3555544
No 329
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=21.64 E-value=1.6e+02 Score=21.47 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=25.5
Q ss_pred cccccC--CCCHHHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 3 DHFVGM--GFSEEVVAKAIQENGEQNTDLILEALLKH 37 (569)
Q Consensus 3 ~~~~~M--Gf~~~~v~k~i~e~g~~~~~~ile~ll~~ 37 (569)
+.+.+| .++.+.|.++++++++ |.+...+.||..
T Consensus 7 ~~L~~mFP~l~~~~I~~~L~~~~g-~ve~~i~~LL~~ 42 (43)
T smart00546 7 HDLKDMFPNLDEEVIKAVLEANNG-NVEATINNLLEG 42 (43)
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHcC
Confidence 344555 2346889999999976 999999999863
No 330
>PRK08339 short chain dehydrogenase; Provisional
Probab=21.63 E-value=3e+02 Score=27.52 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=35.3
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++.++...................++..|+++... +.+-+.+.+++++|+++..
T Consensus 25 a~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~n 92 (263)
T PRK08339 25 ARVLARAGAD---VILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDIFFFS 92 (263)
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3355567863 56677776654433322211112234567788887642 1111222346889999863
No 331
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=21.43 E-value=2.1e+02 Score=24.62 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhcccccCCC--CChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 13 EVVAKAIQENGEQNTDLILEALLKHSASSSAS--SSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 13 ~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~--ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
..|-+|++|.|=+-.+.|+-+||+ +.+. +|. ..+..-|.++-. |.|||.||.+
T Consensus 22 ~~Vy~AL~EKGYnPinQivGYllS----GDPaYItsh--------------~nAR~lIr~~eR---DellEeLv~~ 76 (79)
T PF06135_consen 22 KQVYAALEEKGYNPINQIVGYLLS----GDPAYITSH--------------NNARNLIRKIER---DELLEELVRF 76 (79)
T ss_pred HHHHHHHHHcCCChHHHHHhheec----CCCccccCc--------------ccHHHHHHHHhH---HHHHHHHHHH
Confidence 468899999999999999999997 3331 111 234555666666 8899999863
No 332
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=21.37 E-value=4.5e+02 Score=23.22 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc-hhHHHHH
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN-TDSILET 82 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~-~d~~le~ 82 (569)
.+|+++.-|..+...|..+-.|+..+.|-..... .++........+|+.+||-.. .|.|.+.
T Consensus 29 ~lglse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~--------------~G~~a~~~~Li~aLr~~~l~~~Ad~I~~~ 91 (97)
T cd08316 29 KSGLSEPKIDEIKLDNPQDTAEQKVQLLRAWYQS--------------HGKTGAYRTLIKTLRKAKLCTKADKIQDI 91 (97)
T ss_pred HcCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHH--------------hCCCchHHHHHHHHHHccchhHHHHHHHH
Confidence 5799999999999999876778888887664332 223333334446666666544 3444443
No 333
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=21.35 E-value=2e+02 Score=28.17 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=41.3
Q ss_pred ceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 446 NVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 446 ~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
+++|+=||+|--.+.+.-+--+ ..++.+|....-+.-++.-....+..++.++++.+++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~-~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD-LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT-SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCCC-CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc
Confidence 7999999999555544433222 2489999999888777665556677778888888887
No 334
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=21.04 E-value=1.8e+02 Score=24.05 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=24.2
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccc
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSAS 40 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~ 40 (569)
-+||+...|...-.+|..+..+...+.|......
T Consensus 26 ~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~ 59 (88)
T smart00005 26 KLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQR 59 (88)
T ss_pred HcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHc
Confidence 3799988888887787665566777777665543
No 335
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=20.79 E-value=2.2e+02 Score=24.29 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=27.6
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccc
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSAS 40 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~ 40 (569)
.|||+..-|.+.-.+|.++-.+...+.|-..+.-
T Consensus 24 ~Lg~se~dI~~i~~~~~~~~~eq~~~mL~~W~~r 57 (84)
T cd08804 24 ELDFTEEQIHQIRIENPNSLQDQSHALLKYWLER 57 (84)
T ss_pred HcCCCHHHHHHHHHHCcccHHHHHHHHHHHHHHc
Confidence 5899999999999999876677888877765554
No 336
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.61 E-value=1e+02 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHhCCCCHHHHHHHHHHh
Q 008350 52 DHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 52 ~~~~~MGF~~~~v~~Ai~~~ 71 (569)
+.|+.||||+.-+..-|.+.
T Consensus 7 ~dLi~lGf~~~tA~~IIrqA 26 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQA 26 (59)
T ss_pred HHHHHcCCCHHHHHHHHHHH
Confidence 56899999999999988876
No 337
>TIGR03674 fen_arch flap structure-specific endonuclease. Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA
Probab=20.59 E-value=2.5e+02 Score=30.10 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHH--------------Hhccccc-----CCCCChhHHHHHHHh-CCCCHHHHHHHH
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILEAL--------------LKHSASS-----SASSSKSKLIDHFVG-MGFSVDMVAKAI 68 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile~l--------------l~~~~~~-----~~~ss~~~~~~~~~~-MGF~~~~v~~Ai 68 (569)
|.-+..+.|.|+++|. .+.|++.+ +...... -..+..+++++.|+. +||++++|..+|
T Consensus 243 GIG~ktA~kli~~~gs--ie~il~~~~~~~~~~~~~~~~f~~~~v~~~~~~~~~~pd~e~l~~fl~~e~~~~~~rv~~~~ 320 (338)
T TIGR03674 243 GIGPKTALKLIKEHGD--LEKVLKARGEDIENYDEIREFFLNPPVTDDYELKWRKPDKEGIIEFLCDEHDFSEDRVERAL 320 (338)
T ss_pred CccHHHHHHHHHHcCC--HHHHHHhhcCCCCCHHHHHHHhCCCCCCCCCCccCCCCCHHHHHHHHhhcCCCCHHHHHHHH
Confidence 5557888999999874 56665531 1100000 013445556665644 999999999999
Q ss_pred HHhC
Q 008350 69 QENG 72 (569)
Q Consensus 69 ~~~G 72 (569)
+++-
T Consensus 321 ~~l~ 324 (338)
T TIGR03674 321 ERLE 324 (338)
T ss_pred HHHH
Confidence 9984
No 338
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=20.58 E-value=2.2e+02 Score=29.48 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=35.3
Q ss_pred CcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHH
Q 008350 444 GINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n 487 (569)
+.+|||+=||.|...+++... + .++.+.++|.++.+.+..+.-
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l 77 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRL 77 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHH
Confidence 568999999999999988764 3 457899999999998876654
No 339
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=20.44 E-value=84 Score=34.18 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCC
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGP 160 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~ 160 (569)
||=+..++.|||+.|.|..-|.|+=+
T Consensus 322 ddvidKv~~MGf~rDqV~a~v~rl~E 347 (358)
T PF07223_consen 322 DDVIDKVASMGFRRDQVRATVRRLTE 347 (358)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34477789999999999988777633
No 340
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.44 E-value=72 Score=36.12 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCCCcceeccccChhHHHH--HHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 441 YPDGINVLSLFSGIGGAEV--ALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~sl--Gl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
..+++++||-+|+.|--++ +-+-.|+ ..|.|+|.++.++++.+.|..
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v--~~v~AnD~~~~aV~~i~~Nv~ 155 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGV--RQVVANDLNENAVTSIQRNVE 155 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcch--hhhcccCCCHHHHHHHHhhhh
Confidence 3468999999999997665 4444565 579999999999998887754
No 341
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=20.24 E-value=98 Score=36.35 Aligned_cols=82 Identities=28% Similarity=0.373 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHhccc-------ccC------------CCCChhHHHHHHHhCCCCHHHHHHHHH
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILEALLKHSA-------SSS------------ASSSKSKLIDHFVGMGFSVDMVAKAIQ 69 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile~ll~~~~-------~~~------------~~ss~~~~~~~~~~MGF~~~~v~~Ai~ 69 (569)
|=++.-+++.++-.|=.|.+.++|..+--+- +.. .-+++-+++.+|++|||=-..|--+|+
T Consensus 58 gp~~~dq~~ml~tlG~~dl~~l~~~~VP~~Ir~~~~l~~~~~~~E~eml~~l~~ia~kNk~~ksfIGmGYyn~~vP~~I~ 137 (1001)
T KOG2040|consen 58 GPSPTDQQQMLDTLGYKDLDELIEKTVPKSIRLKRPLKMDKPLCESEMLQHLEDIASKNKIWKSFIGMGYYNTHVPAVIL 137 (1001)
T ss_pred CCCchHHHHHHHhcChhhHHHHHHhhcchhhcccchhcCCCCcCHHHHHHHHHHHHhhhhHHHHhhccccccccCcHHHH
Confidence 5567778889999999999988886653211 111 234666788999999999888888888
Q ss_pred HhCCCc--------------hhHHHHHHHHhhhhc
Q 008350 70 ENGEEN--------------TDSILETLLTYSALG 90 (569)
Q Consensus 70 ~~G~~~--------------~d~~le~Ll~~~~~~ 90 (569)
|+=-++ +.-=||.||.||..-
T Consensus 138 RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi 172 (1001)
T KOG2040|consen 138 RNILENPGWYTQYTPYQAEISQGRLESLLNYQTMI 172 (1001)
T ss_pred HHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhh
Confidence 872222 223488999998754
No 342
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=20.03 E-value=8.2e+02 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=23.0
Q ss_pred CchHHHHHHHHhCCCCHHHHHHHHHhcCCC
Q 008350 132 PDKEEKLVSLASMGYSVQEASIAMERCGPN 161 (569)
Q Consensus 132 s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~ 161 (569)
.++..-...|+.-||+-+.+..||...-.+
T Consensus 138 ~~k~Ki~r~L~~rGFs~~~i~~~l~~~~~~ 167 (174)
T COG2137 138 KEKAKIQRFLLRRGFSYEVIKEALNEAEEE 167 (174)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHhhhc
Confidence 344555689999999999999988765433
No 343
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=20.03 E-value=1.9e+02 Score=29.26 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=51.3
Q ss_pred CcceeccccChhHHHHHHH--HcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC-
Q 008350 444 GINVLSLFSGIGGAEVALH--RLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG- 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~--~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~- 520 (569)
..+++|+=||+|--.+.++ .... + +.-+|....-+.-++.--...+.+++.++++.++++..+ ..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~--~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~---------~~~ 135 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDL--K-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE---------KKQ 135 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCC--c-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc---------ccc
Confidence 5789999999997666555 4443 3 788898887776666554566777888888888888742 12
Q ss_pred eeEEEE
Q 008350 521 FDLVIG 526 (569)
Q Consensus 521 ~DlliG 526 (569)
+|+|+.
T Consensus 136 ~D~vts 141 (215)
T COG0357 136 YDVVTS 141 (215)
T ss_pred CcEEEe
Confidence 788764
Done!