Query 008350
Match_columns 569
No_of_seqs 316 out of 1169
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ubt_Y Modification methylase 99.9 3E-25 1E-29 228.9 7.3 106 445-567 1-106 (331)
2 2qrv_A DNA (cytosine-5)-methyl 99.9 2.9E-24 9.8E-29 221.0 13.1 117 439-565 11-127 (295)
3 4h0n_A DNMT2; SAH binding, tra 99.9 1.6E-23 5.5E-28 218.7 10.7 112 443-566 2-114 (333)
4 3qv2_A 5-cytosine DNA methyltr 99.9 5E-23 1.7E-27 214.5 9.7 115 439-566 5-125 (327)
5 3g7u_A Cytosine-specific methy 99.9 9.3E-23 3.2E-27 216.2 10.2 114 444-567 2-115 (376)
6 1g55_A DNA cytosine methyltran 99.9 1.7E-22 5.8E-27 211.5 9.2 111 444-566 2-114 (343)
7 2c7p_A Modification methylase 99.9 2.4E-22 8.3E-27 209.3 10.3 106 443-566 10-115 (327)
8 3me5_A Cytosine-specific methy 99.9 2.5E-22 8.4E-27 219.0 10.8 121 443-567 87-223 (482)
9 4ft4_B DNA (cytosine-5)-methyl 99.9 2.3E-22 7.8E-27 230.7 8.5 121 442-567 210-428 (784)
10 3swr_A DNA (cytosine-5)-methyl 99.8 2.1E-22 7.3E-27 234.7 4.7 253 292-567 395-665 (1002)
11 4dkj_A Cytosine-specific methy 99.8 2.3E-21 8E-26 207.1 6.8 116 443-566 9-180 (403)
12 3av4_A DNA (cytosine-5)-methyl 99.8 4.8E-20 1.6E-24 219.7 4.4 119 443-567 850-976 (1330)
13 2pv0_B DNA (cytosine-5)-methyl 99.8 1.1E-19 3.9E-24 191.0 1.8 153 374-566 117-274 (386)
14 2qrv_B DNA (cytosine-5)-methyl 99.7 2.3E-18 7.9E-23 170.3 5.2 87 443-566 32-118 (230)
15 4ae4_A Ubiquitin-associated pr 99.4 3.7E-13 1.3E-17 120.6 7.3 87 1-89 11-117 (118)
16 4ae4_A Ubiquitin-associated pr 99.2 4.1E-11 1.4E-15 107.3 7.3 109 44-173 5-113 (118)
17 2jjq_A Uncharacterized RNA met 99.0 1.2E-09 4E-14 117.5 9.2 196 307-531 157-364 (425)
18 2lbc_A Ubiquitin carboxyl-term 98.9 3.7E-09 1.3E-13 95.5 8.7 83 2-85 7-115 (126)
19 2qrv_A DNA (cytosine-5)-methyl 98.7 9.2E-09 3.1E-13 105.6 4.8 149 249-431 133-282 (295)
20 3c0k_A UPF0064 protein YCCW; P 98.7 8.3E-08 2.9E-12 101.5 11.9 131 395-535 170-308 (396)
21 4h0n_A DNMT2; SAH binding, tra 98.6 2.8E-08 9.6E-13 103.6 4.1 171 248-433 111-327 (333)
22 3bt7_A TRNA (uracil-5-)-methyl 98.5 2.2E-07 7.6E-12 97.5 9.8 111 413-532 181-307 (369)
23 2lbc_A Ubiquitin carboxyl-term 98.5 4.6E-07 1.6E-11 81.7 10.3 107 48-172 4-114 (126)
24 1uwv_A 23S rRNA (uracil-5-)-me 98.5 4.3E-07 1.5E-11 97.4 10.4 200 307-533 162-369 (433)
25 3a27_A TYW2, uncharacterized p 98.4 5.9E-07 2E-11 90.3 10.1 126 393-530 71-196 (272)
26 3k6r_A Putative transferase PH 98.4 5.5E-07 1.9E-11 91.6 8.8 125 395-532 79-204 (278)
27 3qv2_A 5-cytosine DNA methyltr 98.3 3.5E-08 1.2E-12 102.7 -1.6 170 248-431 122-315 (327)
28 2b78_A Hypothetical protein SM 98.3 2.5E-06 8.7E-11 90.1 11.0 130 395-533 161-298 (385)
29 2yx1_A Hypothetical protein MJ 98.2 4.1E-06 1.4E-10 86.7 11.2 122 395-532 148-270 (336)
30 2frn_A Hypothetical protein PH 98.2 4.5E-06 1.6E-10 84.0 10.7 126 393-532 77-204 (278)
31 3ubt_Y Modification methylase 98.2 2.7E-07 9.2E-12 94.7 1.3 182 246-430 100-313 (331)
32 2as0_A Hypothetical protein PH 98.2 4.6E-06 1.6E-10 88.0 10.2 130 395-532 168-301 (396)
33 1wxx_A TT1595, hypothetical pr 98.2 3.9E-06 1.3E-10 88.3 9.5 128 395-533 161-292 (382)
34 2igt_A SAM dependent methyltra 98.1 4E-06 1.4E-10 87.0 7.7 85 443-534 153-239 (332)
35 4dmg_A Putative uncharacterize 98.0 1.2E-05 4E-10 85.6 9.2 77 443-530 214-290 (393)
36 1wy7_A Hypothetical protein PH 97.9 2E-05 6.7E-10 74.4 8.4 78 443-534 49-126 (207)
37 3gdh_A Trimethylguanosine synt 97.9 1.3E-05 4.5E-10 77.6 7.1 82 443-536 78-160 (241)
38 3p9n_A Possible methyltransfer 97.9 1.1E-05 3.8E-10 75.5 5.7 81 443-531 44-124 (189)
39 3ajd_A Putative methyltransfer 97.9 1.9E-05 6.6E-10 79.1 7.7 90 442-537 82-173 (274)
40 2ift_A Putative methylase HI07 97.8 1.6E-05 5.4E-10 75.8 6.0 79 444-530 54-135 (201)
41 2fpo_A Methylase YHHF; structu 97.8 2.8E-05 9.7E-10 74.1 6.9 77 444-529 55-131 (202)
42 2b9e_A NOL1/NOP2/SUN domain fa 97.8 3.7E-05 1.3E-09 79.1 7.9 90 442-537 101-191 (309)
43 3m4x_A NOL1/NOP2/SUN family pr 97.8 3.7E-05 1.3E-09 83.3 7.9 88 442-537 104-192 (456)
44 1ixk_A Methyltransferase; open 97.7 7.1E-05 2.4E-09 76.7 9.4 88 442-537 117-204 (315)
45 3axs_A Probable N(2),N(2)-dime 97.7 2.9E-05 1E-09 82.6 6.5 80 443-531 52-136 (392)
46 3lpm_A Putative methyltransfer 97.7 0.00011 3.7E-09 72.6 9.7 83 443-533 49-132 (259)
47 2c7p_A Modification methylase 97.7 1.8E-05 6.2E-10 82.1 3.6 176 246-430 110-311 (327)
48 2qrv_B DNA (cytosine-5)-methyl 97.7 2.1E-05 7.1E-10 77.8 3.7 67 248-315 122-188 (230)
49 3m6w_A RRNA methylase; rRNA me 97.7 7.3E-05 2.5E-09 81.2 8.4 88 442-537 100-187 (464)
50 3v97_A Ribosomal RNA large sub 97.7 3.4E-05 1.1E-09 87.8 5.9 82 443-533 539-622 (703)
51 3me5_A Cytosine-specific methy 97.6 7.2E-06 2.5E-10 89.5 0.2 51 246-296 217-284 (482)
52 1g55_A DNA cytosine methyltran 97.6 9.3E-06 3.2E-10 84.6 0.5 48 383-430 287-334 (343)
53 1nv8_A HEMK protein; class I a 97.6 0.00012 4.1E-09 74.0 8.5 83 443-535 123-207 (284)
54 2frx_A Hypothetical protein YE 97.6 8.9E-05 3.1E-09 80.7 8.1 88 443-537 117-204 (479)
55 1ws6_A Methyltransferase; stru 97.6 0.00014 4.7E-09 65.8 8.0 81 443-531 41-121 (171)
56 2crn_A Ubash3A protein; compac 97.6 8.2E-05 2.8E-09 59.4 5.2 46 41-86 3-48 (64)
57 4dkj_A Cytosine-specific methy 97.5 7.4E-06 2.5E-10 87.5 -1.8 175 247-431 176-382 (403)
58 2dul_A N(2),N(2)-dimethylguano 97.5 7.6E-05 2.6E-09 78.9 6.0 80 443-531 47-142 (378)
59 1oqy_A HHR23A, UV excision rep 97.5 0.00033 1.1E-08 73.9 10.8 43 44-87 165-207 (368)
60 2ekk_A UBA domain from E3 ubiq 97.5 8.3E-05 2.8E-09 55.6 4.4 40 44-85 6-45 (47)
61 1whc_A RSGI RUH-027, UBA/UBX 3 97.5 0.00013 4.5E-09 58.2 5.8 43 44-86 6-48 (64)
62 3ll7_A Putative methyltransfer 97.5 0.00011 3.7E-09 78.7 6.9 80 444-532 94-175 (410)
63 1ify_A HHR23A, UV excision rep 97.5 7.5E-05 2.6E-09 56.4 4.0 41 44-85 5-45 (49)
64 1ne2_A Hypothetical protein TA 97.5 0.00017 5.9E-09 67.7 7.4 74 443-534 51-124 (200)
65 3tm4_A TRNA (guanine N2-)-meth 97.4 0.00032 1.1E-08 73.5 9.5 81 441-530 215-296 (373)
66 2h1r_A Dimethyladenosine trans 97.4 0.00015 5.3E-09 73.7 6.7 79 442-533 41-119 (299)
67 2fhp_A Methylase, putative; al 97.4 0.00019 6.6E-09 65.9 6.7 81 443-529 44-125 (187)
68 2dak_A Ubiquitin carboxyl-term 97.4 0.00018 6.1E-09 57.1 5.5 44 43-87 5-48 (63)
69 3tma_A Methyltransferase; thum 97.4 0.0002 6.7E-09 74.2 7.5 81 442-531 202-283 (354)
70 2esr_A Methyltransferase; stru 97.4 0.00015 5E-09 66.6 5.8 79 443-530 31-110 (177)
71 3evz_A Methyltransferase; NYSG 97.4 0.00026 8.8E-09 67.8 7.7 84 440-534 52-137 (230)
72 2g3q_A Protein YBL047C; endocy 97.4 0.00016 5.5E-09 52.9 4.7 38 47-85 4-41 (43)
73 2yxl_A PH0851 protein, 450AA l 97.4 0.00036 1.2E-08 75.0 9.2 90 442-537 258-347 (450)
74 3mti_A RRNA methylase; SAM-dep 97.4 0.00036 1.2E-08 64.5 7.9 83 438-530 17-99 (185)
75 2cos_A Serine/threonine protei 97.4 0.00021 7.1E-09 54.7 4.9 46 43-88 5-50 (54)
76 2b3t_A Protein methyltransfera 97.4 0.00037 1.3E-08 69.4 8.2 82 443-534 109-190 (276)
77 2pv0_B DNA (cytosine-5)-methyl 97.3 0.00011 3.6E-09 77.7 3.9 68 248-316 278-345 (386)
78 4ft4_B DNA (cytosine-5)-methyl 97.3 7.9E-05 2.7E-09 85.4 2.9 51 378-430 680-730 (784)
79 1dus_A MJ0882; hypothetical pr 97.3 0.00083 2.8E-08 61.5 9.3 77 443-531 52-130 (194)
80 4dzr_A Protein-(glutamine-N5) 97.3 0.00022 7.7E-09 66.6 5.5 87 442-534 29-115 (215)
81 3g7u_A Cytosine-specific methy 97.3 0.00012 4.2E-09 77.3 4.0 45 383-429 311-355 (376)
82 1sqg_A SUN protein, FMU protei 97.3 0.00042 1.4E-08 73.9 7.9 88 442-537 245-332 (429)
83 2h00_A Methyltransferase 10 do 97.2 0.00041 1.4E-08 67.8 7.0 87 443-534 65-154 (254)
84 1wgn_A UBAP1, ubiquitin associ 97.2 0.00013 4.6E-09 57.3 2.7 49 37-86 9-57 (63)
85 1wji_A Tudor domain containing 97.2 0.00048 1.6E-08 54.8 6.0 40 47-87 9-48 (63)
86 1oqy_A HHR23A, UV excision rep 97.2 0.00016 5.5E-09 76.2 4.0 40 46-86 324-363 (368)
87 1vg5_A RSGI RUH-014, rhomboid 97.2 0.00045 1.5E-08 56.5 5.7 42 44-86 26-67 (73)
88 3grz_A L11 mtase, ribosomal pr 97.2 0.00085 2.9E-08 63.1 8.5 81 440-532 57-137 (205)
89 2vdv_E TRNA (guanine-N(7)-)-me 97.2 0.00067 2.3E-08 66.3 7.7 85 442-532 48-140 (246)
90 2ozv_A Hypothetical protein AT 97.2 0.0004 1.4E-08 68.9 6.0 89 443-533 36-128 (260)
91 1m6y_A S-adenosyl-methyltransf 97.1 0.0014 4.7E-08 67.2 9.7 85 443-532 26-110 (301)
92 2cos_A Serine/threonine protei 97.1 0.00023 7.7E-09 54.5 2.7 38 2-39 13-50 (54)
93 2dag_A Ubiquitin carboxyl-term 97.1 0.00052 1.8E-08 56.3 4.9 42 46-87 8-49 (74)
94 3eey_A Putative rRNA methylase 97.1 0.00066 2.3E-08 63.3 6.4 83 440-530 19-103 (197)
95 3ldu_A Putative methylase; str 97.1 0.00054 1.9E-08 72.4 6.2 103 442-561 194-334 (385)
96 3k0b_A Predicted N6-adenine-sp 97.1 0.00074 2.5E-08 71.6 7.2 80 442-530 200-317 (393)
97 3lbf_A Protein-L-isoaspartate 97.1 0.0015 5.1E-08 61.5 8.5 79 442-531 76-154 (210)
98 1z96_A DNA-damage, UBA-domain 97.0 0.00067 2.3E-08 48.4 4.6 38 46-84 3-40 (40)
99 2qm3_A Predicted methyltransfe 97.0 0.00066 2.3E-08 71.0 6.2 81 443-532 172-253 (373)
100 3dmg_A Probable ribosomal RNA 97.0 0.001 3.4E-08 70.3 7.7 77 443-531 233-309 (381)
101 2cpw_A CBL-interacting protein 97.0 0.00069 2.4E-08 54.0 4.8 39 47-85 19-57 (64)
102 2r6z_A UPF0341 protein in RSP 97.0 0.00039 1.3E-08 69.5 4.2 82 443-531 83-172 (258)
103 1yzh_A TRNA (guanine-N(7)-)-me 97.0 0.0012 4E-08 62.9 7.1 82 443-531 41-122 (214)
104 3ldg_A Putative uncharacterize 97.0 0.00093 3.2E-08 70.7 7.0 80 442-530 193-310 (384)
105 3njr_A Precorrin-6Y methylase; 97.0 0.0015 5.2E-08 62.2 7.8 76 442-528 54-130 (204)
106 3e05_A Precorrin-6Y C5,15-meth 97.0 0.0016 5.5E-08 61.2 7.7 81 442-531 39-119 (204)
107 3tqs_A Ribosomal RNA small sub 96.9 0.0011 3.8E-08 66.2 6.5 79 442-530 28-106 (255)
108 2f8l_A Hypothetical protein LM 96.9 0.00091 3.1E-08 69.0 6.0 80 443-532 130-213 (344)
109 1zq9_A Probable dimethyladenos 96.9 0.001 3.6E-08 67.0 6.2 79 442-533 27-106 (285)
110 2jy5_A Ubiquilin-1; UBA, alter 96.9 0.0015 5E-08 49.9 5.5 42 43-85 8-50 (52)
111 2nxc_A L11 mtase, ribosomal pr 96.9 0.0017 5.8E-08 64.1 7.6 77 441-530 118-194 (254)
112 2yxd_A Probable cobalt-precorr 96.9 0.0017 6E-08 58.8 7.1 76 442-529 34-109 (183)
113 3dxy_A TRNA (guanine-N(7)-)-me 96.9 0.0011 3.9E-08 64.1 5.9 83 443-531 34-116 (218)
114 1dl5_A Protein-L-isoaspartate 96.8 0.0022 7.4E-08 65.4 8.3 83 442-532 74-156 (317)
115 1ve3_A Hypothetical protein PH 96.8 0.0029 1E-07 59.7 8.6 78 440-529 35-112 (227)
116 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0016 5.5E-08 49.9 5.4 39 47-86 11-50 (53)
117 4fzv_A Putative methyltransfer 96.8 0.002 6.8E-08 67.7 8.0 85 441-533 146-236 (359)
118 2crn_A Ubash3A protein; compac 96.8 0.00075 2.6E-08 53.8 3.6 39 1-39 12-50 (64)
119 3mb5_A SAM-dependent methyltra 96.8 0.0023 8E-08 62.1 8.0 80 442-531 92-173 (255)
120 3gru_A Dimethyladenosine trans 96.8 0.0017 5.7E-08 66.4 7.1 77 442-531 49-125 (295)
121 1wiv_A UBP14, ubiquitin-specif 96.8 0.0012 4.3E-08 53.9 4.7 39 46-85 28-66 (73)
122 3fut_A Dimethyladenosine trans 96.7 0.0016 5.5E-08 65.8 6.0 76 442-531 46-121 (271)
123 4dcm_A Ribosomal RNA large sub 96.7 0.0037 1.3E-07 65.7 9.1 78 444-531 223-303 (375)
124 1whc_A RSGI RUH-027, UBA/UBX 3 96.7 0.0011 3.8E-08 52.8 3.8 38 2-39 13-50 (64)
125 2ar0_A M.ecoki, type I restric 96.6 0.0035 1.2E-07 69.1 8.6 109 419-535 146-276 (541)
126 1veg_A NEDD8 ultimate buster-1 96.6 0.0024 8.3E-08 53.4 5.5 40 47-87 29-68 (83)
127 2fca_A TRNA (guanine-N(7)-)-me 96.6 0.0033 1.1E-07 60.1 7.3 82 443-531 38-119 (213)
128 1qam_A ERMC' methyltransferase 96.6 0.0038 1.3E-07 61.4 7.9 77 442-531 29-105 (244)
129 2oyr_A UPF0341 protein YHIQ; a 96.6 0.00077 2.6E-08 67.7 2.8 78 445-532 90-176 (258)
130 3lec_A NADB-rossmann superfami 96.6 0.0048 1.7E-07 60.9 8.4 70 437-507 15-85 (230)
131 1ify_A HHR23A, UV excision rep 96.6 0.0027 9.1E-08 47.8 5.0 40 132-173 6-45 (49)
132 1vek_A UBP14, ubiquitin-specif 96.6 0.0029 9.9E-08 53.1 5.7 41 46-86 28-68 (84)
133 2pbf_A Protein-L-isoaspartate 96.6 0.0064 2.2E-07 57.9 9.0 87 441-531 78-173 (227)
134 3kr9_A SAM-dependent methyltra 96.6 0.0059 2E-07 60.1 8.8 67 437-504 9-76 (225)
135 2g3q_A Protein YBL047C; endocy 96.6 0.0017 5.8E-08 47.4 3.7 34 2-36 8-41 (43)
136 3m70_A Tellurite resistance pr 96.6 0.0044 1.5E-07 61.3 8.0 76 443-531 120-195 (286)
137 2ekk_A UBA domain from E3 ubiq 96.6 0.00085 2.9E-08 50.0 2.1 33 2-36 13-45 (47)
138 1o54_A SAM-dependent O-methylt 96.5 0.0043 1.5E-07 61.5 7.7 80 442-531 111-192 (277)
139 3q87_B N6 adenine specific DNA 96.5 0.0029 9.9E-08 58.3 5.9 70 443-534 23-92 (170)
140 3cgg_A SAM-dependent methyltra 96.5 0.0062 2.1E-07 55.6 8.1 76 441-532 44-119 (195)
141 1i1n_A Protein-L-isoaspartate 96.5 0.0053 1.8E-07 58.4 7.9 83 441-532 75-163 (226)
142 3ntv_A MW1564 protein; rossman 96.5 0.0046 1.6E-07 59.8 7.6 84 443-533 71-155 (232)
143 2xvm_A Tellurite resistance pr 96.5 0.0065 2.2E-07 56.0 8.1 75 443-529 32-106 (199)
144 1mjf_A Spermidine synthase; sp 96.5 0.0027 9.3E-08 63.8 5.9 79 442-531 74-163 (281)
145 2okc_A Type I restriction enzy 96.5 0.018 6E-07 61.6 12.5 84 443-535 171-268 (445)
146 1o9g_A RRNA methyltransferase; 96.5 0.0018 6.1E-08 63.2 4.3 46 443-489 51-98 (250)
147 1yb2_A Hypothetical protein TA 96.5 0.0056 1.9E-07 60.7 8.0 79 442-530 109-189 (275)
148 2pxx_A Uncharacterized protein 96.5 0.0047 1.6E-07 57.6 7.0 80 440-531 39-118 (215)
149 3duw_A OMT, O-methyltransferas 96.4 0.0051 1.7E-07 58.5 7.2 83 443-532 58-145 (223)
150 1dv0_A DNA repair protein HHR2 96.4 0.00094 3.2E-08 50.0 1.5 40 45-85 2-41 (47)
151 1l3i_A Precorrin-6Y methyltran 96.4 0.0053 1.8E-07 55.9 7.0 79 442-531 32-111 (192)
152 3ftd_A Dimethyladenosine trans 96.4 0.0039 1.3E-07 61.8 6.4 76 443-531 31-106 (249)
153 3ihp_A Ubiquitin carboxyl-term 96.4 0.0046 1.6E-07 71.8 7.8 83 2-85 656-757 (854)
154 2dkl_A Trinucleotide repeat co 96.4 0.0032 1.1E-07 53.0 4.6 37 48-85 22-58 (85)
155 1vbf_A 231AA long hypothetical 96.4 0.0075 2.6E-07 57.5 7.9 78 442-532 69-146 (231)
156 2dai_A Ubadc1, ubiquitin assoc 96.3 0.004 1.4E-07 52.1 5.0 40 46-86 28-67 (83)
157 3v97_A Ribosomal RNA large sub 96.3 0.0045 1.5E-07 70.4 7.0 110 442-565 189-340 (703)
158 1wgn_A UBAP1, ubiquitin associ 96.3 0.0018 6.2E-08 50.9 2.6 37 2-39 23-59 (63)
159 1g8a_A Fibrillarin-like PRE-rR 96.3 0.0053 1.8E-07 58.6 6.5 80 442-529 72-152 (227)
160 3gnl_A Uncharacterized protein 96.3 0.0086 2.9E-07 59.7 8.2 70 437-507 15-85 (244)
161 2pwy_A TRNA (adenine-N(1)-)-me 96.3 0.0075 2.6E-07 58.3 7.6 81 442-531 95-177 (258)
162 2cpw_A CBL-interacting protein 96.3 0.0023 8E-08 50.9 3.2 37 2-38 23-59 (64)
163 4azs_A Methyltransferase WBDD; 96.3 0.0029 9.9E-08 70.0 5.0 78 441-527 64-141 (569)
164 1vg5_A RSGI RUH-014, rhomboid 96.3 0.0036 1.2E-07 51.2 4.2 37 2-39 33-69 (73)
165 3dou_A Ribosomal RNA large sub 96.2 0.0081 2.8E-07 56.8 7.4 77 441-531 23-102 (191)
166 2d9s_A CBL E3 ubiquitin protei 96.2 0.0079 2.7E-07 45.9 5.7 44 44-88 6-49 (53)
167 3kkz_A Uncharacterized protein 96.2 0.0085 2.9E-07 58.6 7.7 82 441-532 44-126 (267)
168 2dag_A Ubiquitin carboxyl-term 96.2 0.0024 8.1E-08 52.3 3.0 38 2-39 13-50 (74)
169 3g89_A Ribosomal RNA small sub 96.2 0.0035 1.2E-07 61.9 4.9 79 442-526 79-157 (249)
170 2kw5_A SLR1183 protein; struct 96.2 0.013 4.3E-07 54.6 8.5 73 442-527 29-101 (202)
171 2ipx_A RRNA 2'-O-methyltransfe 96.2 0.008 2.7E-07 57.8 7.3 80 442-529 76-156 (233)
172 2ih2_A Modification methylase 96.2 0.0022 7.6E-08 67.1 3.5 74 443-535 39-113 (421)
173 3f4k_A Putative methyltransfer 96.2 0.0099 3.4E-07 57.4 8.0 80 442-531 45-125 (257)
174 3tr6_A O-methyltransferase; ce 96.2 0.0072 2.5E-07 57.4 6.8 81 444-531 65-151 (225)
175 1xxl_A YCGJ protein; structura 96.2 0.0085 2.9E-07 57.8 7.3 78 442-530 20-97 (239)
176 3jwh_A HEN1; methyltransferase 96.2 0.012 4E-07 55.7 8.1 76 443-527 29-109 (217)
177 1inl_A Spermidine synthase; be 96.2 0.0041 1.4E-07 63.1 5.1 81 442-531 89-174 (296)
178 1pjz_A Thiopurine S-methyltran 96.1 0.011 3.7E-07 56.0 7.7 75 442-526 21-107 (203)
179 3vc1_A Geranyl diphosphate 2-C 96.1 0.009 3.1E-07 60.2 7.6 75 442-527 116-192 (312)
180 1xdz_A Methyltransferase GIDB; 96.1 0.0042 1.4E-07 60.2 4.9 79 443-528 70-149 (240)
181 2yvl_A TRMI protein, hypotheti 96.1 0.01 3.6E-07 56.9 7.6 77 442-529 90-167 (248)
182 3dh0_A SAM dependent methyltra 96.1 0.0056 1.9E-07 57.7 5.5 79 442-528 36-114 (219)
183 3dr5_A Putative O-methyltransf 96.1 0.0068 2.3E-07 58.7 6.0 82 444-532 57-141 (221)
184 3hm2_A Precorrin-6Y C5,15-meth 96.1 0.015 5E-07 52.7 7.9 81 442-531 24-105 (178)
185 2qfm_A Spermine synthase; sper 96.1 0.007 2.4E-07 63.7 6.4 83 442-530 187-277 (364)
186 2dak_A Ubiquitin carboxyl-term 96.1 0.0082 2.8E-07 47.5 5.3 40 134-175 9-48 (63)
187 3jwg_A HEN1, methyltransferase 96.1 0.014 4.6E-07 55.2 7.9 63 443-506 29-96 (219)
188 3tfw_A Putative O-methyltransf 96.1 0.0045 1.5E-07 60.7 4.6 82 443-532 63-148 (248)
189 2yxe_A Protein-L-isoaspartate 96.0 0.013 4.3E-07 55.2 7.4 83 442-532 76-158 (215)
190 2knz_A Ubiquilin-4; cytoplasm, 96.0 0.0056 1.9E-07 46.8 3.9 36 2-38 15-51 (53)
191 1i9g_A Hypothetical protein RV 96.0 0.013 4.5E-07 57.5 7.8 81 442-531 98-182 (280)
192 1iy9_A Spermidine synthase; ro 96.0 0.0054 1.8E-07 61.5 5.0 80 442-530 74-158 (275)
193 3sm3_A SAM-dependent methyltra 96.0 0.011 3.8E-07 55.8 6.9 80 440-530 27-111 (235)
194 2ooa_A E3 ubiquitin-protein li 96.0 0.011 3.9E-07 44.8 5.4 37 49-86 13-49 (52)
195 1wzn_A SAM-dependent methyltra 96.0 0.015 5.3E-07 56.0 8.0 71 443-526 41-111 (252)
196 1jsx_A Glucose-inhibited divis 96.0 0.0093 3.2E-07 55.7 6.2 73 444-526 66-138 (207)
197 2bwb_A Ubiquitin-like protein 96.0 0.0098 3.3E-07 44.2 5.0 37 48-85 8-45 (46)
198 1jg1_A PIMT;, protein-L-isoasp 96.0 0.013 4.6E-07 56.4 7.4 81 442-532 90-170 (235)
199 1veg_A NEDD8 ultimate buster-1 96.0 0.0083 2.8E-07 50.2 5.1 42 132-175 27-68 (83)
200 3u81_A Catechol O-methyltransf 95.9 0.006 2.1E-07 58.2 4.8 90 443-534 58-148 (221)
201 3h2b_A SAM-dependent methyltra 95.9 0.016 5.4E-07 54.0 7.6 69 444-528 42-110 (203)
202 3e23_A Uncharacterized protein 95.9 0.022 7.4E-07 53.5 8.6 71 440-528 40-110 (211)
203 3l8d_A Methyltransferase; stru 95.9 0.012 4.2E-07 56.1 7.0 76 438-527 48-123 (242)
204 3mgg_A Methyltransferase; NYSG 95.9 0.014 4.9E-07 57.0 7.6 81 441-530 35-115 (276)
205 3uzu_A Ribosomal RNA small sub 95.9 0.0073 2.5E-07 61.1 5.6 82 442-529 41-123 (279)
206 1fbn_A MJ fibrillarin homologu 95.9 0.014 4.7E-07 56.2 7.3 78 442-528 73-151 (230)
207 3r0q_C Probable protein argini 95.9 0.012 4.1E-07 61.6 7.4 75 442-528 62-137 (376)
208 3pfg_A N-methyltransferase; N, 95.9 0.016 5.3E-07 56.5 7.7 74 438-528 45-118 (263)
209 1z96_A DNA-damage, UBA-domain 95.9 0.0073 2.5E-07 42.9 3.9 29 133-161 3-31 (40)
210 2gpy_A O-methyltransferase; st 95.9 0.01 3.4E-07 57.0 6.2 84 443-532 54-138 (233)
211 1wji_A Tudor domain containing 95.9 0.0098 3.4E-07 47.2 5.0 39 135-175 10-48 (63)
212 3q7e_A Protein arginine N-meth 95.9 0.012 4E-07 61.0 7.1 76 443-529 66-142 (349)
213 4htf_A S-adenosylmethionine-de 95.9 0.014 4.9E-07 57.5 7.4 78 442-529 67-145 (285)
214 3adn_A Spermidine synthase; am 95.9 0.0071 2.4E-07 61.5 5.2 81 442-530 82-167 (294)
215 3g5l_A Putative S-adenosylmeth 95.8 0.017 5.8E-07 55.8 7.7 73 443-528 44-116 (253)
216 1vek_A UBP14, ubiquitin-specif 95.8 0.0046 1.6E-07 51.8 3.1 38 2-39 33-70 (84)
217 2jy5_A Ubiquilin-1; UBA, alter 95.8 0.0053 1.8E-07 46.8 3.1 34 2-36 16-50 (52)
218 1vl5_A Unknown conserved prote 95.8 0.016 5.3E-07 56.4 7.3 77 443-530 37-113 (260)
219 2b25_A Hypothetical protein; s 95.8 0.017 5.7E-07 59.0 7.8 84 442-532 104-199 (336)
220 3ofk_A Nodulation protein S; N 95.8 0.012 4.2E-07 55.3 6.1 71 443-527 51-121 (216)
221 1zx0_A Guanidinoacetate N-meth 95.7 0.011 3.7E-07 57.0 5.7 76 442-526 59-134 (236)
222 3iv6_A Putative Zn-dependent a 95.7 0.013 4.4E-07 58.8 6.3 77 442-533 44-123 (261)
223 3lkd_A Type I restriction-modi 95.7 0.0057 2E-07 67.6 4.1 108 419-531 194-308 (542)
224 3m33_A Uncharacterized protein 95.7 0.025 8.7E-07 54.0 8.2 74 441-528 46-119 (226)
225 3ckk_A TRNA (guanine-N(7)-)-me 95.7 0.017 6E-07 56.4 7.0 84 443-532 46-135 (235)
226 2ex4_A Adrenal gland protein A 95.7 0.01 3.5E-07 57.1 5.3 75 443-527 79-153 (241)
227 2fyt_A Protein arginine N-meth 95.6 0.016 5.4E-07 59.8 6.9 76 442-528 63-139 (340)
228 1y8c_A S-adenosylmethionine-de 95.6 0.027 9.2E-07 53.5 8.1 74 442-528 36-109 (246)
229 3s1s_A Restriction endonucleas 95.6 0.015 5.2E-07 66.9 7.0 83 442-531 320-410 (878)
230 1g6q_1 HnRNP arginine N-methyl 95.6 0.018 6.3E-07 58.9 7.1 76 443-529 38-114 (328)
231 1wiv_A UBP14, ubiquitin-specif 95.6 0.0081 2.8E-07 49.0 3.5 36 2-38 33-68 (73)
232 3bzb_A Uncharacterized protein 95.6 0.031 1.1E-06 55.8 8.5 44 443-488 79-123 (281)
233 2yqz_A Hypothetical protein TT 95.6 0.018 6.2E-07 55.5 6.6 77 441-529 37-113 (263)
234 3dtn_A Putative methyltransfer 95.6 0.019 6.6E-07 54.6 6.7 78 442-531 43-120 (234)
235 1r18_A Protein-L-isoaspartate( 95.6 0.022 7.4E-07 54.5 7.1 83 441-532 82-175 (227)
236 2dah_A Ubiquilin-3; UBA domain 95.5 0.022 7.6E-07 43.7 5.7 40 46-86 8-48 (54)
237 2avd_A Catechol-O-methyltransf 95.5 0.019 6.4E-07 54.6 6.4 85 443-531 69-156 (229)
238 4fp9_B Mterf domain-containing 95.5 0.071 2.4E-06 55.4 11.2 54 2-72 50-103 (335)
239 3hem_A Cyclopropane-fatty-acyl 95.4 0.035 1.2E-06 55.4 8.5 73 442-528 71-145 (302)
240 2y1w_A Histone-arginine methyl 95.4 0.023 7.8E-07 58.7 7.2 75 443-529 50-125 (348)
241 2gb4_A Thiopurine S-methyltran 95.4 0.021 7.3E-07 56.4 6.7 74 443-526 68-158 (252)
242 1wr1_B Ubiquitin-like protein 95.4 0.018 6.2E-07 44.9 4.8 37 48-85 18-55 (58)
243 2pjd_A Ribosomal RNA small sub 95.4 0.022 7.6E-07 58.5 6.9 76 444-531 197-272 (343)
244 2zig_A TTHA0409, putative modi 95.4 0.02 6.8E-07 57.9 6.4 45 443-490 235-279 (297)
245 3ggd_A SAM-dependent methyltra 95.4 0.036 1.2E-06 53.2 7.9 83 439-531 52-135 (245)
246 2oo3_A Protein involved in cat 95.4 0.013 4.6E-07 59.5 5.0 79 444-531 92-170 (283)
247 3d2l_A SAM-dependent methyltra 95.3 0.033 1.1E-06 52.9 7.6 74 441-528 31-104 (243)
248 3dlc_A Putative S-adenosyl-L-m 95.3 0.027 9.3E-07 52.4 6.8 76 445-531 45-122 (219)
249 3g2m_A PCZA361.24; SAM-depende 95.3 0.021 7.1E-07 57.0 6.3 71 444-526 83-156 (299)
250 3c3y_A Pfomt, O-methyltransfer 95.3 0.022 7.4E-07 55.4 6.3 86 443-532 70-159 (237)
251 1ri5_A MRNA capping enzyme; me 95.3 0.019 6.4E-07 56.5 5.8 79 441-528 62-141 (298)
252 3b3j_A Histone-arginine methyl 95.3 0.023 7.8E-07 61.7 6.8 75 443-529 158-233 (480)
253 1vej_A Riken cDNA 4931431F19; 95.2 0.024 8.1E-07 46.4 5.2 39 46-85 28-67 (74)
254 1yub_A Ermam, rRNA methyltrans 95.2 0.0023 8E-08 62.6 -1.0 78 442-532 28-105 (245)
255 2i7c_A Spermidine synthase; tr 95.2 0.02 6.9E-07 57.5 5.8 81 442-530 77-161 (283)
256 2oo9_A E3 ubiquitin-protein li 95.2 0.032 1.1E-06 41.2 5.2 42 45-87 2-43 (46)
257 3ou2_A SAM-dependent methyltra 95.2 0.035 1.2E-06 51.8 7.1 71 441-527 44-114 (218)
258 3ujc_A Phosphoethanolamine N-m 95.2 0.025 8.5E-07 54.5 6.2 74 442-528 54-128 (266)
259 4hc4_A Protein arginine N-meth 95.2 0.021 7.3E-07 60.2 6.0 71 444-526 84-155 (376)
260 3c3p_A Methyltransferase; NP_9 95.2 0.015 5.1E-07 54.8 4.4 81 443-531 56-137 (210)
261 1nkv_A Hypothetical protein YJ 95.1 0.041 1.4E-06 53.0 7.5 63 442-507 35-99 (256)
262 3lcc_A Putative methyl chlorid 95.1 0.032 1.1E-06 53.3 6.7 73 445-529 68-141 (235)
263 2pt6_A Spermidine synthase; tr 95.1 0.019 6.4E-07 59.0 5.3 81 442-530 115-199 (321)
264 2o07_A Spermidine synthase; st 95.1 0.016 5.6E-07 59.0 4.8 81 442-530 94-178 (304)
265 3ihp_A Ubiquitin carboxyl-term 95.1 0.065 2.2E-06 62.3 10.4 109 46-175 651-759 (854)
266 3uwp_A Histone-lysine N-methyl 95.1 0.035 1.2E-06 59.5 7.5 82 441-530 171-262 (438)
267 1sui_A Caffeoyl-COA O-methyltr 95.1 0.024 8.1E-07 55.7 5.8 83 443-532 79-168 (247)
268 3khk_A Type I restriction-modi 95.1 0.031 1.1E-06 61.7 7.2 103 419-531 222-340 (544)
269 3av4_A DNA (cytosine-5)-methyl 95.0 0.014 4.8E-07 70.5 4.6 45 382-428 1251-1295(1330)
270 4gek_A TRNA (CMO5U34)-methyltr 95.0 0.055 1.9E-06 53.7 8.2 78 441-528 68-147 (261)
271 1xtp_A LMAJ004091AAA; SGPP, st 95.0 0.022 7.7E-07 54.6 5.1 74 443-528 93-166 (254)
272 1dv0_A DNA repair protein HHR2 94.9 0.012 4.1E-07 43.9 2.4 34 2-36 8-41 (47)
273 3hnr_A Probable methyltransfer 94.9 0.034 1.2E-06 52.2 6.2 71 443-529 45-115 (220)
274 3bkw_A MLL3908 protein, S-aden 94.9 0.049 1.7E-06 51.8 7.2 73 443-528 43-115 (243)
275 2bwb_A Ubiquitin-like protein 94.9 0.019 6.6E-07 42.6 3.3 34 2-36 11-45 (46)
276 1qyr_A KSGA, high level kasuga 94.9 0.038 1.3E-06 54.9 6.6 82 442-531 20-101 (252)
277 3bgv_A MRNA CAP guanine-N7 met 94.9 0.019 6.5E-07 57.7 4.5 82 442-528 33-122 (313)
278 2dai_A Ubadc1, ubiquitin assoc 94.8 0.016 5.6E-07 48.4 3.3 37 2-39 33-69 (83)
279 3swr_A DNA (cytosine-5)-methyl 94.8 0.017 5.7E-07 68.1 4.5 45 383-429 942-986 (1002)
280 2juj_A E3 ubiquitin-protein li 94.8 0.033 1.1E-06 42.7 4.5 45 44-89 4-48 (56)
281 2dkl_A Trinucleotide repeat co 94.8 0.016 5.4E-07 48.7 3.0 37 2-39 25-61 (85)
282 1xj5_A Spermidine synthase 1; 94.8 0.025 8.7E-07 58.5 5.2 81 442-529 119-203 (334)
283 3ocj_A Putative exported prote 94.8 0.023 7.9E-07 57.0 4.8 80 440-528 115-195 (305)
284 1uir_A Polyamine aminopropyltr 94.8 0.023 7.9E-07 58.0 4.9 81 442-530 76-161 (314)
285 2p8j_A S-adenosylmethionine-de 94.8 0.077 2.6E-06 49.3 8.1 76 441-528 21-97 (209)
286 3bwc_A Spermidine synthase; SA 94.7 0.039 1.3E-06 55.9 6.5 82 442-530 94-179 (304)
287 3k9o_A Ubiquitin-conjugating e 94.7 0.035 1.2E-06 53.4 5.7 41 44-85 160-200 (201)
288 2cp8_A NEXT to BRCA1 gene 1 pr 94.6 0.015 5.3E-07 44.7 2.3 37 2-39 13-50 (54)
289 3orh_A Guanidinoacetate N-meth 94.6 0.022 7.5E-07 55.3 4.0 83 442-533 59-141 (236)
290 2p7i_A Hypothetical protein; p 94.6 0.047 1.6E-06 51.7 6.2 57 443-506 42-98 (250)
291 2b2c_A Spermidine synthase; be 94.5 0.035 1.2E-06 56.9 5.5 81 442-530 107-191 (314)
292 3gjy_A Spermidine synthase; AP 94.5 0.03 1E-06 57.8 5.0 78 444-530 90-169 (317)
293 3r3h_A O-methyltransferase, SA 94.5 0.011 3.7E-07 58.0 1.6 88 443-532 60-148 (242)
294 4hg2_A Methyltransferase type 94.5 0.024 8.4E-07 56.3 4.1 72 439-527 35-106 (257)
295 3fzg_A 16S rRNA methylase; met 94.5 0.06 2E-06 52.0 6.6 52 441-493 47-98 (200)
296 3bxo_A N,N-dimethyltransferase 94.4 0.058 2E-06 51.1 6.5 68 442-526 39-106 (239)
297 3gu3_A Methyltransferase; alph 94.4 0.072 2.5E-06 52.7 7.4 78 442-529 21-98 (284)
298 3g5t_A Trans-aconitate 3-methy 94.4 0.085 2.9E-06 52.5 7.9 84 442-529 35-122 (299)
299 4df3_A Fibrillarin-like rRNA/T 94.3 0.052 1.8E-06 53.5 6.1 83 442-532 76-159 (233)
300 2gs9_A Hypothetical protein TT 94.3 0.071 2.4E-06 49.8 6.7 74 438-529 31-104 (211)
301 2o57_A Putative sarcosine dime 94.3 0.084 2.9E-06 52.2 7.5 75 442-527 81-157 (297)
302 1g60_A Adenine-specific methyl 94.2 0.046 1.6E-06 54.1 5.5 45 442-489 211-255 (260)
303 2fk8_A Methoxy mycolic acid sy 94.2 0.09 3.1E-06 52.7 7.7 72 442-527 89-162 (318)
304 2hnk_A SAM-dependent O-methylt 94.0 0.069 2.4E-06 51.4 6.2 64 443-506 60-124 (239)
305 3id6_C Fibrillarin-like rRNA/T 94.0 0.075 2.6E-06 52.3 6.5 80 442-529 75-155 (232)
306 2p35_A Trans-aconitate 2-methy 94.0 0.098 3.4E-06 50.2 7.2 73 442-531 32-106 (259)
307 1ej0_A FTSJ; methyltransferase 94.0 0.029 1E-06 49.8 3.2 79 442-533 21-101 (180)
308 2cp8_A NEXT to BRCA1 gene 1 pr 94.0 0.047 1.6E-06 42.0 3.8 38 48-86 10-48 (54)
309 3bus_A REBM, methyltransferase 94.0 0.11 3.7E-06 50.6 7.5 77 442-529 60-138 (273)
310 2ooa_A E3 ubiquitin-protein li 94.0 0.04 1.4E-06 41.9 3.3 34 2-36 15-48 (52)
311 2dah_A Ubiquilin-3; UBA domain 93.9 0.038 1.3E-06 42.4 3.3 37 2-39 13-50 (54)
312 3cbg_A O-methyltransferase; cy 93.9 0.13 4.4E-06 49.5 7.8 84 444-531 73-159 (232)
313 1vej_A Riken cDNA 4931431F19; 93.9 0.041 1.4E-06 45.0 3.5 35 2-37 33-68 (74)
314 1wr1_B Ubiquitin-like protein 93.8 0.035 1.2E-06 43.3 2.9 34 2-36 21-55 (58)
315 2avn_A Ubiquinone/menaquinone 93.8 0.14 4.8E-06 49.8 8.0 72 442-530 53-124 (260)
316 3g07_A 7SK snRNA methylphospha 93.7 0.089 3E-06 52.6 6.6 44 443-488 46-90 (292)
317 3thr_A Glycine N-methyltransfe 93.7 0.063 2.2E-06 52.9 5.4 77 443-527 57-137 (293)
318 1kpg_A CFA synthase;, cyclopro 93.7 0.14 4.8E-06 50.3 7.8 72 442-527 63-136 (287)
319 2cwb_A Chimera of immunoglobul 93.6 0.1 3.5E-06 45.7 5.9 38 47-85 66-104 (108)
320 3e8s_A Putative SAM dependent 93.6 0.055 1.9E-06 50.5 4.5 75 443-530 52-126 (227)
321 2dna_A Unnamed protein product 93.6 0.059 2E-06 43.2 3.9 39 2-41 23-62 (67)
322 3fpf_A Mtnas, putative unchara 93.5 0.14 4.9E-06 52.3 7.7 74 440-526 119-194 (298)
323 3dli_A Methyltransferase; PSI- 93.4 0.079 2.7E-06 50.8 5.3 43 441-486 39-81 (240)
324 3ccf_A Cyclopropane-fatty-acyl 93.3 0.16 5.4E-06 49.9 7.5 70 443-529 57-126 (279)
325 2vdw_A Vaccinia virus capping 93.2 0.058 2E-06 54.7 4.2 48 442-491 47-94 (302)
326 3i9f_A Putative type 11 methyl 93.1 0.16 5.5E-06 45.6 6.7 69 442-529 16-84 (170)
327 2dna_A Unnamed protein product 93.1 0.091 3.1E-06 42.1 4.2 37 49-86 21-58 (67)
328 1nt2_A Fibrillarin-like PRE-rR 93.0 0.15 5.3E-06 48.6 6.6 78 442-527 56-133 (210)
329 2nyu_A Putative ribosomal RNA 93.0 0.2 7E-06 45.9 7.3 78 441-530 20-107 (196)
330 2d9s_A CBL E3 ubiquitin protei 93.0 0.06 2.1E-06 41.1 2.9 35 2-37 13-47 (53)
331 3htx_A HEN1; HEN1, small RNA m 93.0 0.11 3.7E-06 60.2 6.3 65 443-507 721-791 (950)
332 2cmg_A Spermidine synthase; tr 92.9 0.093 3.2E-06 52.3 5.1 73 442-528 71-147 (262)
333 2plw_A Ribosomal RNA methyltra 92.7 0.16 5.5E-06 46.9 6.2 78 442-531 21-117 (201)
334 3mq2_A 16S rRNA methyltransfer 92.7 0.077 2.6E-06 50.0 4.0 65 442-507 26-94 (218)
335 1u2z_A Histone-lysine N-methyl 92.6 0.18 6.1E-06 54.2 7.2 83 442-530 241-333 (433)
336 1wj7_A Hypothetical protein (R 92.4 0.13 4.5E-06 44.6 4.7 38 47-85 39-77 (104)
337 3ege_A Putative methyltransfer 92.2 0.12 4.1E-06 50.4 4.8 72 442-530 33-104 (261)
338 3p2e_A 16S rRNA methylase; met 91.9 0.14 4.9E-06 49.4 4.9 64 443-507 24-91 (225)
339 3ufb_A Type I restriction-modi 91.8 0.32 1.1E-05 53.4 8.1 84 443-530 217-312 (530)
340 1p91_A Ribosomal RNA large sub 91.5 0.32 1.1E-05 47.2 6.9 71 442-528 84-156 (269)
341 3e46_A Ubiquitin-conjugating e 91.3 0.22 7.5E-06 49.8 5.6 41 44-85 212-252 (253)
342 4fsd_A Arsenic methyltransfera 91.2 0.22 7.4E-06 51.8 5.8 80 443-528 83-174 (383)
343 3cc8_A Putative methyltransfer 91.0 0.3 1E-05 45.5 5.9 54 442-505 31-84 (230)
344 1tte_A Ubiquitin-conjugating e 90.8 0.3 1E-05 47.6 5.9 37 48-84 170-214 (215)
345 1wg8_A Predicted S-adenosylmet 90.5 0.73 2.5E-05 46.8 8.5 80 443-532 22-101 (285)
346 3bkx_A SAM-dependent methyltra 90.4 0.3 1E-05 47.4 5.6 82 442-530 42-132 (275)
347 2juj_A E3 ubiquitin-protein li 90.4 0.28 9.5E-06 37.6 4.0 29 134-162 7-35 (56)
348 1wj7_A Hypothetical protein (R 90.2 0.29 1E-05 42.4 4.6 28 134-161 39-67 (104)
349 3dfg_A Xcrecx, regulatory prot 90.1 1.6 5.6E-05 40.2 10.1 118 3-158 39-159 (162)
350 2oo9_A E3 ubiquitin-protein li 90.0 0.32 1.1E-05 36.0 3.9 30 133-162 3-32 (46)
351 2cwb_A Chimera of immunoglobul 89.2 0.27 9.3E-06 43.0 3.7 34 2-36 70-104 (108)
352 2i62_A Nicotinamide N-methyltr 89.1 0.14 4.7E-06 49.2 2.0 45 443-489 56-100 (265)
353 1vlm_A SAM-dependent methyltra 89.1 0.4 1.4E-05 45.2 5.1 66 440-528 45-110 (219)
354 3m66_A Mterf3, mterf domain-co 88.7 1.2 4.2E-05 43.9 8.6 71 2-72 9-101 (270)
355 1qzz_A RDMB, aclacinomycin-10- 87.5 1.1 3.8E-05 45.7 7.7 77 442-530 181-258 (374)
356 2r3s_A Uncharacterized protein 87.4 0.69 2.4E-05 46.3 6.0 80 442-532 164-244 (335)
357 1boo_A Protein (N-4 cytosine-s 87.3 0.31 1.1E-05 49.8 3.3 44 442-488 251-294 (323)
358 3hp7_A Hemolysin, putative; st 87.0 0.3 1E-05 49.6 3.0 39 443-483 85-123 (291)
359 2oxt_A Nucleoside-2'-O-methylt 86.3 0.14 4.6E-06 51.2 -0.0 70 441-529 72-149 (265)
360 1ixs_A Holliday junction DNA h 86.2 0.85 2.9E-05 35.8 4.5 34 135-168 18-54 (62)
361 3lcv_B Sisomicin-gentamicin re 86.2 0.62 2.1E-05 47.1 4.7 50 442-492 131-180 (281)
362 2a14_A Indolethylamine N-methy 85.9 0.62 2.1E-05 45.5 4.5 45 443-489 55-99 (263)
363 1tw3_A COMT, carminomycin 4-O- 85.9 1.1 3.8E-05 45.5 6.6 76 443-530 183-259 (360)
364 2wa2_A Non-structural protein 85.8 0.21 7.1E-06 50.2 1.0 70 441-529 80-157 (276)
365 2p41_A Type II methyltransfera 85.3 0.14 4.8E-06 52.1 -0.5 75 441-531 80-159 (305)
366 3d5l_A Regulatory protein RECX 85.1 1.6 5.4E-05 42.4 6.9 125 3-162 83-210 (221)
367 2qsf_X RAD23, UV excision repa 84.7 0.69 2.4E-05 43.6 3.9 39 46-85 129-167 (171)
368 3frh_A 16S rRNA methylase; met 84.4 1.4 4.7E-05 44.0 6.2 45 442-490 104-148 (253)
369 2xyq_A Putative 2'-O-methyl tr 83.7 1.1 3.9E-05 45.3 5.4 67 441-531 61-134 (290)
370 3k9o_A Ubiquitin-conjugating e 83.4 0.79 2.7E-05 43.9 3.8 29 134-162 163-191 (201)
371 1x19_A CRTF-related protein; m 83.2 1.6 5.4E-05 44.5 6.3 63 442-506 189-252 (359)
372 4fp9_B Mterf domain-containing 83.0 0.87 3E-05 47.2 4.2 115 25-159 22-138 (335)
373 3e3v_A Regulatory protein RECX 82.2 5.4 0.00019 37.2 9.1 123 3-161 40-166 (177)
374 4auk_A Ribosomal RNA large sub 80.5 1.5 5.2E-05 46.1 5.0 75 440-532 208-282 (375)
375 4e2x_A TCAB9; kijanose, tetron 80.1 1.4 4.8E-05 45.8 4.6 42 442-486 106-147 (416)
376 3opn_A Putative hemolysin; str 80.0 0.59 2E-05 45.4 1.6 42 443-486 37-78 (232)
377 1i4w_A Mitochondrial replicati 79.7 3.8 0.00013 42.7 7.7 60 444-507 59-118 (353)
378 3mva_O Transcription terminati 79.5 6.3 0.00022 40.3 9.3 17 142-158 248-264 (343)
379 1eg2_A Modification methylase 78.7 1.5 5.1E-05 44.8 4.2 44 442-488 241-287 (319)
380 3ua3_A Protein arginine N-meth 78.2 1.3 4.5E-05 50.3 3.9 82 444-529 410-504 (745)
381 2bm8_A Cephalosporin hydroxyla 78.1 0.57 2E-05 45.4 0.8 74 444-528 82-160 (236)
382 4gqb_A Protein arginine N-meth 76.9 3.6 0.00012 46.2 6.9 72 444-526 358-434 (637)
383 2qsf_X RAD23, UV excision repa 76.8 1.7 5.7E-05 41.0 3.5 35 128-162 124-158 (171)
384 2pwq_A Ubiquitin conjugating e 74.2 0.88 3E-05 44.3 1.0 37 48-85 178-214 (216)
385 3mcz_A O-methyltransferase; ad 73.8 4.1 0.00014 41.1 5.9 79 444-531 180-259 (352)
386 3sso_A Methyltransferase; macr 73.1 2 6.8E-05 45.9 3.4 75 441-527 214-295 (419)
387 1ixs_A Holliday junction DNA h 72.9 6.2 0.00021 30.8 5.4 26 46-71 16-41 (62)
388 1tte_A Ubiquitin-conjugating e 72.0 2.2 7.6E-05 41.4 3.3 29 134-162 169-197 (215)
389 3c1d_A Protein ORAA, regulator 71.7 21 0.0007 32.5 9.6 111 10-158 44-157 (159)
390 3o4f_A Spermidine synthase; am 71.6 5.1 0.00017 40.7 5.9 81 441-530 81-167 (294)
391 2zfu_A Nucleomethylin, cerebra 71.0 1.9 6.4E-05 40.1 2.4 58 442-528 66-123 (215)
392 3e46_A Ubiquitin-conjugating e 69.0 3.4 0.00011 41.2 3.8 30 133-162 214-243 (253)
393 2dhy_A CUE domain-containing p 66.8 3.9 0.00013 32.6 3.1 39 3-43 23-64 (67)
394 3dp7_A SAM-dependent methyltra 66.8 9.8 0.00033 38.8 7.0 62 443-506 179-241 (363)
395 3cvo_A Methyltransferase-like 66.6 11 0.00038 36.0 6.8 58 444-506 31-92 (202)
396 2dhy_A CUE domain-containing p 66.5 9.8 0.00033 30.3 5.3 44 44-89 15-61 (67)
397 3dfg_A Xcrecx, regulatory prot 66.2 3.4 0.00012 38.0 3.1 69 3-73 89-161 (162)
398 3gwz_A MMCR; methyltransferase 65.3 12 0.0004 38.3 7.3 80 442-533 201-281 (369)
399 2ip2_A Probable phenazine-spec 64.5 4.1 0.00014 40.8 3.5 74 445-530 169-243 (334)
400 4fs3_A Enoyl-[acyl-carrier-pro 61.9 14 0.00047 35.8 6.7 72 453-527 19-93 (256)
401 1cuk_A RUVA protein; DNA repai 61.5 6.5 0.00022 37.8 4.1 34 135-168 161-195 (203)
402 3c6k_A Spermine synthase; sper 61.0 24 0.00081 37.1 8.6 81 444-530 206-294 (381)
403 3e3v_A Regulatory protein RECX 60.7 3.8 0.00013 38.3 2.3 71 4-74 92-166 (177)
404 3c1d_A Protein ORAA, regulator 58.9 8.7 0.0003 35.1 4.3 66 4-71 88-157 (159)
405 2k4m_A TR8_protein, UPF0146 pr 58.8 9.1 0.00031 35.3 4.4 39 441-482 33-73 (153)
406 3ged_A Short-chain dehydrogena 56.4 16 0.00055 35.8 6.1 68 452-527 12-82 (247)
407 3i53_A O-methyltransferase; CO 55.8 18 0.00063 36.0 6.6 59 444-504 170-229 (332)
408 3mva_O Transcription terminati 55.4 21 0.00071 36.4 7.0 24 135-158 124-147 (343)
409 2ztd_A Holliday junction ATP-d 54.7 11 0.00039 36.4 4.5 35 135-169 165-202 (212)
410 2w84_A Peroxisomal membrane pr 54.7 14 0.00046 29.8 4.2 30 134-163 35-64 (70)
411 2qe6_A Uncharacterized protein 53.9 13 0.00044 36.6 5.0 84 444-531 78-168 (274)
412 3tka_A Ribosomal RNA small sub 53.3 33 0.0011 35.6 8.0 83 443-532 57-140 (347)
413 2aot_A HMT, histamine N-methyl 53.1 30 0.001 33.7 7.5 47 443-489 52-103 (292)
414 3d5l_A Regulatory protein RECX 52.9 5.8 0.0002 38.4 2.2 70 4-73 135-208 (221)
415 1wgl_A TOLL-interacting protei 52.2 18 0.0006 28.0 4.4 41 46-88 8-51 (59)
416 2kna_A Baculoviral IAP repeat- 50.3 9.8 0.00033 32.7 3.0 38 2-39 31-74 (104)
417 2kna_A Baculoviral IAP repeat- 48.4 25 0.00087 30.1 5.3 40 49-88 29-74 (104)
418 2dpm_A M.dpnii 1, protein (ade 47.8 15 0.00051 36.8 4.3 43 438-485 29-72 (284)
419 3m66_A Mterf3, mterf domain-co 46.9 40 0.0014 32.9 7.3 18 135-152 184-202 (270)
420 2g72_A Phenylethanolamine N-me 46.4 8.1 0.00028 37.7 2.1 44 443-488 71-114 (289)
421 4fn4_A Short chain dehydrogena 45.8 35 0.0012 33.5 6.6 66 457-526 23-90 (254)
422 3ff5_A PEX14P, peroxisomal bio 44.0 20 0.00068 27.4 3.4 25 134-158 30-54 (54)
423 2g1p_A DNA adenine methylase; 43.9 13 0.00046 37.0 3.3 43 438-485 22-64 (278)
424 1wgl_A TOLL-interacting protei 42.1 26 0.0009 27.0 4.0 43 3-46 14-58 (59)
425 2ztd_A Holliday junction ATP-d 40.3 81 0.0028 30.3 8.1 26 46-71 163-188 (212)
426 4g81_D Putative hexonate dehyd 40.1 56 0.0019 32.0 7.1 67 457-527 25-93 (255)
427 1ixr_A Holliday junction DNA h 39.8 8.8 0.0003 36.5 1.1 25 47-71 146-170 (191)
428 1af7_A Chemotaxis receptor met 39.2 23 0.00077 35.2 4.1 44 443-487 105-156 (274)
429 1fp1_D Isoliquiritigenin 2'-O- 39.1 25 0.00087 35.7 4.6 56 442-505 208-263 (372)
430 3giw_A Protein of unknown func 36.0 11 0.00039 37.8 1.3 61 445-507 80-144 (277)
431 1ixr_A Holliday junction DNA h 34.8 8.2 0.00028 36.7 0.0 32 136-167 148-182 (191)
432 3o38_A Short chain dehydrogena 34.7 83 0.0028 29.8 7.3 68 457-527 39-108 (266)
433 1cuk_A RUVA protein; DNA repai 34.3 39 0.0013 32.3 4.7 24 48-71 161-184 (203)
434 1yf3_A DNA adenine methylase; 33.1 15 0.00052 36.1 1.6 44 438-487 19-62 (259)
435 3pk0_A Short-chain dehydrogena 33.1 74 0.0025 30.4 6.6 67 458-527 27-95 (262)
436 3oig_A Enoyl-[acyl-carrier-pro 32.6 82 0.0028 29.8 6.9 74 452-528 19-95 (266)
437 2pwq_A Ubiquitin conjugating e 32.4 9.4 0.00032 37.0 0.0 28 135-162 178-205 (216)
438 1fp2_A Isoflavone O-methyltran 32.3 27 0.00094 35.1 3.5 54 443-504 188-241 (352)
439 4dbg_B Ring finger protein 31; 30.9 37 0.0013 31.5 3.6 36 139-174 15-64 (162)
440 3ory_A Flap endonuclease 1; hy 30.4 1.4E+02 0.0049 30.7 8.6 64 9-72 258-341 (363)
441 4egf_A L-xylulose reductase; s 30.1 92 0.0031 29.8 6.7 67 458-527 37-105 (266)
442 3llv_A Exopolyphosphatase-rela 30.0 72 0.0025 27.1 5.4 65 451-529 11-79 (141)
443 3f1l_A Uncharacterized oxidore 29.3 1.1E+02 0.0039 28.8 7.2 67 458-527 29-99 (252)
444 3lf2_A Short chain oxidoreduct 29.1 98 0.0033 29.5 6.7 68 458-528 25-95 (265)
445 1q02_A Sequestosome 1; helical 29.1 33 0.0011 26.0 2.5 33 50-83 13-47 (52)
446 3o26_A Salutaridine reductase; 28.5 1.1E+02 0.0037 29.3 7.0 75 451-528 18-99 (311)
447 3i1j_A Oxidoreductase, short c 28.1 1.4E+02 0.0046 27.8 7.4 74 451-527 20-101 (247)
448 4fgs_A Probable dehydrogenase 27.9 1.1E+02 0.0037 30.2 6.9 64 457-527 45-110 (273)
449 3q8k_A Flap endonuclease 1; he 27.8 1.1E+02 0.0038 31.3 7.2 62 9-72 239-328 (341)
450 3fwz_A Inner membrane protein 27.4 76 0.0026 27.3 5.1 66 450-529 11-80 (140)
451 4b79_A PA4098, probable short- 27.0 24 0.00083 34.5 1.9 58 457-526 27-84 (242)
452 3nyw_A Putative oxidoreductase 26.4 1.2E+02 0.0041 28.7 6.8 67 458-527 24-94 (250)
453 2w84_A Peroxisomal membrane pr 25.7 1.2E+02 0.0041 24.3 5.3 33 43-75 31-63 (70)
454 3rih_A Short chain dehydrogena 25.3 74 0.0025 31.3 5.2 67 458-527 58-126 (293)
455 3v2h_A D-beta-hydroxybutyrate 24.7 1.4E+02 0.0048 28.8 7.1 67 458-527 42-111 (281)
456 3ucx_A Short chain dehydrogena 24.7 1.7E+02 0.0057 27.8 7.5 67 457-527 27-95 (264)
457 2px2_A Genome polyprotein [con 24.5 38 0.0013 33.9 2.8 68 440-528 70-147 (269)
458 2ld4_A Anamorsin; methyltransf 24.0 44 0.0015 29.5 3.0 61 442-528 11-71 (176)
459 4fc7_A Peroxisomal 2,4-dienoyl 23.5 1.1E+02 0.0037 29.5 5.9 74 451-527 33-112 (277)
460 3t4x_A Oxidoreductase, short c 22.8 1.6E+02 0.0054 28.1 6.9 65 458-527 27-92 (267)
461 4dry_A 3-oxoacyl-[acyl-carrier 22.7 1.2E+02 0.0041 29.4 6.0 74 451-527 39-118 (281)
462 2o71_A Death domain-containing 22.4 80 0.0028 27.3 4.2 60 7-66 44-103 (115)
463 4gkb_A 3-oxoacyl-[acyl-carrier 22.2 67 0.0023 31.3 4.1 71 452-527 17-90 (258)
464 3nrc_A Enoyl-[acyl-carrier-pro 22.1 1.4E+02 0.0049 28.6 6.4 70 451-528 37-111 (280)
465 3lst_A CALO1 methyltransferase 22.0 65 0.0022 32.3 4.0 36 442-478 183-218 (348)
466 1e7w_A Pteridine reductase; di 22.0 1.8E+02 0.0061 28.1 7.2 66 459-527 27-112 (291)
467 3gvc_A Oxidoreductase, probabl 21.8 1.8E+02 0.0063 28.0 7.2 64 457-527 45-110 (277)
468 3gaf_A 7-alpha-hydroxysteroid 21.7 1.4E+02 0.0049 28.2 6.3 66 458-527 29-96 (256)
469 3k31_A Enoyl-(acyl-carrier-pro 21.6 1.3E+02 0.0045 29.2 6.2 66 457-527 48-115 (296)
470 2py6_A Methyltransferase FKBM; 21.6 99 0.0034 32.2 5.5 49 442-490 225-274 (409)
471 3dii_A Short-chain dehydrogena 21.6 1.4E+02 0.0047 28.1 6.1 62 458-527 19-82 (247)
472 1zg3_A Isoflavanone 4'-O-methy 21.4 54 0.0018 33.0 3.3 70 443-531 193-262 (358)
473 3gcz_A Polyprotein; flavivirus 21.2 48 0.0017 33.4 2.8 35 442-478 89-124 (282)
474 1xu9_A Corticosteroid 11-beta- 21.1 1.6E+02 0.0055 28.2 6.6 73 451-526 34-112 (286)
475 1wxp_A THO complex subunit 1; 20.8 3.1E+02 0.011 23.0 7.6 63 7-87 38-100 (110)
476 3sju_A Keto reductase; short-c 20.8 1.7E+02 0.0058 28.1 6.7 66 458-527 41-108 (279)
477 4ibo_A Gluconate dehydrogenase 20.5 1.9E+02 0.0066 27.7 7.0 67 457-527 42-110 (271)
478 3ftp_A 3-oxoacyl-[acyl-carrier 20.4 1.8E+02 0.0061 27.9 6.8 66 458-527 45-112 (270)
479 4a6d_A Hydroxyindole O-methylt 20.3 1.3E+02 0.0043 30.4 5.8 58 444-503 180-237 (353)
480 3tox_A Short chain dehydrogena 20.0 1.7E+02 0.0058 28.3 6.5 66 458-527 25-92 (280)
481 2cp9_A EF-TS, EF-TSMT, elongat 20.0 1.6E+02 0.0055 23.0 5.0 36 49-85 11-47 (64)
No 1
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=99.91 E-value=3e-25 Score=228.93 Aligned_cols=106 Identities=24% Similarity=0.483 Sum_probs=96.0
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLV 524 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dll 524 (569)
|+|+||||||||+++||+++|+ ++|+|+|+++.|+++|+.| ++. .++.+||++++.+.+ +++|+|
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N-----~~~-~~~~~DI~~i~~~~~-------~~~D~l 65 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESN-----HSA-KLIKGDISKISSDEF-------PKCDGI 65 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHH-----CCS-EEEESCGGGCCGGGS-------CCCSEE
T ss_pred CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHH-----CCC-CcccCChhhCCHhhC-------CcccEE
Confidence 5799999999999999999998 6899999999999999976 443 478899999987654 589999
Q ss_pred EEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 525 IGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 525 iGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+||||||+||.||+ ++|++|+|+.||++|+|+|+.+||++.
T Consensus 66 ~ggpPCQ~fS~ag~--~~g~~d~R~~L~~~~~r~i~~~~Pk~~ 106 (331)
T 3ubt_Y 66 IGGPPSQSWSEGGS--LRGIDDPRGKLFYEYIRILKQKKPIFF 106 (331)
T ss_dssp ECCCCGGGTEETTE--ECCTTCGGGHHHHHHHHHHHHHCCSEE
T ss_pred EecCCCCCcCCCCC--ccCCCCchhHHHHHHHHHHhccCCeEE
Confidence 99999999999996 678999999999999999999999973
No 2
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.91 E-value=2.9e-24 Score=220.96 Aligned_cols=117 Identities=32% Similarity=0.602 Sum_probs=103.9
Q ss_pred ccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhcc
Q 008350 439 EMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 439 ~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.....+++++|||||+||+++||+++|+++++|+++|+++.|+++|+.| +++..++.+||++++.+.+++ .
T Consensus 11 ~~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N-----~~~~~~~~~DI~~i~~~~i~~----~ 81 (295)
T 2qrv_A 11 AEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVRSVTQKHIQE----W 81 (295)
T ss_dssp CCCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH-----TTTCEEEECCGGGCCHHHHHH----T
T ss_pred cccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh-----CCCCceeCCChHHccHHHhcc----c
Confidence 3445789999999999999999999999866699999999999999975 556667899999999877763 3
Q ss_pred CCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccc
Q 008350 519 GGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNM 565 (569)
Q Consensus 519 g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk 565 (569)
+++|+|+||||||+||.||+ +++|++|+|+.||++|+|+|+.+||+
T Consensus 82 ~~~Dll~ggpPCQ~fS~ag~-~r~g~~d~r~~L~~~~~rii~~~~P~ 127 (295)
T 2qrv_A 82 GPFDLVIGGSPCNDLSIVNP-ARKGLYEGTGRLFFEFYRLLHDARPK 127 (295)
T ss_dssp CCCSEEEECCCCGGGBTTCT-TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred CCcCEEEecCCCccccccCc-cccccccccchhHHHHHHHHHHhCcc
Confidence 68999999999999999994 36789999999999999999999998
No 3
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=99.89 E-value=1.6e-23 Score=218.72 Aligned_cols=112 Identities=23% Similarity=0.319 Sum_probs=100.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
++++++|||||+||+++||+++|+.+++|+++|+++.|+++|+.| ++++.++.+||++++.+.++. .++|
T Consensus 2 m~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N-----~~~~~~~~~DI~~~~~~~~~~-----~~~D 71 (333)
T 4h0n_A 2 MSHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN-----FPETNLLNRNIQQLTPQVIKK-----WNVD 71 (333)
T ss_dssp -CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----CTTSCEECCCGGGCCHHHHHH-----TTCC
T ss_pred CCCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh-----CCCCceeccccccCCHHHhcc-----CCCC
Confidence 368899999999999999999999778999999999999999975 556667889999999887764 3799
Q ss_pred EEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhc-ccc
Q 008350 523 LVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVK-NMM 566 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vr-Pk~ 566 (569)
+|+||||||+||.||+ ++|.+|+|+.||++|+|+|+.++ |++
T Consensus 72 ~l~ggpPCQ~fS~ag~--~~~~~d~r~~L~~~~~r~i~~~~~P~~ 114 (333)
T 4h0n_A 72 TILMSPPCQPFTRNGK--YLDDNDPRTNSFLYLIGILDQLDNVDY 114 (333)
T ss_dssp EEEECCCCCCSEETTE--ECCTTCTTSCCHHHHHHHGGGCTTCCE
T ss_pred EEEecCCCcchhhhhh--ccCCcCcccccHHHHHHHHHHhcCCCE
Confidence 9999999999999996 67889999999999999999997 986
No 4
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=99.88 E-value=5e-23 Score=214.52 Aligned_cols=115 Identities=20% Similarity=0.404 Sum_probs=100.8
Q ss_pred ccCCCCcceeccccChhHHHHHHHHcCCceeEE-EeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 439 EMYPDGINVLSLFSGIGGAEVALHRLGVRMKNV-VSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 439 ~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V-~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
.+..++++++|||||+||+++||+++|+++++| +++|+++.|+++|+.|+ +++ ++.+||++++.+.++.
T Consensus 5 ~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~-----~~~-~~~~DI~~~~~~~i~~---- 74 (327)
T 3qv2_A 5 SMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF-----KEE-VQVKNLDSISIKQIES---- 74 (327)
T ss_dssp ---CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH-----CCC-CBCCCTTTCCHHHHHH----
T ss_pred cccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC-----CCC-cccCChhhcCHHHhcc----
Confidence 444568999999999999999999999866899 99999999999999875 333 6789999999887764
Q ss_pred cCCeeEEEEcCCCCcc--ccCCCCCCCCCCCCccchHHHHHH-HHHHh--cccc
Q 008350 518 FGGFDLVIGGSPCNNL--AGSNRHSRDGLEGKESSLFYDYFR-ILDLV--KNMM 566 (569)
Q Consensus 518 ~g~~DlliGGpPCQ~f--S~ag~~kr~Gl~d~r~~Lf~~~~r-II~~v--rPk~ 566 (569)
.++|+|+||||||+| |.+|+ ++|.+|+|+.||++++| +|+.+ ||++
T Consensus 75 -~~~Dil~ggpPCQ~fs~S~ag~--~~~~~d~r~~L~~~~~r~~i~~~~~~P~~ 125 (327)
T 3qv2_A 75 -LNCNTWFMSPPCQPYNNSIMSK--HKDINDPRAKSVLHLYRDILPYLINKPKH 125 (327)
T ss_dssp -TCCCEEEECCCCTTCSHHHHTT--TCTTTCGGGHHHHHHHHTTGGGCSSCCSE
T ss_pred -CCCCEEEecCCccCcccccCCC--CCCCccccchhHHHHHHHHHHHhccCCCE
Confidence 379999999999999 99996 67889999999999999 99999 8986
No 5
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=99.87 E-value=9.3e-23 Score=216.22 Aligned_cols=114 Identities=24% Similarity=0.427 Sum_probs=94.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+++++|||||+||+++||+++|+ ++|++||+++.|+++|+.| ++++.++++||++++.+.+.......+++|+
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N-----~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAIN-----FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHH-----CTTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHh-----CCCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 57899999999999999999997 6899999999999999975 5667788999999998766432212368999
Q ss_pred EEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 524 VIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 524 liGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
|+||||||+||.+|+ + +.+|+|+.||++|+|+|+.+||++.
T Consensus 75 i~ggpPCQ~fS~ag~--~-~~~d~r~~L~~~~~~~v~~~~P~~~ 115 (376)
T 3g7u_A 75 IIGGPPCQGFSSIGK--G-NPDDSRNQLYMHFYRLVSELQPLFF 115 (376)
T ss_dssp EEECCCCCTTC----------CHHHHHHHHHHHHHHHHHCCSEE
T ss_pred EEecCCCCCcccccC--C-CCCCchHHHHHHHHHHHHHhCCCEE
Confidence 999999999999996 3 7889999999999999999999973
No 6
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=99.86 E-value=1.7e-22 Score=211.50 Aligned_cols=111 Identities=19% Similarity=0.381 Sum_probs=82.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+++|+|||||+||+++||+++|+++++|+++|+++.|+++|+.| ++++.++++||+++..+.+.. ..+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N-----~~~~~~~~~Di~~~~~~~~~~-----~~~D~ 71 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-----FPHTQLLAKTIEGITLEEFDR-----LSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----CTTSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh-----ccccccccCCHHHccHhHcCc-----CCcCE
Confidence 57899999999999999999997778999999999999999976 445557899999998766653 26999
Q ss_pred EEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhc--ccc
Q 008350 524 VIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVK--NMM 566 (569)
Q Consensus 524 liGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vr--Pk~ 566 (569)
|+||||||+||.||+ ++|++|+|+.||++|+|+|+.++ |++
T Consensus 72 l~~gpPCq~fS~ag~--~~g~~d~r~~l~~~~~~~i~~~~~~P~~ 114 (343)
T 1g55_A 72 ILMSPPCQPFTRIGR--QGDMTDSRTNSFLHILDILPRLQKLPKY 114 (343)
T ss_dssp EEECCC--------------------CHHHHHHHHGGGCSSCCSE
T ss_pred EEEcCCCcchhhcCC--cCCccCccchHHHHHHHHHHHhcCCCCE
Confidence 999999999999996 66889999999999999999999 986
No 7
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=99.86 E-value=2.4e-22 Score=209.27 Aligned_cols=106 Identities=25% Similarity=0.487 Sum_probs=94.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+++++|||||+||+++||+++|+ ++++++|+++.|+++|+.|+. ... ++||+++..+.+ +++|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~-----~~~--~~Di~~~~~~~~-------~~~D 73 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFG-----EKP--EGDITQVNEKTI-------PDHD 73 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHS-----CCC--BSCGGGSCGGGS-------CCCS
T ss_pred CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcC-----CCC--cCCHHHcCHhhC-------CCCC
Confidence 468999999999999999999997 689999999999999998753 222 799999986544 4799
Q ss_pred EEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhcccc
Q 008350 523 LVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMM 566 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~ 566 (569)
+|+||||||+||.||+ ++|++|+|+.||++|+|+|+.+||++
T Consensus 74 ~l~~gpPCQ~fS~ag~--~~g~~d~r~~L~~~~~r~i~~~~P~~ 115 (327)
T 2c7p_A 74 ILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREKKPKV 115 (327)
T ss_dssp EEEEECCCTTTCTTSC--CCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred EEEECCCCCCcchhcc--cCCCcchhhHHHHHHHHHHHhccCcE
Confidence 9999999999999996 67889999999999999999999986
No 8
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=99.86 E-value=2.5e-22 Score=218.96 Aligned_cols=121 Identities=19% Similarity=0.355 Sum_probs=91.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhh--------H-HH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANR--------I-EQ 513 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~--------l-~~ 513 (569)
..++++||||||||+++||+++|+ ++|+++|+++.|+++|+.||. +.|+..++++||++++... + ..
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHY--CDPATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSC--CCTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred ccceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhcc--cCCCcceeccchhhhhhccccccchhhHHhh
Confidence 469999999999999999999997 689999999999999998752 2356667889999886321 1 11
Q ss_pred HHhccCCeeEEEEcCCCCccccCCCCC------CCCCC-CCccchHHHHHHHHHHhccccc
Q 008350 514 MINAFGGFDLVIGGSPCNNLAGSNRHS------RDGLE-GKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 514 ~~~~~g~~DlliGGpPCQ~fS~ag~~k------r~Gl~-d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+....+++|||+||||||+||.||+.+ +.|+. |+|+.||++|+|+|+.+||++.
T Consensus 163 i~~~~~~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~f 223 (482)
T 3me5_A 163 IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMF 223 (482)
T ss_dssp HHHHSCCCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCSEE
T ss_pred hhhcCCCCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCcEE
Confidence 112357899999999999999999643 23554 7999999999999999999873
No 9
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=99.86 E-value=2.3e-22 Score=230.70 Aligned_cols=121 Identities=21% Similarity=0.356 Sum_probs=99.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCC----ceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHH----
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGV----RMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQ---- 513 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi----~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~---- 513 (569)
.++++||||||||||+++||+++|. .+++++|||+|+.|++||+. |||++.++++||.++....+..
T Consensus 210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~-----Nhp~~~~~~~di~~i~~~~~~~~~~~ 284 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKY-----NHPQTEVRNEKADEFLALLKEWAVLC 284 (784)
T ss_dssp CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHH-----HCTTSEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHH-----HCCCCceecCcHHHhhhhhhhccccc
Confidence 4579999999999999999999982 25799999999999999996 4788888899998765332211
Q ss_pred --------------------------------------------------------------------------------
Q 008350 514 -------------------------------------------------------------------------------- 513 (569)
Q Consensus 514 -------------------------------------------------------------------------------- 513 (569)
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~ 364 (784)
T 4ft4_B 285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF 364 (784)
T ss_dssp HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence
Q ss_pred --------HHhccCCeeEEEEcCCCCccccCCCCCC--CCCCCCccchHHHHHHHHHHhccccc
Q 008350 514 --------MINAFGGFDLVIGGSPCNNLAGSNRHSR--DGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 514 --------~~~~~g~~DlliGGpPCQ~fS~ag~~kr--~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
.+...|++|||+||||||+||.||+++. .+++|+||.||++|+|+|+.+||++.
T Consensus 365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~kg~~~~~~D~R~~L~~~~~riv~~~rPk~f 428 (784)
T 4ft4_B 365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYV 428 (784)
T ss_dssp HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGSCTTSTTTSTTCHHHHHHHHHHHHHCCSEE
T ss_pred ccccchhhccCCCCCeEEEEecCCCcchhhhhcccCcCccccCchhHHHHHHHHHHHHHCCCEE
Confidence 0112367999999999999999997432 34789999999999999999999973
No 10
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=99.85 E-value=2.1e-22 Score=234.70 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=155.0
Q ss_pred cccccccCCCCCCCCCCCCcccHHhhchhhhccCCCCCcc-------CCcccceeec--cchhHHHHHHhhhhccCCCCC
Q 008350 292 RGYVHNLPIKNRHHLVPLPPQNIYEALPLSRKWWPSWDTR-------SHLNCLQTCI--ASAKLTERIRKALEECDGEPE 362 (569)
Q Consensus 292 rgyihnlp~~~r~~~~p~~p~tI~ealp~~r~~~p~~d~r-------~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~ 362 (569)
.|||-+|-+..+.+-.+.+ ..+ .+...+.|+|+..++ .+.+.|+++. ....+..+.++|...+..+
T Consensus 395 IgrI~~i~~~~~~~~~~~~-~~~--~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d-- 469 (1002)
T 3swr_A 395 IGRIKEIFCPKKSNGRPNE-TDI--KIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGED-- 469 (1002)
T ss_dssp EEEEEEEEECCCSSSSCCS-SCC--EEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGG--
T ss_pred eeEEeEEEecCCccccCCC-ccE--EEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEecc--
Confidence 5777777665554422222 222 566677888874322 3567788874 6677788888888887765
Q ss_pred CCccchhHHHhhhcccceeeeccCccccCCc-ccceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccC
Q 008350 363 PPHHVQKFVMDECRKWNLVWVGRNKLAPLEP-DEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMY 441 (569)
Q Consensus 363 ~~~~vq~~il~~ck~~nlvwvg~~~~~~l~~-~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~ 441 (569)
++...+.++.. |++.+..... ++....|-.|+++++......+.+.+..+..... ..-.........
T Consensus 470 ~~~~~~~~~~~----------~p~~fyf~~~Yd~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 537 (1002)
T 3swr_A 470 LPECVQVYSMG----------GPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQ--ACEPSEPEIEIK 537 (1002)
T ss_dssp CSSCHHHHHHT----------SSSEEEEEEEEETTTTEEECCCSTTSCC------------------------CCCCCCC
T ss_pred ccccchhhccC----------CCCeEEEEEEEeCCCCeeecCcccccccccccccccccccccccc--cccccccccccc
Confidence 55555555541 1111111111 2222333334555554333333222222211110 000000001122
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHH-------
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQM------- 514 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~------- 514 (569)
..+++++|||||+||+++||+++|+. ++++|+|+++.|+++|+.| +|++.++.+||.++....+..-
T Consensus 538 ~~~l~~iDLFaG~GGlslGl~~AG~~-~vv~avEid~~A~~ty~~N-----~p~~~~~~~DI~~l~~~~~~~di~~~~~~ 611 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLSEGFHQAGIS-DTLWAIEMWDPAAQAFRLN-----NPGSTVFTEDCNILLKLVMAGETTNSRGQ 611 (1002)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHTSE-EEEEEECSSHHHHHHHHHH-----CTTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred CCCCeEEEeccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHh-----CCCCccccccHHHHhhhccchhhhhhhhh
Confidence 35799999999999999999999983 6899999999999999965 6777788899887642211100
Q ss_pred -HhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 515 -INAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 515 -~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+...+++|||+||||||+||.+|+.+.++.+|+|+.||++|+|+|+.+||++.
T Consensus 612 ~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~L~~~~~riv~~~rPk~~ 665 (1002)
T 3swr_A 612 RLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFF 665 (1002)
T ss_dssp BCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTSHHHHHHHHHHHHCCSEE
T ss_pred hcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhHHHHHHHHHHHHhCCCEE
Confidence 01125799999999999999999743345678999999999999999999873
No 11
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=99.83 E-value=2.3e-21 Score=207.14 Aligned_cols=116 Identities=17% Similarity=0.241 Sum_probs=95.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeE----EEeeccCHHHHHHHHHHHhhcCCC---------------Ccc------
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKN----VVSVDISEVNRNIVRSWWEQTNQK---------------GTL------ 497 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~----V~avEid~~A~~t~~~n~~~~N~~---------------~~~------ 497 (569)
..++|+||||||||+++||+++|+++++ |+++|+++.|+++|+.|+...-.. +..
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~ 88 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG 88 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence 4699999999999999999999965455 999999999999999987532000 000
Q ss_pred --------------------cccccccccchhhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCC---CccchHHH
Q 008350 498 --------------------IDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEG---KESSLFYD 554 (569)
Q Consensus 498 --------------------~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d---~r~~Lf~~ 554 (569)
...+||++++...++ +.+|+|+||||||+||.||+ ++|++| +|+.||++
T Consensus 89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~ag~--~~g~~d~~~~r~~L~~~ 160 (403)
T 4dkj_A 89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQGL--QKGIDKELNTRSGLLWE 160 (403)
T ss_dssp HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTTSC--CCCCCGGGCCSGGGHHH
T ss_pred cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHhCC--CCCCCccccccchhHHH
Confidence 034888888876654 46899999999999999996 668876 99999999
Q ss_pred HHHHHHH--------hcccc
Q 008350 555 YFRILDL--------VKNMM 566 (569)
Q Consensus 555 ~~rII~~--------vrPk~ 566 (569)
|+|+|+. +||++
T Consensus 161 ~~rii~~~~~k~~~~~~Pk~ 180 (403)
T 4dkj_A 161 IERILEEIKNSFSKEEMPKY 180 (403)
T ss_dssp HHHHHHHHHHHSCGGGSCSE
T ss_pred HHHHHHHhhhhhccccCCCE
Confidence 9999998 89986
No 12
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=99.78 E-value=4.8e-20 Score=219.66 Aligned_cols=119 Identities=21% Similarity=0.381 Sum_probs=96.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHH--------HH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIE--------QM 514 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~--------~~ 514 (569)
.+++++||||||||+++||+++|+. ++++|+|+++.|+++|+.| ++++.++.+||.++....+. ..
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~-~vv~avEid~~A~~ty~~N-----~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGIS-ETLWAIEMWDPAAQAFRLN-----NPGTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSE-EEEEEECCSHHHHHHHHHH-----CTTSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CCceEEecccCccHHHHHHHHCCCC-ceEEEEECCHHHHHHHHHh-----CCCCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 5799999999999999999999973 6899999999999999975 56666778888766432110 00
Q ss_pred HhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhccccc
Q 008350 515 INAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 567 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~~ 567 (569)
+...+++|||+||||||+||.+|+.+.++.+|+|+.||++|+|+|+.+||++.
T Consensus 924 lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lriv~~~rPk~f 976 (1330)
T 3av4_A 924 LPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFF 976 (1330)
T ss_dssp CCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHHHHHHHCCSEE
T ss_pred ccccCccceEEecCCCcccccccccccccccchhhHHHHHHHHHHHHhcCcEE
Confidence 11125799999999999999999743345678999999999999999999873
No 13
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.75 E-value=1.1e-19 Score=191.02 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=115.2
Q ss_pred hhcccceeeeccCccccCCc-ccceeeccCCCCccccCCcccceeeccccccccccch----hhhhhhhhccCCCCccee
Q 008350 374 ECRKWNLVWVGRNKLAPLEP-DEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVL 448 (569)
Q Consensus 374 ~ck~~nlvwvg~~~~~~l~~-~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vl 448 (569)
+|+.+-..++|+..+..+.. +.|.++.+.|.. .......+..|...+..||..+.. .|. .......++++++
T Consensus 117 FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p-~~~ll~~r~~w~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~ikvi 193 (386)
T 2pv0_B 117 YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS-RSGLLQRRRKWRSQLKAFYDRESENPLEMFE--TVPVWRRQPVRVL 193 (386)
T ss_dssp ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC-EETTEEBCSSHHHHHHHHHHHHCSSCCCCCC--CCCGGGCCCCCEE
T ss_pred hHHHHHHHhcChhHHHHhhccCCceEEEcCCcc-hHhhhhhhhhHHHHHHHHHhhcccCchhhcc--ccchhhhcCceee
Confidence 45566666778887754444 799999998886 333345677888888878855432 111 1111223569999
Q ss_pred ccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcC
Q 008350 449 SLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 449 DLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGp 528 (569)
|||||+|| ||+++||++ ..|+++..++.+||++++.+.+++ ++++|||+|||
T Consensus 194 dLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~~DlliGG~ 245 (386)
T 2pv0_B 194 SLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGPFDLVYGAT 245 (386)
T ss_dssp EESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCCCSEEEEEC
T ss_pred EEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCCCCEEEECC
Confidence 99999997 999999862 147777767889999999877763 47899999999
Q ss_pred CCCccccCCCCCCCCCCCCccchHHHHHHHHHHhcccc
Q 008350 529 PCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMM 566 (569)
Q Consensus 529 PCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~ 566 (569)
|||+||.|+ +|+.||++|+|||+.+||+.
T Consensus 246 PCQ~FS~A~---------~Rg~Lf~ef~Riv~~~rPk~ 274 (386)
T 2pv0_B 246 PPLGHTCDR---------PPSWYLFQFHRLLQYARPKP 274 (386)
T ss_dssp CCTTTCSCS---------CTHHHHHHHHHHHHHHSCCS
T ss_pred CCCcccccC---------CcchHHHHHHHHHHHhCCCc
Confidence 999999985 47899999999999999983
No 14
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=170.28 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=72.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
++++++|||||+|| ||+++|++. + .|+++..++.+||++++.+.+++ ++++|
T Consensus 32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D 83 (230)
T 2qrv_B 32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD 83 (230)
T ss_dssp CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence 46899999999998 899999862 1 35666667889999999877764 47899
Q ss_pred EEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHHhcccc
Q 008350 523 LVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMM 566 (569)
Q Consensus 523 lliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~vrPk~ 566 (569)
||+||||||+||.+| +|++||++|+|||+.+||++
T Consensus 84 lliGG~PCQ~FS~ag---------~rg~Lf~ef~Riv~~~rPk~ 118 (230)
T 2qrv_B 84 LVYGATPPLGHTCDR---------PPSWYLFQFHRLLQYARPKP 118 (230)
T ss_dssp EEEEECCCTTTSSCS---------CTHHHHHHHHHHHHHHCCCS
T ss_pred EEEECCCCCcccccC---------CCchHHHHHHHHHHHHCcCc
Confidence 999999999999987 37899999999999999984
No 15
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.39 E-value=3.7e-13 Score=120.56 Aligned_cols=87 Identities=26% Similarity=0.481 Sum_probs=72.1
Q ss_pred CccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCC--------------Chh------HHHHHHHhCCCC
Q 008350 1 MIDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASS--------------SKS------KLIDHFVGMGFS 60 (569)
Q Consensus 1 ~~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~s--------------s~~------~~~~~~~~MGF~ 60 (569)
++.+|++||||+++|.||++.+|. |.++++|+|+.++.+..++- +.+ .++..|++|||+
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~ 89 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFE 89 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCC
Confidence 367899999999999999999999 99999999999975432211 121 348899999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhhh
Q 008350 61 VDMVAKAIQENGEENTDSILETLLTYSAL 89 (569)
Q Consensus 61 ~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~ 89 (569)
++.|.+|+..++. |.|+.||.|++...+
T Consensus 90 ~~~a~~AL~~~~n-d~erAlewL~~~~~~ 117 (118)
T 4ae4_A 90 LKDIKEVLLLHNN-DQDNALEDLMARAGA 117 (118)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHhccc
Confidence 9999999999997 569999999986543
No 16
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.16 E-value=4.1e-11 Score=107.29 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFE 123 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 123 (569)
++|..+++.+|+.||||+..|.||++.+|. +++++++.|++++.+.+.+-++...+ .-+. ... .
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~~e----------~~l~-~~~----~ 68 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLLVE----------EALE-MHQ----C 68 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHHHH----------HHHH-HCS----S
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhhhH----------HHHH-hcc----C
Confidence 456778999999999999999999999999 89999999999987765433221000 0000 000 0
Q ss_pred CcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008350 124 GEEITNPDPDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICA 173 (569)
Q Consensus 124 ~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~a 173 (569)
++.- ..+.-.++..|..|||+++.|..|+.+++.| ++-=+|.+++
T Consensus 69 ~~~~---~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~ 113 (118)
T 4ae4_A 69 SEEK---MMEFLQLMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMA 113 (118)
T ss_dssp CHHH---HHHHHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred Cccc---cccCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence 0000 1112356899999999999999999999997 3444555544
No 17
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.95 E-value=1.2e-09 Score=117.49 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=134.5
Q ss_pred CCCCcccHHhhchhhhccC-----CCCCccCCcccceeec--cchhHHHHHHhhhhccCCCCCCCccchhHHHhhhcccc
Q 008350 307 VPLPPQNIYEALPLSRKWW-----PSWDTRSHLNCLQTCI--ASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKWN 379 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~-----p~~d~r~~~n~L~t~~--~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~n 379 (569)
.|+.++.|+++++.++.|. +.|+.+++.+.++++. .+..+.+.+..+++......++ ........
T Consensus 157 C~i~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~g~lr~~~vr~~~~~g~~~v~l~~~~~~~~~l--------~~~~~~~~ 228 (425)
T 2jjq_A 157 CPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKFTEEVMVNFVTKEGNLPDP--------TNYFDFDS 228 (425)
T ss_dssp BTTTBHHHHHHHHHHHHHHHHHTCCBBBTTTTBCSEEEEEEEECTTTCCEEEEEEESSSCCCCC--------TTTCCCSE
T ss_pred CccCCHHHHHHHHHHHHHHHHcCCCccccccCCCcceEEEEEEccCCCCEEEEEEeCchhHHHH--------hhcCCeeE
Confidence 7888999999999888764 4578889999888886 2323445555444332211001 11223334
Q ss_pred eeee-ccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccchh----hhhhhhhccCCCCcceeccccCh
Q 008350 380 LVWV-GRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVA----YHLSVLKEMYPDGINVLSLFSGI 454 (569)
Q Consensus 380 lvwv-g~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~----~~ls~lk~~~~~~i~vlDLFSGi 454 (569)
+++. +......+.+ +.+.+.| ..++.......+.++.+.+ |||+|... +... .. ...+-+|+|||||.
T Consensus 229 i~~~~~~~~~~~~~g-~~~~l~G--~~~i~e~~~g~~f~~~~~~-F~q~n~~~~e~l~~~~--~~-~~~~~~VLDlgcG~ 301 (425)
T 2jjq_A 229 IYWSVNRSKSDVSYG-DIERFWG--KEFIRERLDDVDYLIHPNS-FFQTNSYQAVNLVRKV--SE-LVEGEKILDMYSGV 301 (425)
T ss_dssp EEEEECCSSSCCSCC-EEEEEEE--CSCEEEEETTEEEEECTTS-CCCSBHHHHHHHHHHH--HH-HCCSSEEEEETCTT
T ss_pred EEEEcCCCCCceecc-eEEEEEC--CCeEEEEECCEEEEEcccc-ccccCHHHHHHHHHHh--hc-cCCCCEEEEeeccc
Confidence 4443 3333344555 6777888 4455555567788888877 99987542 2221 11 34567899999999
Q ss_pred hHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCCC
Q 008350 455 GGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 455 GG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
|++++.+.+.+. .|+++|+++.+++.++.|...++.. ..++.+|+.++... .+|+|+..||..
T Consensus 302 G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 302 GTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GFDTVIVDPPRA 364 (425)
T ss_dssp THHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TCSEEEECCCTT
T ss_pred hHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CCCEEEEcCCcc
Confidence 999999998863 6999999999999999888766655 77889999887532 589999999964
No 18
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.89 E-value=3.7e-09 Score=95.46 Aligned_cols=83 Identities=18% Similarity=0.386 Sum_probs=70.0
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccccc-------------CC--CC-----------ChhHHHHHHH
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASS-------------SA--SS-----------SKSKLIDHFV 55 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~-------------~~--~s-----------s~~~~~~~~~ 55 (569)
+.++++||||++.+.||+...|..|.+.-++.|+...... .. ++ .....+..|+
T Consensus 7 l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~epl~~~~~~s~~~~~~~~l~~~~~~~~~~e~~v~~L~ 86 (126)
T 2lbc_A 7 VMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFAEPLTMPGYGGAASAGASVFGASGLDNQPPEEIVAIIT 86 (126)
T ss_dssp HHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSSCTTCCSSCCSSSSSCCCCSTTSSCCCCCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccccccccccccccccccccchhhhcccccccCcCHHHHHHHH
Confidence 5789999999999999999999989999999999864411 00 11 3456799999
Q ss_pred hCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 56 GMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 56 ~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.|||+++.|.+|+..+|. +.+..++.|+.
T Consensus 87 ~MGF~~~~a~~AL~~~~~-~~e~A~e~L~~ 115 (126)
T 2lbc_A 87 SMGFQRNQAIQALRATNN-NLERALDWIFS 115 (126)
T ss_dssp HHTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 999999999999999976 78999999995
No 19
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=98.68 E-value=9.2e-09 Score=105.57 Aligned_cols=149 Identities=27% Similarity=0.331 Sum_probs=96.7
Q ss_pred CCeeeEeccccCCCcchHHhhhhcccCCCceechhhcchhhhccccccccCCCCCCCCCCC-CcccHHhhchhhhccCCC
Q 008350 249 PPYFYYENVALAPKGVWDTISRFLYDVEPEFVDSKYFCAAARKRGYVHNLPIKNRHHLVPL-PPQNIYEALPLSRKWWPS 327 (569)
Q Consensus 249 p~~f~~~nv~~~~~~~~~~is~~l~~~~p~~vds~~~sa~~r~rgyihnlp~~~r~~~~p~-~p~tI~ealp~~r~~~p~ 327 (569)
|.||++|||..+-...+.+|.++|. ..+.++|++.|.||+|+|.||.++|...++...++ ...++.+++...+.+
T Consensus 133 P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~~--- 208 (295)
T 2qrv_A 133 PFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIA--- 208 (295)
T ss_dssp CCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCEE---
T ss_pred ccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCccc---
Confidence 3489999999998877788999995 58999999999999999999999886654322111 124555555322110
Q ss_pred CCccCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhcccceeeeccCccccCCcccceeeccCCCCcc
Q 008350 328 WDTRSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKWNLVWVGRNKLAPLEPDEVEMLLGFPKNHT 407 (569)
Q Consensus 328 ~d~r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~nlvwvg~~~~~~l~~~e~E~l~GfP~~~t 407 (569)
. .+..+++.... . .+ ..++. + ++..+++++.+.|++.|+.+|+|||++|+
T Consensus 209 --~---~~~~~~i~~~~------~-~~-~~g~~---------------~--~~~~~~~~~~R~lt~rE~arlqgFPd~~~ 258 (295)
T 2qrv_A 209 --K---FSKVRTITTRS------N-SI-KQGKD---------------Q--HFPVFMNEKEDILWCTEMERVFGFPVHYT 258 (295)
T ss_dssp --S---SSSBC-------------------------------------C--CSCEEETTEEECCCHHHHHHHHTCCTTTT
T ss_pred --c---cCccccccCCC------c-ee-cCCCC---------------C--CcccccCCCcCCCCHHHHHHHcCCCHHHe
Confidence 0 11111111000 0 00 00100 0 00113355678999999999999999999
Q ss_pred ccCCcccceeeccccccccccchh
Q 008350 408 RGGGISRTDRYKSLGNSFQVDTVA 431 (569)
Q Consensus 408 ~~~~~s~t~R~k~lgn~fqvnt~~ 431 (569)
.....+.+.+++++||++.+....
T Consensus 259 ~~~~~s~~~~~~qiGNaVpv~~~~ 282 (295)
T 2qrv_A 259 DVSNMSRLARQRLLGRSWSVPVIR 282 (295)
T ss_dssp CCTTCCHHHHHHHHHTSCCHHHHH
T ss_pred eCCCcCHHHHhccEecCcCHHHHH
Confidence 876667799999999999987543
No 20
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.67 E-value=8.3e-08 Score=101.48 Aligned_cols=131 Identities=19% Similarity=0.051 Sum_probs=93.1
Q ss_pred cceeeccCCC-CccccCCcccceeeccc-----cccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCce
Q 008350 395 EVEMLLGFPK-NHTRGGGISRTDRYKSL-----GNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRM 468 (569)
Q Consensus 395 e~E~l~GfP~-~~t~~~~~s~t~R~k~l-----gn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~ 468 (569)
+.+.+.|.++ .++.......++++... + +||.+...+.. +... ..+-+|||+|||+|++++.+.+.|.
T Consensus 170 ~~~~l~G~~~~~~~~~~~~g~~f~v~~~~~~~tg-ff~~~~~~~~~--l~~~-~~~~~VLDl~cG~G~~sl~la~~g~-- 243 (396)
T 3c0k_A 170 TQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTG-YYLDQRDSRLA--TRRY-VENKRVLNCFSYTGGFAVSALMGGC-- 243 (396)
T ss_dssp EEEEEESCCCCSSEEEEETTEEEEECTTTSSTTS-SCGGGHHHHHH--HHHH-CTTCEEEEESCTTCSHHHHHHHTTC--
T ss_pred cceeEcCCCCCceEEEEECCEEEEEeccccccCC-cCcCHHHHHHH--HHHh-hCCCeEEEeeccCCHHHHHHHHCCC--
Confidence 4456778654 45655556666777766 5 78765443332 1222 3567899999999999999999874
Q ss_pred eEEEeeccCHHHHHHHHHHHhhcCC-C-CcccccccccccchhhHHHHHhccCCeeEEEEcCCCCcccc
Q 008350 469 KNVVSVDISEVNRNIVRSWWEQTNQ-K-GTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAG 535 (569)
Q Consensus 469 k~V~avEid~~A~~t~~~n~~~~N~-~-~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ 535 (569)
..|+++|+++.+++.++.|...++. . +..++.+|+.++... + ......+|+|+.+||+...|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~-~---~~~~~~fD~Ii~dpP~~~~~~ 308 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-Y---RDRGEKFDVIVMDPPKFVENK 308 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHH-H---HHTTCCEEEEEECCSSTTTCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHH-H---HhcCCCCCEEEECCCCCCCCh
Confidence 4799999999999999998876555 3 566788888776432 1 112257999999999876554
No 21
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=98.55 E-value=2.8e-08 Score=103.58 Aligned_cols=171 Identities=21% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCCeeeEeccccCCCc-chHHhhhhc----ccCCCceechhhc-chhhhcccccc----ccCCC--------CCCCCCCC
Q 008350 248 GPPYFYYENVALAPKG-VWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVH----NLPIK--------NRHHLVPL 309 (569)
Q Consensus 248 ~p~~f~~~nv~~~~~~-~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyih----nlp~~--------~r~~~~p~ 309 (569)
+|.||++|||..+-.+ .|..|-+-| |.++...+|++.| .||+|+|.||= .++.. ..++..+.
T Consensus 111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~ 190 (333)
T 4h0n_A 111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG 190 (333)
T ss_dssp TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence 3999999999988654 477777666 8899999999999 99999999972 22211 01111112
Q ss_pred CcccHHhhchh-----------hhccCCCCCccCCcccce---e------ec--cc------hhHHHHHHhhhhccCCCC
Q 008350 310 PPQNIYEALPL-----------SRKWWPSWDTRSHLNCLQ---T------CI--AS------AKLTERIRKALEECDGEP 361 (569)
Q Consensus 310 ~p~tI~ealp~-----------~r~~~p~~d~r~~~n~L~---t------~~--~s------~~~~e~l~~~~~~~~~~~ 361 (569)
..++|.++|.. +.+||..++..+..+... + .. ++ ......+.+++.....
T Consensus 191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-- 268 (333)
T 4h0n_A 191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-- 268 (333)
T ss_dssp SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT--
T ss_pred ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC--
Confidence 23556665531 112332222111100000 0 00 00 0011122222211110
Q ss_pred CCCccchhHHHhhhcccceeeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccchhhh
Q 008350 362 EPPHHVQKFVMDECRKWNLVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYH 433 (569)
Q Consensus 362 ~~~~~vq~~il~~ck~~nlvwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ 433 (569)
.+ ... +..+++.+.+.|+|.|+++|+|||++|+.....+.+.+++++||++.++.+...
T Consensus 269 -G~---~~~---------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i 327 (333)
T 4h0n_A 269 -GG---EKF---------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISEL 327 (333)
T ss_dssp -TC---HHH---------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHH
T ss_pred -Cc---ccc---------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHH
Confidence 00 011 122356778999999999999999999987778888999999999998765443
No 22
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.52 E-value=2.2e-07 Score=97.46 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=79.6
Q ss_pred ccceeeccccccccccchh----hhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 413 SRTDRYKSLGNSFQVDTVA----YHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 413 s~t~R~k~lgn~fqvnt~~----~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
..+.++.+.+ |||+|... +...... .-..+-+|+|||||+|++++.+.+.+ ..|+++|+++.+++.++.|.
T Consensus 181 ~~~~~~~~~~-F~Q~n~~~~~~l~~~~~~~-~~~~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~ 255 (369)
T 3bt7_A 181 EMIYRQVENS-FTQPNAAMNIQMLEWALDV-TKGSKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNI 255 (369)
T ss_dssp CCEEEEETTS-CCCSBHHHHHHHHHHHHHH-TTTCCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHH
T ss_pred eEEEEECCCC-eecCCHHHHHHHHHHHHHH-hhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHH
Confidence 3667777876 99998762 2211111 11224679999999999999998854 47999999999999999998
Q ss_pred hhcCCCCcccccccccccchhhHHHHHhc------------cCCeeEEEEcCCCCc
Q 008350 489 EQTNQKGTLIDFADVQQLDANRIEQMINA------------FGGFDLVIGGSPCNN 532 (569)
Q Consensus 489 ~~~N~~~~~~~~~DI~~i~~~~l~~~~~~------------~g~~DlliGGpPCQ~ 532 (569)
..++..+..++.+|+.++... +. .. ...+|+|+..||+.+
T Consensus 256 ~~ng~~~v~~~~~d~~~~~~~-~~---~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g 307 (369)
T 3bt7_A 256 AANHIDNVQIIRMAAEEFTQA-MN---GVREFNRLQGIDLKSYQCETIFVDPPRSG 307 (369)
T ss_dssp HHTTCCSEEEECCCSHHHHHH-HS---SCCCCTTGGGSCGGGCCEEEEEECCCTTC
T ss_pred HHcCCCceEEEECCHHHHHHH-Hh---hccccccccccccccCCCCEEEECcCccc
Confidence 766666677888998765421 11 00 026999999999875
No 23
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.51 E-value=4.6e-07 Score=81.71 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEI 127 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~ 127 (569)
...+.+|+.||||+..+.+|+..+|..+++..++.|+..+.-.... + +..-+ .+.... ..+ +..
T Consensus 4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~di~---e---pl~~~-~~~s~~--------~~~-~~~ 67 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEPDFA---E---PLTMP-GYGGAA--------SAG-ASV 67 (126)
T ss_dssp THHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCSSSS---C---TTCCS-SCCSSS--------SSC-CCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccccccc---c---ccccc-cccccc--------ccc-hhh
Confidence 4578999999999999999999999888999999999865422110 0 00000 000000 000 100
Q ss_pred CC----CCCchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHH
Q 008350 128 TN----PDPDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFIC 172 (569)
Q Consensus 128 ~~----~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~ 172 (569)
+. ......+++..|+.|||++++|..|+..||.+ ++.=++.++
T Consensus 68 l~~~~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~ 114 (126)
T 2lbc_A 68 FGASGLDNQPPEEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIF 114 (126)
T ss_dssp STTSSCCCCCCHHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred hcccccccCcCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHH
Confidence 00 11234678999999999999999999999875 444455554
No 24
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.46 E-value=4.3e-07 Score=97.41 Aligned_cols=200 Identities=14% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCCcccHHhhchhhhccCCCCCccCCcccceeec-cchhHHHHHHhhhhccCCCCCCCccchhHHHhhhc--ccceeee
Q 008350 307 VPLPPQNIYEALPLSRKWWPSWDTRSHLNCLQTCI-ASAKLTERIRKALEECDGEPEPPHHVQKFVMDECR--KWNLVWV 383 (569)
Q Consensus 307 ~p~~p~tI~ealp~~r~~~p~~d~r~~~n~L~t~~-~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck--~~nlvwv 383 (569)
.|+.++.|+++++.++.|...+..+.+ +.++. ......+. ++...... +++..........+ .+.+++.
T Consensus 162 C~i~~~~~~~~~~~l~~~~~~~~~~~~---~~~i~~~~~~~~~~---l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~ 233 (433)
T 1uwv_A 162 CPILAPQLEALLPKVRACLGSLQAMRH---LGHVELVQATSGTL---MILRHTAP--LSSADREKLERFSHSEGLDLYLA 233 (433)
T ss_dssp CTTBCHHHHHHHHHHHHHHTTCGGGGG---EEEEEEEEETTEEE---EEEEESSC--CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CcCCCHHHHHHHHHHHHHHHhcCCCCC---ccEEEEEEeCCCcE---EEEEecCC--CCHHHHHHHHHHhhcccEEEEEE
Confidence 688899999999999999887655433 33332 11011111 11111111 33332222222222 1233332
Q ss_pred ccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch----hhhhhhhhccCCCCcceeccccChhHHHH
Q 008350 384 GRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV----AYHLSVLKEMYPDGINVLSLFSGIGGAEV 459 (569)
Q Consensus 384 g~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~----~~~ls~lk~~~~~~i~vlDLFSGiGG~sl 459 (569)
.. .+....+.|.+. ... ....+.++.+-+ |+|+|.. .+...........+.+|+||+||.|.+++
T Consensus 234 ~~-------~~~~~~l~g~~~--~~~-~~g~~~~~~~~~-f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~ 302 (433)
T 1uwv_A 234 PD-------SEILETVSGEMP--WYD-SNGLRLTFSPRD-FIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTL 302 (433)
T ss_dssp SS-------SSCCEEEECCCC--EEE-ETTEEEECCSSS-CCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHH
T ss_pred CC-------CCeEEEEeCCCc--EEE-ECCEEEEECccc-ccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHH
Confidence 11 123456677432 222 456777888777 9998754 22221111122345789999999999999
Q ss_pred HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHHHHhccCCeeEEEEcCCCCcc
Q 008350 460 ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQMINAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 460 Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~~~~~~g~~DlliGGpPCQ~f 533 (569)
.+.+.+ ..|+++|+++.+++.++.|...++..+..++.+|+.+.... .+. .+.+|+|+..||..+.
T Consensus 303 ~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~-----~~~fD~Vv~dPPr~g~ 369 (433)
T 1uwv_A 303 PLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA-----KNGFDKVLLDPARAGA 369 (433)
T ss_dssp HHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG-----TTCCSEEEECCCTTCC
T ss_pred HHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh-----cCCCCEEEECCCCccH
Confidence 999885 36999999999999999988766666677889999875421 011 1469999999998753
No 25
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.44 E-value=5.9e-07 Score=90.28 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=86.8
Q ss_pred cccceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEE
Q 008350 393 PDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVV 472 (569)
Q Consensus 393 ~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~ 472 (569)
..+.+.+.|-+...+ ......+.++.... +|+.+........+......+.+|+|+|||+|++++.+.+.+-. ..|+
T Consensus 71 ~~~~~~l~G~~~~~~-~~e~g~~f~~~~~~-~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~ 147 (272)
T 3a27_A 71 TPHVKILYGKETETI-HKEYGCLFKLDVAK-IMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKP-KLVY 147 (272)
T ss_dssp --CCEEEECSCCEEE-EEETTEEEEEETTT-SCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCC-SEEE
T ss_pred ccceEEEeCCCcEEE-EEECCEEEEEechh-EEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCC-CEEE
Confidence 346677788551111 11234556666555 66665542221122333556788999999999999999887422 3699
Q ss_pred eeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 473 SVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 473 avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
++|+++.+++.++.|...++..+..++.+|+.++ .. . +.+|+|+.+||.
T Consensus 148 ~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--~------~~~D~Vi~d~p~ 196 (272)
T 3a27_A 148 AIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--K------DVADRVIMGYVH 196 (272)
T ss_dssp EEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--T------TCEEEEEECCCS
T ss_pred EEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--c------CCceEEEECCcc
Confidence 9999999999999988766666677889999887 32 1 479999999996
No 26
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.40 E-value=5.5e-07 Score=91.61 Aligned_cols=125 Identities=12% Similarity=0.086 Sum_probs=84.4
Q ss_pred cceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEee
Q 008350 395 EVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSV 474 (569)
Q Consensus 395 e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~av 474 (569)
++|.|.|.+ .+|.....+-++++-...-+|... ....-..+......+-+|+|+|||+|++++.+.+.|- ..|+|+
T Consensus 79 ~~e~L~G~~-~~~~~~E~G~~~~~D~~k~~f~~~-~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~av 154 (278)
T 3k6r_A 79 DYELLYGSD-TVTVHVENGIKYKLDVAKIMFSPA-NVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAI 154 (278)
T ss_dssp -CEEEECSC-CEEEEEETTEEEEEETTTSCCCGG-GHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEE
T ss_pred cceEEecCC-cEEEEEECCEEEEEeccceEEcCC-cHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEE
Confidence 667788853 344333333333333322223221 1122223444556688999999999999998888774 369999
Q ss_pred ccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 475 DISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 475 Eid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
|+++.|.+.++.|...++..+ ..++++|..++..+ +.+|.|+.++|+..
T Consensus 155 D~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~---------~~~D~Vi~~~p~~~ 204 (278)
T 3k6r_A 155 EKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE---------NIADRILMGYVVRT 204 (278)
T ss_dssp CCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC---------SCEEEEEECCCSSG
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc---------cCCCEEEECCCCcH
Confidence 999999999999987666554 45788999887632 57999999999764
No 27
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=98.34 E-value=3.5e-08 Score=102.66 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=99.0
Q ss_pred CCCeeeEeccccCCCc-chHHhhhhc----ccCCCceechhhc-chhhhccccccccCCCCCCCC--CCCCcccHHhhch
Q 008350 248 GPPYFYYENVALAPKG-VWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVHNLPIKNRHHL--VPLPPQNIYEALP 319 (569)
Q Consensus 248 ~p~~f~~~nv~~~~~~-~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyihnlp~~~r~~~--~p~~p~tI~ealp 319 (569)
+|.||++|||..+-++ .|..|-+.| |.++..++|++.| .||+|+|.||=-.-..=.++. .+....+|.++|.
T Consensus 122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~f~fP~~~~~~~~~~l~d~Le 201 (327)
T 3qv2_A 122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTPFKNEIQLHQEKESMISNYLD 201 (327)
T ss_dssp CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSCCCSCCCCCCCSCCCGGGGCC
T ss_pred CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCCCCCCCcccccccccHHHHhc
Confidence 7999999999988654 577777766 7899999999999 999999999643211101111 0112356666665
Q ss_pred hhhccCCCCCccCCcccceeeccchhHHHHHHh-------------hhhcc-CCCCCCCccch-hHHHhhhcccceeeec
Q 008350 320 LSRKWWPSWDTRSHLNCLQTCIASAKLTERIRK-------------ALEEC-DGEPEPPHHVQ-KFVMDECRKWNLVWVG 384 (569)
Q Consensus 320 ~~r~~~p~~d~r~~~n~L~t~~~s~~~~e~l~~-------------~~~~~-~~~~~~~~~vq-~~il~~ck~~nlvwvg 384 (569)
. ..|..+. -+.+..++... +.+.. .-...-+.++- ..........++++.+
T Consensus 202 ~--~~~~~y~------------l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~~y~~~~gs~l~~~~~~~~~~~~~~~~~ 267 (327)
T 3qv2_A 202 N--NVNESYS------------IPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPHFIPVKKAEDLL 267 (327)
T ss_dssp S--SCCGGGB------------CCHHHHHHHGGGSCEEETTSSCBCCCCTTTTTSSTTSCCEEESSCSSCCCCSSGGGGT
T ss_pred c--ccccccc------------CCHHHHHhhhcccccccccccccccccccceEEecCCCceeecccccccccCCceeec
Confidence 1 1111100 00001111000 00100 00000000000 0000000012345567
Q ss_pred cCccccCCcccceeeccCCCCcccc-CCcccceeeccccccccccchh
Q 008350 385 RNKLAPLEPDEVEMLLGFPKNHTRG-GGISRTDRYKSLGNSFQVDTVA 431 (569)
Q Consensus 385 ~~~~~~l~~~e~E~l~GfP~~~t~~-~~~s~t~R~k~lgn~fqvnt~~ 431 (569)
+.+.+.+++.|+.+|+|||++|+.. ...+.+.+++++||++.++.+.
T Consensus 268 ~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~ 315 (327)
T 3qv2_A 268 NKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIA 315 (327)
T ss_dssp TSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHH
T ss_pred CCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHH
Confidence 7788999999999999999999986 6688999999999999987653
No 28
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.28 E-value=2.5e-06 Score=90.10 Aligned_cols=130 Identities=19% Similarity=0.116 Sum_probs=85.0
Q ss_pred cceeeccC-CCCccccCCcccceeeccc-----cccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCce
Q 008350 395 EVEMLLGF-PKNHTRGGGISRTDRYKSL-----GNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRM 468 (569)
Q Consensus 395 e~E~l~Gf-P~~~t~~~~~s~t~R~k~l-----gn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~ 468 (569)
+.+.+.|. +..++.....+.+.++... + || .|.-... ..+......+-+|||+|||.|++++.+.+.|.
T Consensus 161 ~~~~l~G~~~~~~~~v~e~g~~f~v~~~~~~~t~-ff-~~~~~~~-~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga-- 235 (385)
T 2b78_A 161 VSAHLYGQEAPEQFLILENGISYNVFLNDGLMTG-IF-LDQRQVR-NELINGSAAGKTVLNLFSYTAAFSVAAAMGGA-- 235 (385)
T ss_dssp CEEEEEESCCCSSEEEEETTEEEEECSSSSSCCS-SC-GGGHHHH-HHHHHTTTBTCEEEEETCTTTHHHHHHHHTTB--
T ss_pred cceeecCCCCCceEEEEECCEEEEEeccccccCC-cC-CcHHHHH-HHHHHHhcCCCeEEEEeeccCHHHHHHHHCCC--
Confidence 45566775 2334422234556666665 4 66 4332111 01111113467899999999999999998874
Q ss_pred eEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCCeeEEEEcCCCCcc
Q 008350 469 KNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 469 k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~f 533 (569)
+.|+++|+++.+++.++.|...++.. +..++.+|+.++... + ......+|+|+..||+-+.
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~-~---~~~~~~fD~Ii~DPP~~~~ 298 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKY-A---RRHHLTYDIIIIDPPSFAR 298 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHH-H---HHTTCCEEEEEECCCCC--
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHH-H---HHhCCCccEEEECCCCCCC
Confidence 47999999999999999998766554 567888998775422 1 1122479999999999643
No 29
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.24 E-value=4.1e-06 Score=86.74 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=83.1
Q ss_pred cceeeccCCCCccccCCcccceeeccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEEEee
Q 008350 395 EVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSV 474 (569)
Q Consensus 395 e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~av 474 (569)
+.+.+.|.+...+.....+.++++.... +++.+.....-..+......+-+|+|+|||+|++++. .+ |. ..|+++
T Consensus 148 ~~~~l~G~~~~~~~~~e~g~~f~~d~~~-~~~~~~~~~er~~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~v 222 (336)
T 2yx1_A 148 ELEHLAGENRTLTIHKENGYRLWVDIAK-VYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAI 222 (336)
T ss_dssp CEEEEEECCCCEEEEEETTEEEEEETTT-SCCCGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHH-TT-TS--SEEEEE
T ss_pred ceEEEeCCCCcEEEEEECCEEEEEehHH-hccCCccHHHHHHHHHhcCCCCEEEEccCccCHHHHh-cc-CC--CEEEEE
Confidence 4566667543333333344555555554 6665543211112223344677899999999999999 66 42 479999
Q ss_pred ccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 475 DISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 475 Eid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
|+++.+.+.++.|...++. .+..++++|+.++. +.+|+|+.+||...
T Consensus 223 D~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~fD~Vi~dpP~~~ 270 (336)
T 2yx1_A 223 DINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VKGNRVIMNLPKFA 270 (336)
T ss_dssp ESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CCEEEEEECCTTTG
T ss_pred ECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CCCcEEEECCcHhH
Confidence 9999999999998876654 35678889988775 37999999999754
No 30
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=98.22 E-value=4.5e-06 Score=83.95 Aligned_cols=126 Identities=11% Similarity=0.047 Sum_probs=84.3
Q ss_pred cccceeeccCCCCccccCCcccceeeccc-cccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEE
Q 008350 393 PDEVEMLLGFPKNHTRGGGISRTDRYKSL-GNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNV 471 (569)
Q Consensus 393 ~~e~E~l~GfP~~~t~~~~~s~t~R~k~l-gn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V 471 (569)
..+.+.+.|.|. .+.....+.++++... ..++|.+... ...+......+-+|+|+|||.|++++.+.+.|.. .|
T Consensus 77 ~~~~~~l~G~~~-~~~~~e~g~~f~~d~~~~~f~~~~~~~--~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~--~V 151 (278)
T 2frn_A 77 KPDYELLYGSDT-VTVHVENGIKYKLDVAKIMFSPANVKE--RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKA--KV 151 (278)
T ss_dssp ---CEEEECSCC-EEEEEETTEEEEEETTTSCCCGGGHHH--HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCC--EE
T ss_pred ccceEEEECCCC-EEEEEECCEEEEEEccceeEcCCcHHH--HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCC--EE
Confidence 345667778532 2222234445555322 2255554321 1222333455788999999999999999998863 69
Q ss_pred EeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 472 VSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 472 ~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
+++|+++.+.+.++.|...++..+ ..++++|+.++.. .+.+|+|+.+||+..
T Consensus 152 ~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~fD~Vi~~~p~~~ 204 (278)
T 2frn_A 152 IAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENIADRILMGYVVRT 204 (278)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSCEEEEEECCCSSG
T ss_pred EEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCCccEEEECCchhH
Confidence 999999999999998877655554 5578999988864 157999999999653
No 31
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=98.20 E-value=2.7e-07 Score=94.66 Aligned_cols=182 Identities=19% Similarity=0.196 Sum_probs=93.6
Q ss_pred ccCCCeeeEeccccCCC----cchHHhhhhc----ccCCCceechhhc-chhhhccccc----cccCCCCCCCCCCCCcc
Q 008350 246 AAGPPYFYYENVALAPK----GVWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYV----HNLPIKNRHHLVPLPPQ 312 (569)
Q Consensus 246 ~~~p~~f~~~nv~~~~~----~~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyi----hnlp~~~r~~~~p~~p~ 312 (569)
..+|.||++|||..+-. ..|..|-+.| |.+...++||++| .||+|+|.|| ..++..--++.......
T Consensus 100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~ 179 (331)
T 3ubt_Y 100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP 179 (331)
T ss_dssp HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence 46899999999987642 3566666655 7899999999999 9999999997 33333322232222334
Q ss_pred cHHhhchhhhc-cCCCCCccCCc--ccce----eec--cchhHHHHH-HhhhhccCCCCCCCccch--------hHHHhh
Q 008350 313 NIYEALPLSRK-WWPSWDTRSHL--NCLQ----TCI--ASAKLTERI-RKALEECDGEPEPPHHVQ--------KFVMDE 374 (569)
Q Consensus 313 tI~ealp~~r~-~~p~~d~r~~~--n~L~----t~~--~s~~~~e~l-~~~~~~~~~~~~~~~~vq--------~~il~~ 374 (569)
++.+++..+.. -+|..+..... .++. ... .......+- ...+...... ...... ..+...
T Consensus 180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 257 (331)
T 3ubt_Y 180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFT--VQASGRQCQLHPQAPVMLKV 257 (331)
T ss_dssp CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCC--CCSCSTTCCBCTTSCCCEEE
T ss_pred cHHHHhhhcccCCcccccccccccccccccchhhhccccccccccccccccccccccc--ccccCcccccccccceeeee
Confidence 55555533321 01111100000 0000 000 000000000 0000000000 000000 000000
Q ss_pred hcc-cceeeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 375 CRK-WNLVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 375 ck~-~nlvwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
++. ...+..++...+.|++.|+.+|+|||++|... ..+.+.+++++||++.+...
T Consensus 258 ~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~-~~s~~~~ykqiGNAVpp~la 313 (331)
T 3ubt_Y 258 SKNLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLA 313 (331)
T ss_dssp ETTEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHH
T ss_pred cCCCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeC-CCCHHHHhhhCccCccHHHH
Confidence 111 11222234445889999999999999999864 34778889999999987643
No 32
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.18 E-value=4.6e-06 Score=88.01 Aligned_cols=130 Identities=17% Similarity=0.087 Sum_probs=86.8
Q ss_pred cceeeccCCCCccccCCcccceeecccc---ccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeEE
Q 008350 395 EVEMLLGFPKNHTRGGGISRTDRYKSLG---NSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNV 471 (569)
Q Consensus 395 e~E~l~GfP~~~t~~~~~s~t~R~k~lg---n~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V 471 (569)
+.+.+.|.++..+.......+.++...+ .+|+.....+.+ +......+.+|||+|||.|++++.+.+.|. ..|
T Consensus 168 ~~~~l~g~~~~~~~~~e~g~~~~~~~~~~~tg~f~~~~~~~~~--~~~~~~~~~~VLDl~~G~G~~~~~la~~g~--~~v 243 (396)
T 2as0_A 168 IERVLLGKEKYRTIIQEGRAKFIVDMRGQKTGFFLDQRENRLA--LEKWVQPGDRVLDVFTYTGGFAIHAAIAGA--DEV 243 (396)
T ss_dssp EEEEEEESCCCEEEEEETTEEEEEESSSSSSCCCSTTHHHHHH--HGGGCCTTCEEEETTCTTTHHHHHHHHTTC--SEE
T ss_pred ccceecCCCCceEEEEeCCEEEEEeccccccCccCCHHHHHHH--HHHHhhCCCeEEEecCCCCHHHHHHHHCCC--CEE
Confidence 4556778654444333344555555521 366654333222 222333567899999999999999999874 479
Q ss_pred EeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCeeEEEEcCCCCc
Q 008350 472 VSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 472 ~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
+++|+++.+++..+.|+..++.. +..++.+|+.++... +....+.+|+|+..||+-.
T Consensus 244 ~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~----~~~~~~~fD~Vi~dpP~~~ 301 (396)
T 2as0_A 244 IGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEK----LQKKGEKFDIVVLDPPAFV 301 (396)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH----HHHTTCCEEEEEECCCCSC
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHH----HHhhCCCCCEEEECCCCCC
Confidence 99999999999999988765544 456778888765422 1112357999999999854
No 33
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.17 E-value=3.9e-06 Score=88.32 Aligned_cols=128 Identities=18% Similarity=0.061 Sum_probs=87.0
Q ss_pred cceeeccCCCCccccCCcccceeecccc----ccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHcCCceeE
Q 008350 395 EVEMLLGFPKNHTRGGGISRTDRYKSLG----NSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKN 470 (569)
Q Consensus 395 e~E~l~GfP~~~t~~~~~s~t~R~k~lg----n~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~ 470 (569)
+.+.++|.++..+.....+.++++.... .+|+..... ...+... .+.+|||+|||.|++++.+.+.+ ..
T Consensus 161 ~~~~l~G~~~~~~~~~e~g~~f~i~~~~~~~~g~f~~~~~~--~~~~~~~--~~~~VLDlg~G~G~~~~~la~~~---~~ 233 (382)
T 1wxx_A 161 YVRPLLGEVPERVQVQEGRVRYLVDLRAGQKTGAYLDQREN--RLYMERF--RGERALDVFSYAGGFALHLALGF---RE 233 (382)
T ss_dssp EEEEEESCCCSEEEEEETTEEEEEECSTTSCCCCCGGGHHH--HHHGGGC--CEEEEEEETCTTTHHHHHHHHHE---EE
T ss_pred ccceecCCCCceEEEEECCEEEEEEchhcccCccccchHHH--HHHHHhc--CCCeEEEeeeccCHHHHHHHHhC---CE
Confidence 4456778655555444445556665552 255543221 1112222 56789999999999999998873 57
Q ss_pred EEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEEcCCCCcc
Q 008350 471 VVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 471 V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~f 533 (569)
|+++|+++.+++..+.|...++..+..++.+|+.++... + ......+|+|+..||+-+.
T Consensus 234 v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~-~---~~~~~~fD~Ii~dpP~~~~ 292 (382)
T 1wxx_A 234 VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRR-L---EKEGERFDLVVLDPPAFAK 292 (382)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHH-H---HHTTCCEEEEEECCCCSCC
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHH-H---HhcCCCeeEEEECCCCCCC
Confidence 999999999999999988766666677888888876432 1 1123579999999998543
No 34
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.10 E-value=4e-06 Score=87.02 Aligned_cols=85 Identities=16% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+|||||||.|++++.+.+.|. .|+++|+++.+++.++.|...++..+ ..++++|+.++..... ...+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~----~~~~~ 225 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE----RRGST 225 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH----HHTCC
T ss_pred CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH----hcCCC
Confidence 456899999999999999999885 68999999999999999887665543 5688889887653211 11257
Q ss_pred eeEEEEcCCCCccc
Q 008350 521 FDLVIGGSPCNNLA 534 (569)
Q Consensus 521 ~DlliGGpPCQ~fS 534 (569)
+|+|+..|||.+.+
T Consensus 226 fD~Ii~dPP~~~~~ 239 (332)
T 2igt_A 226 YDIILTDPPKFGRG 239 (332)
T ss_dssp BSEEEECCCSEEEC
T ss_pred ceEEEECCccccCC
Confidence 99999999997765
No 35
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.01 E-value=1.2e-05 Score=85.55 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=60.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+-+|||+|||.|++++.+.+.|. + |+++|+++.+.+..+.|...++... .+.++|+.++.... .+.+|
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l~~~-------~~~fD 282 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTLRGL-------EGPFH 282 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHHHTC-------CCCEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHHHHh-------cCCCC
Confidence 367899999999999999999885 4 9999999999999999887665542 35567776543210 14599
Q ss_pred EEEEcCCC
Q 008350 523 LVIGGSPC 530 (569)
Q Consensus 523 lliGGpPC 530 (569)
+|+..|||
T Consensus 283 ~Ii~dpP~ 290 (393)
T 4dmg_A 283 HVLLDPPT 290 (393)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99999999
No 36
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.94 E-value=2e-05 Score=74.44 Aligned_cols=78 Identities=21% Similarity=0.274 Sum_probs=63.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|++||.|+++..+.+.|. ..|+++|+++.+++.++.+....+. +..++.+|+.++. +.+|
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D 114 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD 114 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence 457899999999999999999875 3799999999999999888665443 5667888888763 3699
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..||+...+
T Consensus 115 ~v~~~~p~~~~~ 126 (207)
T 1wy7_A 115 IVIMNPPFGSQR 126 (207)
T ss_dssp EEEECCCCSSSS
T ss_pred EEEEcCCCcccc
Confidence 999999986543
No 37
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.93 E-value=1.3e-05 Score=77.60 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=67.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||++||.|++++.+.+.|. .|+++|+++.+++.++.+....+. ++..++.+|+.++.. .+.+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~ 145 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS---------FLKA 145 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG---------GCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc---------cCCC
Confidence 467899999999999999999984 689999999999998888765544 346678888877652 1579
Q ss_pred eEEEEcCCCCccccC
Q 008350 522 DLVIGGSPCNNLAGS 536 (569)
Q Consensus 522 DlliGGpPCQ~fS~a 536 (569)
|+|+..|||......
T Consensus 146 D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 146 DVVFLSPPWGGPDYA 160 (241)
T ss_dssp SEEEECCCCSSGGGG
T ss_pred CEEEECCCcCCcchh
Confidence 999999999987654
No 38
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.89 E-value=1.1e-05 Score=75.48 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=64.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||++||.|.+++.+.+.|. ..|+++|+++.+++.++.|....+..+..++++|+.++... + ..+.+|
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~-----~~~~fD 115 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA-G-----TTSPVD 115 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH-C-----CSSCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh-c-----cCCCcc
Confidence 457899999999999997777775 47999999999999999888766655667888888766421 1 125799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+..||..
T Consensus 116 ~i~~~~p~~ 124 (189)
T 3p9n_A 116 LVLADPPYN 124 (189)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCC
Confidence 999999854
No 39
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.88 E-value=1.9e-05 Score=79.07 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=64.7
Q ss_pred CCCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||++||.||.+..+.+. |- ..|+++|+++.+.+.++.|....+.++..++.+|+.++... +. ...+
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~---~~~~ 155 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY-LL---KNEI 155 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH-HH---HTTC
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh-hh---hccc
Confidence 34678999999999999988873 31 36999999999999999887766666667788888766421 10 0125
Q ss_pred CeeEEEEcCCCCccccCC
Q 008350 520 GFDLVIGGSPCNNLAGSN 537 (569)
Q Consensus 520 ~~DlliGGpPCQ~fS~ag 537 (569)
.+|+|+..+||.++....
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~ 173 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKD 173 (274)
T ss_dssp CEEEEEEEECCC------
T ss_pred cCCEEEEcCCCCCCcccc
Confidence 799999999998866544
No 40
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.84 E-value=1.6e-05 Score=75.78 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=61.5
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC--CCcccccccccccchhhHHHHHhccCC-
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ--KGTLIDFADVQQLDANRIEQMINAFGG- 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~--~~~~~~~~DI~~i~~~~l~~~~~~~g~- 520 (569)
+.+|||++||.|++++.+.+.|. ..|+++|+++.+++.++.|....+. ++..++.+|+.++... + ..+.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~-~-----~~~~~ 125 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ-P-----QNQPH 125 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS-C-----CSSCC
T ss_pred CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh-h-----ccCCC
Confidence 56899999999999998777775 4799999999999999988766554 4566788888765321 0 0146
Q ss_pred eeEEEEcCCC
Q 008350 521 FDLVIGGSPC 530 (569)
Q Consensus 521 ~DlliGGpPC 530 (569)
+|+|+..||.
T Consensus 126 fD~I~~~~~~ 135 (201)
T 2ift_A 126 FDVVFLDPPF 135 (201)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999999994
No 41
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.80 E-value=2.8e-05 Score=74.08 Aligned_cols=77 Identities=9% Similarity=0.071 Sum_probs=61.1
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+|||++||.|.+++.+.+.|. ..|+++|+++.+++.++.|....+.++..++.+|+.++... ..+.+|+
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-------~~~~fD~ 125 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-------KGTPHNI 125 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-------CCCCEEE
T ss_pred CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-------cCCCCCE
Confidence 56899999999999998777775 37999999999999999887665555566788887764211 1247999
Q ss_pred EEEcCC
Q 008350 524 VIGGSP 529 (569)
Q Consensus 524 liGGpP 529 (569)
|+..||
T Consensus 126 V~~~~p 131 (202)
T 2fpo_A 126 VFVDPP 131 (202)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999999
No 42
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.78 E-value=3.7e-05 Score=79.08 Aligned_cols=90 Identities=10% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||++||.||.++.+.+. +-. ..|+|+|+++.+.+.++.|....+..++.++.+|+.++.... . .++.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-~----~~~~ 174 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-P----RYHE 174 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-G----GGTT
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-c----ccCC
Confidence 34678999999999999988774 211 269999999999999999887666666778889988875321 0 1247
Q ss_pred eeEEEEcCCCCccccCC
Q 008350 521 FDLVIGGSPCNNLAGSN 537 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ag 537 (569)
||.|+..+||.+.....
T Consensus 175 fD~Vl~D~PcSg~G~~~ 191 (309)
T 2b9e_A 175 VHYILLDPSCSGSGMPS 191 (309)
T ss_dssp EEEEEECCCCCC-----
T ss_pred CCEEEEcCCcCCCCCCc
Confidence 99999999999876544
No 43
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.76 E-value=3.7e-05 Score=83.31 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||++||.||.++.+.+. +-. -.|+|+|+++.+++.++.|....+..++.+..+|..++.. .. .+.
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~-~~------~~~ 175 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP-HF------SGF 175 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH-HH------TTC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh-hc------ccc
Confidence 34678999999999999988764 211 2689999999999999999877776666677788776542 11 157
Q ss_pred eeEEEEcCCCCccccCC
Q 008350 521 FDLVIGGSPCNNLAGSN 537 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ag 537 (569)
||+|+..+||.+.....
T Consensus 176 FD~Il~DaPCSg~G~~r 192 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFR 192 (456)
T ss_dssp EEEEEEECCCCCGGGTT
T ss_pred CCEEEECCCCCCccccc
Confidence 99999999998866543
No 44
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=97.75 E-value=7.1e-05 Score=76.75 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=68.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||++||.|+.+..+.+..-.-..|+++|+++.+++.++.+....+.++..++.+|+.++.. . .+.+
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--~------~~~f 188 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--L------NVEF 188 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--G------CCCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--c------cccC
Confidence 4567899999999999999887521112699999999999999988776666667788899887753 1 1579
Q ss_pred eEEEEcCCCCccccCC
Q 008350 522 DLVIGGSPCNNLAGSN 537 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag 537 (569)
|+|+..+||.+.....
T Consensus 189 D~Il~d~Pcsg~g~~~ 204 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIH 204 (315)
T ss_dssp EEEEEECCTTSTTTCC
T ss_pred CEEEEeCCCCCccccc
Confidence 9999999998766543
No 45
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.73 E-value=2.9e-05 Score=82.59 Aligned_cols=80 Identities=18% Similarity=0.053 Sum_probs=62.4
Q ss_pred CCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccch-hhHHHHHhc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDA-NRIEQMINA 517 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~-~~l~~~~~~ 517 (569)
.+.+|||||||+|++++-+.+. |. ..|++||+++.|++.++.|...++..+ ..++.+|+.++.. ..
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------- 122 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------- 122 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-------
Confidence 3578999999999999977763 42 579999999999999999987666544 5677788766532 11
Q ss_pred cCCeeEEEEcCCCC
Q 008350 518 FGGFDLVIGGSPCN 531 (569)
Q Consensus 518 ~g~~DlliGGpPCQ 531 (569)
.+.||+|+..|||.
T Consensus 123 ~~~fD~V~lDP~g~ 136 (392)
T 3axs_A 123 GFGFDYVDLDPFGT 136 (392)
T ss_dssp SSCEEEEEECCSSC
T ss_pred CCCCcEEEECCCcC
Confidence 14799999999876
No 46
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.71 E-value=0.00011 Score=72.56 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=64.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|++++.+.+.+- ..|+++|+++.+++..+.|...++..+ ..++.+|+.++... +. .+.+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~~-----~~~f 120 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-IP-----KERA 120 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-SC-----TTCE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-hc-----cCCc
Confidence 467899999999999999998874 279999999999999998877655543 56888999887531 11 1579
Q ss_pred eEEEEcCCCCcc
Q 008350 522 DLVIGGSPCNNL 533 (569)
Q Consensus 522 DlliGGpPCQ~f 533 (569)
|+|+..|||-..
T Consensus 121 D~Ii~npPy~~~ 132 (259)
T 3lpm_A 121 DIVTCNPPYFAT 132 (259)
T ss_dssp EEEEECCCC---
T ss_pred cEEEECCCCCCC
Confidence 999999999765
No 47
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=97.67 E-value=1.8e-05 Score=82.06 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=94.6
Q ss_pred ccCCCeeeEeccccCCC----cchHHhhhhc----ccCCCceechhhc-chhhhccccccccCCC-CC-CCCCCCC---c
Q 008350 246 AAGPPYFYYENVALAPK----GVWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVHNLPIK-NR-HHLVPLP---P 311 (569)
Q Consensus 246 ~~~p~~f~~~nv~~~~~----~~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyihnlp~~-~r-~~~~p~~---p 311 (569)
..+|.||++|||..+-. ..|..|-+.| |.++..++||+.| .||+|+|.||=..-.. +. ....|.+ .
T Consensus 110 ~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~ 189 (327)
T 2c7p_A 110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELN 189 (327)
T ss_dssp HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCC
T ss_pred hccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCC
Confidence 36899999999998864 2566666655 7889999999999 9999999998543211 00 0112222 3
Q ss_pred ccHHhhchhhh---ccCCC-----CCccCCc-ccceeec-cchhHHHHHHhhhhccC-CCCCCCccchhHHHh-hhcccc
Q 008350 312 QNIYEALPLSR---KWWPS-----WDTRSHL-NCLQTCI-ASAKLTERIRKALEECD-GEPEPPHHVQKFVMD-ECRKWN 379 (569)
Q Consensus 312 ~tI~ealp~~r---~~~p~-----~d~r~~~-n~L~t~~-~s~~~~e~l~~~~~~~~-~~~~~~~~vq~~il~-~ck~~n 379 (569)
.++.+++.... .|... |....+. +.-.... ...... . .-..... .. +++.....-.. ..+..+
T Consensus 190 ~tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~--~~~Ti~~~~~~~~~~~~~ 264 (327)
T 2c7p_A 190 TFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKG-G--QGERIYSTRG--IAITLSAYGGGIFAKTGG 264 (327)
T ss_dssp CCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTC-C--TTCEEEETTS--CBCCCCSSCCSTTTTTCE
T ss_pred CcHHHHhcccCCcccccccCCcceeEeeccccCccchhhhhhccCC-c--cccccccCCC--CcCceecCCCCccCCCCc
Confidence 56777764221 11000 1000000 0000000 000000 0 0000000 00 11111000000 000111
Q ss_pred eeeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 380 LVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 380 lvwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
. +++...+.|++.|..+|+|||++|... ++.+.+++++||++.+...
T Consensus 265 ~--~~~~~~R~LT~rE~aRLQgFPd~f~f~--gs~~~~ykqIGNAVp~~l~ 311 (327)
T 2c7p_A 265 Y--LVNGKTRKLHPRECARVMGYPDSYKVH--PSTSQAYKQFGNSVVINVL 311 (327)
T ss_dssp E--EETTEEEECCHHHHHHHTTCCTTSCCC--SSHHHHHHHHHHCCCHHHH
T ss_pred c--CCCCCCcCCCHHHHHHHCCCCcCcEeC--CCHHHHHhHccCCCCHHHH
Confidence 2 235667899999999999999999884 7889999999999988654
No 48
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=97.66 E-value=2.1e-05 Score=77.84 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=53.9
Q ss_pred CCCeeeEeccccCCCcchHHhhhhcccCCCceechhhcchhhhccccccccCCCCCCCCCCCCcccHH
Q 008350 248 GPPYFYYENVALAPKGVWDTISRFLYDVEPEFVDSKYFCAAARKRGYVHNLPIKNRHHLVPLPPQNIY 315 (569)
Q Consensus 248 ~p~~f~~~nv~~~~~~~~~~is~~l~~~~p~~vds~~~sa~~r~rgyihnlp~~~r~~~~p~~p~tI~ 315 (569)
.|.||++|||..+-......|.+|| .+.+.+|||++|.+++|+|.||+|+|..++....|..+.+..
T Consensus 122 ~P~~fv~ENV~gL~~~~~~~i~~~l-~~~~~vLnA~dfgvpQrRr~f~g~~~~~~~~~~~p~~~~~~~ 188 (230)
T 2qrv_B 122 RPFFWMFVDNLVLNKEDLDVASRFL-EMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELS 188 (230)
T ss_dssp SCCEEEEEECSCSCHHHHHHHHHHH-TSCCEECCCCCSCC----CEEEECSTTSSTTCCSCSCHHHHH
T ss_pred CCcEEEEeccHHhhhccHHHHHHHH-cCCcEEEEcccCCcCcccEEEEeecCCCCccccCCcChhhcc
Confidence 3558889999999888888999999 679999999999999999999999999988777777654443
No 49
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=97.66 E-value=7.3e-05 Score=81.18 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||++||.||.++.+.+..-.--.|+|+|+++.+.+.++.|....+.. +.+..+|+.++.. .. .+.|
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~-~~------~~~F 171 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE-AF------GTYF 171 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH-HH------CSCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh-hc------cccC
Confidence 35678999999999999988864111126999999999999999988777666 6677888776541 11 2579
Q ss_pred eEEEEcCCCCccccCC
Q 008350 522 DLVIGGSPCNNLAGSN 537 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag 537 (569)
|+|+..|||.+.....
T Consensus 172 D~Il~D~PcSg~G~~r 187 (464)
T 3m6w_A 172 HRVLLDAPCSGEGMFR 187 (464)
T ss_dssp EEEEEECCCCCGGGTT
T ss_pred CEEEECCCcCCccccc
Confidence 9999999998876554
No 50
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.66 E-value=3.4e-05 Score=87.84 Aligned_cols=82 Identities=23% Similarity=0.200 Sum_probs=65.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+|||||||.|++++.+.+.|. ..|++||+++.+++..+.|...++.. ...++.+|+.++... ..+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~-------~~~~ 609 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE-------ANEQ 609 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH-------CCCC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh-------cCCC
Confidence 467899999999999999998886 46999999999999999998766554 456778888765321 1257
Q ss_pred eeEEEEcCCCCcc
Q 008350 521 FDLVIGGSPCNNL 533 (569)
Q Consensus 521 ~DlliGGpPCQ~f 533 (569)
+|+|+..|||-.-
T Consensus 610 fD~Ii~DPP~f~~ 622 (703)
T 3v97_A 610 FDLIFIDPPTFSN 622 (703)
T ss_dssp EEEEEECCCSBC-
T ss_pred ccEEEECCccccC
Confidence 9999999999443
No 51
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=97.65 E-value=7.2e-06 Score=89.47 Aligned_cols=51 Identities=33% Similarity=0.472 Sum_probs=41.0
Q ss_pred ccCCCeeeEeccccCCC----cchHHhhhhc----ccCC---------Cceechhhcchhhhcccccc
Q 008350 246 AAGPPYFYYENVALAPK----GVWDTISRFL----YDVE---------PEFVDSKYFCAAARKRGYVH 296 (569)
Q Consensus 246 ~~~p~~f~~~nv~~~~~----~~~~~is~~l----~~~~---------p~~vds~~~sa~~r~rgyih 296 (569)
..+|.||++|||..+-. ..|..|-+-| |.+. +.++|+++|.||+|+|.||=
T Consensus 217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fiv 284 (482)
T 3me5_A 217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLV 284 (482)
T ss_dssp HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEE
T ss_pred HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEE
Confidence 46899999999999855 2566666555 5564 78999999999999999973
No 52
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=97.62 E-value=9.3e-06 Score=84.65 Aligned_cols=48 Identities=38% Similarity=0.526 Sum_probs=41.6
Q ss_pred eccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 383 VGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 383 vg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
+++...+.|++.|+.+|+|||++|......+.+.+++++||++.++.+
T Consensus 287 ~h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~ 334 (343)
T 1g55_A 287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVV 334 (343)
T ss_dssp HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHH
T ss_pred cCCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHH
Confidence 467778999999999999999999986556888999999999988654
No 53
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=97.61 E-value=0.00012 Score=74.03 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=65.0
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
...+|+|+.||.|.+.+.+.+. + ..|+++|+++.+++..+.|....+..+ ..++.+|+.+... ..++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~---~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-------~~f~~ 192 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSD---AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------EKFAS 192 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSS---CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------GGTTT
T ss_pred CCCEEEEEeCchhHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-------cccCC
Confidence 3468999999999999999887 4 368999999999999998877655544 6678889876432 12234
Q ss_pred eeEEEEcCCCCcccc
Q 008350 521 FDLVIGGSPCNNLAG 535 (569)
Q Consensus 521 ~DlliGGpPCQ~fS~ 535 (569)
+|+|+..|||-+...
T Consensus 193 ~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 193 IEMILSNPPYVKSSA 207 (284)
T ss_dssp CCEEEECCCCBCGGG
T ss_pred CCEEEEcCCCCCccc
Confidence 499999999987665
No 54
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=97.61 E-value=8.9e-05 Score=80.73 Aligned_cols=88 Identities=10% Similarity=0.136 Sum_probs=68.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||++||.||.++.+.+.--.-..|+|+|+++..++.++.|....+..++.++.+|+.++... . .+.||
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-~------~~~fD 189 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-V------PEMFD 189 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH-S------TTCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh-c------cccCC
Confidence 4678999999999999988874110126999999999999999988766666677788888876421 1 14799
Q ss_pred EEEEcCCCCccccCC
Q 008350 523 LVIGGSPCNNLAGSN 537 (569)
Q Consensus 523 lliGGpPCQ~fS~ag 537 (569)
+|+..+||.+.....
T Consensus 190 ~Il~D~PcSg~G~~~ 204 (479)
T 2frx_A 190 AILLDAPCSGEGVVR 204 (479)
T ss_dssp EEEEECCCCCGGGGG
T ss_pred EEEECCCcCCccccc
Confidence 999999998876543
No 55
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=97.60 E-value=0.00014 Score=65.84 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+.||.|.++..+.+.|. + |+++|+++.+++.++.+....+. +..++.+|+.+.... +. ...+.+|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~---~~~~~~D 112 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--E-AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPE-AK---AQGERFT 112 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--E-EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHH-HH---HTTCCEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--e-EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHh-hh---ccCCceE
Confidence 567899999999999999999985 3 99999999999998888765544 566788888764321 11 1123699
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+..+|..
T Consensus 113 ~i~~~~~~~ 121 (171)
T 1ws6_A 113 VAFMAPPYA 121 (171)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999999864
No 56
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.56 E-value=8.2e-05 Score=59.41 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=39.9
Q ss_pred cCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 41 SSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 41 ~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
+..+......+.+|+.||||++.|.+|+..+|..++++.++.|+..
T Consensus 3 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 3 SGSSGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSCCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3445556677999999999999999999999988899999999974
No 57
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=97.53 E-value=7.4e-06 Score=87.46 Aligned_cols=175 Identities=18% Similarity=0.166 Sum_probs=97.3
Q ss_pred cCCCeeeEeccccCCCc----chHHhhhhc----ccCCCceechhhc-chhhhccccccc------cCCCCCC---CCCC
Q 008350 247 AGPPYFYYENVALAPKG----VWDTISRFL----YDVEPEFVDSKYF-CAAARKRGYVHN------LPIKNRH---HLVP 308 (569)
Q Consensus 247 ~~p~~f~~~nv~~~~~~----~~~~is~~l----~~~~p~~vds~~~-sa~~r~rgyihn------lp~~~r~---~~~p 308 (569)
.+|.||++|||..+-.. .|..|-+.| |.++..++|++.| .||+|+|.||=- .|-..+. .++.
T Consensus 176 ~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~~ 255 (403)
T 4dkj_A 176 EMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVK 255 (403)
T ss_dssp GSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGCC
T ss_pred cCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCccccccccccc
Confidence 78999999999999653 466666665 7789999999999 999999999722 2322111 1112
Q ss_pred CCcccHHhhchhhh--cc-------CCCCCc-cCCcccceeeccchhHHHHHHhhhhccCCCCCCCccchhHHHhhhccc
Q 008350 309 LPPQNIYEALPLSR--KW-------WPSWDT-RSHLNCLQTCIASAKLTERIRKALEECDGEPEPPHHVQKFVMDECRKW 378 (569)
Q Consensus 309 ~~p~tI~ealp~~r--~~-------~p~~d~-r~~~n~L~t~~~s~~~~e~l~~~~~~~~~~~~~~~~vq~~il~~ck~~ 378 (569)
..+++|.+++..-. .| .+.... +.++..-....+.. ... -+.+....+.-++++.. ....
T Consensus 256 ~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~Tlt~~--------~~~~ 325 (403)
T 4dkj_A 256 NPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTT-FNS-ENYVYNINGIGPTLTAS--------GANS 325 (403)
T ss_dssp CCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCS-CGG-GSEEEETTSBBCCCCSS--------SGGG
T ss_pred cccccHHHHhccccccccchhhhhccccccccccchhccccccccc-ccc-CcceecCCCcccceecC--------CCCc
Confidence 23467777775321 00 111000 01000000000000 000 00000011111111110 0012
Q ss_pred ceeeeccCccccCCcccceeeccCCC-CccccC---Ccccceeeccccccccccchh
Q 008350 379 NLVWVGRNKLAPLEPDEVEMLLGFPK-NHTRGG---GISRTDRYKSLGNSFQVDTVA 431 (569)
Q Consensus 379 nlvwvg~~~~~~l~~~e~E~l~GfP~-~~t~~~---~~s~t~R~k~lgn~fqvnt~~ 431 (569)
.++...+.+.+.|+|.|+.+|+|||+ +|.... ..+.+.++++.||++.++.+.
T Consensus 326 ~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~ 382 (403)
T 4dkj_A 326 RIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILE 382 (403)
T ss_dssp SCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHH
T ss_pred eeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHH
Confidence 23333556789999999999999998 566542 268889999999999987653
No 58
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.53 E-value=7.6e-05 Score=78.87 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=61.1
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc---------------CCCCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT---------------NQKGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~---------------N~~~~~~~~~DI~~i 506 (569)
.+.+|||+|||+|++++.+.+. |- ..|+++|+++.+++..+.|...+ +..+..++++|+.++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence 4678999999999999988775 42 25999999999999999998765 333355667777654
Q ss_pred chhhHHHHHhccCCeeEEEEcCCCC
Q 008350 507 DANRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 507 ~~~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
.... .+.||+|+..|||.
T Consensus 125 ~~~~-------~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 125 MAER-------HRYFHFIDLDPFGS 142 (378)
T ss_dssp HHHS-------TTCEEEEEECCSSC
T ss_pred HHhc-------cCCCCEEEeCCCCC
Confidence 3210 14699999999997
No 59
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.53 E-value=0.00033 Score=73.90 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
|+.....+..|++|||+++.|.+||...+. |.+..+|+|+.-+
T Consensus 165 g~~~~~~i~~l~~MGf~~~~~~~AL~a~~n-n~~~A~e~L~~gi 207 (368)
T 1oqy_A 165 GSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLTGI 207 (368)
T ss_dssp TTTHHHHHHHHHTTTCCSHHHHHHHHHSCS-STTHHHHTTTTSS
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 456778899999999999999999999997 8899999998643
No 60
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=8.3e-05 Score=55.57 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.......+.+|++|||+++.+.+|+..+| +++..++.|+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence 34456779999999999999999999997 78999999985
No 61
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.52 E-value=0.00013 Score=58.18 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
.......+.+|+.|||+++.|.+|+..+|..+++..++.|+..
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3445567999999999999999999999877899999999974
No 62
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.51 E-value=0.00011 Score=78.69 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=64.5
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc--CCCCcccccccccccchhhHHHHHhccCCe
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT--NQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~--N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+-+|+||+||.|+.++.+.+.|. .|+++|+++.+++..+.|.... +..+..++++|+.++... +.. +.+
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~-----~~f 164 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKT-----FHP 164 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHH-----HCC
T ss_pred CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccC-----CCc
Confidence 67899999999999999999884 6999999999999999998765 444567889999886422 211 379
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+..||=.+
T Consensus 165 DvV~lDPPrr~ 175 (410)
T 3ll7_A 165 DYIYVDPARRS 175 (410)
T ss_dssp SEEEECCEEC-
T ss_pred eEEEECCCCcC
Confidence 99999999654
No 63
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.50 E-value=7.5e-05 Score=56.45 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
++.....+.+|++|||+++.|.+|+..+|. |.+..+|.|+.
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~e~L~~ 45 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYN-NPHRAVEYLLT 45 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTS-CSHHHHHHHHH
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 344567789999999999999999999997 78999999986
No 64
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.49 E-value=0.00017 Score=67.72 Aligned_cols=74 Identities=23% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|++||.|+++..+.+.|. ..|+++|+++.+++..+.+.. +..++.+|+.++. +.+|
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D 112 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD 112 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence 457899999999999999998874 469999999999998887632 4668889988763 3799
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..||-..+.
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999999976543
No 65
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=97.45 E-value=0.00032 Score=73.53 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=64.6
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+.+.+|+|++||.|++.+.+.+.|.. ..|+++|+++.+++..+.|....+. ....+..+|+.++... .+
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~--------~~ 285 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY--------VD 285 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT--------CS
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc--------cC
Confidence 455788999999999999999888741 2689999999999999988765544 2456788999887532 15
Q ss_pred CeeEEEEcCCC
Q 008350 520 GFDLVIGGSPC 530 (569)
Q Consensus 520 ~~DlliGGpPC 530 (569)
.+|+|+..||.
T Consensus 286 ~fD~Ii~npPy 296 (373)
T 3tm4_A 286 SVDFAISNLPY 296 (373)
T ss_dssp CEEEEEEECCC
T ss_pred CcCEEEECCCC
Confidence 79999999996
No 66
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=97.43 E-value=0.00015 Score=73.75 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=60.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++..+.+.|. .|+++|+++.++..++.+....+.++..++.+|+.++.. +.+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~----------~~~ 107 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF----------PKF 107 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC----------CCC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc----------ccC
Confidence 4567899999999999999998873 699999999999988887654444567788999987752 368
Q ss_pred eEEEEcCCCCcc
Q 008350 522 DLVIGGSPCNNL 533 (569)
Q Consensus 522 DlliGGpPCQ~f 533 (569)
|+|++.+|++..
T Consensus 108 D~Vv~n~py~~~ 119 (299)
T 2h1r_A 108 DVCTANIPYKIS 119 (299)
T ss_dssp SEEEEECCGGGH
T ss_pred CEEEEcCCcccc
Confidence 999999998753
No 67
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=97.43 E-value=0.00019 Score=65.93 Aligned_cols=81 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|++++.+.+.+. ..|+++|+++.+++.++.+....+. ++..++.+|+.+.... +. ...+.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~---~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ-FY---EEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH-HH---HTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHH-HH---hcCCCC
Confidence 456899999999999998877764 4799999999999988888765543 2456778888765321 11 112579
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..+|
T Consensus 118 D~i~~~~~ 125 (187)
T 2fhp_A 118 DLVLLDPP 125 (187)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 99999988
No 68
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00018 Score=57.13 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=38.0
Q ss_pred CCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 43 ASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 43 ~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
++......+.+|+.|||+++.+.+|+..++. +++..++.|+..+
T Consensus 5 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~A~e~L~~~~ 48 (63)
T 2dak_A 5 SSGPPEDCVTTIVSMGFSRDQALKALRATNN-SLERAVDWIFSHI 48 (63)
T ss_dssp SCCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-CSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 3445677899999999999999999999987 6899999999743
No 69
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=97.43 E-value=0.0002 Score=74.20 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=64.2
Q ss_pred CCCcceeccccChhHHHHHHHHcC-CceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG-VRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG-i~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+++|++||.|++.+-+...+ -. ..++++|+++.+++..+.|....+.....+..+|+.++... .+.
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~--------~~~ 272 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF--------FPE 272 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT--------CCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc--------cCC
Confidence 446789999999999998777744 11 25899999999999999998766655567889999887532 145
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+..|||-
T Consensus 273 ~D~Ii~npPyg 283 (354)
T 3tma_A 273 VDRILANPPHG 283 (354)
T ss_dssp CSEEEECCCSC
T ss_pred CCEEEECCCCc
Confidence 79999999983
No 70
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=97.42 E-value=0.00015 Score=66.65 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=60.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|+|+.||.|.+++.+.+.|. ..|+++|+++.+++.++.+....+.. ...++.+|+.+.... ..+.+
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~~f 101 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-------LTGRF 101 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH-------BCSCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh-------hcCCC
Confidence 456899999999999999988864 47999999999999988887655432 345667777653211 12469
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+..+|.
T Consensus 102 D~i~~~~~~ 110 (177)
T 2esr_A 102 DLVFLDPPY 110 (177)
T ss_dssp EEEEECCSS
T ss_pred CEEEECCCC
Confidence 999999885
No 71
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.42 E-value=0.00026 Score=67.79 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=64.0
Q ss_pred cCCCCcceeccccC-hhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 440 MYPDGINVLSLFSG-IGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSG-iGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+.+|||+.|| .|.+++.+.+. + ..|+++|+++.+++..+.|....+. ...++.+|+..+.. +.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~~~la~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~~----- 120 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--VV----- 120 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--TC-----
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--cc-----
Confidence 34567899999999 99999999887 5 3689999999999999888765554 56788888764432 11
Q ss_pred cCCeeEEEEcCCCCccc
Q 008350 518 FGGFDLVIGGSPCNNLA 534 (569)
Q Consensus 518 ~g~~DlliGGpPCQ~fS 534 (569)
.+.+|+|+..||+-...
T Consensus 121 ~~~fD~I~~npp~~~~~ 137 (230)
T 3evz_A 121 EGTFDVIFSAPPYYDKP 137 (230)
T ss_dssp CSCEEEEEECCCCC---
T ss_pred cCceeEEEECCCCcCCc
Confidence 15799999999986544
No 72
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.41 E-value=0.00016 Score=52.88 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=33.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
....+..|++|||+++.|.+|+..++. |.+..++.|+.
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence 346789999999999999999999975 78999999985
No 73
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00036 Score=75.01 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||++||.||.+..+.+..-.-..|+++|+++..++..+.|....+.++..++.+|+.++... +. .+.|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~~-----~~~f 331 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-IG-----EEVA 331 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-SC-----SSCE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-hc-----cCCC
Confidence 34678999999999999988874211026899999999999998887766666677888898876521 11 1469
Q ss_pred eEEEEcCCCCccccCC
Q 008350 522 DLVIGGSPCNNLAGSN 537 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag 537 (569)
|+|+..+||.+.....
T Consensus 332 D~Vl~D~Pcsg~g~~~ 347 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIG 347 (450)
T ss_dssp EEEEEECCCCCGGGTT
T ss_pred CEEEEcCCCCCCeeec
Confidence 9999999998876654
No 74
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=97.38 E-value=0.00036 Score=64.48 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=62.5
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
....+.+.+|||+.||.|.++..+.+.+. .|+++|+++.+.+..+.+....+.++..++.+|+..+..- .
T Consensus 17 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-~------ 86 (185)
T 3mti_A 17 AEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-V------ 86 (185)
T ss_dssp HTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT-C------
T ss_pred HHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh-c------
Confidence 34455678899999999999999998864 6999999999999988887665555566667777665311 0
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..++.
T Consensus 87 ~~~fD~v~~~~~~ 99 (185)
T 3mti_A 87 REPIRAAIFNLGY 99 (185)
T ss_dssp CSCEEEEEEEEC-
T ss_pred cCCcCEEEEeCCC
Confidence 1479999987644
No 75
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.36 E-value=0.00021 Score=54.66 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=40.0
Q ss_pred CCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhh
Q 008350 43 ASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSA 88 (569)
Q Consensus 43 ~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~ 88 (569)
++.-+.+.++.|++|||++++|.+|++.-|.......+|.|...++
T Consensus 5 ~~~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 5 SSGVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp CCSCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 3355667789999999999999999999999999999999986543
No 76
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=97.36 E-value=0.00037 Score=69.35 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+.||.|.+.+.+.+..-. ..|+++|+++.+.+..+.|....+.++..++.+|+.+... .+.+|
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~---------~~~fD 178 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA---------GQQFA 178 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT---------TCCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc---------cCCcc
Confidence 4578999999999999988864211 3699999999999999988766555556788888876421 15799
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..|||.+.+
T Consensus 179 ~Iv~npPy~~~~ 190 (276)
T 2b3t_A 179 MIVSNPPYIDEQ 190 (276)
T ss_dssp EEEECCCCBCTT
T ss_pred EEEECCCCCCcc
Confidence 999999998654
No 77
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.32 E-value=0.00011 Score=77.68 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCeeeEeccccCCCcchHHhhhhcccCCCceechhhcchhhhccccccccCCCCCCCCCCCCcccHHh
Q 008350 248 GPPYFYYENVALAPKGVWDTISRFLYDVEPEFVDSKYFCAAARKRGYVHNLPIKNRHHLVPLPPQNIYE 316 (569)
Q Consensus 248 ~p~~f~~~nv~~~~~~~~~~is~~l~~~~p~~vds~~~sa~~r~rgyihnlp~~~r~~~~p~~p~tI~e 316 (569)
.|.||++|||..|......+|.+|| .+++.+|||++|.+++|+|-||+|+|..++....|.....+.+
T Consensus 278 ~P~~fv~ENV~gL~~~~~~~i~~~L-~v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~~~~p~~~~~~s~ 345 (386)
T 2pv0_B 278 GPFFWMFVDNLVLNKEDLDVASRFL-EMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSL 345 (386)
T ss_dssp SCCEEEEEECSCSCHHHHHHHHHHT-TSCCCEEECCCSSSCCCEEEEEECSSSSSTTCCTTSCHHHHHH
T ss_pred CCcEEEEEechhhhhcchHHHHHHH-cCCeEEEEccccCccccccEEEEECCCcCCcCCCCcCcccccc
Confidence 3558899999999777788999999 6899999999997666666699999999887766666555543
No 78
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=97.30 E-value=7.9e-05 Score=85.42 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=43.6
Q ss_pred cceeeeccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccch
Q 008350 378 WNLVWVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTV 430 (569)
Q Consensus 378 ~nlvwvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt~ 430 (569)
.+..++++...+.|++.|+++|+|||++|+.. ++.+.+++++||++.+...
T Consensus 680 ~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA 730 (784)
T 4ft4_B 680 HNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVA 730 (784)
T ss_dssp SSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHH
T ss_pred CCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHH
Confidence 34567788888999999999999999999884 6889999999999987543
No 79
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=97.30 E-value=0.00083 Score=61.49 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC--cccccccccccchhhHHHHHhccCC
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG--TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~--~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+|||+.||.|.+...+.+.+. .++++|+++.+.+..+.+....+..+ ..++.+|+.+... .+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~ 119 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK 119 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence 567899999999999999988853 68999999999998888776555554 6677888876442 157
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+..+|..
T Consensus 120 ~D~v~~~~~~~ 130 (194)
T 1dus_A 120 YNKIITNPPIR 130 (194)
T ss_dssp EEEEEECCCST
T ss_pred ceEEEECCCcc
Confidence 99999987754
No 80
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=97.29 E-value=0.00022 Score=66.59 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=49.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|+|+.||.|.+...+.+.+-. ..++++|+++.+++..+.+....+. ...++.+|+.+.. .......+.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~f 102 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWL----IERAERGRPW 102 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHHHH----HHHHHTTCCB
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhh----hhhhhccCcc
Confidence 45789999999999999999988432 3699999999999888876554333 4556777777622 1111123689
Q ss_pred eEEEEcCCCCccc
Q 008350 522 DLVIGGSPCNNLA 534 (569)
Q Consensus 522 DlliGGpPCQ~fS 534 (569)
|+|+..||+-...
T Consensus 103 D~i~~npp~~~~~ 115 (215)
T 4dzr_A 103 HAIVSNPPYIPTG 115 (215)
T ss_dssp SEEEECCCCCC--
T ss_pred cEEEECCCCCCCc
Confidence 9999999986543
No 81
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=97.29 E-value=0.00012 Score=77.27 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=39.3
Q ss_pred eccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccc
Q 008350 383 VGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDT 429 (569)
Q Consensus 383 vg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt 429 (569)
+++...+.|+..|..+|+|||++|.+ .++.+..++++||++.+..
T Consensus 311 ~HP~~~R~lTvRE~ARlQsFPD~f~f--~g~~~~~~~qIGNAVPp~l 355 (376)
T 3g7u_A 311 IHPYHPRVITPREAARLQGFPDWFRF--HVTKWHSFRQIGNSVSPIV 355 (376)
T ss_dssp BCSSSSSBCCHHHHHHHHTCCTTCCC--CSSHHHHHHHHHTSCCHHH
T ss_pred cCCccCcCCCHHHHHHhCCCCcceEE--CCChHHhheeeecCCCHHH
Confidence 67777899999999999999999988 4678888999999998754
No 82
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=97.26 E-value=0.00042 Score=73.95 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||++||.||.+..+.+.+-. ..|+++|+++...+..+.|....+. ...++.+|+.++.. .+. .+.+
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~-~~~-----~~~f 316 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQ-WCG-----EQQF 316 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHH-HHT-----TCCE
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchh-hcc-----cCCC
Confidence 34678999999999999999886532 3699999999999888888765544 35677888887642 121 1479
Q ss_pred eEEEEcCCCCccccCC
Q 008350 522 DLVIGGSPCNNLAGSN 537 (569)
Q Consensus 522 DlliGGpPCQ~fS~ag 537 (569)
|+|+..+||.+.....
T Consensus 317 D~Vl~D~Pcsg~g~~~ 332 (429)
T 1sqg_A 317 DRILLDAPCSATGVIR 332 (429)
T ss_dssp EEEEEECCCCCGGGTT
T ss_pred CEEEEeCCCCcccccC
Confidence 9999999999876554
No 83
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=97.25 E-value=0.00041 Score=67.76 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=60.9
Q ss_pred CCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccC
Q 008350 443 DGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+.+|||++||.|++.+.+.+. + ..|+++|+++.+++..+.+....+..+ ..++.+|+.+...+.+.. ...+
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNG---WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCC---CeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhc--ccCC
Confidence 4568999999999988877664 4 368999999999999998876655543 567888887621111110 0013
Q ss_pred CeeEEEEcCCCCccc
Q 008350 520 GFDLVIGGSPCNNLA 534 (569)
Q Consensus 520 ~~DlliGGpPCQ~fS 534 (569)
.+|+|+..||+-...
T Consensus 140 ~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 140 IYDFCMCNPPFFANQ 154 (254)
T ss_dssp CBSEEEECCCCC---
T ss_pred cccEEEECCCCccCc
Confidence 699999999987543
No 84
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.24 E-value=0.00013 Score=57.27 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=39.9
Q ss_pred cccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 37 HSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 37 ~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
|+.+..=++|....+..++.|||+++.|.+||+.+|. |++.++|-|.+.
T Consensus 9 ~~~l~~ls~se~e~V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH 57 (63)
T 1wgn_A 9 YSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAH 57 (63)
T ss_dssp THHHHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred hHHHHhhCcchHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 3334333556667799999999999999999999997 779999999863
No 85
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.24 E-value=0.00048 Score=54.79 Aligned_cols=40 Identities=35% Similarity=0.589 Sum_probs=35.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
....+..|+.|||++++|.+|+..|+. |++..++.|+.-+
T Consensus 9 ~~~~I~~L~~MGF~~~~a~~AL~~~~~-nve~A~e~L~~~~ 48 (63)
T 1wji_A 9 DEKALKHITEMGFSKEASRQALMDNGN-NLEAALNVLLTSN 48 (63)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHTTS-CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCC
Confidence 456789999999999999999999997 7899999999753
No 86
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.22 E-value=0.00016 Score=76.24 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=34.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
+....|..|+.|||+++.|.+|+..|+. |.+..++.|+..
T Consensus 324 ee~eaI~rL~~mGF~~~~a~~al~a~~~-n~e~A~~~L~~~ 363 (368)
T 1oqy_A 324 QEKEAIERLKALGFPESLVIQAYFACEK-NENLAANFLLSQ 363 (368)
T ss_dssp TTHHHHHHHHHHTCCSHHHHHHTSSSSS-CSSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhhC
Confidence 4556789999999999999999999996 568889999963
No 87
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.22 E-value=0.00045 Score=56.54 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
....+..++.|++|||+++.|.+|+..++. |++..+|+|+.-
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~ 67 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHC
Confidence 345677899999999999999999999996 789999999963
No 88
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=97.21 E-value=0.00085 Score=63.08 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=64.9
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+.+|||+.||.|.++..+.+.|. ..|+++|+++.+++..+.+....+..+..+..+|+.+... +
T Consensus 57 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------~ 124 (205)
T 3grz_A 57 AMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVD----------G 124 (205)
T ss_dssp HCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCC----------S
T ss_pred hccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCC----------C
Confidence 345678999999999999999999875 4799999999999988888765555556778888876431 5
Q ss_pred CeeEEEEcCCCCc
Q 008350 520 GFDLVIGGSPCNN 532 (569)
Q Consensus 520 ~~DlliGGpPCQ~ 532 (569)
.+|+|+..+|.+.
T Consensus 125 ~fD~i~~~~~~~~ 137 (205)
T 3grz_A 125 KFDLIVANILAEI 137 (205)
T ss_dssp CEEEEEEESCHHH
T ss_pred CceEEEECCcHHH
Confidence 7999999987764
No 89
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=97.17 E-value=0.00067 Score=66.26 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=62.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc--------CCCCcccccccccccchhhHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT--------NQKGTLIDFADVQQLDANRIEQ 513 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~--------N~~~~~~~~~DI~~i~~~~l~~ 513 (569)
+.+.+|||++||.|++++.+.+.+-. ..|+++|+++.++...+.+.... +.++..++.+|+.+.....+.
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~- 125 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE- 125 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc-
Confidence 34678999999999999999887632 36899999999988887766543 445667888999874322121
Q ss_pred HHhccCCeeEEEEcCCCCc
Q 008350 514 MINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 514 ~~~~~g~~DlliGGpPCQ~ 532 (569)
.+.+|.|+.-.|...
T Consensus 126 ----~~~~d~v~~~~p~p~ 140 (246)
T 2vdv_E 126 ----KGQLSKMFFCFPDPH 140 (246)
T ss_dssp ----TTCEEEEEEESCCCC
T ss_pred ----ccccCEEEEECCCcc
Confidence 257898887777643
No 90
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=97.16 E-value=0.0004 Score=68.87 Aligned_cols=89 Identities=21% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh---cCCC-CcccccccccccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ---TNQK-GTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~---~N~~-~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+|||+.||.|.+.+.+.+.+-. ..|+++|+++.+++..+.|... ++.. ...++.+|+.++....+...+ ..
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~-~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGL-PD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTC-CT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhcc-CC
Confidence 4578999999999999988887422 4799999999999999988654 3333 256788999887432211100 12
Q ss_pred CCeeEEEEcCCCCcc
Q 008350 519 GGFDLVIGGSPCNNL 533 (569)
Q Consensus 519 g~~DlliGGpPCQ~f 533 (569)
+.+|+|+..||....
T Consensus 114 ~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCEEEEEECCCC---
T ss_pred CCcCEEEECCCCcCC
Confidence 579999999998754
No 91
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.13 E-value=0.0014 Score=67.24 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=62.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+-+|||++||.||.++.+.+..-. ..|+++|+++.+++..+.+....+ ....++++|..++.. .+..+ ..+.+|
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D 100 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD 100 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence 4568999999999999998876211 369999999999999888765443 456678888877641 12210 114799
Q ss_pred EEEEcCCCCc
Q 008350 523 LVIGGSPCNN 532 (569)
Q Consensus 523 lliGGpPCQ~ 532 (569)
.|+..+||..
T Consensus 101 ~Vl~D~gvSs 110 (301)
T 1m6y_A 101 GILMDLGVST 110 (301)
T ss_dssp EEEEECSCCH
T ss_pred EEEEcCccch
Confidence 9999999964
No 92
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.11 E-value=0.00023 Score=54.47 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=34.5
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
++.+++|||++++|.+|++..|....+.-+|.|++.+-
T Consensus 13 lq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 13 LQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKMSG 50 (54)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 46799999999999999999999999999999998654
No 93
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.00052 Score=56.31 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=37.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
.....+.+|+.|||+++.|.+|+..+|..+++..++.|+..+
T Consensus 8 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 8 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp SCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 456778999999999999999999999878999999999743
No 94
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=97.09 E-value=0.00066 Score=63.30 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=62.3
Q ss_pred cCCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+.+|||+.||.|.++..+.+. +-. ..|+++|+++.+.+..+.+....+. ++..++.+|+.++... .
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~------ 90 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY-I------ 90 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT-C------
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh-c------
Confidence 3445679999999999999988775 211 2689999999999988888765443 3466788998776521 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..+|-
T Consensus 91 ~~~fD~v~~~~~~ 103 (197)
T 3eey_A 91 DCPVKAVMFNLGY 103 (197)
T ss_dssp CSCEEEEEEEESB
T ss_pred cCCceEEEEcCCc
Confidence 1579999998876
No 95
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=97.07 E-value=0.00054 Score=72.39 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=70.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCce-------------------------------------eEEEeeccCHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRM-------------------------------------KNVVSVDISEVNRNIV 484 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~-------------------------------------k~V~avEid~~A~~t~ 484 (569)
..+.+++|+|||.|++.+.+...+.+. ..|+++|+++.+++..
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 346789999999999988765543210 2589999999999999
Q ss_pred HHHHhhcCCC-CcccccccccccchhhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHHHH
Q 008350 485 RSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDL 561 (569)
Q Consensus 485 ~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII~~ 561 (569)
+.|....+.. ...+.++|+.++... ..+|+|+..||=. . |.|....-..||.++.++++.
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~~~---------~~~D~Iv~NPPyg------~--rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFKSE---------DEFGFIITNPPYG------E--RLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCCCS---------CBSCEEEECCCCC------C--SHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCceEEEECChhhcCcC---------CCCcEEEECCCCc------C--ccCCHHHHHHHHHHHHHHHhh
Confidence 9987765543 355778898887632 4789999999942 1 221111223466666666653
No 96
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=97.06 E-value=0.00074 Score=71.64 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=61.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCce-------------------------------------eEEEeeccCHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRM-------------------------------------KNVVSVDISEVNRNIV 484 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~-------------------------------------k~V~avEid~~A~~t~ 484 (569)
....+++|.|||.|++.+-+...+.++ ..|+++|+++.+++..
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 446789999999999987655433210 1489999999999999
Q ss_pred HHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 485 RSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 485 ~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
+.|....+..+ ..+..+|+.++... ..+|+|+..||-
T Consensus 280 r~Na~~~gl~~~I~~~~~D~~~~~~~---------~~fD~Iv~NPPY 317 (393)
T 3k0b_A 280 KQNAVEAGLGDLITFRQLQVADFQTE---------DEYGVVVANPPY 317 (393)
T ss_dssp HHHHHHTTCTTCSEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHhCCCC---------CCCCEEEECCCC
Confidence 99987665543 56788999887632 479999999995
No 97
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=97.05 E-value=0.0015 Score=61.52 Aligned_cols=79 Identities=19% Similarity=0.054 Sum_probs=63.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+.||.|.++..+.+.+. .|+++|+++.+.+..+.++...+.++..++.+|+.+.... .+.+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~ 144 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA--------RAPF 144 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc--------CCCc
Confidence 4567899999999999999988863 6899999999999888887666666677888998875532 1579
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+....+.
T Consensus 145 D~i~~~~~~~ 154 (210)
T 3lbf_A 145 DAIIVTAAPP 154 (210)
T ss_dssp EEEEESSBCS
T ss_pred cEEEEccchh
Confidence 9999976554
No 98
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.05 E-value=0.00067 Score=48.41 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHH
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLL 84 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll 84 (569)
.....+..|+.|||+++.+.+|+..++. |.+..++.|+
T Consensus 3 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~-n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSMGFDPLEAAQALDAANG-DLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHC
Confidence 3456789999999999999999999976 7788888773
No 99
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=97.02 E-value=0.00066 Score=71.01 Aligned_cols=81 Identities=19% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc-cchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ-LDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~-i~~~~l~~~~~~~g~~ 521 (569)
.+.+|+|++ |.|.+++.+.+.|.. ..|+++|+++.+++..+.|....+..+..++.+|+.+ +.. .. .+.+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~-~~------~~~f 242 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPD-YA------LHKF 242 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCT-TT------SSCB
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchh-hc------cCCc
Confidence 357899999 999999999888743 3799999999999999988776555456788999988 431 11 1479
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+..|||..
T Consensus 243 D~Vi~~~p~~~ 253 (373)
T 2qm3_A 243 DTFITDPPETL 253 (373)
T ss_dssp SEEEECCCSSH
T ss_pred cEEEECCCCch
Confidence 99999999954
No 100
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=97.02 E-value=0.001 Score=70.29 Aligned_cols=77 Identities=23% Similarity=0.312 Sum_probs=63.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|.+++.+.+.|. .|+++|+++.+++..+.|...++. ...++.+|+.+.... .+.+|
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~--------~~~fD 300 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTE--------EARFD 300 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCT--------TCCEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhcccc--------CCCeE
Confidence 456899999999999999999885 689999999999999988765543 366888998877532 15799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+..||..
T Consensus 301 ~Ii~npp~~ 309 (381)
T 3dmg_A 301 IIVTNPPFH 309 (381)
T ss_dssp EEEECCCCC
T ss_pred EEEECCchh
Confidence 999999975
No 101
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.01 E-value=0.00069 Score=53.99 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=35.5
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
....+.+|+.||||++.|.+|+..+|..+++..++.|+.
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 346789999999999999999999998789999999995
No 102
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.01 E-value=0.00039 Score=69.53 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=59.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCH-------HHHHHHHHHHhhcCCCC-cccccccccccchhhHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISE-------VNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~-------~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~ 514 (569)
.+.+|||++||.|.+++.+.+.|. .|+++|+++ .+++.++.|...++..+ ..++++|+.++.. .+..
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~-~~~~- 157 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMP-ALVK- 157 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHH-HHHH-
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHH-hhhc-
Confidence 356899999999999999999874 589999999 88887776654333323 5677888876542 1211
Q ss_pred HhccCCeeEEEEcCCCC
Q 008350 515 INAFGGFDLVIGGSPCN 531 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ 531 (569)
..+.+|+|+..||=.
T Consensus 158 --~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 158 --TQGKPDIVYLDPMYP 172 (258)
T ss_dssp --HHCCCSEEEECCCC-
T ss_pred --cCCCccEEEECCCCC
Confidence 014799999998753
No 103
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=96.98 E-value=0.0012 Score=62.88 Aligned_cols=82 Identities=15% Similarity=0.055 Sum_probs=62.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|.+.+.+.+..-. ..++++|+++.++...+.+....+.++..++.+|+.++.. .+. .+.+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~-----~~~~D 113 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YFE-----DGEID 113 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TSC-----TTCCS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hcC-----CCCCC
Confidence 3567999999999999988876322 3689999999999988888766555667788999987541 111 14799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+..+|..
T Consensus 114 ~i~~~~~~~ 122 (214)
T 1yzh_A 114 RLYLNFSDP 122 (214)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 999998753
No 104
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=96.98 E-value=0.00093 Score=70.71 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=61.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCce-------------------------------------eEEEeeccCHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRM-------------------------------------KNVVSVDISEVNRNIV 484 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~-------------------------------------k~V~avEid~~A~~t~ 484 (569)
....+++|.|||.|++.+-+...+.++ -.++++|+++.+++..
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 446789999999999887555433210 1489999999999999
Q ss_pred HHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCC
Q 008350 485 RSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 485 ~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPC 530 (569)
+.|....+..+ ..+..+|+.++... ..+|+|+..||-
T Consensus 273 r~Na~~~gl~~~I~~~~~D~~~l~~~---------~~fD~Iv~NPPY 310 (384)
T 3ldg_A 273 RKNAREVGLEDVVKLKQMRLQDFKTN---------KINGVLISNPPY 310 (384)
T ss_dssp HHHHHHTTCTTTEEEEECCGGGCCCC---------CCSCEEEECCCC
T ss_pred HHHHHHcCCCCceEEEECChHHCCcc---------CCcCEEEECCch
Confidence 99987665544 56788999887632 479999999996
No 105
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.97 E-value=0.0015 Score=62.22 Aligned_cols=76 Identities=11% Similarity=0.015 Sum_probs=60.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.+++.+.+.+. .|+++|+++.+++..+.+....+.+ +..++.+|+.+.... .+.
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~--------~~~ 122 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD--------LPL 122 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT--------SCC
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc--------CCC
Confidence 4567899999999999999988864 6999999999999988887666655 567888888774321 247
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+.+.
T Consensus 123 ~D~v~~~~ 130 (204)
T 3njr_A 123 PEAVFIGG 130 (204)
T ss_dssp CSEEEECS
T ss_pred CCEEEECC
Confidence 99999765
No 106
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=96.95 E-value=0.0016 Score=61.23 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=63.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.+++.+.+.+-. ..|+++|+++.+++..+.+....+..+..++.+|+.+.... .+.+
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~~ 109 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD--------LPDP 109 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT--------SCCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc--------CCCC
Confidence 45678999999999999999988622 36899999999999988887666555566788888655421 1479
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+.+.+..
T Consensus 110 D~i~~~~~~~ 119 (204)
T 3e05_A 110 DRVFIGGSGG 119 (204)
T ss_dssp SEEEESCCTT
T ss_pred CEEEECCCCc
Confidence 9999887654
No 107
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.90 E-value=0.0011 Score=66.22 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+-||.|.++..+.+.| ..|+++|+++..+..++.++.. .++..++.+|+.++....+. ..+.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~----~~~~~ 98 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVK----TDKPL 98 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSC----CSSCE
T ss_pred CCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhc----cCCCe
Confidence 346789999999999999999987 3699999999999988877643 34567899999998754321 01356
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
| |++.+|=
T Consensus 99 ~-vv~NlPY 106 (255)
T 3tqs_A 99 R-VVGNLPY 106 (255)
T ss_dssp E-EEEECCH
T ss_pred E-EEecCCc
Confidence 7 7777773
No 108
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.90 E-value=0.00091 Score=68.96 Aligned_cols=80 Identities=13% Similarity=0.043 Sum_probs=60.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCc----eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVR----MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~----~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+|+|++||.|++.+.+.+..-. -..++++|+++.+.+..+.|....+. ...+.++|...... .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~---------~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL---------V 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC---------C
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc---------c
Confidence 4689999999999999888765311 14689999999999998887654444 45677788654321 2
Q ss_pred CCeeEEEEcCCCCc
Q 008350 519 GGFDLVIGGSPCNN 532 (569)
Q Consensus 519 g~~DlliGGpPCQ~ 532 (569)
+.+|+|++.||+..
T Consensus 200 ~~fD~Ii~NPPfg~ 213 (344)
T 2f8l_A 200 DPVDVVISDLPVGY 213 (344)
T ss_dssp CCEEEEEEECCCSE
T ss_pred CCccEEEECCCCCC
Confidence 57999999999744
No 109
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=96.88 E-value=0.001 Score=67.05 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+-||.|.++..+.+.|. .|+++|+++..+..++.+....+. ++..++.+|+.++.. +.
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~----------~~ 93 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL----------PF 93 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC----------CC
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc----------hh
Confidence 3567899999999999999998874 689999999999888876543222 345678899887642 36
Q ss_pred eeEEEEcCCCCcc
Q 008350 521 FDLVIGGSPCNNL 533 (569)
Q Consensus 521 ~DlliGGpPCQ~f 533 (569)
+|+|++.+|++-.
T Consensus 94 fD~vv~nlpy~~~ 106 (285)
T 1zq9_A 94 FDTCVANLPYQIS 106 (285)
T ss_dssp CSEEEEECCGGGH
T ss_pred hcEEEEecCcccc
Confidence 8999999998753
No 110
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.88 E-value=0.0015 Score=49.94 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=36.3
Q ss_pred CCCChhHHHHHHHhCCC-CHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 43 ASSSKSKLIDHFVGMGF-SVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 43 ~~ss~~~~~~~~~~MGF-~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
+.......+.+|++||| +++.+.+|+..+|. |++..+|.|+.
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~ 50 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGG-DINAAIERLLG 50 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 34455678999999999 99999999999997 78999999975
No 111
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=96.88 E-value=0.0017 Score=64.13 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=59.1
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|+|+.||.|.+++.+.+.|. .|+++|+++.+++..+.|...++.. ..+..+|+.+. ++ .+.
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~~-----~~~ 184 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----LP-----FGP 184 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----GG-----GCC
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----Cc-----CCC
Confidence 45568999999999999999999885 6999999999999998887654443 55666666542 11 157
Q ss_pred eeEEEEcCCC
Q 008350 521 FDLVIGGSPC 530 (569)
Q Consensus 521 ~DlliGGpPC 530 (569)
+|+|+..++.
T Consensus 185 fD~Vv~n~~~ 194 (254)
T 2nxc_A 185 FDLLVANLYA 194 (254)
T ss_dssp EEEEEEECCH
T ss_pred CCEEEECCcH
Confidence 9999987653
No 112
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.0017 Score=58.84 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=59.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++..+.+.+ ..++++|+++.+++..+.+....+.++..++.+|+.+.. + .+.+
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----~-----~~~~ 101 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL----D-----KLEF 101 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG----G-----GCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc----c-----CCCC
Confidence 346789999999999999998844 479999999999998888876555555667778876521 1 1579
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..+|
T Consensus 102 D~i~~~~~ 109 (183)
T 2yxd_A 102 NKAFIGGT 109 (183)
T ss_dssp SEEEECSC
T ss_pred cEEEECCc
Confidence 99999988
No 113
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=96.85 E-value=0.0011 Score=64.11 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=63.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+|||+.||.|.+.+.+.+.+-. ..|+++|+++.++...+.+....+..+..++.+|+.++....++ .+.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~-----~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIP-----DNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSC-----TTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcC-----CCChh
Confidence 3567999999999999999876533 36899999999998888877666666777888998875322111 25799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
.|+.-+|+.
T Consensus 108 ~v~~~~~~p 116 (218)
T 3dxy_A 108 MVQLFFPDP 116 (218)
T ss_dssp EEEEESCCC
T ss_pred eEEEeCCCC
Confidence 999887665
No 114
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=96.85 E-value=0.0022 Score=65.36 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=63.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+.||.|+++..+.+.+.+-..|+++|+++...+..+.+....+.++..+..+|+.+.... .+.+
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~--------~~~f 145 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE--------FSPY 145 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc--------CCCe
Confidence 35678999999999999988887532125999999999998888877655555667788898875432 1579
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+..+++..
T Consensus 146 D~Iv~~~~~~~ 156 (317)
T 1dl5_A 146 DVIFVTVGVDE 156 (317)
T ss_dssp EEEEECSBBSC
T ss_pred EEEEEcCCHHH
Confidence 99999888764
No 115
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=96.84 E-value=0.0029 Score=59.74 Aligned_cols=78 Identities=28% Similarity=0.298 Sum_probs=60.9
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+.+|||+.||.|.++..+.+.|. .++++|+++.+++..+.+....+ ++..++.+|+.++... .+
T Consensus 35 ~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~--------~~ 102 (227)
T 1ve3_A 35 YMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFE--------DK 102 (227)
T ss_dssp SCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSC--------TT
T ss_pred hcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCC--------CC
Confidence 334477999999999999999999885 68999999999988887765433 5567888898876421 14
Q ss_pred CeeEEEEcCC
Q 008350 520 GFDLVIGGSP 529 (569)
Q Consensus 520 ~~DlliGGpP 529 (569)
.+|+|+..++
T Consensus 103 ~~D~v~~~~~ 112 (227)
T 1ve3_A 103 TFDYVIFIDS 112 (227)
T ss_dssp CEEEEEEESC
T ss_pred cEEEEEEcCc
Confidence 7899988776
No 116
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.84 E-value=0.0016 Score=49.88 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=34.7
Q ss_pred hhHHHHHHHhCCC-CHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 47 KSKLIDHFVGMGF-SVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 47 ~~~~~~~~~~MGF-~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
....+..|++||| +++.+.+|+..+|. |++..++.|+..
T Consensus 11 ~~~~l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~ 50 (53)
T 2knz_A 11 FQQQLEQLNSMGFINREANLQALIATGG-DINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHc
Confidence 3456899999999 99999999999997 789999999864
No 117
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.83 E-value=0.002 Score=67.71 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC------CcccccccccccchhhHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK------GTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~------~~~~~~~DI~~i~~~~l~~~ 514 (569)
...+.+|||++||.||=++.+.+.+-. ..|+|+|+++...+.++.|....... ++.+...|.+.+. ..
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~-----~~ 219 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWG-----EL 219 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHH-----HH
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcc-----hh
Confidence 345788999999999999999887643 57999999999988888876544321 2223344444332 21
Q ss_pred HhccCCeeEEEEcCCCCcc
Q 008350 515 INAFGGFDLVIGGSPCNNL 533 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ~f 533 (569)
..+.||.|+..+||.+-
T Consensus 220 --~~~~fD~VLlDaPCSg~ 236 (359)
T 4fzv_A 220 --EGDTYDRVLVDVPCTTD 236 (359)
T ss_dssp --STTCEEEEEEECCCCCH
T ss_pred --ccccCCEEEECCccCCC
Confidence 12579999999999873
No 118
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.83 E-value=0.00075 Score=53.82 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=35.8
Q ss_pred CccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 1 MIDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 1 ~~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
.|.++++||||++.+.||+...|..|.+.=++.|+....
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 367899999999999999999999999999999998765
No 119
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=96.82 E-value=0.0023 Score=62.12 Aligned_cols=80 Identities=20% Similarity=0.136 Sum_probs=63.1
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|+|+.||.|+++..+.+. |-. ..++++|+++.+.+..+.+....+.++ ..++.+|+.+... .+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 161 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE---------EE 161 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC---------CC
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC---------CC
Confidence 45678999999999999999887 311 369999999999998888876665555 6678888886532 14
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+..+|+.
T Consensus 162 ~~D~v~~~~~~~ 173 (255)
T 3mb5_A 162 NVDHVILDLPQP 173 (255)
T ss_dssp SEEEEEECSSCG
T ss_pred CcCEEEECCCCH
Confidence 699999998875
No 120
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=96.82 E-value=0.0017 Score=66.40 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+-||.|.++..+.+.+ ..|+++|+++..+..++.++. +.++..++++|+.++.... ..+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~--------~~f 115 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNK--------LDF 115 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGG--------SCC
T ss_pred CCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCccc--------CCc
Confidence 346789999999999999999887 369999999999988887764 3456778999999886432 358
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|++.+|-+
T Consensus 116 D~Iv~NlPy~ 125 (295)
T 3gru_A 116 NKVVANLPYQ 125 (295)
T ss_dssp SEEEEECCGG
T ss_pred cEEEEeCccc
Confidence 9999998854
No 121
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.78 E-value=0.0012 Score=53.86 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=35.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
-....+.+|+.|||+++.|.+|+..+|. +++..++.|+.
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~ 66 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGG-DIEKATDWVFN 66 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 4566789999999999999999999996 88999999996
No 122
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=96.72 E-value=0.0016 Score=65.75 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=61.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+ +|+|+-||.|.++..+.+.|. .|+++|+++..+..++.++. ..+..++++|+.+++...+ ..+
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~~~~-------~~~ 111 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWEEV-------PQG 111 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCGGGS-------CTT
T ss_pred CCC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCChhhc-------cCc
Confidence 345 999999999999999999984 69999999999998887654 2356788999998875432 257
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|.|++.+|=+
T Consensus 112 ~~iv~NlPy~ 121 (271)
T 3fut_A 112 SLLVANLPYH 121 (271)
T ss_dssp EEEEEEECSS
T ss_pred cEEEecCccc
Confidence 9999998844
No 123
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=96.72 E-value=0.0037 Score=65.70 Aligned_cols=78 Identities=18% Similarity=0.061 Sum_probs=59.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC---CcccccccccccchhhHHHHHhccCC
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK---GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~---~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+|+|++||.|.+++.+.+.+-. ..|+++|+++.+++..+.|...++.. ...++.+|+.+... .+.
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~---------~~~ 292 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---------PFR 292 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC---------TTC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC---------CCC
Confidence 378999999999999999988421 36999999999999988887654422 23446777766321 147
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+..||..
T Consensus 293 fD~Ii~nppfh 303 (375)
T 4dcm_A 293 FNAVLCNPPFH 303 (375)
T ss_dssp EEEEEECCCC-
T ss_pred eeEEEECCCcc
Confidence 99999999974
No 124
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.71 E-value=0.0011 Score=52.75 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=34.9
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+++.+.||++..|..|.+.-+++|+....
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 13 LESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 67899999999999999999988899999999998654
No 125
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=96.65 E-value=0.0035 Score=69.10 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=66.5
Q ss_pred ccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHc----CC-------------ceeEEEeeccCHHHH
Q 008350 419 KSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRL----GV-------------RMKNVVSVDISEVNR 481 (569)
Q Consensus 419 k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~a----Gi-------------~~k~V~avEid~~A~ 481 (569)
+..|.+|....+...+..+. ....+.+|+|.+||.|||-+.+.+. +. ....++++|+++.+.
T Consensus 146 ~~~G~fyTP~~iv~~mv~~l-~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~ 224 (541)
T 2ar0_A 146 SGAGQYFTPRPLIKTIIHLL-KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR 224 (541)
T ss_dssp ----CCCCCHHHHHHHHHHH-CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred ccCCeeeCCHHHHHHHHHHh-ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence 45566776544321111111 1234679999999999998876542 10 012689999999999
Q ss_pred HHHHHHHhhcCCCC-----cccccccccccchhhHHHHHhccCCeeEEEEcCCCCcccc
Q 008350 482 NIVRSWWEQTNQKG-----TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAG 535 (569)
Q Consensus 482 ~t~~~n~~~~N~~~-----~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ 535 (569)
+..+.|....+... ..+.++|.-..... ..+.+|+|++-||......
T Consensus 225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~-------~~~~fD~Vv~NPPf~~~~~ 276 (541)
T 2ar0_A 225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-------NLPKAHIVATNPPFGSAAG 276 (541)
T ss_dssp HHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH-------TSCCEEEEEECCCCTTCSS
T ss_pred HHHHHHHHHhCCCccccccCCeEeCCCcccccc-------cccCCeEEEECCCcccccc
Confidence 98887765444433 45667775433211 1257999999999876544
No 126
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.64 E-value=0.0024 Score=53.42 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=35.8
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
....+..|+.|||+++.|.+|+..+|. |++..+|.|+..+
T Consensus 29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~g-dve~A~e~L~sh~ 68 (83)
T 1veg_A 29 SQESINQLVYMGFDTVVAEAALRVFGG-NVQLAAQTLAHHG 68 (83)
T ss_dssp CHHHHHHHHHHSCCHHHHHHHHHHTTT-CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCC
Confidence 457799999999999999999999996 5899999999754
No 127
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=96.63 E-value=0.0033 Score=60.15 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=61.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+.+.+.+..-. ..++++|+++.++...+.+....+.++..++.+|+.++. ..+. .+.+|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~~-~~~~d 110 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVFE-PGEVK 110 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHCC-TTSCC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCC-CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhcC-cCCcC
Confidence 3567999999999999999886211 368999999999998888776555666778889988743 1111 25689
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
.|+..+|+.
T Consensus 111 ~v~~~~~~p 119 (213)
T 2fca_A 111 RVYLNFSDP 119 (213)
T ss_dssp EEEEESCCC
T ss_pred EEEEECCCC
Confidence 998877754
No 128
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=96.63 E-value=0.0038 Score=61.41 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|.++..+.+.|. .|+++|+++.++..++.++.. .++..++.+|+.++.... ...+
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~-------~~~~ 96 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK-------NQSY 96 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS-------SCCC
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCccc-------CCCe
Confidence 3467899999999999999998873 699999999999988876532 245678899998875321 0233
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
.|++.+|=+
T Consensus 97 -~vv~nlPy~ 105 (244)
T 1qam_A 97 -KIFGNIPYN 105 (244)
T ss_dssp -EEEEECCGG
T ss_pred -EEEEeCCcc
Confidence 577777743
No 129
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=96.62 E-value=0.00077 Score=67.68 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=54.7
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc--C------C-CCcccccccccccchhhHHHHH
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT--N------Q-KGTLIDFADVQQLDANRIEQMI 515 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~--N------~-~~~~~~~~DI~~i~~~~l~~~~ 515 (569)
.+|||+|||.|..++-+.+.|. .|+++|+++.....++.+.... | . ....++++|..++... +
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~-~---- 161 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I---- 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-C----
T ss_pred CEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh-C----
Confidence 7899999999999999988885 4999999998766555543221 1 1 1244666776665321 1
Q ss_pred hccCCeeEEEEcCCCCc
Q 008350 516 NAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 516 ~~~g~~DlliGGpPCQ~ 532 (569)
...+|+|+..||=..
T Consensus 162 --~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 --TPRPQVVYLDPMFPH 176 (258)
T ss_dssp --SSCCSEEEECCCCCC
T ss_pred --cccCCEEEEcCCCCC
Confidence 136999999998643
No 130
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=96.60 E-value=0.0048 Score=60.93 Aligned_cols=70 Identities=10% Similarity=0.039 Sum_probs=55.5
Q ss_pred hhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccc
Q 008350 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLD 507 (569)
Q Consensus 437 lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~ 507 (569)
+....+.+.+|+|+-||.|-+++.+.+.|.. ..|+|+|+++.+.+..+.|...++..+ ..+..+|..+..
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 15 VANYVPKGARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHhCCCCCEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 3445566789999999999999999998743 579999999999999999987665543 556777766543
No 131
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.59 E-value=0.0027 Score=47.84 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=33.2
Q ss_pred CchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHH
Q 008350 132 PDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICA 173 (569)
Q Consensus 132 s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~a 173 (569)
++.++++..|+.|||++++|..|+.+|+.+ ++.-+++++.
T Consensus 6 ~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHH
T ss_pred ccCHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence 445789999999999999999999999985 5555676664
No 132
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.59 E-value=0.0029 Score=53.07 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=37.3
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
.....+.+|+.|||+++.|.+|+...|..+++..++.|+..
T Consensus 28 ~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 28 ANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46678999999999999999999999987899999999974
No 133
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=96.58 E-value=0.0064 Score=57.91 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=63.4
Q ss_pred CCCCcceeccccChhHHHHHHHHcCC----ceeEEEeeccCHHHHHHHHHHHhhcC-----CCCcccccccccccchhhH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGV----RMKNVVSVDISEVNRNIVRSWWEQTN-----QKGTLIDFADVQQLDANRI 511 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi----~~k~V~avEid~~A~~t~~~n~~~~N-----~~~~~~~~~DI~~i~~~~l 511 (569)
...+.+|||+.||.|.++..+.+.+. +-..|+++|+++.+.+..+.+....+ ..+..++.+|+.+......
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 44567899999999999998888642 11269999999999988888765544 3456678888887542111
Q ss_pred HHHHhccCCeeEEEEcCCCC
Q 008350 512 EQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 512 ~~~~~~~g~~DlliGGpPCQ 531 (569)
. ..+.+|+|+.+.++.
T Consensus 158 ~----~~~~fD~I~~~~~~~ 173 (227)
T 2pbf_A 158 K----ELGLFDAIHVGASAS 173 (227)
T ss_dssp H----HHCCEEEEEECSBBS
T ss_pred c----cCCCcCEEEECCchH
Confidence 1 125799999988775
No 134
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=96.58 E-value=0.0059 Score=60.06 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=53.9
Q ss_pred hhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccccc
Q 008350 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQ 504 (569)
Q Consensus 437 lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~ 504 (569)
+....+.+.+|+|+-||.|-+++.+.+.|.. ..|+|+|+++.+.+..+.|...++..+ ..+..+|..
T Consensus 9 l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l 76 (225)
T 3kr9_A 9 VASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL 76 (225)
T ss_dssp HHTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG
T ss_pred HHHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh
Confidence 3345566789999999999999999998743 579999999999999999987665543 456777774
No 135
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.58 E-value=0.0017 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++++|||+++.+.+|++..+. |.+.-++.|+.
T Consensus 8 i~~L~~MGF~~~~a~~AL~~~~~-n~e~A~~~L~~ 41 (43)
T 2g3q_A 8 VEELSGMGFTEEEAHNALEKCNW-DLEAATNFLLD 41 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhCc-CHHHHHHHHHc
Confidence 57899999999999999999965 99999999986
No 136
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=96.58 E-value=0.0044 Score=61.33 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=61.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|.++..+.+.|. .|+++|+++.+++..+.+....+. +..++.+|+.++.. . +.+|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---~------~~fD 186 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---Q------ENYD 186 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---C------SCEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---c------CCcc
Confidence 467899999999999999999986 589999999999988887665544 56778889887653 1 5789
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+...+..
T Consensus 187 ~i~~~~~~~ 195 (286)
T 3m70_A 187 FIVSTVVFM 195 (286)
T ss_dssp EEEECSSGG
T ss_pred EEEEccchh
Confidence 998876543
No 137
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.57 E-value=0.00085 Score=49.99 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=30.5
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++++|||+++.+.+|++..| |.+.-+|+|+.
T Consensus 13 v~~L~~MGF~~~~a~~AL~~~~--n~e~A~~~L~~ 45 (47)
T 2ekk_A 13 LQQLMDMGFTREHAMEALLNTS--TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHCCHHHHHHHHHHSC--SHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHcC--CHHHHHHHHHc
Confidence 5789999999999999999996 89999999986
No 138
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=96.54 E-value=0.0043 Score=61.48 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+.||.|.+++.+.+. |-. ..|+++|+++.+.+..+.+....+. ....++.+|+.+... .+
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~ 180 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD---------EK 180 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS---------CC
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc---------CC
Confidence 34678999999999999998887 422 3689999999999988887654433 235567788876521 14
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+..+|+.
T Consensus 181 ~~D~V~~~~~~~ 192 (277)
T 1o54_A 181 DVDALFLDVPDP 192 (277)
T ss_dssp SEEEEEECCSCG
T ss_pred ccCEEEECCcCH
Confidence 699999999876
No 139
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=96.53 E-value=0.0029 Score=58.34 Aligned_cols=70 Identities=21% Similarity=0.142 Sum_probs=54.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|.++..+.+.+ .|+++|+++.+++. .++..++.+|+.+.... +.+|
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~---------~~fD 80 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCSINQ---------ESVD 80 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCG---------GGCS
T ss_pred CCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhhccc---------CCCC
Confidence 34589999999999999999988 58999999998865 22456788998764321 3799
Q ss_pred EEEEcCCCCccc
Q 008350 523 LVIGGSPCNNLA 534 (569)
Q Consensus 523 lliGGpPCQ~fS 534 (569)
+|+..||-...+
T Consensus 81 ~i~~n~~~~~~~ 92 (170)
T 3q87_B 81 VVVFNPPYVPDT 92 (170)
T ss_dssp EEEECCCCBTTC
T ss_pred EEEECCCCccCC
Confidence 999998865433
No 140
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.52 E-value=0.0062 Score=55.60 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=59.5
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.+...+.+.|. .+.++|+++.+++..+.+ .++..++.+|+.++... .+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~-----~~~~~~~~~d~~~~~~~--------~~~ 107 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQD-----FPEARWVVGDLSVDQIS--------ETD 107 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTTSCCC--------CCC
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHh-----CCCCcEEEcccccCCCC--------CCc
Confidence 45678999999999999999999875 589999999998887765 33456778888876421 157
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|+|+..+++-.
T Consensus 108 ~D~i~~~~~~~~ 119 (195)
T 3cgg_A 108 FDLIVSAGNVMG 119 (195)
T ss_dssp EEEEEECCCCGG
T ss_pred eeEEEECCcHHh
Confidence 999998766644
No 141
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=96.52 E-value=0.0053 Score=58.43 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=61.4
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcC-----CCCcccccccccccchhhHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTN-----QKGTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N-----~~~~~~~~~DI~~i~~~~l~~~ 514 (569)
...+.+|||+.||.|+++..+.+. |-. ..|+++|+++...+..+.+....+ ..+..+..+|+......
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----- 148 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE----- 148 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-----
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-----
Confidence 445679999999999999988875 422 268999999999988887765432 23456777887754321
Q ss_pred HhccCCeeEEEEcCCCCc
Q 008350 515 INAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 515 ~~~~g~~DlliGGpPCQ~ 532 (569)
.+.+|+|+.+.||..
T Consensus 149 ---~~~fD~i~~~~~~~~ 163 (226)
T 1i1n_A 149 ---EAPYDAIHVGAAAPV 163 (226)
T ss_dssp ---GCCEEEEEECSBBSS
T ss_pred ---CCCcCEEEECCchHH
Confidence 157999999999864
No 142
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=96.52 E-value=0.0046 Score=59.81 Aligned_cols=84 Identities=11% Similarity=0.046 Sum_probs=64.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
...+|||+-||.|..++.+.+++-. ..|+++|+++.+.+..+.++...+.. ...++.+|+.+.....+ .+.+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDD-IHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTT-CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCc
Confidence 4568999999999999999984322 47999999999999999887766553 46788899887643111 1579
Q ss_pred eEEEEcCCCCcc
Q 008350 522 DLVIGGSPCNNL 533 (569)
Q Consensus 522 DlliGGpPCQ~f 533 (569)
|+|+...++..+
T Consensus 144 D~V~~~~~~~~~ 155 (232)
T 3ntv_A 144 DMIFIDAAKAQS 155 (232)
T ss_dssp EEEEEETTSSSH
T ss_pred cEEEEcCcHHHH
Confidence 999988877653
No 143
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=96.49 E-value=0.0065 Score=55.99 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|. .++++|+++.+.+..+.+....+.++..+..+|+.++.. . +.+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~------~~~D 99 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---D------RQYD 99 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---C------CCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---C------CCce
Confidence 346899999999999999999885 589999999999888877665555556778888887642 1 4688
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+....
T Consensus 100 ~v~~~~~ 106 (199)
T 2xvm_A 100 FILSTVV 106 (199)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 8886653
No 144
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=96.48 E-value=0.0027 Score=63.78 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=60.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-----------CCCCcccccccccccchhh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-----------NQKGTLIDFADVQQLDANR 510 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-----------N~~~~~~~~~DI~~i~~~~ 510 (569)
+.+.+|||+.||.|++...+.+.+. ..|.+||+++..++..+.++ .. +.+...++.+|+.++...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 4567899999999999999988753 57999999999999988876 32 234455677777654211
Q ss_pred HHHHHhccCCeeEEEEcCCCC
Q 008350 511 IEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpPCQ 531 (569)
.+.+|+|+..+|+.
T Consensus 150 -------~~~fD~Ii~d~~~~ 163 (281)
T 1mjf_A 150 -------NRGFDVIIADSTDP 163 (281)
T ss_dssp -------CCCEEEEEEECCCC
T ss_pred -------cCCeeEEEECCCCC
Confidence 25799999999873
No 145
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=96.48 E-value=0.018 Score=61.63 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=60.6
Q ss_pred CCcceeccccChhHHHHHHHHcC------------CceeEEEeeccCHHHHHHHHHHHhhcCCC--Ccccccccccccch
Q 008350 443 DGINVLSLFSGIGGAEVALHRLG------------VRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDA 508 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aG------------i~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~ 508 (569)
.+.+|+|..||.|++.+.+.+.- +.-..++++|+++.+.+..+.|....+.. ...+.++|......
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 45789999999999988776531 01135899999999998888776544443 34577788765542
Q ss_pred hhHHHHHhccCCeeEEEEcCCCCcccc
Q 008350 509 NRIEQMINAFGGFDLVIGGSPCNNLAG 535 (569)
Q Consensus 509 ~~l~~~~~~~g~~DlliGGpPCQ~fS~ 535 (569)
.+.+|+|++-||......
T Consensus 251 ---------~~~fD~Iv~NPPf~~~~~ 268 (445)
T 2okc_A 251 ---------STLVDVILANPPFGTRPA 268 (445)
T ss_dssp ---------SSCEEEEEECCCSSCCCT
T ss_pred ---------cCCcCEEEECCCCCCccc
Confidence 147999999999876543
No 146
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=96.47 E-value=0.0018 Score=63.18 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=37.6
Q ss_pred CCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
.+.+|+|++||.|.+.+.+.+. .. ...|+++|+++.+++..+.+..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHH
Confidence 4678999999999999988775 21 1479999999999988887654
No 147
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=96.46 E-value=0.0056 Score=60.73 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=59.6
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc-CCCCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+.||.|+++..+.+. +-. ..|+++|+++.+++..+.+.... +.++..++.+|+.+... .+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---------~~ 178 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQ 178 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC---------SC
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc---------CC
Confidence 45678999999999999998886 111 36899999999999888877544 44456678888876321 14
Q ss_pred CeeEEEEcCCC
Q 008350 520 GFDLVIGGSPC 530 (569)
Q Consensus 520 ~~DlliGGpPC 530 (569)
.+|+|+..+|-
T Consensus 179 ~fD~Vi~~~~~ 189 (275)
T 1yb2_A 179 MYDAVIADIPD 189 (275)
T ss_dssp CEEEEEECCSC
T ss_pred CccEEEEcCcC
Confidence 69999997763
No 148
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=96.46 E-value=0.0047 Score=57.59 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=61.7
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+.+|||+-||.|.+...+.+.|.. .++++|+++.+++..+.+... .++..+..+|+.++... .+
T Consensus 39 ~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~--------~~ 106 (215)
T 2pxx_A 39 ELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFP--------SA 106 (215)
T ss_dssp GCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSC--------SS
T ss_pred hcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCC--------CC
Confidence 3456789999999999999999999863 699999999999888876432 34566778888876421 15
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+..++..
T Consensus 107 ~fD~v~~~~~~~ 118 (215)
T 2pxx_A 107 SFDVVLEKGTLD 118 (215)
T ss_dssp CEEEEEEESHHH
T ss_pred cccEEEECcchh
Confidence 799999876643
No 149
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=96.44 E-value=0.0051 Score=58.47 Aligned_cols=83 Identities=25% Similarity=0.212 Sum_probs=62.8
Q ss_pred CCcceeccccChhHHHHHHHHc---CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL---GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a---Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+|||+.||.|+.++.+.++ +. .|+++|+++...+..+.++...+..+ ..++.+|+.+.... +. ...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~---~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ-IE---NEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH-HH---HTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH-HH---hcC
Confidence 3578999999999999999887 43 68999999999998888876655544 56778888654321 11 111
Q ss_pred -CCeeEEEEcCCCCc
Q 008350 519 -GGFDLVIGGSPCNN 532 (569)
Q Consensus 519 -g~~DlliGGpPCQ~ 532 (569)
+.+|+|+...+|..
T Consensus 131 ~~~fD~v~~d~~~~~ 145 (223)
T 3duw_A 131 YEPFDFIFIDADKQN 145 (223)
T ss_dssp CCCCSEEEECSCGGG
T ss_pred CCCcCEEEEcCCcHH
Confidence 46999999988765
No 150
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=96.43 E-value=0.00094 Score=49.99 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=34.3
Q ss_pred CChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 45 SSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 45 ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
++....|..|+.|||++..|.+|+..|| .|.+...+.|+.
T Consensus 2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 2 SQEKEAIERLKALGFPESLVIQAYFACE-KNENLAANFLLS 41 (47)
T ss_dssp -CCHHHHTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 3455678999999999999999999999 578889999874
No 151
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.43 E-value=0.0053 Score=55.92 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.++..+.+.+ ..++++|+++.+.+..+.+....+. +...+..+|+.+. ++ ..+.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~----~~~~ 100 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA----LC----KIPD 100 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH----HT----TSCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh----cc----cCCC
Confidence 456789999999999999999887 3799999999999988887654443 3445566666541 11 1247
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+.+.+..
T Consensus 101 ~D~v~~~~~~~ 111 (192)
T 1l3i_A 101 IDIAVVGGSGG 111 (192)
T ss_dssp EEEEEESCCTT
T ss_pred CCEEEECCchH
Confidence 99999887653
No 152
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=96.41 E-value=0.0039 Score=61.85 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|+|+.||.|.++..+.+.|. ..|+++|+++.++..++.+ ...+..++++|+.++....+. + ..
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~------~-~~ 97 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLG------K-EL 97 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSC------S-SE
T ss_pred CcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHcc------C-Cc
Confidence 467899999999999999999863 4699999999999887754 233457889999988754321 2 34
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
.|++.+|=+
T Consensus 98 ~vv~NlPy~ 106 (249)
T 3ftd_A 98 KVVGNLPYN 106 (249)
T ss_dssp EEEEECCTT
T ss_pred EEEEECchh
Confidence 788888864
No 153
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.39 E-value=0.0046 Score=71.84 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=68.2
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccccc-------C------------CCCChhHHHHHHHhCCCCHH
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASS-------S------------ASSSKSKLIDHFVGMGFSVD 62 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~-------~------------~~ss~~~~~~~~~~MGF~~~ 62 (569)
++++++||||+....||+...|..|.+.-.+.|+..-... . +++.....+..+..|||+.+
T Consensus 656 l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~ 735 (854)
T 3ihp_A 656 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRD 735 (854)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHH
T ss_pred HHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHH
Confidence 5678999999999999999999999999999888753320 0 02345567899999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHH
Q 008350 63 MVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 63 ~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.+.+|+++.+. +++..+|.|.+
T Consensus 736 ~a~~aL~~t~~-~~eraidwlfs 757 (854)
T 3ihp_A 736 QALKALRATNN-SLERAVDWIFS 757 (854)
T ss_dssp HHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHHhhcC-cHHHHHHhhhc
Confidence 99999999986 67888998886
No 154
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.37 E-value=0.0032 Score=52.96 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=32.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
..++.+|+.|||+++.|.+|+.. +..+++..++.|++
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~-~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKS-NNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH-TTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 56688999999999999999954 44578999999996
No 155
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=96.36 E-value=0.0075 Score=57.49 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=59.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+.||.|.++..+.+.+ ..|+++|+++.+.+..+.+....+ +..++.+|+.+.... .+.+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~--------~~~f 135 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEE--------EKPY 135 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGG--------GCCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCccccccc--------CCCc
Confidence 346789999999999999999987 369999999999988887754332 456778888763221 1579
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+...++..
T Consensus 136 D~v~~~~~~~~ 146 (231)
T 1vbf_A 136 DRVVVWATAPT 146 (231)
T ss_dssp EEEEESSBBSS
T ss_pred cEEEECCcHHH
Confidence 99998877654
No 156
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.32 E-value=0.004 Score=52.11 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=35.3
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
.....+.+|+.|||+++.|.+|+..++ .+++..++.|+..
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHC
Confidence 456778999999999999999999995 4789999999974
No 157
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=96.31 E-value=0.0045 Score=70.39 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=74.0
Q ss_pred CCCcceeccccChhHHHHHHHHcC------Cc-----------------------------------eeEEEeeccCHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG------VR-----------------------------------MKNVVSVDISEVN 480 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG------i~-----------------------------------~k~V~avEid~~A 480 (569)
+.+.+++|.|||.|++.+.+...+ +. -..++++|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 346789999999999987555421 10 0258999999999
Q ss_pred HHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCeeEEEEcCCCCccccCCCCCCCCCCCCccchHHHHHHHH
Q 008350 481 RNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRIL 559 (569)
Q Consensus 481 ~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ~fS~ag~~kr~Gl~d~r~~Lf~~~~rII 559 (569)
++..+.|....+..+ ..+..+|+.++.... ..+.+|+|+..||= |. |.|....-..||..+.+++
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY------G~--Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY------GE--RLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC------CC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc------cc--cccchhHHHHHHHHHHHHH
Confidence 999999987665544 457788888774211 01379999999995 22 3222222345788888887
Q ss_pred HHhccc
Q 008350 560 DLVKNM 565 (569)
Q Consensus 560 ~~vrPk 565 (569)
+...|-
T Consensus 335 k~~~~g 340 (703)
T 3v97_A 335 KNQFGG 340 (703)
T ss_dssp HHHCTT
T ss_pred HhhCCC
Confidence 776553
No 158
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.31 E-value=0.0018 Score=50.88 Aligned_cols=37 Identities=41% Similarity=0.713 Sum_probs=33.3
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|+.+++|||+.+.+.||+|..|. |.+..+|.|.+...
T Consensus 23 V~~LvsMGFs~~qA~kALKat~~-NvErAaDWLFSH~D 59 (63)
T 1wgn_A 23 VETVVNMGYSYECVLRAMKKKGE-NIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCS-CHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 56789999999999999999977 99999999998544
No 159
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=96.30 E-value=0.0053 Score=58.62 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.++..+.+. |-. ..|+++|+++.+++.++.+.... ++..++.+|+.+...- .. ..+.
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~--~~---~~~~ 143 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEY--RA---LVPK 143 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGG--TT---TCCC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchh--hc---ccCC
Confidence 34678999999999999998865 321 36899999999887777665432 5667888998874310 00 0146
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+..+|
T Consensus 144 ~D~v~~~~~ 152 (227)
T 1g8a_A 144 VDVIFEDVA 152 (227)
T ss_dssp EEEEEECCC
T ss_pred ceEEEECCC
Confidence 999998876
No 160
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=96.30 E-value=0.0086 Score=59.67 Aligned_cols=70 Identities=1% Similarity=-0.136 Sum_probs=55.1
Q ss_pred hhccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccc
Q 008350 437 LKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLD 507 (569)
Q Consensus 437 lk~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~ 507 (569)
+....+.+.+|+|+-||.|-+++.+.+.|.. ..|+|+|+++.+.+..+.|...++..+ ..+..+|..+..
T Consensus 15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~ 85 (244)
T 3gnl_A 15 VASYITKNERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI 85 (244)
T ss_dssp HHTTCCSSEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHhCCCCCEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence 3445566789999999999999999998743 579999999999999999987665543 456777765543
No 161
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=96.30 E-value=0.0075 Score=58.28 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=61.6
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc-CCCCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT-NQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~-N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+.||.|.++..+.+. |-. ..|+++|+++.+.+..+.++... +.+...+..+|+.+.... .+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~--------~~ 165 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE--------EA 165 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC--------TT
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC--------CC
Confidence 45678999999999999999887 311 36999999999999888876554 444566778888876211 14
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+..+|+.
T Consensus 166 ~~D~v~~~~~~~ 177 (258)
T 2pwy_A 166 AYDGVALDLMEP 177 (258)
T ss_dssp CEEEEEEESSCG
T ss_pred CcCEEEECCcCH
Confidence 799999988765
No 162
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.30 E-value=0.0023 Score=50.92 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=34.0
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHS 38 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~ 38 (569)
|.++++|||+++.+.||+...|..|.+.-+|.|+...
T Consensus 23 i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 23 LDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 6789999999999999999998889999999999754
No 163
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=96.26 E-value=0.0029 Score=69.98 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=59.6
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..++++|||+=||.|-++..|.+.|. .|.++|.++.++++.+.+....+..+..+.++|+.++.... ..+.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~ 134 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL------EEGE 134 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC------CTTS
T ss_pred cCCCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc------cCCC
Confidence 35678999999999999999999996 58999999999999998876544334556677776653210 1257
Q ss_pred eeEEEEc
Q 008350 521 FDLVIGG 527 (569)
Q Consensus 521 ~DlliGG 527 (569)
||+|++-
T Consensus 135 fD~v~~~ 141 (569)
T 4azs_A 135 FDLAIGL 141 (569)
T ss_dssp CSEEEEE
T ss_pred ccEEEEC
Confidence 9999863
No 164
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.25 E-value=0.0036 Score=51.18 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=33.3
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+++.|.+|++..+. |.+.-+|+|+.-+.
T Consensus 33 I~~L~eMGF~r~~a~~AL~~~~~-nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 33 IQKLVAMGFDRTQVEVALAAADD-DLTVAVEILMSQSG 69 (73)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTS-CHHHHHHHHHTCSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHCCC
Confidence 67899999999999999999976 99999999998543
No 165
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=96.25 E-value=0.0081 Score=56.81 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=56.4
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHHHHhc--
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQMINA-- 517 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~~~~~-- 517 (569)
+..+.+||||.||.|+++..+.+.+. .|+++|+++.+ ..++..++.+|+++.... .+...+..
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 88 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG 88 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence 34578999999999999999988853 69999998742 235677889999887532 23332220
Q ss_pred cCCeeEEEEcCCCC
Q 008350 518 FGGFDLVIGGSPCN 531 (569)
Q Consensus 518 ~g~~DlliGGpPCQ 531 (569)
.+.+|+|+..+|++
T Consensus 89 ~~~~D~Vlsd~~~~ 102 (191)
T 3dou_A 89 IEKVDDVVSDAMAK 102 (191)
T ss_dssp CSSEEEEEECCCCC
T ss_pred CCcceEEecCCCcC
Confidence 13899999998765
No 166
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.24 E-value=0.0079 Score=45.91 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSA 88 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~ 88 (569)
....+..|.+|++|||+.+.|.+|+...+. |++..-..|+.+..
T Consensus 6 ~~~~e~~I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef~~ 49 (53)
T 2d9s_A 6 SGQLSSEIERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREFSG 49 (53)
T ss_dssp CSCSHHHHHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHhcc
Confidence 334445599999999999999999999986 67888888887643
No 167
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=96.23 E-value=0.0085 Score=58.61 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+.+.+|||+-||.|.+...+.+.+. ..|+++|+++.+++..+.+....+.+ ...++.+|+.++... .+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~ 113 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR--------NE 113 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC--------CC
Confidence 34578899999999999999998853 37999999999998888776555443 366888999877521 15
Q ss_pred CeeEEEEcCCCCc
Q 008350 520 GFDLVIGGSPCNN 532 (569)
Q Consensus 520 ~~DlliGGpPCQ~ 532 (569)
.+|+|+...+...
T Consensus 114 ~fD~i~~~~~~~~ 126 (267)
T 3kkz_A 114 ELDLIWSEGAIYN 126 (267)
T ss_dssp CEEEEEESSCGGG
T ss_pred CEEEEEEcCCcee
Confidence 7999998766543
No 168
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.23 E-value=0.0024 Score=52.35 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=34.8
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+++.+.||+...|..|.+.-+|+|+....
T Consensus 13 v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 13 IIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 67899999999999999999998899999999998654
No 169
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=96.23 E-value=0.0035 Score=61.92 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|+|+.||.|..++.+....-. ..|+++|+++.+++.++.|....+..++.++++|+.++..... ..+.|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~-----~~~~f 152 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAG-----HREAY 152 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTT-----TTTCE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccc-----cCCCc
Confidence 35678999999999988888775211 3689999999999999988776666667788888877653210 01479
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 153 D~I~s 157 (249)
T 3g89_A 153 ARAVA 157 (249)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 99986
No 170
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=96.23 E-value=0.013 Score=54.60 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=55.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+ +|||+-||.|.+...+.+.|. .++++|+++.+++..+.+....+. +..+..+|+.++... .+.+
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~--------~~~f 95 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIV--------ADAW 95 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCC--------TTTC
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCC--------cCCc
Confidence 445 999999999999999999885 589999999998888776654332 456777888776421 1468
Q ss_pred eEEEEc
Q 008350 522 DLVIGG 527 (569)
Q Consensus 522 DlliGG 527 (569)
|+|+..
T Consensus 96 D~v~~~ 101 (202)
T 2kw5_A 96 EGIVSI 101 (202)
T ss_dssp SEEEEE
T ss_pred cEEEEE
Confidence 888863
No 171
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=96.22 E-value=0.008 Score=57.76 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+.||.|+++..+.+. |-. ..|+++|+++.+...+..+.... ++..++.+|+.+...-.. ..+.
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~-----~~~~ 147 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRM-----LIAM 147 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGG-----GCCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcc-----cCCc
Confidence 34678999999999999988875 211 36899999988766555544332 456788899887431110 1257
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+..+|
T Consensus 148 ~D~V~~~~~ 156 (233)
T 2ipx_A 148 VDVIFADVA 156 (233)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999776
No 172
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.21 E-value=0.0022 Score=67.13 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|+|+.||.|++.+.+.+. +.. ..++++|+++.+.+.. ....++++|+.+.... +.+
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~---------~~f 99 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWAEGILADFLLWEPG---------EAF 99 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCS---------SCE
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCCcEEeCChhhcCcc---------CCC
Confidence 4568999999999999988863 111 3699999999876432 2345778888776421 479
Q ss_pred eEEEEcCCCCcccc
Q 008350 522 DLVIGGSPCNNLAG 535 (569)
Q Consensus 522 DlliGGpPCQ~fS~ 535 (569)
|+|++.||......
T Consensus 100 D~Ii~NPPy~~~~~ 113 (421)
T 2ih2_A 100 DLILGNPPYGIVGE 113 (421)
T ss_dssp EEEEECCCCCCBSC
T ss_pred CEEEECcCccCccc
Confidence 99999999976554
No 173
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=96.21 E-value=0.0099 Score=57.38 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=61.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+.+|||+-||.|.+...+.+.+. ..|+++|+++.++...+.+....+.++ ..++.+|+.++... .+.
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 114 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQ--------NEE 114 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSC--------TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCC--------CCC
Confidence 4567899999999999999998864 279999999999998888766555444 56788999777522 157
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+......
T Consensus 115 fD~v~~~~~l~ 125 (257)
T 3f4k_A 115 LDLIWSEGAIY 125 (257)
T ss_dssp EEEEEEESCSC
T ss_pred EEEEEecChHh
Confidence 99998775443
No 174
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=96.20 E-value=0.0072 Score=57.38 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=60.1
Q ss_pred CcceeccccChhHHHHHHHHc---CCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhcc-
Q 008350 444 GINVLSLFSGIGGAEVALHRL---GVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAF- 518 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a---Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~- 518 (569)
+.+|||+.||.|..++.+.+. + ..|+++|+++.+.+..+.++...+..+ ..++.+|+.+.... +....
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~~ 137 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKD---GTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAE----LIHAGQ 137 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH----HHTTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHH----hhhccC
Confidence 468999999999999999886 4 369999999999998888876655543 56777887654321 11111
Q ss_pred -CCeeEEEEcCCCC
Q 008350 519 -GGFDLVIGGSPCN 531 (569)
Q Consensus 519 -g~~DlliGGpPCQ 531 (569)
+.+|+|+..++..
T Consensus 138 ~~~fD~v~~~~~~~ 151 (225)
T 3tr6_A 138 AWQYDLIYIDADKA 151 (225)
T ss_dssp TTCEEEEEECSCGG
T ss_pred CCCccEEEECCCHH
Confidence 5799999887754
No 175
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=96.18 E-value=0.0085 Score=57.80 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=60.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.++..+.+.+. .++++|+++.+.+..+.+....+.++..+..+|+.++... .+.+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 88 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP--------DDSF 88 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC--------TTCE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCC--------CCcE
Confidence 4567899999999999999998874 6899999999998888776555555667788888776421 1468
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+.....
T Consensus 89 D~v~~~~~l 97 (239)
T 1xxl_A 89 DIITCRYAA 97 (239)
T ss_dssp EEEEEESCG
T ss_pred EEEEECCch
Confidence 998876543
No 176
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=96.17 E-value=0.012 Score=55.69 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=54.6
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-----CcccccccccccchhhHHHHHhc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-----GTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-----~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
.+.+|||+-||.|.+...+.+.+-. ..++++|+++.+++..+.++...+.+ +..++.+|+......
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-------- 99 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR-------- 99 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG--------
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc--------
Confidence 4568999999999999999987642 47999999999999888776543332 455677777544321
Q ss_pred cCCeeEEEEc
Q 008350 518 FGGFDLVIGG 527 (569)
Q Consensus 518 ~g~~DlliGG 527 (569)
.+.+|+|+..
T Consensus 100 ~~~fD~v~~~ 109 (217)
T 3jwh_A 100 FHGYDAATVI 109 (217)
T ss_dssp GCSCSEEEEE
T ss_pred CCCcCEEeeH
Confidence 1356666644
No 177
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.16 E-value=0.0041 Score=63.10 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=59.4
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhh----cCCCCcccccccccccchhhHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQ----TNQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~----~N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
+.+.+|||+.||.|++...+.+. +. ..|.++|+++.+++..+.|+.. .+.+...++.+|+.+....
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------- 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------- 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG-------
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-------
Confidence 45678999999999999998876 33 4799999999999998887643 1235566778887664321
Q ss_pred ccCCeeEEEEcCCCC
Q 008350 517 AFGGFDLVIGGSPCN 531 (569)
Q Consensus 517 ~~g~~DlliGGpPCQ 531 (569)
..+.+|+|+..+||.
T Consensus 160 ~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 160 FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSSCEEEEEEEC---
T ss_pred CCCCceEEEEcCCCc
Confidence 125799999999875
No 178
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=96.15 E-value=0.011 Score=56.04 Aligned_cols=75 Identities=23% Similarity=0.167 Sum_probs=57.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc------------CCCCcccccccccccchh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT------------NQKGTLIDFADVQQLDAN 509 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~------------N~~~~~~~~~DI~~i~~~ 509 (569)
+.+.+|||+=||.|..+.-|.+.|. .|+++|+++.+++.++...... ..++..++++|+.++...
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 4567899999999999999999886 5899999999998887653210 134567889999988743
Q ss_pred hHHHHHhccCCeeEEEE
Q 008350 510 RIEQMINAFGGFDLVIG 526 (569)
Q Consensus 510 ~l~~~~~~~g~~DlliG 526 (569)
.. +.||+|+.
T Consensus 98 ~~-------~~fD~v~~ 107 (203)
T 1pjz_A 98 DI-------GHCAAFYD 107 (203)
T ss_dssp HH-------HSEEEEEE
T ss_pred cC-------CCEEEEEE
Confidence 21 36899985
No 179
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=96.15 E-value=0.009 Score=60.18 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=57.9
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+.||.|.+...+.+. |. .|+++|+++.+++..+.+....+.. +..++.+|+.++... .+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~ 184 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD--------KG 184 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC--------TT
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC--------CC
Confidence 45678999999999999999887 74 5899999999998888776655443 466788998876421 14
Q ss_pred CeeEEEEc
Q 008350 520 GFDLVIGG 527 (569)
Q Consensus 520 ~~DlliGG 527 (569)
.+|+|+..
T Consensus 185 ~fD~V~~~ 192 (312)
T 3vc1_A 185 AVTASWNN 192 (312)
T ss_dssp CEEEEEEE
T ss_pred CEeEEEEC
Confidence 68888753
No 180
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=96.14 E-value=0.0042 Score=60.20 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~~~~~~g~~ 521 (569)
.+.+|||+-||.|.+++.+.+..-. ..|+++|+++.+++.++.+....+.++..++.+|+.++... .. .+.+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~------~~~f 142 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDV------RESY 142 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTT------TTCE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccc------cCCc
Confidence 4578999999999988888753211 36899999999999888887666665677888888766421 00 1479
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+...
T Consensus 143 D~V~~~~ 149 (240)
T 1xdz_A 143 DIVTARA 149 (240)
T ss_dssp EEEEEEC
T ss_pred cEEEEec
Confidence 9999754
No 181
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=96.13 E-value=0.01 Score=56.91 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.+...+.+.+ ..++++|+++.+.+..+.+....+. +...+..+|+.+.... .+.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 158 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVA---GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP--------EGI 158 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC--------TTC
T ss_pred CCCCEEEEeCCCccHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC--------CCc
Confidence 346789999999999999888875 3689999999999988887654443 3455677888765411 147
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+..+|
T Consensus 159 ~D~v~~~~~ 167 (248)
T 2yvl_A 159 FHAAFVDVR 167 (248)
T ss_dssp BSEEEECSS
T ss_pred ccEEEECCc
Confidence 999999777
No 182
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=96.12 E-value=0.0056 Score=57.71 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=60.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+.+.+..-..++++|+++.+++..+.+....+.++..++.+|+.++... .+.+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~f 107 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP--------DNTV 107 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC--------SSCE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC--------CCCe
Confidence 45678999999999999999887511136999999999998888877666656677888898876421 1468
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+...
T Consensus 108 D~v~~~~ 114 (219)
T 3dh0_A 108 DFIFMAF 114 (219)
T ss_dssp EEEEEES
T ss_pred eEEEeeh
Confidence 9888654
No 183
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=96.07 E-value=0.0068 Score=58.69 Aligned_cols=82 Identities=6% Similarity=0.112 Sum_probs=60.2
Q ss_pred CcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC--CcccccccccccchhhHHHHHhccCC
Q 008350 444 GINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK--GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~--~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+|||+.||.|..++.+.++ +-. ..|+++|+++...+..+.++...+.. ...++.+|+.++... +. .+.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~-~~-----~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR-LA-----NDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG-SC-----TTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH-hc-----CCC
Confidence 348999999999999998874 111 36899999999999999888765554 356777887765421 10 157
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
||+|+...+...
T Consensus 130 fD~V~~d~~~~~ 141 (221)
T 3dr5_A 130 YQLVFGQVSPMD 141 (221)
T ss_dssp EEEEEECCCTTT
T ss_pred cCeEEEcCcHHH
Confidence 999998776543
No 184
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=96.07 E-value=0.015 Score=52.68 Aligned_cols=81 Identities=14% Similarity=0.046 Sum_probs=57.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+|+.||.|.++..+.+..-. ..|+++|+++.+++..+.+....+.+ +. ++.+|+.+.... ..+.
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~-------~~~~ 94 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD-------VPDN 94 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSS-EEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG-------CCSC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc-------cCCC
Confidence 34678999999999999998877211 46899999999999888877655554 33 566676432211 0157
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+.+.+..
T Consensus 95 ~D~i~~~~~~~ 105 (178)
T 3hm2_A 95 PDVIFIGGGLT 105 (178)
T ss_dssp CSEEEECC-TT
T ss_pred CCEEEECCccc
Confidence 99999777654
No 185
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=96.06 E-value=0.007 Score=63.68 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-----C---CcccccccccccchhhHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-----K---GTLIDFADVQQLDANRIEQ 513 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-----~---~~~~~~~DI~~i~~~~l~~ 513 (569)
+.+-+||++++|.|++..-+.+.+. +.|.+||+|+..++..+.|+...+. + ...++.+|..++..+..
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~--~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~-- 262 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA-- 262 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH--
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhh--
Confidence 4678999999999999998877764 5799999999999999988753321 1 35677888877653211
Q ss_pred HHhccCCeeEEEEcCCC
Q 008350 514 MINAFGGFDLVIGGSPC 530 (569)
Q Consensus 514 ~~~~~g~~DlliGGpPC 530 (569)
...+.+|+|+..+|=
T Consensus 263 --~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 263 --KEGREFDYVINDLTA 277 (364)
T ss_dssp --HHTCCEEEEEEECCS
T ss_pred --ccCCCceEEEECCCC
Confidence 112579999999864
No 186
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.0082 Score=47.45 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICAAQ 175 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~aaq 175 (569)
.++++..|+.|||++++|..|+.+|+.+ ++.-++.++...
T Consensus 9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~ 48 (63)
T 2dak_A 9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 3578999999999999999999999985 788888888755
No 187
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=96.06 E-value=0.014 Score=55.20 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=47.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-----Cccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-----GTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-----~~~~~~~DI~~i 506 (569)
.+.+|||+-||.|.+...+.+.+-. ..++++|+++.+++..+.++...+.+ +..++.+|+...
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYR 96 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSC
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccc
Confidence 4578999999999999999987742 47899999999999888776443322 355667776544
No 188
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=96.05 E-value=0.0045 Score=60.68 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=61.7
Q ss_pred CCcceeccccChhHHHHHHHHc---CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHRL---GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a---Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+|||+.||.|+.++.+.+. + ..|+++|+++...+..+.++...+.. ...++.+|+.+..... ...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~-----~~~ 134 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPAD---GQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL-----GEC 134 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTT---CEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC-----CSC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCC---CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc-----CCC
Confidence 3578999999999999999886 4 36999999999999988887765554 3567778876543210 112
Q ss_pred CCeeEEEEcCCCCc
Q 008350 519 GGFDLVIGGSPCNN 532 (569)
Q Consensus 519 g~~DlliGGpPCQ~ 532 (569)
+.+|+|+...++..
T Consensus 135 ~~fD~V~~d~~~~~ 148 (248)
T 3tfw_A 135 PAFDLIFIDADKPN 148 (248)
T ss_dssp CCCSEEEECSCGGG
T ss_pred CCeEEEEECCchHH
Confidence 47999998888765
No 189
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=96.01 E-value=0.013 Score=55.24 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=60.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+-||.|.++..+.+.+..-..|+++|+++...+..+.++...+.++..+..+|+...... .+.+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 147 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP--------LAPY 147 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG--------GCCE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC--------CCCe
Confidence 45678999999999999988886521136899999999998888776555555566777887543221 1579
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+...++..
T Consensus 148 D~v~~~~~~~~ 158 (215)
T 2yxe_A 148 DRIYTTAAGPK 158 (215)
T ss_dssp EEEEESSBBSS
T ss_pred eEEEECCchHH
Confidence 99998877653
No 190
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.00 E-value=0.0056 Score=46.81 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=32.6
Q ss_pred ccccccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHhcc
Q 008350 2 IDHFVGMGF-SEEVVAKAIQENGEQNTDLILEALLKHS 38 (569)
Q Consensus 2 ~~~~~~MGf-~~~~v~k~i~e~g~~~~~~ile~ll~~~ 38 (569)
|.++++||| +++.+.+|++..|. |.+.-+|+|+...
T Consensus 15 l~~L~~MGF~~~~~~~~AL~~t~g-nve~Ave~L~~~~ 51 (53)
T 2knz_A 15 LEQLNSMGFINREANLQALIATGG-DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHHcC
Confidence 568999999 99999999999987 9999999999743
No 191
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=95.99 E-value=0.013 Score=57.54 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc-C--CCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT-N--QKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~-N--~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+|||+.||.|.++..+.+. |-. ..|+++|+++.+.+..+.+.... + ..+..+..+|+.+....
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~-------- 168 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP-------- 168 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC--------
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCC--------
Confidence 45678999999999999999884 211 36999999999999888876544 3 34566788888876421
Q ss_pred cCCeeEEEEcCCCC
Q 008350 518 FGGFDLVIGGSPCN 531 (569)
Q Consensus 518 ~g~~DlliGGpPCQ 531 (569)
.+.+|+|+..+|..
T Consensus 169 ~~~~D~v~~~~~~~ 182 (280)
T 1i9g_A 169 DGSVDRAVLDMLAP 182 (280)
T ss_dssp TTCEEEEEEESSCG
T ss_pred CCceeEEEECCcCH
Confidence 14799999987743
No 192
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=95.99 E-value=0.0054 Score=61.52 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
+.+.+|||+.||.|++...+.+. |. ..|.+||+++.+++..+.|+... +.+...++.+|..+....
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~------- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK------- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT-------
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh-------
Confidence 56788999999999999988876 43 57999999999999999886431 234566788887654211
Q ss_pred ccCCeeEEEEcCCC
Q 008350 517 AFGGFDLVIGGSPC 530 (569)
Q Consensus 517 ~~g~~DlliGGpPC 530 (569)
..+.+|+|+.++|.
T Consensus 145 ~~~~fD~Ii~d~~~ 158 (275)
T 1iy9_A 145 SENQYDVIMVDSTE 158 (275)
T ss_dssp CCSCEEEEEESCSS
T ss_pred CCCCeeEEEECCCC
Confidence 12579999999876
No 193
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=95.98 E-value=0.011 Score=55.80 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=58.9
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-----CcccccccccccchhhHHHH
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-----GTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-----~~~~~~~DI~~i~~~~l~~~ 514 (569)
..+.+.+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+....+.. ...+..+|+.++...
T Consensus 27 ~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----- 98 (235)
T 3sm3_A 27 YLQEDDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH----- 98 (235)
T ss_dssp HCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC-----
T ss_pred hCCCCCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC-----
Confidence 345678999999999999999999985 5899999999998888765433221 234667787766421
Q ss_pred HhccCCeeEEEEcCCC
Q 008350 515 INAFGGFDLVIGGSPC 530 (569)
Q Consensus 515 ~~~~g~~DlliGGpPC 530 (569)
.+.+|+|+.....
T Consensus 99 ---~~~~D~v~~~~~l 111 (235)
T 3sm3_A 99 ---DSSFDFAVMQAFL 111 (235)
T ss_dssp ---TTCEEEEEEESCG
T ss_pred ---CCceeEEEEcchh
Confidence 1578999876443
No 194
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=95.98 E-value=0.011 Score=44.84 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 49 KLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 49 ~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
..|.+|++|||+.+.|.+|+...+. |++..-..|+.|
T Consensus 13 ~~Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLMGEGYAFEEVKRALEIAQN-NVEVARSILREF 49 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHHh
Confidence 6799999999999999999999986 668777777765
No 195
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=95.97 E-value=0.015 Score=55.95 Aligned_cols=71 Identities=25% Similarity=0.252 Sum_probs=54.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+.||.|.++..+.+.|. .|+++|+++.+++..+.+....+. ...++.+|+.++... +.+|
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~---------~~fD 107 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEFD 107 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC---------CCcc
Confidence 457899999999999999999886 589999999999888877654332 456777888765421 3577
Q ss_pred EEEE
Q 008350 523 LVIG 526 (569)
Q Consensus 523 lliG 526 (569)
+|+.
T Consensus 108 ~v~~ 111 (252)
T 1wzn_A 108 AVTM 111 (252)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 196
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=95.97 E-value=0.0093 Score=55.73 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=56.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+|+|+.||.|.++..+.+..-. ..++++|+++.+++..+.+....+.++..++.+|+.++... +.+|+
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~D~ 135 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSE---------PPFDG 135 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCC---------SCEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCcc---------CCcCE
Confidence 568999999999999988875211 36899999999999888877665555567788888876521 47999
Q ss_pred EEE
Q 008350 524 VIG 526 (569)
Q Consensus 524 liG 526 (569)
|+.
T Consensus 136 i~~ 138 (207)
T 1jsx_A 136 VIS 138 (207)
T ss_dssp EEC
T ss_pred EEE
Confidence 985
No 197
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=95.96 E-value=0.0098 Score=44.23 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=31.7
Q ss_pred hHHHHHHHhCCCC-HHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 48 SKLIDHFVGMGFS-VDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 48 ~~~~~~~~~MGF~-~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
...+.+|++|||+ ++.+.+|+..++. |++..+|.|+.
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~ 45 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence 4568999999996 6778999999995 78999999984
No 198
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=95.95 E-value=0.013 Score=56.36 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=59.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+.||.|.++..+.+.+- ..|+++|+++.+++..+.+....+..+..+..+|+..-... .+.+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 159 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP--------KAPY 159 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG--------GCCE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC--------CCCc
Confidence 3467899999999999999888652 36899999999998888877655555566777887221111 1359
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+...++..
T Consensus 160 D~Ii~~~~~~~ 170 (235)
T 1jg1_A 160 DVIIVTAGAPK 170 (235)
T ss_dssp EEEEECSBBSS
T ss_pred cEEEECCcHHH
Confidence 99998876653
No 199
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.95 E-value=0.0083 Score=50.20 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=36.5
Q ss_pred CchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 008350 132 PDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICAAQ 175 (569)
Q Consensus 132 s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~aaq 175 (569)
...++++..|+.|||++++|..|+.+++.+ ++.=+++++.-+
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~ 68 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG 68 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence 335789999999999999999999999987 777788888755
No 200
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=95.93 E-value=0.006 Score=58.25 Aligned_cols=90 Identities=16% Similarity=0.072 Sum_probs=62.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|..++.+.++--+-..|+++|+++.+.+..+.|+...+..+ ..++.+|+.++... +..- ...+.+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~-~~~~-~~~~~f 135 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQ-LKKK-YDVDTL 135 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG-TTTT-SCCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHH-HHHh-cCCCce
Confidence 35689999999999999998841001368999999999999888876655432 55778887664321 1100 001479
Q ss_pred eEEEEcCCCCccc
Q 008350 522 DLVIGGSPCNNLA 534 (569)
Q Consensus 522 DlliGGpPCQ~fS 534 (569)
|+|+...++..+.
T Consensus 136 D~V~~d~~~~~~~ 148 (221)
T 3u81_A 136 DMVFLDHWKDRYL 148 (221)
T ss_dssp SEEEECSCGGGHH
T ss_pred EEEEEcCCcccch
Confidence 9999988776543
No 201
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=95.93 E-value=0.016 Score=53.95 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=55.5
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+.+|||+-||.|.+...+.+.|. .++++|+++.+++..+.+ .++..++.+|+.++... .+.+|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~--------~~~fD~ 105 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDS--------PKRWAG 105 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGS--------CCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccC--------CCCeEE
Confidence 67899999999999999999986 589999999998877754 44567888998876421 157999
Q ss_pred EEEcC
Q 008350 524 VIGGS 528 (569)
Q Consensus 524 liGGp 528 (569)
|+...
T Consensus 106 v~~~~ 110 (203)
T 3h2b_A 106 LLAWY 110 (203)
T ss_dssp EEEES
T ss_pred EEehh
Confidence 98754
No 202
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=95.93 E-value=0.022 Score=53.46 Aligned_cols=71 Identities=25% Similarity=0.257 Sum_probs=54.4
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+.+|||+-||.|.+...+.+.|. .++++|+++.++...+.+. +..+..+|+.++.. .+
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~ 101 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------ID 101 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CS
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CC
Confidence 344567899999999999999999985 5899999999988877653 24466777777651 14
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 102 ~fD~v~~~~ 110 (211)
T 3e23_A 102 AYDAVWAHA 110 (211)
T ss_dssp CEEEEEECS
T ss_pred cEEEEEecC
Confidence 678887654
No 203
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=95.92 E-value=0.012 Score=56.10 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=56.9
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
....+.+.+|||+-||.|.+...+.+.|. .|.++|+++.+.+..+.+. ..++..++.+|+.++...
T Consensus 48 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~-------- 113 (242)
T 3l8d_A 48 EQYVKKEAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFE-------- 113 (242)
T ss_dssp HHHSCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSC--------
T ss_pred HHHcCCCCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCC--------
Confidence 33445678999999999999999999985 5899999999988877542 234556778888876421
Q ss_pred cCCeeEEEEc
Q 008350 518 FGGFDLVIGG 527 (569)
Q Consensus 518 ~g~~DlliGG 527 (569)
.+.+|+|+..
T Consensus 114 ~~~fD~v~~~ 123 (242)
T 3l8d_A 114 NEQFEAIMAI 123 (242)
T ss_dssp TTCEEEEEEE
T ss_pred CCCccEEEEc
Confidence 1467877754
No 204
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=95.92 E-value=0.014 Score=57.05 Aligned_cols=81 Identities=26% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.+...+.+.+-. ..++++|+++...+..+.+....+.++..++.+|+.++... .+.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~ 105 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFE--------DSS 105 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSC--------TTC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCC--------CCC
Confidence 356789999999999999999887322 36899999999998888776655555677888898876522 157
Q ss_pred eeEEEEcCCC
Q 008350 521 FDLVIGGSPC 530 (569)
Q Consensus 521 ~DlliGGpPC 530 (569)
+|+|+.....
T Consensus 106 fD~v~~~~~l 115 (276)
T 3mgg_A 106 FDHIFVCFVL 115 (276)
T ss_dssp EEEEEEESCG
T ss_pred eeEEEEechh
Confidence 8999876543
No 205
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=95.91 E-value=0.0073 Score=61.06 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=58.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCc-eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVR-MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~-~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+-||.|.++..+.+.+-+ -..|+++|+++..+..++.++ ..+..++++|+.++....+.. .....
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~~~~--~~~~~ 114 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGSIAR--PGDEP 114 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGGGSC--SSSSC
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhHhcc--cccCC
Confidence 34678999999999999999987631 012899999999999888763 234568899999987554310 00013
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
.+.|++-+|
T Consensus 115 ~~~vv~NlP 123 (279)
T 3uzu_A 115 SLRIIGNLP 123 (279)
T ss_dssp CEEEEEECC
T ss_pred ceEEEEccC
Confidence 467777777
No 206
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=95.91 E-value=0.014 Score=56.17 Aligned_cols=78 Identities=8% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+.||.|.++..+.+. | . ..|+++|+++.+++.++.+.... ++..++.+|+.+...- +. ..+.
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~-~~----~~~~ 143 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEY-AN----IVEK 143 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGG-TT----TSCC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccc-cc----cCcc
Confidence 35678999999999999988876 5 2 37999999999998887764322 4566778888763210 00 0146
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+..+
T Consensus 144 ~D~v~~~~ 151 (230)
T 1fbn_A 144 VDVIYEDV 151 (230)
T ss_dssp EEEEEECC
T ss_pred EEEEEEec
Confidence 89988544
No 207
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=95.90 E-value=0.012 Score=61.57 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+.||.|.+++.+.++|. +.|+++|++ .+.+.++.+...++..+ ..++.+|+.++... +.
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~ 129 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EK 129 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SC
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Cc
Confidence 3567899999999999999999986 479999999 77777777765555443 56888999887632 47
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+..+
T Consensus 130 ~D~Iv~~~ 137 (376)
T 3r0q_C 130 VDVIISEW 137 (376)
T ss_dssp EEEEEECC
T ss_pred ceEEEEcC
Confidence 99999865
No 208
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=95.90 E-value=0.016 Score=56.49 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=57.9
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
....+.+.+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+ .++..++.+|+.++.. .
T Consensus 45 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---~----- 108 (263)
T 3pfg_A 45 RRHSPKAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRR-----NPDAVLHHGDMRDFSL---G----- 108 (263)
T ss_dssp HHHCTTCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTTCCC---S-----
T ss_pred HhhCCCCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhh-----CCCCEEEECChHHCCc---c-----
Confidence 33445678999999999999999999985 589999999999887764 3356678888887653 1
Q ss_pred cCCeeEEEEcC
Q 008350 518 FGGFDLVIGGS 528 (569)
Q Consensus 518 ~g~~DlliGGp 528 (569)
+.+|+|+...
T Consensus 109 -~~fD~v~~~~ 118 (263)
T 3pfg_A 109 -RRFSAVTCMF 118 (263)
T ss_dssp -CCEEEEEECT
T ss_pred -CCcCEEEEcC
Confidence 5788888654
No 209
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.89 E-value=0.0073 Score=42.88 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHhcCCC
Q 008350 133 DKEEKLVSLASMGYSVQEASIAMERCGPN 161 (569)
Q Consensus 133 ~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~ 161 (569)
+.++++..|+.|||++++|..|+..|+-+
T Consensus 3 ~~~~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 3 GLNSKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 34678999999999999999999999875
No 210
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=95.88 E-value=0.01 Score=56.98 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=61.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+.||.|.++..+.+..-. ..|+++|+++..++..+.++...+.. ...++.+|+.+.... + . ..+.+
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~---~-~~~~f 127 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK-L---E-LYPLF 127 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH-H---T-TSCCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh-c---c-cCCCc
Confidence 3568999999999999998886211 36899999999999888887655443 356778888765321 1 0 02579
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+...||..
T Consensus 128 D~I~~~~~~~~ 138 (233)
T 2gpy_A 128 DVLFIDAAKGQ 138 (233)
T ss_dssp EEEEEEGGGSC
T ss_pred cEEEECCCHHH
Confidence 99999998853
No 211
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.88 E-value=0.0098 Score=47.16 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICAAQ 175 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~aaq 175 (569)
++++..|+.|||++++|..|+..|+.+ ++.-+++|+..+
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~ 48 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence 578999999999999999999999985 777778887765
No 212
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=95.88 E-value=0.012 Score=60.97 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+-||.|.+++.+.++|. ..|+++|+++ +.+.++.+....+..+ ..++.+|+.++... .+.+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~f 134 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELP--------VEKV 134 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS--------SSCE
T ss_pred CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCC--------CCce
Confidence 457899999999999999999985 4799999995 6666676665555444 56888999887422 1579
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..++
T Consensus 135 D~Iis~~~ 142 (349)
T 3q7e_A 135 DIIISEWM 142 (349)
T ss_dssp EEEEECCC
T ss_pred EEEEEccc
Confidence 99998654
No 213
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=95.87 E-value=0.014 Score=57.54 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=59.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+.+|||+-||.|.+...+.+.|. .|+++|+++.+.+..+.+....+. ++..++.+|+.++... ..+.
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~ 136 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH-------LETP 136 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG-------CSSC
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh-------cCCC
Confidence 4467999999999999999999985 589999999999888877654433 3455788888877521 1157
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+....
T Consensus 137 fD~v~~~~~ 145 (285)
T 4htf_A 137 VDLILFHAV 145 (285)
T ss_dssp EEEEEEESC
T ss_pred ceEEEECch
Confidence 899987543
No 214
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=95.86 E-value=0.0071 Score=61.51 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=60.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-----CCCCcccccccccccchhhHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-----NQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-----N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
+.+.+||||-||.|++...+.+.. ....|.+||+++..++..+.|+... +.+...++.+|..+....
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------- 153 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------- 153 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCT-TCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C-------
T ss_pred CCCCEEEEEeCChhHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh-------
Confidence 567899999999999999888762 1257999999999999999887643 245677889998876432
Q ss_pred ccCCeeEEEEcCCC
Q 008350 517 AFGGFDLVIGGSPC 530 (569)
Q Consensus 517 ~~g~~DlliGGpPC 530 (569)
..+.+|+|+..+|.
T Consensus 154 ~~~~fDvIi~D~~~ 167 (294)
T 3adn_A 154 TSQTFDVIISDCTD 167 (294)
T ss_dssp CCCCEEEEEECC--
T ss_pred cCCCccEEEECCCC
Confidence 12579999998774
No 215
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=95.85 E-value=0.017 Score=55.81 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|.. .|+++|+++.+++..+.+.. ..+..++.+|+.++... .+.+|
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~--------~~~fD 110 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIE--------PDAYN 110 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCC--------TTCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCC--------CCCeE
Confidence 5678999999999999999999863 79999999999988876532 34556788888776521 14688
Q ss_pred EEEEcC
Q 008350 523 LVIGGS 528 (569)
Q Consensus 523 lliGGp 528 (569)
+|+...
T Consensus 111 ~v~~~~ 116 (253)
T 3g5l_A 111 VVLSSL 116 (253)
T ss_dssp EEEEES
T ss_pred EEEEch
Confidence 887754
No 216
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.84 E-value=0.0046 Score=51.84 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.8
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+++.+.||+...|..|.+.-++.|+....
T Consensus 33 v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 33 VAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 57899999999999999999998899999999998654
No 217
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.82 E-value=0.0053 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=31.3
Q ss_pred ccccccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGF-SEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf-~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++++||| +++.+.+|++..|. |.+.-+|+|+.
T Consensus 16 l~~L~~MGF~~~~~~~~AL~~t~g-n~e~A~e~L~~ 50 (52)
T 2jy5_A 16 LEQLSAMGFLNREANLQALIATGG-DINAAIERLLG 50 (52)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 578999999 99999999999987 99999999986
No 218
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=95.81 E-value=0.016 Score=56.38 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=59.2
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.++..+.+.+. .|+++|+++...+..+.+....+.++..+..+|+.++... .+.+|
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~--------~~~fD 105 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT--------DERFH 105 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC--------TTCEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC--------CCCEE
Confidence 467899999999999999998874 6999999999988888776555555667888998876521 14689
Q ss_pred EEEEcCCC
Q 008350 523 LVIGGSPC 530 (569)
Q Consensus 523 lliGGpPC 530 (569)
+|+.....
T Consensus 106 ~V~~~~~l 113 (260)
T 1vl5_A 106 IVTCRIAA 113 (260)
T ss_dssp EEEEESCG
T ss_pred EEEEhhhh
Confidence 88876443
No 219
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=95.80 E-value=0.017 Score=59.01 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=59.8
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc------C-----CCCcccccccccccchh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT------N-----QKGTLIDFADVQQLDAN 509 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~------N-----~~~~~~~~~DI~~i~~~ 509 (569)
..+.+|||+.||.|.++..+.+. |-. ..|+++|+++.+.+..+.+.... | ..+..++.+|+.+...
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~- 181 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE- 181 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-
Confidence 45678999999999999999886 532 36999999999999888876532 1 1346677889887642
Q ss_pred hHHHHHhccCCeeEEEEcCCCCc
Q 008350 510 RIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 510 ~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
.+.. +.+|+|+...|+..
T Consensus 182 ~~~~-----~~fD~V~~~~~~~~ 199 (336)
T 2b25_A 182 DIKS-----LTFDAVALDMLNPH 199 (336)
T ss_dssp -----------EEEEEECSSSTT
T ss_pred ccCC-----CCeeEEEECCCCHH
Confidence 1221 46999999877653
No 220
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=95.76 E-value=0.012 Score=55.28 Aligned_cols=71 Identities=15% Similarity=0.063 Sum_probs=57.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.| ..|+++|+++.+++..+.+... .++..++.+|+.++.. .+.+|
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~---------~~~fD 116 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR--WSHISWAATDILQFST---------AELFD 116 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT--CSSEEEEECCTTTCCC---------SCCEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc--CCCeEEEEcchhhCCC---------CCCcc
Confidence 45789999999999999999987 3689999999999888876542 2356788899988762 15799
Q ss_pred EEEEc
Q 008350 523 LVIGG 527 (569)
Q Consensus 523 lliGG 527 (569)
+|+..
T Consensus 117 ~v~~~ 121 (216)
T 3ofk_A 117 LIVVA 121 (216)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99975
No 221
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=95.74 E-value=0.011 Score=56.99 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=56.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+-||.|.+...+.+.+. ..|+++|+++.+.+..+.+....+ .+..++.+|+.++... +. .+.+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~-~~-----~~~f 129 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-LP-----DGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-SC-----TTCE
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcc-cC-----CCce
Confidence 3567899999999999999987764 479999999999988887654332 3455677887765211 11 1579
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 130 D~V~~ 134 (236)
T 1zx0_A 130 DGILY 134 (236)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99998
No 222
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=95.71 E-value=0.013 Score=58.82 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch---hhHHHHHhcc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA---NRIEQMINAF 518 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~---~~l~~~~~~~ 518 (569)
+.+.+|||+.||.|.+++.|.+.|. .|+++|+++.+++..+.+.... .+..|+.++.. ..+.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~------ 108 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELA------ 108 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGT------
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccC------
Confidence 4567899999999999999999985 5899999999999888763211 34556665543 1211
Q ss_pred CCeeEEEEcCCCCcc
Q 008350 519 GGFDLVIGGSPCNNL 533 (569)
Q Consensus 519 g~~DlliGGpPCQ~f 533 (569)
+.+|+|+.....+.+
T Consensus 109 ~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 109 GHFDFVLNDRLINRF 123 (261)
T ss_dssp TCCSEEEEESCGGGS
T ss_pred CCccEEEEhhhhHhC
Confidence 579999987654433
No 223
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=95.70 E-value=0.0057 Score=67.55 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=66.0
Q ss_pred ccccccccccchhhhhhh-hhcc--CCCCcceeccccChhHHHHHHHHc-C-CceeEEEeeccCHHHHHHHHHHHhhcCC
Q 008350 419 KSLGNSFQVDTVAYHLSV-LKEM--YPDGINVLSLFSGIGGAEVALHRL-G-VRMKNVVSVDISEVNRNIVRSWWEQTNQ 493 (569)
Q Consensus 419 k~lgn~fqvnt~~~~ls~-lk~~--~~~~i~vlDLFSGiGG~slGl~~a-G-i~~k~V~avEid~~A~~t~~~n~~~~N~ 493 (569)
+..|.||....+...+.. +... ...+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+....+.|....+.
T Consensus 194 k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi 273 (542)
T 3lkd_A 194 KKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGV 273 (542)
T ss_dssp -CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred ccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCC
Confidence 456666665444221111 1111 224679999999999988866553 1 0014799999999999988877544433
Q ss_pred --CCcccccccccccchhhHHHHHhccCCeeEEEEcCCCC
Q 008350 494 --KGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 494 --~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
....+.++|.-..+.... ....+|+|++-||=.
T Consensus 274 ~~~~~~I~~gDtL~~d~p~~-----~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 274 PIENQFLHNADTLDEDWPTQ-----EPTNFDGVLMNPPYS 308 (542)
T ss_dssp CGGGEEEEESCTTTSCSCCS-----SCCCBSEEEECCCTT
T ss_pred CcCccceEecceeccccccc-----ccccccEEEecCCcC
Confidence 223466777654421000 125799999999976
No 224
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=95.70 E-value=0.025 Score=54.04 Aligned_cols=74 Identities=12% Similarity=-0.003 Sum_probs=56.6
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.++..+.+.|. .|+++|+++.+++..+.+ .++..++.+|+.+...- . ..+.
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~--~----~~~~ 111 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA--G----LGAP 111 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT--T----CCCC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC--c----CCCC
Confidence 35578899999999999999999874 689999999999887764 45667888998532211 0 0157
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+..+
T Consensus 112 fD~v~~~~ 119 (226)
T 3m33_A 112 FGLIVSRR 119 (226)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99999874
No 225
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=95.67 E-value=0.017 Score=56.35 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=58.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh------cCCCCcccccccccccchhhHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ------TNQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~------~N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
...+|||+-||.|.+.+.+.+..-. ..++++|+++.+++..+.+... .+..+..++.+|+.+.....+.
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~---- 120 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY---- 120 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC----
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC----
Confidence 4578999999999999999876322 3689999999988776655432 2345567888998763221111
Q ss_pred ccCCeeEEEEcCCCCc
Q 008350 517 AFGGFDLVIGGSPCNN 532 (569)
Q Consensus 517 ~~g~~DlliGGpPCQ~ 532 (569)
.+.+|.|+..+|..-
T Consensus 121 -~~~~D~v~~~~~dp~ 135 (235)
T 3ckk_A 121 -KGQLTKMFFLFPDPH 135 (235)
T ss_dssp -TTCEEEEEEESCC--
T ss_pred -CcCeeEEEEeCCCch
Confidence 257999988777643
No 226
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=95.66 E-value=0.01 Score=57.08 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=55.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.+. ..|+++|+++.+++..+.+....+.....++.+|+.++... .+.+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~fD 148 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE--------PDSYD 148 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC--------SSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCC--------CCCEE
Confidence 467899999999999999888763 47999999999998888775433222344677787766421 14689
Q ss_pred EEEEc
Q 008350 523 LVIGG 527 (569)
Q Consensus 523 lliGG 527 (569)
+|+..
T Consensus 149 ~v~~~ 153 (241)
T 2ex4_A 149 VIWIQ 153 (241)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88865
No 227
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=95.65 E-value=0.016 Score=59.82 Aligned_cols=76 Identities=17% Similarity=0.115 Sum_probs=57.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+-||.|.+++.+.++|. ..|+++|+++ +.+..+.+...++. ....++.+|+.++... .+.
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~ 131 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEK 131 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSC
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCC--------CCc
Confidence 3456899999999999999999885 4799999997 66767766654444 4566788999877421 147
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+..+
T Consensus 132 ~D~Ivs~~ 139 (340)
T 2fyt_A 132 VDVIISEW 139 (340)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 99999764
No 228
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=95.64 E-value=0.027 Score=53.50 Aligned_cols=74 Identities=20% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+.+.|. .+.++|+++.+++..+.+....+. +..++.+|+.++... +.+
T Consensus 36 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~---------~~f 102 (246)
T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN---------RKF 102 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS---------CCE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc---------CCc
Confidence 3567899999999999999999885 589999999999888877554332 456778888776421 478
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+...
T Consensus 103 D~v~~~~ 109 (246)
T 1y8c_A 103 DLITCCL 109 (246)
T ss_dssp EEEEECT
T ss_pred eEEEEcC
Confidence 9998754
No 229
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=95.59 E-value=0.015 Score=66.89 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=54.1
Q ss_pred CCCcceeccccChhHHHHHHHHcC--CceeEEEeeccCHHHHHHH--HHHHhh----cCCCCcccccccccccchhhHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLG--VRMKNVVSVDISEVNRNIV--RSWWEQ----TNQKGTLIDFADVQQLDANRIEQ 513 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aG--i~~k~V~avEid~~A~~t~--~~n~~~----~N~~~~~~~~~DI~~i~~~~l~~ 513 (569)
+.+.+|+|.+||.|++-+.+.+.. ..-..++++|+++.+.+.. +.|... .+.....+..+|.......
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~---- 395 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE---- 395 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG----
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc----
Confidence 457899999999999999887642 2113589999999998877 544321 1111113344555443211
Q ss_pred HHhccCCeeEEEEcCCCC
Q 008350 514 MINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 514 ~~~~~g~~DlliGGpPCQ 531 (569)
..+.+|+|++-||=-
T Consensus 396 ---~~~kFDVVIgNPPYg 410 (878)
T 3s1s_A 396 ---DFANVSVVVMNPPYV 410 (878)
T ss_dssp ---GGTTEEEEEECCBCC
T ss_pred ---ccCCCCEEEECCCcc
Confidence 125799999999973
No 230
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=95.58 E-value=0.018 Score=58.90 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+-||.|.+++.+.++|. ..|+++|+++ ....++.+...++.. ...++.+|+.++... .+.+
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~~ 106 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLP--------FPKV 106 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------SSCE
T ss_pred CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccCC--------CCcc
Confidence 356899999999999999999885 4799999994 666666665544443 356788898877421 1479
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..++
T Consensus 107 D~Ivs~~~ 114 (328)
T 1g6q_1 107 DIIISEWM 114 (328)
T ss_dssp EEEEECCC
T ss_pred cEEEEeCc
Confidence 99998765
No 231
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.56 E-value=0.0081 Score=49.01 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=32.9
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHS 38 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~ 38 (569)
|.++++|||+++.+.+|++..|. |.+.-+|+|+...
T Consensus 33 v~~L~~MGF~~~~a~~AL~~t~~-nve~Ave~L~~~~ 68 (73)
T 1wiv_A 33 VDTLLSFGFAEDVARKALKASGG-DIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTS-CHHHHHHHHHHSC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHhCC
Confidence 57899999999999999999987 9999999999854
No 232
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=95.56 E-value=0.031 Score=55.77 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=38.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeecc-CHHHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDI-SEVNRNIVRSWW 488 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEi-d~~A~~t~~~n~ 488 (569)
.+.+||||.||.|.+++.+.+.|. ..|+++|+ ++.+++..+.|.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence 456899999999999999999885 47999999 899999988886
No 233
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=95.56 E-value=0.018 Score=55.50 Aligned_cols=77 Identities=16% Similarity=0.067 Sum_probs=58.0
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.++..+.+.|. .|+++|+++.+++..+.+. ....++..+..+|+.++... .+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~--------~~~ 104 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLP--------DES 104 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSC--------TTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCC--------CCC
Confidence 34567899999999999999998874 6899999999998887764 22345566778888776421 146
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+....
T Consensus 105 fD~v~~~~~ 113 (263)
T 2yqz_A 105 VHGVIVVHL 113 (263)
T ss_dssp EEEEEEESC
T ss_pred eeEEEECCc
Confidence 888887543
No 234
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=95.55 E-value=0.019 Score=54.63 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=59.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+.+..-. ..++++|+++.+++..+.++... ++..++.+|+.++... +.+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~---------~~f 110 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFRGN--LKVKYIEADYSKYDFE---------EKY 110 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTCSC--TTEEEEESCTTTCCCC---------SCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHhhccC--CCEEEEeCchhccCCC---------CCc
Confidence 45689999999999999999887311 36899999999998888764322 2566788898877632 479
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+......
T Consensus 111 D~v~~~~~l~ 120 (234)
T 3dtn_A 111 DMVVSALSIH 120 (234)
T ss_dssp EEEEEESCGG
T ss_pred eEEEEeCccc
Confidence 9999876543
No 235
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=95.55 E-value=0.022 Score=54.49 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CC-----ceeEEEeeccCHHHHHHHHHHHhhcC-----CCCcccccccccccchh
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GV-----RMKNVVSVDISEVNRNIVRSWWEQTN-----QKGTLIDFADVQQLDAN 509 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi-----~~k~V~avEid~~A~~t~~~n~~~~N-----~~~~~~~~~DI~~i~~~ 509 (569)
...+.+|||+.||.|.++..+.+. |. . ..|+++|+++...+..+.+....+ ..+..+..+|+.+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP 160 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence 345678999999999999988773 31 0 168999999999888877655432 33556778888763211
Q ss_pred hHHHHHhccCCeeEEEEcCCCCc
Q 008350 510 RIEQMINAFGGFDLVIGGSPCNN 532 (569)
Q Consensus 510 ~l~~~~~~~g~~DlliGGpPCQ~ 532 (569)
.+.+|+|+.+.++..
T Consensus 161 --------~~~fD~I~~~~~~~~ 175 (227)
T 1r18_A 161 --------NAPYNAIHVGAAAPD 175 (227)
T ss_dssp --------GCSEEEEEECSCBSS
T ss_pred --------CCCccEEEECCchHH
Confidence 157999999888754
No 236
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.55 E-value=0.022 Score=43.74 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=33.5
Q ss_pred ChhHHHHHHHhCCCCHH-HHHHHHHHhCCCchhHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVD-MVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~-~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
.....+..|+.|||+.+ .+.+|++.++. |++..++.|+..
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~ 48 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQS 48 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 44667899999999665 57999999995 789999999963
No 237
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=95.52 E-value=0.019 Score=54.64 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhcc--C
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAF--G 519 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~--g 519 (569)
...+|+|+.||.|.+++.+.+..-.-..|+++|+++.+.+..+.++...+. ....++.+|+.+.... +. ... +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~---~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE-LL---AAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH-HH---HTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHH-HH---hcCCCC
Confidence 456899999999999999988521013699999999999988888765544 2455677777654321 11 111 4
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+..+|..
T Consensus 145 ~~D~v~~d~~~~ 156 (229)
T 2avd_A 145 TFDVAVVDADKE 156 (229)
T ss_dssp CEEEEEECSCST
T ss_pred CccEEEECCCHH
Confidence 799999988754
No 238
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=95.50 E-value=0.071 Score=55.42 Aligned_cols=54 Identities=15% Similarity=0.367 Sum_probs=42.5
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhC
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENG 72 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G 72 (569)
+..|.+|||+++-|.++|..+-.--...+ ..++..|..+||+.+.|.++|.++=
T Consensus 50 l~~L~d~Gfs~~~i~~il~~~P~il~~~l-----------------~~~i~~L~~LGls~e~V~kiL~k~P 103 (335)
T 4fp9_B 50 MSSLLDMGFSNAHINELLSVRRGASLQQL-----------------LDIISEFILLGLNPEPVCVVLKKSP 103 (335)
T ss_dssp HHHHHHTTCCHHHHHHHHHHCSSCCHHHH-----------------HHHHHHHHHTTCCHHHHHHHHHHCG
T ss_pred HHHHHHCCCCHHHHHHHHHhCcccchhHH-----------------HHHHHHHHHcCCCHHHHHHHHHhCh
Confidence 45688999999999999999865322222 2457788889999999999999973
No 239
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=95.44 E-value=0.035 Score=55.38 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=57.7
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+-||.|++...+.+. |. .|+++|+++...+..+.+....+.+ ...+..+|+.++. +
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 136 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFD-----------E 136 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCC-----------C
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcC-----------C
Confidence 45678999999999999999887 74 5899999999998888776654444 4567888887761 5
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 137 ~fD~v~~~~ 145 (302)
T 3hem_A 137 PVDRIVSLG 145 (302)
T ss_dssp CCSEEEEES
T ss_pred CccEEEEcc
Confidence 789888754
No 240
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=95.44 E-value=0.023 Score=58.69 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|||+-||.|.+++.+.+.|. ..|+++|+++ .....+.+...++. ....++.+|+.++... +.+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~---------~~~ 117 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---------EQV 117 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS---------SCE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC---------Cce
Confidence 456899999999999999999875 4799999997 44555555444443 3466788998877421 479
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..++
T Consensus 118 D~Ivs~~~ 125 (348)
T 2y1w_A 118 DIIISEPM 125 (348)
T ss_dssp EEEEECCC
T ss_pred eEEEEeCc
Confidence 99998776
No 241
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=95.42 E-value=0.021 Score=56.44 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh-----------------cCCCCcccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ-----------------TNQKGTLIDFADVQQ 505 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~-----------------~N~~~~~~~~~DI~~ 505 (569)
.+.+|||+=||.|....-|.+.|. .|+++|+++.+++.++..... ....+..++++|+.+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 567899999999999999999997 589999999999887654310 012345678899988
Q ss_pred cchhhHHHHHhccCCeeEEEE
Q 008350 506 LDANRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 506 i~~~~l~~~~~~~g~~DlliG 526 (569)
+.... .+.||+|+.
T Consensus 145 l~~~~-------~~~FD~V~~ 158 (252)
T 2gb4_A 145 LPRAN-------IGKFDRIWD 158 (252)
T ss_dssp GGGGC-------CCCEEEEEE
T ss_pred CCccc-------CCCEEEEEE
Confidence 76421 157899884
No 242
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.40 E-value=0.018 Score=44.93 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=32.3
Q ss_pred hHHHHHHHhCCCC-HHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 48 SKLIDHFVGMGFS-VDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 48 ~~~~~~~~~MGF~-~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
...+.+|++|||. ++.+.+|+..++. |++..+|.|+.
T Consensus 18 ~~qi~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 4568999999995 7788999999995 78999999986
No 243
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=95.39 E-value=0.022 Score=58.54 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=58.8
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-+|+|+.||.|.++..+.+.+-. ..|.++|+++.+++..+.+....+. ...++.+|+.+.. .+.+|+
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~----------~~~fD~ 264 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV----------KGRFDM 264 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC----------CSCEEE
T ss_pred CCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc----------cCCeeE
Confidence 458999999999999999888743 2689999999999988887765443 2445677776542 157999
Q ss_pred EEEcCCCC
Q 008350 524 VIGGSPCN 531 (569)
Q Consensus 524 liGGpPCQ 531 (569)
|+..||..
T Consensus 265 Iv~~~~~~ 272 (343)
T 2pjd_A 265 IISNPPFH 272 (343)
T ss_dssp EEECCCCC
T ss_pred EEECCCcc
Confidence 99999875
No 244
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.38 E-value=0.02 Score=57.88 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=39.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ 490 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~ 490 (569)
.+-+|||+|||.|...+++.+.|. .++++|+++.+++..+.++..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHHH
Confidence 456899999999999999999994 689999999999988877654
No 245
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=95.36 E-value=0.036 Score=53.18 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=61.2
Q ss_pred ccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhh-HHHHHhc
Q 008350 439 EMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANR-IEQMINA 517 (569)
Q Consensus 439 ~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~-l~~~~~~ 517 (569)
...+.+.+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+. ...+..++.+|+.++.... +..
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~~~---- 121 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQAAQIHS---- 121 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHHHHHHHH----
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECccccccccccccc----
Confidence 3345678899999999999999999885 5899999999998887754 2335668889998875432 110
Q ss_pred cCCeeEEEEcCCCC
Q 008350 518 FGGFDLVIGGSPCN 531 (569)
Q Consensus 518 ~g~~DlliGGpPCQ 531 (569)
...+|+|+......
T Consensus 122 ~~~~d~v~~~~~~~ 135 (245)
T 3ggd_A 122 EIGDANIYMRTGFH 135 (245)
T ss_dssp HHCSCEEEEESSST
T ss_pred ccCccEEEEcchhh
Confidence 12489998876544
No 246
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=95.35 E-value=0.013 Score=59.50 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=56.1
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
+-.++|||+|.|.+.+-+-+.| +.++.||.++.+.++++.|... ...+.++..|..... ..+......+|+
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~---d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L----~~l~~~~~~fdL 162 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQ---DRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKL----NALLPPPEKRGL 162 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTT---SEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHH----HHHCSCTTSCEE
T ss_pred CCCceeEeCCcHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHH----HHhcCCCCCccE
Confidence 4569999999999888766644 5789999999999999987542 233556666654332 222222236999
Q ss_pred EEEcCCCC
Q 008350 524 VIGGSPCN 531 (569)
Q Consensus 524 liGGpPCQ 531 (569)
|..+||=.
T Consensus 163 VfiDPPYe 170 (283)
T 2oo3_A 163 IFIDPSYE 170 (283)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99999953
No 247
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=95.35 E-value=0.033 Score=52.93 Aligned_cols=74 Identities=22% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.++..+.+. . .++++|+++.+++..+.+....+ .+..++.+|+.++... +.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~---------~~ 96 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP---------EP 96 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS---------SC
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC---------CC
Confidence 344678999999999999998887 3 68999999999988887765433 3456778888776421 46
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+...
T Consensus 97 fD~v~~~~ 104 (243)
T 3d2l_A 97 VDAITILC 104 (243)
T ss_dssp EEEEEECT
T ss_pred cCEEEEeC
Confidence 88888643
No 248
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=95.33 E-value=0.027 Score=52.35 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred cceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCee
Q 008350 445 INVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+|||+-||.|.+...+.+. + ..++++|+++.++...+.+....+.. +..++.+|+.++... .+.+|
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~D 113 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSD---FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE--------DNYAD 113 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSE---EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC--------TTCEE
T ss_pred CEEEEECCCCCHHHHHHHHcCC---CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC--------ccccc
Confidence 39999999999999999887 3 37899999999998888776554432 456788898876521 15799
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+......
T Consensus 114 ~v~~~~~l~ 122 (219)
T 3dlc_A 114 LIVSRGSVF 122 (219)
T ss_dssp EEEEESCGG
T ss_pred EEEECchHh
Confidence 999876443
No 249
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=95.31 E-value=0.021 Score=56.95 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=55.4
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC---CCcccccccccccchhhHHHHHhccCC
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ---KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~---~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+-+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+....+. .+..++.+|+.++.. . +.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---~------~~ 150 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---D------KR 150 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---S------CC
T ss_pred CCcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---C------CC
Confidence 44899999999999999999985 589999999999888877553321 345688899988753 1 57
Q ss_pred eeEEEE
Q 008350 521 FDLVIG 526 (569)
Q Consensus 521 ~DlliG 526 (569)
+|+|+.
T Consensus 151 fD~v~~ 156 (299)
T 3g2m_A 151 FGTVVI 156 (299)
T ss_dssp EEEEEE
T ss_pred cCEEEE
Confidence 887774
No 250
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=95.31 E-value=0.022 Score=55.40 Aligned_cols=86 Identities=9% Similarity=0.003 Sum_probs=61.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhc---c
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINA---F 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~---~ 518 (569)
+..+|||+-||.|+.++.+.++--.-..++++|+++...+..+.++...+..+ ..++.+|..++... + ... .
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~-l---~~~~~~~ 145 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDN-L---LQGQESE 145 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-H---HHSTTCT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH-H---HhccCCC
Confidence 45689999999999999988751000368999999999999998887655432 45677777654321 1 111 2
Q ss_pred CCeeEEEEcCCCCc
Q 008350 519 GGFDLVIGGSPCNN 532 (569)
Q Consensus 519 g~~DlliGGpPCQ~ 532 (569)
+.+|+|+...+|..
T Consensus 146 ~~fD~I~~d~~~~~ 159 (237)
T 3c3y_A 146 GSYDFGFVDADKPN 159 (237)
T ss_dssp TCEEEEEECSCGGG
T ss_pred CCcCEEEECCchHH
Confidence 57999999887754
No 251
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=95.29 E-value=0.019 Score=56.48 Aligned_cols=79 Identities=24% Similarity=0.234 Sum_probs=57.1
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+.+.+|||+-||.|.+...+.+.|. ..++++|+++.+++..+.++...+. ....++.+|+.++... ..+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~ 132 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGK 132 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSS
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCC
Confidence 35678999999999999998888874 3799999999999888877654322 2245677888765321 014
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 133 ~fD~v~~~~ 141 (298)
T 1ri5_A 133 EFDVISSQF 141 (298)
T ss_dssp CEEEEEEES
T ss_pred CcCEEEECc
Confidence 678887654
No 252
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=95.25 E-value=0.023 Score=61.70 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=57.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+.+|+|+.||.|.+++.+.+.|. ..|+++|+++ +.+.++.+....+. ....++.+|+.++.. + +.+
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---~------~~f 225 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---P------EQV 225 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---S------SCE
T ss_pred CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---C------CCe
Confidence 457899999999999999988874 4799999998 66666666554444 346678899887642 1 479
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+..+|
T Consensus 226 D~Ivs~~~ 233 (480)
T 3b3j_A 226 DIIISEPM 233 (480)
T ss_dssp EEEECCCC
T ss_pred EEEEEeCc
Confidence 99998766
No 253
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.23 E-value=0.024 Score=46.43 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=33.8
Q ss_pred ChhHHHHHHHhCCC-CHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 46 SKSKLIDHFVGMGF-SVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 46 s~~~~~~~~~~MGF-~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.....+..|++||| .++.+.+|++.++. |++..+|.|+.
T Consensus 28 ~ye~qi~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~ 67 (74)
T 1vej_A 28 RYQQELEELKALGFANRDANLQALVATDG-DIHAAIEMLLG 67 (74)
T ss_dssp TSHHHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 44567899999999 58889999999985 78999999996
No 254
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=95.22 E-value=0.0023 Score=62.61 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=56.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+.||.|+++..+.+.|. .|+++|+++.+.+.++.+.. ..++..++.+|+.++.... .+.+
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~-------~~~f 95 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPN-------KQRY 95 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCC-------SSEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCccc-------CCCc
Confidence 4567899999999999999988873 69999999988766554432 2234567889998775210 1356
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
.|++.||...
T Consensus 96 -~vv~n~Py~~ 105 (245)
T 1yub_A 96 -KIVGNIPYHL 105 (245)
T ss_dssp -EEEEECCSSS
T ss_pred -EEEEeCCccc
Confidence 7888888653
No 255
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=95.22 E-value=0.02 Score=57.48 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=60.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC----CCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN----QKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N----~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+||++-||.|++...+.+.. ....+.++|+++..++..+.++...+ .+...++.+|+.+.... .
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~-------~ 148 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-------V 148 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-------C
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-------C
Confidence 456789999999999999988763 12579999999999999888765322 34556777777654321 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..++.
T Consensus 149 ~~~fD~Ii~d~~~ 161 (283)
T 2i7c_A 149 TNTYDVIIVDSSD 161 (283)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEEcCCC
Confidence 2579999998764
No 256
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=95.20 E-value=0.032 Score=41.20 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=35.3
Q ss_pred CChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008350 45 SSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYS 87 (569)
Q Consensus 45 ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~ 87 (569)
+..+..+..|+.|||+.+.|.+|+..... |++..-+.|+.+-
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~N-nie~A~nIL~ef~ 43 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFA 43 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTT-CHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhc-cHHHHHHHHHHhc
Confidence 44567789999999999999999999886 6788888888764
No 257
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=95.19 E-value=0.035 Score=51.78 Aligned_cols=71 Identities=20% Similarity=0.019 Sum_probs=53.8
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
.+.+.+|||+-||.|.+...+.+.|. .++++|+++.+++..+. .+.++..++.+|+.++.. .+.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~---------~~~ 107 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTP---------DRQ 107 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCC---------SSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCC---------CCc
Confidence 34456899999999999999999875 58999999999887764 233556678888877621 146
Q ss_pred eeEEEEc
Q 008350 521 FDLVIGG 527 (569)
Q Consensus 521 ~DlliGG 527 (569)
+|+|+..
T Consensus 108 ~D~v~~~ 114 (218)
T 3ou2_A 108 WDAVFFA 114 (218)
T ss_dssp EEEEEEE
T ss_pred eeEEEEe
Confidence 7777764
No 258
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=95.19 E-value=0.025 Score=54.52 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=55.2
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++.+++..+.+.... ++..++.+|+.++... .+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~ 120 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFP--------ENN 120 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCC--------TTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCC--------CCc
Confidence 35678999999999999999886 64 6899999999998877653221 4566778888876421 146
Q ss_pred eeEEEEcC
Q 008350 521 FDLVIGGS 528 (569)
Q Consensus 521 ~DlliGGp 528 (569)
+|+|+...
T Consensus 121 fD~v~~~~ 128 (266)
T 3ujc_A 121 FDLIYSRD 128 (266)
T ss_dssp EEEEEEES
T ss_pred EEEEeHHH
Confidence 88887653
No 259
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=95.16 E-value=0.021 Score=60.21 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=53.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
+-+|||+=||.|.+++-+.++|- +.|+|||.++.+ ...+.+...++..+ ..++.+|++++... .++|
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA--~~V~ave~s~~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~lp---------e~~D 151 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGA--RRVYAVEASAIW-QQAREVVRFNGLEDRVHVLPGPVETVELP---------EQVD 151 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCS---------SCEE
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CEEEEEeChHHH-HHHHHHHHHcCCCceEEEEeeeeeeecCC---------cccc
Confidence 45699999999999999999996 479999999643 34454544445443 55788999888532 4799
Q ss_pred EEEE
Q 008350 523 LVIG 526 (569)
Q Consensus 523 lliG 526 (569)
+||.
T Consensus 152 vivs 155 (376)
T 4hc4_A 152 AIVS 155 (376)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9985
No 260
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=95.16 E-value=0.015 Score=54.84 Aligned_cols=81 Identities=16% Similarity=0.065 Sum_probs=56.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
...+|||+.||.|..++.+.+.--.-..|+++|+++.+.+..+.++...+.. ...++.+|+.++... ..+ +
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~-f 127 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG-------QRD-I 127 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT-------CCS-E
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc-------CCC-C
Confidence 3568999999999999999876210136899999999999888887654432 244566666543211 014 9
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
|+|+...++.
T Consensus 128 D~v~~~~~~~ 137 (210)
T 3c3p_A 128 DILFMDCDVF 137 (210)
T ss_dssp EEEEEETTTS
T ss_pred CEEEEcCChh
Confidence 9999886654
No 261
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=95.13 E-value=0.041 Score=52.97 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-Ccccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLD 507 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~ 507 (569)
+.+.+|||+-||.|.++..+.+. |. .|+++|+++...+..+.+....+.. +..+..+|+.++.
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~ 99 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence 45678999999999999988875 53 5899999999998888776544332 4567788887664
No 262
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=95.13 E-value=0.032 Score=53.29 Aligned_cols=73 Identities=22% Similarity=0.064 Sum_probs=54.8
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhccCCeeE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
.+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+....+ .....++.+|+.++... +.+|+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~ 135 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL 135 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence 4899999999999999988774 58999999999988887654321 12355778888876522 36888
Q ss_pred EEEcCC
Q 008350 524 VIGGSP 529 (569)
Q Consensus 524 liGGpP 529 (569)
|+....
T Consensus 136 v~~~~~ 141 (235)
T 3lcc_A 136 IFDYVF 141 (235)
T ss_dssp EEEESS
T ss_pred EEEChh
Confidence 886543
No 263
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=95.11 E-value=0.019 Score=59.02 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+|+|+-||.|++...+.+.. ....|.++|+++.+++..+.|+... +.+...++.+|+.+.... .
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~-------~ 186 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN-------V 186 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-------C
T ss_pred CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh-------c
Confidence 456789999999999999988762 1247999999999999998876431 134456677777654211 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..++.
T Consensus 187 ~~~fDvIi~d~~~ 199 (321)
T 2pt6_A 187 TNTYDVIIVDSSD 199 (321)
T ss_dssp CSCEEEEEEECCC
T ss_pred CCCceEEEECCcC
Confidence 2579999998753
No 264
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=95.11 E-value=0.016 Score=59.00 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+|||+.||.|++...+.+.+- ...|.++|+++..++..+.|+... +.+...++.+|+.++... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-------~ 165 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-------N 165 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-------C
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-------C
Confidence 4567899999999999999987641 257999999999999988876531 234566777887654211 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..+|.
T Consensus 166 ~~~fD~Ii~d~~~ 178 (304)
T 2o07_A 166 QDAFDVIITDSSD 178 (304)
T ss_dssp SSCEEEEEEECC-
T ss_pred CCCceEEEECCCC
Confidence 2579999998875
No 265
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=95.11 E-value=0.065 Score=62.26 Aligned_cols=109 Identities=20% Similarity=0.283 Sum_probs=71.1
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGE 125 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e 125 (569)
.+..++.+|+.||||+....+|+...|..+.+...+.|++...-. .. +. +... +. . ....+. .
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd~--di--~~--p~~~-~~-----~----~~~~s~-~ 713 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP--DF--AN--PLIL-PG-----S----SGPGST-S 713 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTSC--GG--GS--CCCC-C-------------------
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCcc--cc--cc--cccc-cc-----c----cccccc-c
Confidence 345678999999999999999999999999999999997532110 00 00 0000 00 0 000000 0
Q ss_pred ccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 008350 126 EITNPDPDKEEKLVSLASMGYSVQEASIAMERCGPNTSIAELTDFICAAQ 175 (569)
Q Consensus 126 ~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~~~~l~D~i~aaq 175 (569)
.+ ..+...+.+..|..|||+++.|..|+..++. .++.-+|.|+.--
T Consensus 714 ~~--~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs~~ 759 (854)
T 3ihp_A 714 AA--ADPPPEDCVTTIVSMGFSRDQALKALRATNN--SLERAVDWIFSHI 759 (854)
T ss_dssp -------CCHHHHHHHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHHHH
T ss_pred cc--cCCCCHHHHHHHHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhcCc
Confidence 00 0223467899999999999999999999986 5777788888743
No 266
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=95.10 E-value=0.035 Score=59.52 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=59.3
Q ss_pred CCCCcceeccccChhHHHHHHHH-cCCceeEEEeeccCHHHHHHHHHHHh-------hcC--CCCcccccccccccchhh
Q 008350 441 YPDGINVLSLFSGIGGAEVALHR-LGVRMKNVVSVDISEVNRNIVRSWWE-------QTN--QKGTLIDFADVQQLDANR 510 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~-aGi~~k~V~avEid~~A~~t~~~n~~-------~~N--~~~~~~~~~DI~~i~~~~ 510 (569)
...+.+|+||-||.|.+.+.+.. .|. ..+++||+++.+++..+.+.. ..+ .....++++|+.++....
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d 248 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 248 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence 34567899999999999998764 564 469999999988877765431 112 245678899999875422
Q ss_pred HHHHHhccCCeeEEEEcCCC
Q 008350 511 IEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpPC 530 (569)
. +..+|+|+..++|
T Consensus 249 ~------~~~aDVVf~Nn~~ 262 (438)
T 3uwp_A 249 R------IANTSVIFVNNFA 262 (438)
T ss_dssp H------HHTCSEEEECCTT
T ss_pred c------cCCccEEEEcccc
Confidence 1 1368999988776
No 267
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=95.09 E-value=0.024 Score=55.71 Aligned_cols=83 Identities=12% Similarity=0.122 Sum_probs=60.5
Q ss_pred CCcceeccccChhHHHHHHHHc---CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhc-
Q 008350 443 DGINVLSLFSGIGGAEVALHRL---GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINA- 517 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a---Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~- 517 (569)
...+|||+.||.|..++.+.++ +. .|+++|+++...+..+.++...+.. ...++.+|..++... + ...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~-l---~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDE-M---IKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH-H---HHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH-H---Hhcc
Confidence 3568999999999999998876 43 6899999999999988887665442 345677777654321 1 111
Q ss_pred --cCCeeEEEEcCCCCc
Q 008350 518 --FGGFDLVIGGSPCNN 532 (569)
Q Consensus 518 --~g~~DlliGGpPCQ~ 532 (569)
.+.||+|+...++..
T Consensus 152 ~~~~~fD~V~~d~~~~~ 168 (247)
T 1sui_A 152 KNHGSYDFIFVDADKDN 168 (247)
T ss_dssp GGTTCBSEEEECSCSTT
T ss_pred CCCCCEEEEEEcCchHH
Confidence 257999999887654
No 268
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=95.06 E-value=0.031 Score=61.71 Aligned_cols=103 Identities=16% Similarity=0.067 Sum_probs=63.2
Q ss_pred ccccccccccchhhhhhhhhccCCCCcceeccccChhHHHHHHHHc--------C-------CceeEEEeeccCHHHHHH
Q 008350 419 KSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRL--------G-------VRMKNVVSVDISEVNRNI 483 (569)
Q Consensus 419 k~lgn~fqvnt~~~~ls~lk~~~~~~i~vlDLFSGiGG~slGl~~a--------G-------i~~k~V~avEid~~A~~t 483 (569)
+..|.||....+...+..+ ..+...+|+|.+||.|||-+.+.+. + .. ..++++|+++.+...
T Consensus 222 k~~G~fyTP~~Vv~lmv~l--l~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~-~~i~G~Eid~~~~~l 298 (544)
T 3khk_A 222 KQGGQYYTPKSIVTLIVEM--LEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQ-ISVYGQESNPTTWKL 298 (544)
T ss_dssp CCSTTTCCCHHHHHHHHHH--HCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGG-EEEEECCCCHHHHHH
T ss_pred ccCCeEeCCHHHHHHHHHH--HhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhh-ceEEEEeCCHHHHHH
Confidence 4556666554432222211 1233459999999999998766321 0 02 369999999999998
Q ss_pred HHHHHhhcCCCCc-ccccccccccchhhHHHHHhccCCeeEEEEcCCCC
Q 008350 484 VRSWWEQTNQKGT-LIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 484 ~~~n~~~~N~~~~-~~~~~DI~~i~~~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
.+.|....+.... .+.++|.-..... ....+|+|++-||=.
T Consensus 299 A~~Nl~l~gi~~~i~i~~gDtL~~~~~-------~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 299 AAMNMVIRGIDFNFGKKNADSFLDDQH-------PDLRADFVMTNPPFN 340 (544)
T ss_dssp HHHHHHHTTCCCBCCSSSCCTTTSCSC-------TTCCEEEEEECCCSS
T ss_pred HHHHHHHhCCCcccceeccchhcCccc-------ccccccEEEECCCcC
Confidence 8887654443322 1256665433210 115799999999964
No 269
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=95.02 E-value=0.014 Score=70.49 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=37.8
Q ss_pred eeccCccccCCcccceeeccCCCCccccCCcccceeecccccccccc
Q 008350 382 WVGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVD 428 (569)
Q Consensus 382 wvg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvn 428 (569)
++++...+.|+.+|..+|||||++|.+. ++.+.+++++||++.+.
T Consensus 1251 ~iHP~q~R~LTVREaARLQsFPDdF~F~--Gs~t~~yrQIGNAVPPl 1295 (1330)
T 3av4_A 1251 VLHPEQHRVVSVRECARSQGFPDSYRFF--GNILDRHRQVGNAVPPP 1295 (1330)
T ss_dssp CBCSSSSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHH
T ss_pred ccCccccccCCHHHHHHhcCCCCCeEEC--CCHhhhhEEeEeCcCHH
Confidence 4556566889999999999999999885 57788899999998875
No 270
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=95.00 E-value=0.055 Score=53.73 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=56.5
Q ss_pred CCCCcceeccccChhHHHHHHHHcCC-ceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhcc
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGV-RMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi-~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+.+||||=||.|.+++.+.+..- +--.|+++|+++..++..+.+....+.. .+.++++|+.++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---------- 137 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---------- 137 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence 34578899999999999999887521 1015899999999998888776544322 35577899887752
Q ss_pred CCeeEEEEcC
Q 008350 519 GGFDLVIGGS 528 (569)
Q Consensus 519 g~~DlliGGp 528 (569)
+++|+|+...
T Consensus 138 ~~~d~v~~~~ 147 (261)
T 4gek_A 138 ENASMVVLNF 147 (261)
T ss_dssp CSEEEEEEES
T ss_pred cccccceeee
Confidence 3678877654
No 271
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=94.96 E-value=0.022 Score=54.65 Aligned_cols=74 Identities=11% Similarity=-0.039 Sum_probs=55.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|. ..|.++|+++.+++..+.+.... +...++.+|+.++... .+.+|
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD 160 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD 160 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCC--------CCCeE
Confidence 467899999999999999888774 46999999999998888764321 3455677888765421 14678
Q ss_pred EEEEcC
Q 008350 523 LVIGGS 528 (569)
Q Consensus 523 lliGGp 528 (569)
+|+...
T Consensus 161 ~v~~~~ 166 (254)
T 1xtp_A 161 LIVIQW 166 (254)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 887643
No 272
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=94.93 E-value=0.012 Score=43.93 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.4
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|+.+++|||++..|.+|+...| .|.+.-.+.|+.
T Consensus 8 I~rL~~mGF~~~~a~~Al~a~~-~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 8 IERLKALGFPESLVIQAYFACE-KNENLAANFLLS 41 (47)
T ss_dssp HTTTTTTTCCHHHHHHHHTTTT-SCHHHHHHHTTS
T ss_pred HHHHHHcCCCHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 6789999999999999999998 699999999986
No 273
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=94.93 E-value=0.034 Score=52.21 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|. .++++|+++.+++..+.+.. .+..++.+|+.++... +.+|
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD 108 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID 108 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence 467899999999999999999875 58999999999888776532 3566788898887532 3688
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+....
T Consensus 109 ~v~~~~~ 115 (220)
T 3hnr_A 109 TIVSTYA 115 (220)
T ss_dssp EEEEESC
T ss_pred EEEECcc
Confidence 8887643
No 274
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=94.88 E-value=0.049 Score=51.78 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=53.5
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|. ..++++|+++.+++..+.+... .+..++.+|+.++... .+.+|
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~--------~~~fD 109 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLP--------QDSFD 109 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCC--------TTCEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCC--------CCCce
Confidence 457899999999999999999885 2689999999998887765321 2345677777765411 13577
Q ss_pred EEEEcC
Q 008350 523 LVIGGS 528 (569)
Q Consensus 523 lliGGp 528 (569)
+|+...
T Consensus 110 ~v~~~~ 115 (243)
T 3bkw_A 110 LAYSSL 115 (243)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 777654
No 275
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=94.86 E-value=0.019 Score=42.63 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.8
Q ss_pred ccccccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFS-EEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~-~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++++|||+ ...+.+|++..+. |.+.-+|+|+.
T Consensus 11 i~~L~~MGF~d~~~~~~AL~~~~g-nv~~Ave~L~~ 45 (46)
T 2bwb_A 11 LRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 45 (46)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTT-CHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHc
Confidence 5689999995 7789999999976 99999999985
No 276
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=94.86 E-value=0.038 Score=54.86 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=58.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+=||.|.++. +.+.+ + ..|+++|+++..+..++.+... .++..++++|+.++....+.. ..+..
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~--~~~v~~i~~D~~~~~~~~~~~---~~~~~ 91 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGELAE---KMGQP 91 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHHHH---HHTSC
T ss_pred CCcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhcc--CCceEEEECchhhCCHHHhhc---ccCCc
Confidence 345789999999999999 87642 1 1289999999999888765432 235678899999987543310 01346
Q ss_pred eEEEEcCCCC
Q 008350 522 DLVIGGSPCN 531 (569)
Q Consensus 522 DlliGGpPCQ 531 (569)
++|++.+|=.
T Consensus 92 ~~vvsNlPY~ 101 (252)
T 1qyr_A 92 LRVFGNLPYN 101 (252)
T ss_dssp EEEEEECCTT
T ss_pred eEEEECCCCC
Confidence 8999999954
No 277
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=94.85 E-value=0.019 Score=57.72 Aligned_cols=82 Identities=20% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-------CCCCcccccccccccchh-hHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-------NQKGTLIDFADVQQLDAN-RIEQ 513 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-------N~~~~~~~~~DI~~i~~~-~l~~ 513 (569)
+.+.+|||+-||.|++...+.+.+. ..++++|+++.+++..+.++... +..+..++++|+.++... .+.
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~- 109 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR- 109 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS-
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc-
Confidence 4567899999999999998887654 47999999999988877765432 122455778888876410 010
Q ss_pred HHhccCCeeEEEEcC
Q 008350 514 MINAFGGFDLVIGGS 528 (569)
Q Consensus 514 ~~~~~g~~DlliGGp 528 (569)
...+.+|+|+...
T Consensus 110 --~~~~~fD~V~~~~ 122 (313)
T 3bgv_A 110 --DPQMCFDICSCQF 122 (313)
T ss_dssp --STTCCEEEEEEET
T ss_pred --cCCCCEEEEEEec
Confidence 0013688888754
No 278
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.84 E-value=0.016 Score=48.37 Aligned_cols=37 Identities=30% Similarity=0.468 Sum_probs=33.1
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+++.+.||+...+ .|.+.=+|.|+....
T Consensus 33 i~~L~~MGF~~~~a~~AL~~t~-~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 33 LRQLTEMGFPENRATKALQLNH-MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTT-SCHHHHHHHHHHGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHhC-CCHHHHHHHHHHCCC
Confidence 5789999999999999999994 599999999998654
No 279
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=94.84 E-value=0.017 Score=68.08 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=37.1
Q ss_pred eccCccccCCcccceeeccCCCCccccCCcccceeeccccccccccc
Q 008350 383 VGRNKLAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDT 429 (569)
Q Consensus 383 vg~~~~~~l~~~e~E~l~GfP~~~t~~~~~s~t~R~k~lgn~fqvnt 429 (569)
+++...+.|+..|..+|+|||++|.+ .++.+.+++++||++.+..
T Consensus 942 ~Hp~~~R~lt~rE~arlQ~fPd~~~f--~g~~~~~~~qiGNaVp~~~ 986 (1002)
T 3swr_A 942 LHPEQHRVVSVRECARSQGFPDTYRL--FGNILDKHRQVGNAVPPPL 986 (1002)
T ss_dssp BCSSSSSBCCHHHHHHHTTCCTTCCC--CSSHHHHHHHHHHSCCHHH
T ss_pred cCcccccCCCHHHHHHhCCCCcceEE--cCChHHHheeeeccCCHHH
Confidence 34555688888999999999999988 4578888999999988754
No 280
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=94.82 E-value=0.033 Score=42.68 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhh
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSAL 89 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~ 89 (569)
+...+..+..|+.|||+.+.|.+|+..... |++..-+.|+.|-..
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~N-dv~~AtNiLlEf~~~ 48 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQN-NIEMAKNILREFVSI 48 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CSHHHHHHHHHSCCC
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcc-cHHHHHHHHHHHHcc
Confidence 344566799999999999999999998876 668888888877543
No 281
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.79 E-value=0.016 Score=48.70 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=32.0
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.+|++|||+++.+.+|++. +..|.+.-+|+|+....
T Consensus 25 I~qL~~MGF~~~~a~~AL~~-~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 25 IKQLTDMGFPREPAEEALKS-NNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHTCCHHHHHHHHHH-TTSCHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCHHHHHHHHHH-cCCCHHHHHHHHHHCcC
Confidence 67899999999999999954 56699999999998654
No 282
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=94.77 E-value=0.025 Score=58.48 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=59.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+|||+-||.|++...+.+.. ....|.++|+++.+++..+.|+... +.+...++.+|+.++... + .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~-~-----~ 191 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-A-----A 191 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-S-----C
T ss_pred CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh-c-----c
Confidence 456789999999999999998763 1247999999999999998876532 234566778887654211 0 0
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
.+.+|+|+..++
T Consensus 192 ~~~fDlIi~d~~ 203 (334)
T 1xj5_A 192 EGSYDAVIVDSS 203 (334)
T ss_dssp TTCEEEEEECCC
T ss_pred CCCccEEEECCC
Confidence 147999999765
No 283
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=94.76 E-value=0.023 Score=56.98 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=56.1
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhcc
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
..+.+.+|||+-||.|.+...+..+...-..|+++|+++.++...+.+....+..+ ..++.+|+.++...
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------- 185 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR--------- 185 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC---------
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc---------
Confidence 34567889999999999999884221111368999999999998888765433322 45778888876421
Q ss_pred CCeeEEEEcC
Q 008350 519 GGFDLVIGGS 528 (569)
Q Consensus 519 g~~DlliGGp 528 (569)
+.+|+|+...
T Consensus 186 ~~fD~v~~~~ 195 (305)
T 3ocj_A 186 EGYDLLTSNG 195 (305)
T ss_dssp SCEEEEECCS
T ss_pred CCeEEEEECC
Confidence 3678777543
No 284
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=94.76 E-value=0.023 Score=57.96 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc-----CCCCcccccccccccchhhHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT-----NQKGTLIDFADVQQLDANRIEQMIN 516 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~-----N~~~~~~~~~DI~~i~~~~l~~~~~ 516 (569)
+.+.+||++-||.|++...+.+.. ....|.++|+++..++..+.++... +.+...++.+|+.+....
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER------- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH-------
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh-------
Confidence 566789999999999999988762 1247999999999999988876542 134566778888764211
Q ss_pred ccCCeeEEEEcCCC
Q 008350 517 AFGGFDLVIGGSPC 530 (569)
Q Consensus 517 ~~g~~DlliGGpPC 530 (569)
..+.+|+|+..++.
T Consensus 148 ~~~~fD~Ii~d~~~ 161 (314)
T 1uir_A 148 TEERYDVVIIDLTD 161 (314)
T ss_dssp CCCCEEEEEEECCC
T ss_pred cCCCccEEEECCCC
Confidence 12579999998775
No 285
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=94.75 E-value=0.077 Score=49.26 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=54.2
Q ss_pred CCCCcceeccccChhHHH-HHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 441 YPDGINVLSLFSGIGGAE-VALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~s-lGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+.+.+|||+-||.|.+. ..+.+.|. .++++|+++.+.+..+.+....+ .+..++.+|+.++... .+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~--------~~ 88 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPFK--------DE 88 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCSC--------TT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCCC--------CC
Confidence 345678999999999863 44456675 58999999999988887654433 3456778888876421 14
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 89 ~fD~v~~~~ 97 (209)
T 2p8j_A 89 SMSFVYSYG 97 (209)
T ss_dssp CEEEEEECS
T ss_pred ceeEEEEcC
Confidence 689888754
No 286
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=94.75 E-value=0.039 Score=55.92 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=58.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh----cCCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ----TNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~----~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+|||+-||.|++...+.+.. ....|.++|+++.+++..+.++.. ...+...++.+|+.++.... .
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------~ 166 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT------P 166 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS------C
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc------c
Confidence 456789999999999999988763 125799999999999988877532 12345667778876553210 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..+|.
T Consensus 167 ~~~fDvIi~d~~~ 179 (304)
T 3bwc_A 167 DNTYDVVIIDTTD 179 (304)
T ss_dssp TTCEEEEEEECC-
T ss_pred CCceeEEEECCCC
Confidence 2579999997764
No 287
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=94.68 E-value=0.035 Score=53.43 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
....+.+++.|++|||+++.|..|+..++- |.+..+|.|+.
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~~w-d~~~A~e~L~~ 200 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSKSW-DVETATELLLS 200 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 334578899999999999999999999987 67999999985
No 288
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.61 E-value=0.015 Score=44.68 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=33.1
Q ss_pred ccccccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGF-SEEVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf-~~~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
+.+|.+||| ..++-.+|++.+|. |.+..++.||....
T Consensus 13 L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~~~ 50 (54)
T 2cp8_A 13 MAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQLSG 50 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhccC
Confidence 467899999 99999999999987 99999999998554
No 289
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=94.59 E-value=0.022 Score=55.35 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=59.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+=||.|..+.-+.+.+. ..+++||+++...+.++.+....+ ....++.+|..++... ++ .+.|
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~-~~-----~~~F 129 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT-LP-----DGHF 129 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG-SC-----TTCE
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc-cc-----ccCC
Confidence 4678999999999999999888764 578999999999988887754432 2344666776655422 11 1579
Q ss_pred eEEEEcCCCCcc
Q 008350 522 DLVIGGSPCNNL 533 (569)
Q Consensus 522 DlliGGpPCQ~f 533 (569)
|.|+.......+
T Consensus 130 D~i~~D~~~~~~ 141 (236)
T 3orh_A 130 DGILYDTYPLSE 141 (236)
T ss_dssp EEEEECCCCCBG
T ss_pred ceEEEeeeeccc
Confidence 999876543333
No 290
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=94.56 E-value=0.047 Score=51.67 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=45.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i 506 (569)
.+.+|||+-||.|.++..+.+.|. .|+++|+++.+++..+.++.. +..++.+|+.++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~ 98 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA 98 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence 456899999999999999999885 589999999999888765321 455677777765
No 291
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=94.54 E-value=0.035 Score=56.93 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc----CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT----NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~----N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+||++-||.|++...+.+.. ....|.++|+++.+++..+.++... +.+...++.+|+.+.... .
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~-------~ 178 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-------H 178 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-------C
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-------c
Confidence 456789999999999999988763 1257999999999999999886532 134456777777654211 1
Q ss_pred cCCeeEEEEcCCC
Q 008350 518 FGGFDLVIGGSPC 530 (569)
Q Consensus 518 ~g~~DlliGGpPC 530 (569)
.+.+|+|+..++.
T Consensus 179 ~~~fD~Ii~d~~~ 191 (314)
T 2b2c_A 179 KNEFDVIITDSSD 191 (314)
T ss_dssp TTCEEEEEECCC-
T ss_pred CCCceEEEEcCCC
Confidence 2579999998764
No 292
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=94.51 E-value=0.03 Score=57.78 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=58.2
Q ss_pred CcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 444 GINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+++||+|-||.|++..-+.+. +. .+.+||+++..++..+.|+.....+...++++|..++... . ..+.+
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~-~-----~~~~f 160 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES-F-----TPASR 160 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT-C-----CTTCE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh-c-----cCCCC
Confidence 469999999999999988873 44 5789999999999999886543344566788888765321 1 01579
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+...+.
T Consensus 161 DvIi~D~~~ 169 (317)
T 3gjy_A 161 DVIIRDVFA 169 (317)
T ss_dssp EEEEECCST
T ss_pred CEEEECCCC
Confidence 999997544
No 293
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=94.51 E-value=0.011 Score=58.00 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=60.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+..+|||+.||.|..++.+.++--.-..|+++|+++.+.+..+.++...+.. ...++.+|+.++......+ ...+.+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~--~~~~~f 137 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNE--GGEHQF 137 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHH--HCSSCE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhc--cCCCCE
Confidence 3568999999999999999884210136999999998877777777655543 4567788887654321110 012679
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|+|+...++..
T Consensus 138 D~V~~d~~~~~ 148 (242)
T 3r3h_A 138 DFIFIDADKTN 148 (242)
T ss_dssp EEEEEESCGGG
T ss_pred eEEEEcCChHH
Confidence 99998877544
No 294
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=94.47 E-value=0.024 Score=56.29 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=55.7
Q ss_pred ccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhcc
Q 008350 439 EMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 439 ~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
...+.+-+|||+=||.|.++..|.+.|. .|+++|+++..++..+ .+++..+..+|+.++....
T Consensus 35 ~~~~~~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~~~-------- 97 (257)
T 4hg2_A 35 EVAPARGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGLPP-------- 97 (257)
T ss_dssp HHSSCSSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCC------CCTTEEEEECCTTCCCCCS--------
T ss_pred HhcCCCCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhh------hcCCceeehhhhhhhcccC--------
Confidence 3445667899999999999999999884 5899999998876543 3456778888988775321
Q ss_pred CCeeEEEEc
Q 008350 519 GGFDLVIGG 527 (569)
Q Consensus 519 g~~DlliGG 527 (569)
+.+|+|+.+
T Consensus 98 ~sfD~v~~~ 106 (257)
T 4hg2_A 98 ASVDVAIAA 106 (257)
T ss_dssp SCEEEEEEC
T ss_pred CcccEEEEe
Confidence 578999874
No 295
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=94.45 E-value=0.06 Score=52.04 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=43.7
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ 493 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~ 493 (569)
.+..-+|+||=||.|.+++.+....-.. .++|+|+++.+++..+.+....+.
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~ 98 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKT 98 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCC
Confidence 3557899999999999999998875444 899999999999999998765443
No 296
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=94.42 E-value=0.058 Score=51.10 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=52.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+.+.+. .+.++|+++.+++..+.+ .++..++.+|+.++.. . +.+
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---~------~~~ 101 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKR-----LPDATLHQGDMRDFRL---G------RKF 101 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHH-----CTTCEEEECCTTTCCC---S------SCE
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHh-----CCCCEEEECCHHHccc---C------CCC
Confidence 5567899999999999999998874 689999999998887754 2345667778776542 1 467
Q ss_pred eEEEE
Q 008350 522 DLVIG 526 (569)
Q Consensus 522 DlliG 526 (569)
|+|+.
T Consensus 102 D~v~~ 106 (239)
T 3bxo_A 102 SAVVS 106 (239)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 77774
No 297
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=94.40 E-value=0.072 Score=52.73 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=57.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+-||.|.+...+.+..-.-..|+++|+++.+....+.+....+ .+..+..+|+.++... +.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~~---------~~f 90 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIELN---------DKY 90 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCCS---------SCE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCcC---------CCe
Confidence 457899999999999999998861100368999999999988887654332 2566788898876531 468
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+....
T Consensus 91 D~v~~~~~ 98 (284)
T 3gu3_A 91 DIAICHAF 98 (284)
T ss_dssp EEEEEESC
T ss_pred eEEEECCh
Confidence 88887653
No 298
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.085 Score=52.45 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhc--CCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQT--NQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~--N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+|||+-||.|.+...+.+. +. ..|+++|+++..++..+.+.... ..++..++.+|+.++....-.. + .
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~-~ 110 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPF--EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS-V-D 110 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCC--SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT-T-T
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC--CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc-c-c
Confidence 35788999999999999999852 22 47999999999998888765443 2456678899998875321000 0 0
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
.+.+|+|+....
T Consensus 111 ~~~fD~V~~~~~ 122 (299)
T 3g5t_A 111 KQKIDMITAVEC 122 (299)
T ss_dssp SSCEEEEEEESC
T ss_pred CCCeeEEeHhhH
Confidence 147999988654
No 299
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=94.33 E-value=0.052 Score=53.53 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|+||-||.|.++..+.+. |-. -.|+++|+++...+.++.+.. ..++...+.+|+.....-.. ....
T Consensus 76 kpG~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~--~~~ni~~V~~d~~~p~~~~~-----~~~~ 147 (233)
T 4df3_A 76 KEGDRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVR--DRRNIFPILGDARFPEKYRH-----LVEG 147 (233)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHST--TCTTEEEEESCTTCGGGGTT-----TCCC
T ss_pred CCCCEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhH--hhcCeeEEEEeccCcccccc-----ccce
Confidence 45789999999999999999874 322 379999999999888776643 23456667778776542211 1257
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|+|+...+.-.
T Consensus 148 vDvVf~d~~~~~ 159 (233)
T 4df3_A 148 VDGLYADVAQPE 159 (233)
T ss_dssp EEEEEECCCCTT
T ss_pred EEEEEEeccCCh
Confidence 899987776543
No 300
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=94.29 E-value=0.071 Score=49.76 Aligned_cols=74 Identities=23% Similarity=0.088 Sum_probs=53.8
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
....+.+.+|||+-||.|.+...+ |. ..++++|+++.+.+..+.+. ++..++.+|+.++...
T Consensus 31 ~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~-------- 92 (211)
T 2gs9_A 31 KGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFP-------- 92 (211)
T ss_dssp HTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSC--------
T ss_pred HHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCC--------
Confidence 333446789999999999998877 54 36899999999988877652 4556778888776421
Q ss_pred cCCeeEEEEcCC
Q 008350 518 FGGFDLVIGGSP 529 (569)
Q Consensus 518 ~g~~DlliGGpP 529 (569)
.+.+|+|+....
T Consensus 93 ~~~fD~v~~~~~ 104 (211)
T 2gs9_A 93 GESFDVVLLFTT 104 (211)
T ss_dssp SSCEEEEEEESC
T ss_pred CCcEEEEEEcCh
Confidence 146898886543
No 301
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=94.25 E-value=0.084 Score=52.20 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=54.4
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++.+++..+.+....+. +...++.+|+.++... .+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~ 149 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE--------DN 149 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC--------TT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCC--------CC
Confidence 45679999999999999998886 64 589999999998877776544333 2355677888766421 13
Q ss_pred CeeEEEEc
Q 008350 520 GFDLVIGG 527 (569)
Q Consensus 520 ~~DlliGG 527 (569)
.+|+|+..
T Consensus 150 ~fD~v~~~ 157 (297)
T 2o57_A 150 SYDFIWSQ 157 (297)
T ss_dssp CEEEEEEE
T ss_pred CEeEEEec
Confidence 56777654
No 302
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.24 E-value=0.046 Score=54.11 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=39.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
+.+-.|||.|||.|+..++..+.|. .++++|+++.++...+.++.
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr---~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHHHH
Confidence 3466899999999999999999994 68999999999998887654
No 303
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=94.22 E-value=0.09 Score=52.70 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=53.2
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+-||.|++...+.+. |. .|+++|+++..++..+.+....+.. ...+..+|+.++. +
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 154 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------E 154 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------C
Confidence 45678999999999999988876 75 6899999999998888765543322 3456677776653 3
Q ss_pred CeeEEEEc
Q 008350 520 GFDLVIGG 527 (569)
Q Consensus 520 ~~DlliGG 527 (569)
.+|+|+..
T Consensus 155 ~fD~v~~~ 162 (318)
T 2fk8_A 155 PVDRIVSI 162 (318)
T ss_dssp CCSEEEEE
T ss_pred CcCEEEEe
Confidence 56776654
No 304
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=94.05 E-value=0.069 Score=51.40 Aligned_cols=64 Identities=11% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i 506 (569)
.+.+|||+-||.|..+..+.+..-....|+++|+++.+.+..+.++...+..+ ..++.+|+.+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence 35689999999999999988762101368999999999998888876544433 45667776653
No 305
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=94.02 E-value=0.075 Score=52.27 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=52.2
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
..+.+|||+-||.|+++.-+.+. |-. -.|+|+|+++.....+...... .++..++.+|++...... . ..+.
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~~--~---~~~~ 146 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSYK--S---VVEN 146 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGTT--T---TCCC
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhhh--c---cccc
Confidence 45789999999999999888763 311 2699999999875433322211 245667788887643211 0 0247
Q ss_pred eeEEEEcCC
Q 008350 521 FDLVIGGSP 529 (569)
Q Consensus 521 ~DlliGGpP 529 (569)
+|+|+.+-|
T Consensus 147 ~D~I~~d~a 155 (232)
T 3id6_C 147 VDVLYVDIA 155 (232)
T ss_dssp EEEEEECCC
T ss_pred eEEEEecCC
Confidence 898887654
No 306
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=94.00 E-value=0.098 Score=50.24 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=55.8
Q ss_pred CCCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+-||.|.++..+.+. +. .++++|+++...+..+.+ .++..++.+|+.++. . .+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~-~--------~~ 94 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK-P--------AQ 94 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC-C--------SS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC-c--------cC
Confidence 34678999999999999998887 54 589999999998877754 345667888888765 1 14
Q ss_pred CeeEEEEcCCCC
Q 008350 520 GFDLVIGGSPCN 531 (569)
Q Consensus 520 ~~DlliGGpPCQ 531 (569)
.+|+|+.....+
T Consensus 95 ~fD~v~~~~~l~ 106 (259)
T 2p35_A 95 KADLLYANAVFQ 106 (259)
T ss_dssp CEEEEEEESCGG
T ss_pred CcCEEEEeCchh
Confidence 688888765433
No 307
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=93.99 E-value=0.029 Score=49.84 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=54.0
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~g 519 (569)
..+.+|+|+.||.|+++..+.+. |-. ..++++|+++ ... .++..++.+|+.+... +.+...+ ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~-~~~ 87 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERV-GDS 87 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccC-CCC
Confidence 45678999999999999988876 422 3689999998 432 1345567888877641 1122111 125
Q ss_pred CeeEEEEcCCCCcc
Q 008350 520 GFDLVIGGSPCNNL 533 (569)
Q Consensus 520 ~~DlliGGpPCQ~f 533 (569)
.+|+|+..+|+..+
T Consensus 88 ~~D~i~~~~~~~~~ 101 (180)
T 1ej0_A 88 KVQVVMSDMAPNMS 101 (180)
T ss_dssp CEEEEEECCCCCCC
T ss_pred ceeEEEECCCcccc
Confidence 79999999998754
No 308
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.96 E-value=0.047 Score=41.99 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=33.2
Q ss_pred hHHHHHHHhCCC-CHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 48 SKLIDHFVGMGF-SVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 48 ~~~~~~~~~MGF-~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
...+.+|.+||| ..++-.+|++++|. +++++|+.||..
T Consensus 10 a~~L~~L~eMGF~D~~~N~~aL~~~~g-nv~~aI~~Ll~~ 48 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQLNLRLLKKHNY-NILQVVTELLQL 48 (54)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHTTTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhc
Confidence 346889999999 89999999999986 789999999974
No 309
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=93.96 E-value=0.11 Score=50.56 Aligned_cols=77 Identities=25% Similarity=0.255 Sum_probs=56.2
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+.+|||+-||.|.+...+.+. |. .|+++|+++..++..+.+....+.+ ...+..+|+.++... .+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~ 128 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE--------DA 128 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC--------TT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC--------CC
Confidence 35679999999999999988774 53 6899999999988887766544433 355778888776421 14
Q ss_pred CeeEEEEcCC
Q 008350 520 GFDLVIGGSP 529 (569)
Q Consensus 520 ~~DlliGGpP 529 (569)
.+|+|+....
T Consensus 129 ~fD~v~~~~~ 138 (273)
T 3bus_A 129 SFDAVWALES 138 (273)
T ss_dssp CEEEEEEESC
T ss_pred CccEEEEech
Confidence 6888876543
No 310
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.95 E-value=0.04 Score=41.86 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=28.5
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++|+|||+.+-|.+|++.... |.+.--..||.
T Consensus 15 Ia~Lm~mGFsr~~ai~AL~~a~n-nve~AaniLle 48 (52)
T 2ooa_A 15 IAKLMGEGYAFEEVKRALEIAQN-NVEVARSILRE 48 (52)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 67899999999999999999854 88876666664
No 311
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.94 E-value=0.038 Score=42.40 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.0
Q ss_pred ccccccCCCCH-HHHHHHHHHhCCCCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSE-EVVAKAIQENGEQNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~-~~v~k~i~e~g~~~~~~ile~ll~~~~ 39 (569)
|.++++|||+. ..+.+|++..+. |.+.-+|.|+....
T Consensus 13 l~~L~~MGF~d~~~n~~AL~~~~G-dv~~Ave~L~~~~~ 50 (54)
T 2dah_A 13 LEQLRSMGFLNREANLQALIATGG-DVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCC
Confidence 56899999955 568999999976 99999999997543
No 312
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=93.88 E-value=0.13 Score=49.52 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=58.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhcc--CC
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAF--GG 520 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~--g~ 520 (569)
..+|||+-||.|..++.+.++--.-..++++|+++.+.+..+.++...+..+ ..++.+|+.+.. +.+.... +.
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l----~~l~~~~~~~~ 148 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL----EQLTQGKPLPE 148 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH----HHHHTSSSCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHHhcCCCCC
Confidence 4589999999999999998862100268999999999998888876554432 445667765432 2211111 57
Q ss_pred eeEEEEcCCCC
Q 008350 521 FDLVIGGSPCN 531 (569)
Q Consensus 521 ~DlliGGpPCQ 531 (569)
+|+|+...++.
T Consensus 149 fD~V~~d~~~~ 159 (232)
T 3cbg_A 149 FDLIFIDADKR 159 (232)
T ss_dssp EEEEEECSCGG
T ss_pred cCEEEECCCHH
Confidence 99999887654
No 313
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.85 E-value=0.041 Score=45.05 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=31.3
Q ss_pred ccccccCCC-CHHHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 2 IDHFVGMGF-SEEVVAKAIQENGEQNTDLILEALLKH 37 (569)
Q Consensus 2 ~~~~~~MGf-~~~~v~k~i~e~g~~~~~~ile~ll~~ 37 (569)
|.++++||| .++.+.+|++..+. |.+.-+|+|+..
T Consensus 33 i~qL~eMGF~dr~~~~~AL~~t~G-nve~Ave~L~~~ 68 (74)
T 1vej_A 33 LEELKALGFANRDANLQALVATDG-DIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHTC
T ss_pred HHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHhC
Confidence 578999999 58999999999975 999999999984
No 314
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.83 E-value=0.035 Score=43.28 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=30.3
Q ss_pred ccccccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFS-EEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~-~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|.++++|||. .+.+.+|++..+. |.+.-+|+|+.
T Consensus 21 i~~L~~MGF~d~~~~~~AL~~~~g-nve~Ave~L~~ 55 (58)
T 1wr1_B 21 LRQLNDMGFFDFDRNVAALRRSGG-SVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 5689999995 8899999999976 99999999986
No 315
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=93.80 E-value=0.14 Score=49.80 Aligned_cols=72 Identities=25% Similarity=0.208 Sum_probs=54.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.++..+.+.|. .++++|+++.+++..+.+.. . .++.+|+.++... .+.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~-----~-~~~~~d~~~~~~~--------~~~f 115 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGV-----K-NVVEAKAEDLPFP--------SGAF 115 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTC-----S-CEEECCTTSCCSC--------TTCE
T ss_pred CCCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcC-----C-CEEECcHHHCCCC--------CCCE
Confidence 4567899999999999999999885 58999999999988776521 2 2677888776521 1579
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+.....
T Consensus 116 D~v~~~~~~ 124 (260)
T 2avn_A 116 EAVLALGDV 124 (260)
T ss_dssp EEEEECSSH
T ss_pred EEEEEcchh
Confidence 999875443
No 316
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=93.73 E-value=0.089 Score=52.59 Aligned_cols=44 Identities=23% Similarity=0.262 Sum_probs=36.7
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~ 488 (569)
.+.+|||+-||.|.+++.+.+. +- ..|+++|+++.+++.++.+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~ 90 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNI 90 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHH
Confidence 4678999999999999998886 22 37899999999988887654
No 317
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=93.72 E-value=0.063 Score=52.88 Aligned_cols=77 Identities=27% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC----CCCcccccccccccchhhHHHHHhcc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN----QKGTLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N----~~~~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
.+.+|||+-||.|.+...+.+.|. .|+++|+++.+.+..+.+....+ .....+..+|+.++..+ + -..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~----~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD-V----PAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-S----CCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc-c----ccC
Confidence 457899999999999999999986 68999999999887776532111 12233456666655311 1 012
Q ss_pred CCeeEEEEc
Q 008350 519 GGFDLVIGG 527 (569)
Q Consensus 519 g~~DlliGG 527 (569)
+.+|+|+..
T Consensus 129 ~~fD~V~~~ 137 (293)
T 3thr_A 129 DGFDAVICL 137 (293)
T ss_dssp TCEEEEEEC
T ss_pred CCeEEEEEc
Confidence 579999963
No 318
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=93.67 E-value=0.14 Score=50.27 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=52.5
Q ss_pred CCCcceeccccChhHHHHHHH-HcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALH-RLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~-~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+-||.|++...+. +.|. .|.++|+++..++..+.+....+. +...+..+|+.++. +
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~ 128 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E 128 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence 456789999999999999887 5564 689999999998888776543332 24456677776553 3
Q ss_pred CeeEEEEc
Q 008350 520 GFDLVIGG 527 (569)
Q Consensus 520 ~~DlliGG 527 (569)
.+|+|+..
T Consensus 129 ~fD~v~~~ 136 (287)
T 1kpg_A 129 PVDRIVSI 136 (287)
T ss_dssp CCSEEEEE
T ss_pred CeeEEEEe
Confidence 56777654
No 319
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=93.64 E-value=0.1 Score=45.66 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=33.3
Q ss_pred hhHHHHHHHhCCCC-HHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 47 KSKLIDHFVGMGFS-VDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 47 ~~~~~~~~~~MGF~-~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
....+.+|.+|||. ++.+.+||..+|. |++..||.|+.
T Consensus 66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~ 104 (108)
T 2cwb_A 66 WQPQLQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA 104 (108)
T ss_dssp THHHHHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 36678999999995 5799999999995 78999999986
No 320
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=93.60 E-value=0.055 Score=50.53 Aligned_cols=75 Identities=23% Similarity=0.205 Sum_probs=51.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.+...+.+.|. .|+++|+++.+++..+.+ ....+...|+.++...... ....+|
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~----~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVP----VGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSC----CCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccc----cCCCcc
Confidence 357899999999999999999985 589999999998877753 2344556666555211000 113488
Q ss_pred EEEEcCCC
Q 008350 523 LVIGGSPC 530 (569)
Q Consensus 523 lliGGpPC 530 (569)
+|+.....
T Consensus 119 ~v~~~~~l 126 (227)
T 3e8s_A 119 LICANFAL 126 (227)
T ss_dssp EEEEESCC
T ss_pred EEEECchh
Confidence 88776543
No 321
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.60 E-value=0.059 Score=43.25 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.6
Q ss_pred ccccccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHhccccc
Q 008350 2 IDHFVGMGFS-EEVVAKAIQENGEQNTDLILEALLKHSASS 41 (569)
Q Consensus 2 ~~~~~~MGf~-~~~v~k~i~e~g~~~~~~ile~ll~~~~~~ 41 (569)
+.++.+|||. .+.+.+|++..+. |.+.-+|+|+......
T Consensus 23 l~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 23 MECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHCCSSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhCCCcc
Confidence 5678999995 5677999999975 9999999999976543
No 322
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=93.51 E-value=0.14 Score=52.31 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=56.4
Q ss_pred cCCCCcceeccccChhHHH-HHHHH-cCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhc
Q 008350 440 MYPDGINVLSLFSGIGGAE-VALHR-LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~s-lGl~~-aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
..+.+.+|||+=||.||++ +-+.+ .|. .|+++|+++.+.+..+.+....+..+..++.+|+.++. .
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d-------- 186 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-G-------- 186 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-G--------
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-C--------
Confidence 3456789999999998876 44444 464 69999999999999888876655555678889988764 1
Q ss_pred cCCeeEEEE
Q 008350 518 FGGFDLVIG 526 (569)
Q Consensus 518 ~g~~DlliG 526 (569)
+.||+|+.
T Consensus 187 -~~FDvV~~ 194 (298)
T 3fpf_A 187 -LEFDVLMV 194 (298)
T ss_dssp -CCCSEEEE
T ss_pred -CCcCEEEE
Confidence 57999985
No 323
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.079 Score=50.77 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~ 486 (569)
.+.+.+|||+-||.|.+...+.+.|. .|+++|+++.+.+..+.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~ 81 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEG 81 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHT
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHh
Confidence 45568899999999999999999886 47999999998877653
No 324
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=93.34 E-value=0.16 Score=49.90 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+.+|||+-||.|.++..+.+.|. .|+++|+++..++..+.++ ++..+..+|+.++.. . +.+|
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---~------~~fD 119 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---D------KPLD 119 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---S------SCEE
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---C------CCcC
Confidence 457899999999999999998774 6899999999988777542 456677888877652 1 4678
Q ss_pred EEEEcCC
Q 008350 523 LVIGGSP 529 (569)
Q Consensus 523 lliGGpP 529 (569)
+|+....
T Consensus 120 ~v~~~~~ 126 (279)
T 3ccf_A 120 AVFSNAM 126 (279)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 8876543
No 325
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=93.20 E-value=0.058 Score=54.75 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=37.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT 491 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~ 491 (569)
+.+.+||||-||.|+....+.+.|. ..|+++|+++.+++.++..+...
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~ 94 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKL 94 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhc
Confidence 3467899999999986666666664 36999999999999888776543
No 326
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=93.13 E-value=0.16 Score=45.58 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=52.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|||+-||.|.+...+.+.+ ..++++|+++.+.+..+.+ .++..+..+| ..+. .+.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d-~~~~----------~~~~ 76 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP-KEIP----------DNSV 76 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG-GGSC----------TTCE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC-CCCC----------CCce
Confidence 356789999999999999999987 3799999999998887754 3455667777 2111 1468
Q ss_pred eEEEEcCC
Q 008350 522 DLVIGGSP 529 (569)
Q Consensus 522 DlliGGpP 529 (569)
|+|+....
T Consensus 77 D~v~~~~~ 84 (170)
T 3i9f_A 77 DFILFANS 84 (170)
T ss_dssp EEEEEESC
T ss_pred EEEEEccc
Confidence 99986543
No 327
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.07 E-value=0.091 Score=42.15 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCCHH-HHHHHHHHhCCCchhHHHHHHHHh
Q 008350 49 KLIDHFVGMGFSVD-MVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 49 ~~~~~~~~MGF~~~-~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
..+.+|.+|||... .+.+|+..++. |+++.||.|+..
T Consensus 21 ~ql~qL~~MGF~d~~an~~AL~at~G-nve~Ave~L~~~ 58 (67)
T 2dna_A 21 KEMECLQAMGFVNYNANLQALIATDG-DTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTS-CHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHcCC-CHHHHHHHHHhC
Confidence 46889999999655 55999999985 789999999974
No 328
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=92.99 E-value=0.15 Score=48.56 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=51.0
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.++..+.+.+-. ..|+++|+++.+.+.+...... ..+..++.+|+.....- .. ..+.+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~--~~~v~~~~~d~~~~~~~-~~----~~~~f 127 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRE--RNNIIPLLFDASKPWKY-SG----IVEKV 127 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHH--CSSEEEECSCTTCGGGT-TT----TCCCE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhc--CCCeEEEEcCCCCchhh-cc----cccce
Confidence 45678999999999998888765312 3699999999876544433222 22455667788764210 00 01579
Q ss_pred eEEEEc
Q 008350 522 DLVIGG 527 (569)
Q Consensus 522 DlliGG 527 (569)
|+|+..
T Consensus 128 D~V~~~ 133 (210)
T 1nt2_A 128 DLIYQD 133 (210)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 999876
No 329
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=92.99 E-value=0.2 Score=45.92 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=50.5
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCc-------eeEEEeeccCHHHHHHHHHHHhhcCCCCcccc-cccccccchh-h
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVR-------MKNVVSVDISEVNRNIVRSWWEQTNQKGTLID-FADVQQLDAN-R 510 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~-------~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~-~~DI~~i~~~-~ 510 (569)
+..+.+|||+.||.|+++..+.+. |-. -..|+++|+++.+ ..++..++ .+|+...... .
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence 345678999999999999998876 420 0268999999842 12345567 7887765322 1
Q ss_pred HHHHHhccCCeeEEEEcCCC
Q 008350 511 IEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpPC 530 (569)
+...+. .+.+|+|+...++
T Consensus 89 ~~~~~~-~~~fD~V~~~~~~ 107 (196)
T 2nyu_A 89 ILEVLP-GRRADVILSDMAP 107 (196)
T ss_dssp HHHHSG-GGCEEEEEECCCC
T ss_pred HHHhcC-CCCCcEEEeCCCC
Confidence 111111 1379999987644
No 330
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.96 E-value=0.06 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=29.7
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 2 IDHFVGMGFSEEVVAKAIQENGEQNTDLILEALLKH 37 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~ 37 (569)
|.++|+|||+++-|.||++.... |.|.--..|+.+
T Consensus 13 I~~L~~lGF~r~~ai~AL~~a~n-nve~Aa~iL~ef 47 (53)
T 2d9s_A 13 IERLMSQGYSYQDIQKALVIAHN-NIEMAKNILREF 47 (53)
T ss_dssp HHHHHHHTCCHHHHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhcC-CHHHHHHHHHHh
Confidence 57899999999999999999854 999877777654
No 331
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=92.96 E-value=0.11 Score=60.18 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=48.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh------cCCCCcccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ------TNQKGTLIDFADVQQLD 507 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~------~N~~~~~~~~~DI~~i~ 507 (569)
.+.+|||+-||.|.+...|.+.|-....|+++|+++.+++..+.+... .+.++..++.+|+.++.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 567899999999999999999873223699999999998887764321 13345567778877653
No 332
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=92.88 E-value=0.093 Score=52.25 Aligned_cols=73 Identities=14% Similarity=-0.024 Sum_probs=55.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh----cCCCCcccccccccccchhhHHHHHhc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ----TNQKGTLIDFADVQQLDANRIEQMINA 517 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~----~N~~~~~~~~~DI~~i~~~~l~~~~~~ 517 (569)
+.+.+||++-||.|++...+.+.+ ..|.++|+++...+..+.++.. ...+...++.+|..++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence 456789999999999998887774 4799999999998887766432 12344567778877654
Q ss_pred cCCeeEEEEcC
Q 008350 518 FGGFDLVIGGS 528 (569)
Q Consensus 518 ~g~~DlliGGp 528 (569)
+.+|+|+...
T Consensus 138 -~~fD~Ii~d~ 147 (262)
T 2cmg_A 138 -KKYDLIFCLQ 147 (262)
T ss_dssp -CCEEEEEESS
T ss_pred -hhCCEEEECC
Confidence 3689999885
No 333
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=92.70 E-value=0.16 Score=46.88 Aligned_cols=78 Identities=5% Similarity=0.090 Sum_probs=51.1
Q ss_pred CCCcceeccccChhHHHHHHHHcCCc-eeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccc-------------
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVR-MKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLD------------- 507 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~-~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~------------- 507 (569)
+.+.+|+||-||.|+++..+.+..-. -..|+++|+++.+ ..++..++.+|+.+..
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence 45678999999999999988765210 1368999999832 1234567778887654
Q ss_pred -----hhhHHHHHhccCCeeEEEEcCCCC
Q 008350 508 -----ANRIEQMINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 508 -----~~~l~~~~~~~g~~DlliGGpPCQ 531 (569)
...+...+ ..+.+|+|+.+.+++
T Consensus 90 ~~~~~~~~~~~~~-~~~~fD~v~~~~~~~ 117 (201)
T 2plw_A 90 NNNSVDYKLKEIL-QDKKIDIILSDAAVP 117 (201)
T ss_dssp --CHHHHHHHHHH-TTCCEEEEEECCCCC
T ss_pred cchhhHHHHHhhc-CCCcccEEEeCCCcC
Confidence 11111111 124799999887654
No 334
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=92.70 E-value=0.077 Score=49.98 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=45.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH----HhhcCCCCcccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW----WEQTNQKGTLIDFADVQQLD 507 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n----~~~~N~~~~~~~~~DI~~i~ 507 (569)
..+.+|||+-||.|.++..+.+.+-. ..|+++|+++.+.+.+..+ ....+.++..++++|+.++.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~ 94 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPS-RLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP 94 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTT-EEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence 35678999999999999999987311 4799999999866543222 11233445667788887654
No 335
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=92.64 E-value=0.18 Score=54.17 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=54.2
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHH-------HHHHhhcC--CCCcccccccccccchhhH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIV-------RSWWEQTN--QKGTLIDFADVQQLDANRI 511 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~-------~~n~~~~N--~~~~~~~~~DI~~i~~~~l 511 (569)
..+.+||||-||.|.+.+.+.+. |. ..|+++|+++.+.+.. +.+....+ ..+..++.+|..... ..+
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~-~~~ 317 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN-NRV 317 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC-HHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccc-ccc
Confidence 45678999999999999998885 53 3699999999987776 66654444 234555555433211 011
Q ss_pred HHHHhccCCeeEEEEcCCC
Q 008350 512 EQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 512 ~~~~~~~g~~DlliGGpPC 530 (569)
.. ..+.+|+|+.+..+
T Consensus 318 ~~---~~~~FDvIvvn~~l 333 (433)
T 1u2z_A 318 AE---LIPQCDVILVNNFL 333 (433)
T ss_dssp HH---HGGGCSEEEECCTT
T ss_pred cc---ccCCCCEEEEeCcc
Confidence 11 01468999876544
No 336
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.44 E-value=0.13 Score=44.63 Aligned_cols=38 Identities=13% Similarity=0.298 Sum_probs=33.4
Q ss_pred hhHHHHHHHhC-CCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 47 KSKLIDHFVGM-GFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 47 ~~~~~~~~~~M-GF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.+..|..|+.| ||++++|..|+.+|+- |++..++.|+.
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ng-Dl~~AI~~Lle 77 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNG-DVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 35678999999 9999999999999987 66888899985
No 337
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=92.21 E-value=0.12 Score=50.40 Aligned_cols=72 Identities=25% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+.+.|. .|+++|+++......+. .++..++.+|+.++... .+.+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~~--------~~~f 95 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVV------HPQVEWFTGYAENLALP--------DKSV 95 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCC------CTTEEEECCCTTSCCSC--------TTCB
T ss_pred CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHh------ccCCEEEECchhhCCCC--------CCCE
Confidence 4568899999999999999998874 68999999987764432 22566778888776521 1468
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+|+.....
T Consensus 96 D~v~~~~~l 104 (261)
T 3ege_A 96 DGVISILAI 104 (261)
T ss_dssp SEEEEESCG
T ss_pred eEEEEcchH
Confidence 888876543
No 338
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=91.92 E-value=0.14 Score=49.39 Aligned_cols=64 Identities=13% Similarity=-0.006 Sum_probs=45.0
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHH-H---HHHHHHhhcCCCCcccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNR-N---IVRSWWEQTNQKGTLIDFADVQQLD 507 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~-~---t~~~n~~~~N~~~~~~~~~DI~~i~ 507 (569)
.+-+|||+-||.|.+...+.+..-. ..|+++|+++.++ + ..+.+....+.++..+..+|+.++.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~-~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTT-EEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh
Confidence 4678999999999999998854322 4699999995544 2 2244433344556677888888874
No 339
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=91.81 E-value=0.32 Score=53.39 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=54.0
Q ss_pred CCcceeccccChhHHHHHHHHc----CC--------ceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhh
Q 008350 443 DGINVLSLFSGIGGAEVALHRL----GV--------RMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANR 510 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a----Gi--------~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~ 510 (569)
.+.+|+|-+||.|||=+...+. +- .-..++++|+++.+....+.|.-..+.....+.++|.-......
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~ 296 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE 296 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence 3568999999999997755321 10 01258999999999888777654444444445666654322111
Q ss_pred HHHHHhccCCeeEEEEcCCC
Q 008350 511 IEQMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpPC 530 (569)
. .....+|+|++-||=
T Consensus 297 ~----~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 297 M----GDKDRVDVILTNPPF 312 (530)
T ss_dssp C----CGGGCBSEEEECCCS
T ss_pred h----cccccceEEEecCCC
Confidence 0 011479999999995
No 340
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=91.48 E-value=0.32 Score=47.22 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=52.4
Q ss_pred CCCcceeccccChhHHHHHHHHc--CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL--GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a--Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
+.+.+|||+-||.|.+...+.+. |. .|+++|+++.+.+..+.+ .++..+..+|+.++... .+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~--------~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS--------DT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC--------TT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHh-----CCCcEEEEcchhhCCCC--------CC
Confidence 34678999999999999988886 53 689999999998877754 23455777887765421 14
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 148 ~fD~v~~~~ 156 (269)
T 1p91_A 148 SMDAIIRIY 156 (269)
T ss_dssp CEEEEEEES
T ss_pred ceeEEEEeC
Confidence 678887543
No 341
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=91.34 E-value=0.22 Score=49.75 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 44 SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
....+++++.|++|||+++.|..|+.++|- |.++.+|.|+.
T Consensus 212 ~~~~~~~v~~l~~mgf~~~~~~~al~~~nW-d~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAAGFDRNAVIVALSSKSW-DVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHTTT-CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 345578899999999999999999999987 67999999985
No 342
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=91.25 E-value=0.22 Score=51.85 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=56.4
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhc--------CCCCcccccccccccchh---h
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQT--------NQKGTLIDFADVQQLDAN---R 510 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~--------N~~~~~~~~~DI~~i~~~---~ 510 (569)
.+.+|||+-||.|.+...+.+. |-. -.|+++|+++.+.+..+.+.... ..++..++.+|+.++... .
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 4678999999999999988774 211 26999999999998888764322 114667888999876311 1
Q ss_pred HHHHHhccCCeeEEEEcC
Q 008350 511 IEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGp 528 (569)
++ .+.+|+|+...
T Consensus 162 ~~-----~~~fD~V~~~~ 174 (383)
T 4fsd_A 162 VP-----DSSVDIVISNC 174 (383)
T ss_dssp CC-----TTCEEEEEEES
T ss_pred CC-----CCCEEEEEEcc
Confidence 11 14799998764
No 343
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=91.00 E-value=0.3 Score=45.54 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=41.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
..+.+|||+-||.|.+...+.+.|. .++++|+++.+.+..+.+. ..+..+|+.+
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~ 84 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKL-------DHVVLGDIET 84 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTS-------SEEEESCTTT
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhC-------CcEEEcchhh
Confidence 3567899999999999999998873 6899999999887766431 1355666654
No 344
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=90.80 E-value=0.3 Score=47.56 Aligned_cols=37 Identities=32% Similarity=0.606 Sum_probs=31.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCc--------hhHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEEN--------TDSILETLL 84 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~--------~d~~le~Ll 84 (569)
.++++.|+.|||+++.|..|+.++|-+. .+++||.||
T Consensus 170 ~~~v~~~~~mg~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T 1tte_A 170 HDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANRIIEELL 214 (215)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcccchhhhhHHHHHHHHh
Confidence 5689999999999999999999998543 467788776
No 345
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=90.46 E-value=0.73 Score=46.79 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=58.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
.+-.++|.-||.||-+..+.+.+. .|+++|.++.|.+..+. ... +...+++++..++.. .+..+ ..+.+|
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~-~L~~~--g~~~vD 91 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKR-HLAAL--GVERVD 91 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHH-HHHHT--TCSCEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHH-HHHHc--CCCCcC
Confidence 345799999999999999998753 69999999999988775 432 345677777776642 22221 125799
Q ss_pred EEEEcCCCCc
Q 008350 523 LVIGGSPCNN 532 (569)
Q Consensus 523 lliGGpPCQ~ 532 (569)
.|+.+.....
T Consensus 92 gIL~DLGvSS 101 (285)
T 1wg8_A 92 GILADLGVSS 101 (285)
T ss_dssp EEEEECSCCH
T ss_pred EEEeCCcccc
Confidence 9999877643
No 346
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=90.40 E-value=0.3 Score=47.38 Aligned_cols=82 Identities=17% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHH------HHHHHHHHHhhcCC-CCccccccc-ccccchhhHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEV------NRNIVRSWWEQTNQ-KGTLIDFAD-VQQLDANRIE 512 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~------A~~t~~~n~~~~N~-~~~~~~~~D-I~~i~~~~l~ 512 (569)
+.+.+|||+-||.|.++..+.+. |-. ..|.++|+++. ..+..+.++...+. ++..++.+| +...... +.
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~-~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~ 119 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSS-GHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IA 119 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTT-CEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CC
Confidence 45678999999999999988876 422 26899999986 66666665543322 234566676 2222110 11
Q ss_pred HHHhccCCeeEEEEcCCC
Q 008350 513 QMINAFGGFDLVIGGSPC 530 (569)
Q Consensus 513 ~~~~~~g~~DlliGGpPC 530 (569)
.+.+|+|+...+.
T Consensus 120 -----~~~fD~v~~~~~l 132 (275)
T 3bkx_A 120 -----DQHFDRVVLAHSL 132 (275)
T ss_dssp -----TCCCSEEEEESCG
T ss_pred -----CCCEEEEEEccch
Confidence 1568888876544
No 347
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=90.37 E-value=0.28 Score=37.60 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=26.5
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
-++++..|+.|||+.+.|..|+..+..|-
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia~Ndv 35 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIAQNNI 35 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCS
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHhcccH
Confidence 35789999999999999999999999985
No 348
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.20 E-value=0.29 Score=42.42 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=26.3
Q ss_pred hHHHHHHHHhC-CCCHHHHHHHHHhcCCC
Q 008350 134 KEEKLVSLASM-GYSVQEASIAMERCGPN 161 (569)
Q Consensus 134 ~~~k~~~L~~M-gf~e~e~~~Ai~r~G~~ 161 (569)
.++++..|+.| ||++++|..|+..|+-|
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD 67 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGD 67 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCC
Confidence 46889999999 99999999999999998
No 349
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=90.12 E-value=1.6 Score=40.23 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=77.7
Q ss_pred cccccCCCCHHHHHHHHHHh---CCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHH
Q 008350 3 DHFVGMGFSEEVVAKAIQEN---GEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSI 79 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~---g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~ 79 (569)
..|...||+++.|..||... |=-|.....+..+..... .+-+.-.+...|..-|++.+.|..|++++.++-.+.+
T Consensus 39 ~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~--~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~de~e~a 116 (162)
T 3dfg_A 39 RKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS--SGYGPLHIRAELGTHGLDSDAVSAAMATFEGDWTENA 116 (162)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT--TTCCHHHHHHHHHHTTCCHHHHHHHHTTCCSCHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH--ccccHHHHHHHHHHcCCCHHHHHHHHHhCcHhHHHHH
Confidence 45677899999999988765 777777777777664433 2556667788999999999999999999864223333
Q ss_pred HHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 80 LETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 80 le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
. .|+.-.. .... . . ...++..-+..|+.=||+-+.+..||...
T Consensus 117 ~-~l~~Kk~-~~~~-~-~--------------------------------~~~~k~K~~~~L~rrGF~~~~I~~~l~~~ 159 (162)
T 3dfg_A 117 L-DLIRRRF-GEDG-P-V--------------------------------DLAQRRKAADLLARRGFDGNSIRLATRFD 159 (162)
T ss_dssp H-HHHHHHH-CTTC-C-C--------------------------------SHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred H-HHHHHhc-CCCC-C-C--------------------------------CHHHHHHHHHHHHHCCCCHHHHHHHHhcC
Confidence 3 3332111 1100 0 0 00122333589999999999999887643
No 350
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=89.97 E-value=0.32 Score=35.95 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=26.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 133 DKEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 133 ~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
+-++.+..|+.|||+.+.|..|+-.+..|-
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nni 32 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNI 32 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccH
Confidence 346789999999999999999999999883
No 351
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=89.22 E-value=0.27 Score=42.99 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=30.2
Q ss_pred ccccccCCCC-HHHHHHHHHHhCCCCHHHHHHHHHh
Q 008350 2 IDHFVGMGFS-EEVVAKAIQENGEQNTDLILEALLK 36 (569)
Q Consensus 2 ~~~~~~MGf~-~~~v~k~i~e~g~~~~~~ile~ll~ 36 (569)
|+++.+|||. ++.+.+|++..+. |.+.-+|+|+.
T Consensus 70 L~qL~eMGF~d~~~ni~AL~~t~G-dve~AVe~L~~ 104 (108)
T 2cwb_A 70 LQQLRDMGIQDDELSLRALQATGG-DIQAALELIFA 104 (108)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHhCC-CHHHHHHHHHh
Confidence 5688999995 5799999999986 99999999996
No 352
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=89.11 E-value=0.14 Score=49.25 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
.+.+|||+-||.|.++..+.+.|. ..|+++|+++.+++.++.+..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence 457899999999999998888875 479999999999988877653
No 353
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=89.05 E-value=0.4 Score=45.15 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=46.5
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
..+ +.+|||+-||.|.+...+.+. +++|+++.+++..+.+ +..++.+|+.++... .+
T Consensus 45 ~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~--------~~ 101 (219)
T 1vlm_A 45 LLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLK--------DE 101 (219)
T ss_dssp HCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSC--------TT
T ss_pred hCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCC--------CC
Confidence 334 678999999999998877554 8999999998877643 345667777665421 13
Q ss_pred CeeEEEEcC
Q 008350 520 GFDLVIGGS 528 (569)
Q Consensus 520 ~~DlliGGp 528 (569)
.+|+|+...
T Consensus 102 ~fD~v~~~~ 110 (219)
T 1vlm_A 102 SFDFALMVT 110 (219)
T ss_dssp CEEEEEEES
T ss_pred CeeEEEEcc
Confidence 577777543
No 354
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=88.68 E-value=1.2 Score=43.94 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=44.1
Q ss_pred ccccccCCCCHHHHHHHHHH----hCCC---CHHHHHHHHHhcccccC---------C---CCChh---HHHHHHHhCCC
Q 008350 2 IDHFVGMGFSEEVVAKAIQE----NGEQ---NTDLILEALLKHSASSS---------A---SSSKS---KLIDHFVGMGF 59 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e----~g~~---~~~~ile~ll~~~~~~~---------~---~ss~~---~~~~~~~~MGF 59 (569)
++.+.+||++...|.|...- .+-+ +....++.|..+-.+.. + +.+-+ ..++.|..+|+
T Consensus 9 l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~~Gl 88 (270)
T 3m66_A 9 LQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTRVAYLHSKNF 88 (270)
T ss_dssp HHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHcCC
Confidence 45677888888888777666 3432 23345555544322211 1 22233 34668889999
Q ss_pred CHHHHHHHHHHhC
Q 008350 60 SVDMVAKAIQENG 72 (569)
Q Consensus 60 ~~~~v~~Ai~~~G 72 (569)
+.+.+.+++.++-
T Consensus 89 s~~~i~~~l~~~P 101 (270)
T 3m66_A 89 SKADVAQMVRKAP 101 (270)
T ss_dssp CHHHHHHHHHHST
T ss_pred CHHHHHHHHHhCC
Confidence 9999999998874
No 355
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=87.48 E-value=1.1 Score=45.66 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=53.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+...+|+|+-||.|.+...+.+..-. -.++++|+ +.+++..+.++...+.. ...++.+|+.+-. + ..
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~------~~ 248 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPH-LRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----P------VT 248 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTT-CEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----S------CC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCC-CEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC----C------CC
Confidence 34678999999999999999887432 25889999 88888888776544433 4566777776411 1 24
Q ss_pred eeEEEEcCCC
Q 008350 521 FDLVIGGSPC 530 (569)
Q Consensus 521 ~DlliGGpPC 530 (569)
+|+|+.....
T Consensus 249 ~D~v~~~~vl 258 (374)
T 1qzz_A 249 ADVVLLSFVL 258 (374)
T ss_dssp EEEEEEESCG
T ss_pred CCEEEEeccc
Confidence 7887765543
No 356
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=87.43 E-value=0.69 Score=46.32 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=53.7
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
....+|+|+-||.|.+...+.+..-. ..++++|++ .+++..+.+....+.. ...+..+|+.+... + .+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~------~~ 232 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPN-AEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY---G------ND 232 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTT-CEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC---C------SC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCC-CeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC---C------CC
Confidence 45678999999999999998886211 268999999 8877777665443332 24566777765421 1 24
Q ss_pred eeEEEEcCCCCc
Q 008350 521 FDLVIGGSPCNN 532 (569)
Q Consensus 521 ~DlliGGpPCQ~ 532 (569)
+|+|+....-..
T Consensus 233 ~D~v~~~~~l~~ 244 (335)
T 2r3s_A 233 YDLVLLPNFLHH 244 (335)
T ss_dssp EEEEEEESCGGG
T ss_pred CcEEEEcchhcc
Confidence 788877554433
No 357
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=87.34 E-value=0.31 Score=49.82 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
+.+-.|||.|||.|+..++..++|. ..+++|+++.++...+..+
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr---~~ig~e~~~~~~~~~~~r~ 294 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRF 294 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHH
Confidence 3466799999999999999999994 5799999999998877654
No 358
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=87.03 E-value=0.3 Score=49.63 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=32.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNI 483 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t 483 (569)
.+.++||+=||.|+++..+.+.|. ..|+|+|+++.....
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~ 123 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVW 123 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCH
T ss_pred cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHH
Confidence 457899999999999999988875 479999999876543
No 359
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=86.33 E-value=0.14 Score=51.18 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=47.2
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC------Ccccc--cccccccchhhHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK------GTLID--FADVQQLDANRIE 512 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~------~~~~~--~~DI~~i~~~~l~ 512 (569)
+..+.+||||-||.|+++..+.+.+ .|+++|+++.... .+ ....+ +..++ .+|+.++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~m~~~-a~----~~~~~~~~~~~~v~~~~~~~D~~~l~~---- 138 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASRP----HVMDVRAYTLGVG-GH----EVPRITESYGWNIVKFKSRVDIHTLPV---- 138 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTST----TEEEEEEECCCCS-SC----CCCCCCCBTTGGGEEEECSCCTTTSCC----
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHcC----cEEEEECchhhhh-hh----hhhhhhhccCCCeEEEecccCHhHCCC----
Confidence 3456789999999999999988873 5899999883111 00 00111 34456 778887641
Q ss_pred HHHhccCCeeEEEEcCC
Q 008350 513 QMINAFGGFDLVIGGSP 529 (569)
Q Consensus 513 ~~~~~~g~~DlliGGpP 529 (569)
+.+|+|+....
T Consensus 139 ------~~fD~V~sd~~ 149 (265)
T 2oxt_A 139 ------ERTDVIMCDVG 149 (265)
T ss_dssp ------CCCSEEEECCC
T ss_pred ------CCCcEEEEeCc
Confidence 46899987654
No 360
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=86.24 E-value=0.85 Score=35.80 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhc---CCCCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERC---GPNTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~---G~~a~~~~l~ 168 (569)
++-+..|+.+||++.||..|+.++ ..+.++++++
T Consensus 18 ~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lI 54 (62)
T 1ixs_A 18 EEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLI 54 (62)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 466899999999999999999998 3456666654
No 361
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=86.20 E-value=0.62 Score=47.11 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=42.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN 492 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N 492 (569)
+..-+|+||=||.|-+++.+....-. ..++++|+++.+++..+.|...++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g 180 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLN 180 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcC
Confidence 55779999999999999999887433 589999999999999999876544
No 362
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=85.92 E-value=0.62 Score=45.51 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=37.8
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~ 489 (569)
.+.+|||+=||.|.+...+...|+ ..|+++|+++.+++.++.|..
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~ 99 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLK 99 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHh
Confidence 467899999999988877777775 579999999999998887653
No 363
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=85.91 E-value=1.1 Score=45.52 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=52.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
...+|+|+-||.|.+...+.+.+-.+ .++++|+ +.+++..+.++...+.. ...++.+|+.+.. + .++
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~------~~~ 250 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL----P------RKA 250 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC----S------SCE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCC-EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC----C------CCc
Confidence 45789999999999999998875443 5788998 77777777766544333 4556777775421 1 237
Q ss_pred eEEEEcCCC
Q 008350 522 DLVIGGSPC 530 (569)
Q Consensus 522 DlliGGpPC 530 (569)
|+++.....
T Consensus 251 D~v~~~~vl 259 (360)
T 1tw3_A 251 DAIILSFVL 259 (360)
T ss_dssp EEEEEESCG
T ss_pred cEEEEcccc
Confidence 777765443
No 364
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=85.82 E-value=0.21 Score=50.16 Aligned_cols=70 Identities=16% Similarity=0.009 Sum_probs=47.3
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC------Ccccc--cccccccchhhHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK------GTLID--FADVQQLDANRIE 512 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~------~~~~~--~~DI~~i~~~~l~ 512 (569)
...+.+||||-||.|+++..+.+.+ .|+++|+++.. ...+. .... +..++ .+|+.++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~m~-~~a~~----~~~~~~~~~~~v~~~~~~~D~~~l~~---- 146 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQP----NVREVKAYTLG-TSGHE----KPRLVETFGWNLITFKSKVDVTKMEP---- 146 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTST----TEEEEEEECCC-CTTSC----CCCCCCCTTGGGEEEECSCCGGGCCC----
T ss_pred CCCCCEEEEeccCCCHHHHHHHHcC----CEEEEECchhh-hhhhh----chhhhhhcCCCeEEEeccCcHhhCCC----
Confidence 3456789999999999999988873 58999998831 11110 0111 34456 778887641
Q ss_pred HHHhccCCeeEEEEcCC
Q 008350 513 QMINAFGGFDLVIGGSP 529 (569)
Q Consensus 513 ~~~~~~g~~DlliGGpP 529 (569)
+.+|+|+....
T Consensus 147 ------~~fD~Vvsd~~ 157 (276)
T 2wa2_A 147 ------FQADTVLCDIG 157 (276)
T ss_dssp ------CCCSEEEECCC
T ss_pred ------CCcCEEEECCC
Confidence 47899998654
No 365
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=85.35 E-value=0.14 Score=52.11 Aligned_cols=75 Identities=16% Similarity=0.025 Sum_probs=47.8
Q ss_pred CCCCcceeccccChhHHHHHHHHcCCceeEEEeecc----CHHHHHHHHHHHhhcCCCCcccccc-cccccchhhHHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDI----SEVNRNIVRSWWEQTNQKGTLIDFA-DVQQLDANRIEQMI 515 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEi----d~~A~~t~~~n~~~~N~~~~~~~~~-DI~~i~~~~l~~~~ 515 (569)
+..+.+||||-||.||++.-+.+.| .|+++|+ .+..+..... ...+.+++.++.+ |+..+..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~D~~~l~~------- 146 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPM--STYGWNLVRLQSGVDVFFIPP------- 146 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCC--CSTTGGGEEEECSCCTTTSCC-------
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHh--hhcCCCCeEEEeccccccCCc-------
Confidence 3456799999999999999998884 4789998 3321110000 0011133456666 7766531
Q ss_pred hccCCeeEEEEcCCCC
Q 008350 516 NAFGGFDLVIGGSPCN 531 (569)
Q Consensus 516 ~~~g~~DlliGGpPCQ 531 (569)
..+|+|+...+|.
T Consensus 147 ---~~fD~V~sd~~~~ 159 (305)
T 2p41_A 147 ---ERCDTLLCDIGES 159 (305)
T ss_dssp ---CCCSEEEECCCCC
T ss_pred ---CCCCEEEECCccc
Confidence 4799999987774
No 366
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=85.06 E-value=1.6 Score=42.39 Aligned_cols=125 Identities=10% Similarity=0.126 Sum_probs=76.6
Q ss_pred cccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHH
Q 008350 3 DHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSI 79 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~ 79 (569)
..+...||+++.|..||. +.|==|...-.+..+..... ..+-+.-.+...|..-|++.+.+..|++++-+++....
T Consensus 83 ~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~-~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~~e~e~ 161 (221)
T 3d5l_A 83 KKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMIN-TDLKGPGIIRQHLRQKGIGESDIDDALTQFTPEVQAEL 161 (221)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHTTCCHHHHHHHGGGCCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-hccccHHHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHH
Confidence 346678999988888875 56777777777777763322 13445667778999999999999999999844332222
Q ss_pred HHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcC
Q 008350 80 LETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERCG 159 (569)
Q Consensus 80 le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G 159 (569)
+..|+.-. ....... + ....+..-...|..=||+-+.+..|+..+.
T Consensus 162 a~~l~~Kk-~~~~~~~-~--------------------------------~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~ 207 (221)
T 3d5l_A 162 AKKLALKL-FRRYRNQ-P--------------------------------ERRREQKVQQGLTTKGFSSSVYEMIKDEVV 207 (221)
T ss_dssp HHHHHHHH-HHHTTTS-C--------------------------------HHHHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHH-HhhccCC-C--------------------------------hHHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 22333211 1111000 0 000123335899999999999999998775
Q ss_pred CCC
Q 008350 160 PNT 162 (569)
Q Consensus 160 ~~a 162 (569)
.+.
T Consensus 208 ~~~ 210 (221)
T 3d5l_A 208 PQP 210 (221)
T ss_dssp ---
T ss_pred chh
Confidence 554
No 367
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=84.74 E-value=0.69 Score=43.58 Aligned_cols=39 Identities=18% Similarity=0.374 Sum_probs=33.5
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
+..+.|..|+.|||+++.|..|+..|+. |.+...++|+.
T Consensus 129 ee~eaI~rL~~mGF~r~~viqA~~ac~k-nee~Aan~L~~ 167 (171)
T 2qsf_X 129 EDDQAISRLCELGFERDLVIQVYFACDK-NEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTT-CHHHHHHHHTT
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHcCC-CHHHHHHHHHh
Confidence 4446799999999999999999999997 56788888874
No 368
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=84.41 E-value=1.4 Score=44.01 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=38.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ 490 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~ 490 (569)
+.+-+|+||=||.|-+++++. .+ ..++++||++.+++..+.+...
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~---~~y~a~DId~~~i~~ar~~~~~ 148 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GI---ASVWGCDIHQGLGDVITPFARE 148 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TC---SEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cC---CeEEEEeCCHHHHHHHHHHHHh
Confidence 456799999999999999988 33 4799999999999999988644
No 369
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=83.70 E-value=1.1 Score=45.29 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCCCcceecccc------ChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccc-ccccccccchhhHHH
Q 008350 441 YPDGINVLSLFS------GIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLI-DFADVQQLDANRIEQ 513 (569)
Q Consensus 441 ~~~~i~vlDLFS------GiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~-~~~DI~~i~~~~l~~ 513 (569)
.+.+.+||||-| |.|+ .+..++.+-. ..|+++|+++. + ++..+ +.+|+.++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~-~~V~gvDis~~----v---------~~v~~~i~gD~~~~~~~---- 121 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTG-TLLVDSDLNDF----V---------SDADSTLIGDCATVHTA---- 121 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTT-CEEEEEESSCC----B---------CSSSEEEESCGGGCCCS----
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCC-CEEEEEECCCC----C---------CCCEEEEECccccCCcc----
Confidence 355778999999 5588 5566665522 26999999987 1 24567 89999876521
Q ss_pred HHhccCCeeEEEEcCCCC
Q 008350 514 MINAFGGFDLVIGGSPCN 531 (569)
Q Consensus 514 ~~~~~g~~DlliGGpPCQ 531 (569)
+.||+|+..+++.
T Consensus 122 -----~~fD~Vvsn~~~~ 134 (290)
T 2xyq_A 122 -----NKWDLIISDMYDP 134 (290)
T ss_dssp -----SCEEEEEECCCCC
T ss_pred -----CcccEEEEcCCcc
Confidence 4799999886543
No 370
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=83.36 E-value=0.79 Score=43.92 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=26.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
.++|+..|+.|||++++|..|+.+++-|.
T Consensus 163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd~ 191 (201)
T 3k9o_A 163 YTKKIENLCAMGFDRNAVIVALSSKSWDV 191 (201)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 37899999999999999999999998863
No 371
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=83.16 E-value=1.6 Score=44.52 Aligned_cols=63 Identities=10% Similarity=0.014 Sum_probs=45.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-ccccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQL 506 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i 506 (569)
+...+|+|+-||.|.+...+.+..-. -.++++|+ +..++..+.++...+.++ ..++.+|+.+.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE 252 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCC-CeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC
Confidence 45678999999999999999887322 25789999 888887777665444433 55666777654
No 372
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=82.97 E-value=0.87 Score=47.20 Aligned_cols=115 Identities=14% Similarity=0.259 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHhcccccCC--CCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHhhhhccCcccccccCCC
Q 008350 25 QNTDLILEALLKHSASSSA--SSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTYSALGQSSQAEQHINSD 102 (569)
Q Consensus 25 ~~~~~ile~ll~~~~~~~~--~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~~~~~~~~~~~~~~ 102 (569)
++...++..|++-+..... +-...+.+..|++|||+++.|.++|..+-.--...+++.+--+..++-+...--...
T Consensus 22 ~~~~~~v~~l~~~~~~~~~~~~~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~e~V~kiL-- 99 (335)
T 4fp9_B 22 ECRRNLVQCLLEKQGTPVVQGSLELERVMSSLLDMGFSNAHINELLSVRRGASLQQLLDIISEFILLGLNPEPVCVVL-- 99 (335)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCCccccccccHHHHHHHHHHCCCCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCHHHHHHHH--
Confidence 4566777777764443221 224567788999999999999999999865443344444433344443221100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhcC
Q 008350 103 QNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERCG 159 (569)
Q Consensus 103 ~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G 159 (569)
--.+ .-+.-+...-..++..|.++||+++++...|.+|-
T Consensus 100 ~k~P------------------~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P 138 (335)
T 4fp9_B 100 KKSP------------------QLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCP 138 (335)
T ss_dssp HHCG------------------GGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCG
T ss_pred HhCh------------------hhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 0000 00000111234667888889999988888888873
No 373
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=82.16 E-value=5.4 Score=37.24 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=78.8
Q ss_pred cccccCCCCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHH
Q 008350 3 DHFVGMGFSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSI 79 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~ 79 (569)
..+...||+++.|..||. +.|==|.....+..+..... ..+-+.-.+...|..-|.+.+.|..|+.+..+++.-..
T Consensus 40 ~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~-~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~ 118 (177)
T 3e3v_A 40 DKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMN-TSDKGPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEK 118 (177)
T ss_dssp TTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH-HCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-cccccHHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHH
Confidence 467788999999999986 56766777777777763221 12345556778999999999999999987754332222
Q ss_pred HHHHHHhhhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHH-HHHHHhCCCCHHHHHHHHHhc
Q 008350 80 LETLLTYSALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEK-LVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 80 le~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k-~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
...|+.-.. ...... + ......| ...|+.=||+-+.+..||..+
T Consensus 119 a~~l~~Kk~-~~~~~~-~---------------------------------~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 119 GVTLAEKLA-NRYSHD-S---------------------------------YRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HHHHHHHHH-HHTTTS-C---------------------------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhccCC-C---------------------------------hHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 222332111 111000 0 0011234 469999999999999999876
Q ss_pred CCC
Q 008350 159 GPN 161 (569)
Q Consensus 159 G~~ 161 (569)
..+
T Consensus 164 ~~~ 166 (177)
T 3e3v_A 164 DLI 166 (177)
T ss_dssp HHC
T ss_pred cCC
Confidence 443
No 374
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=80.55 E-value=1.5 Score=46.11 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=56.8
Q ss_pred cCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccC
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFG 519 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g 519 (569)
.+..+.+++||=|+.||++.-+.+.|. .|+|||+-+-+-.. ...+++.++.+|+.++.... +
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~~l~~~l-------~~~~~V~~~~~d~~~~~~~~--------~ 269 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNM---WVYSVDNGPMAQSL-------MDTGQVTWLREDGFKFRPTR--------S 269 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTC---EEEEECSSCCCHHH-------HTTTCEEEECSCTTTCCCCS--------S
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhhhcChhh-------ccCCCeEEEeCccccccCCC--------C
Confidence 345689999999999999999998886 58999976533211 13567778888888776432 5
Q ss_pred CeeEEEEcCCCCc
Q 008350 520 GFDLVIGGSPCNN 532 (569)
Q Consensus 520 ~~DlliGGpPCQ~ 532 (569)
++|+|+..--|++
T Consensus 270 ~~D~vvsDm~~~p 282 (375)
T 4auk_A 270 NISWMVCDMVEKP 282 (375)
T ss_dssp CEEEEEECCSSCH
T ss_pred CcCEEEEcCCCCh
Confidence 7999999987765
No 375
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=80.08 E-value=1.4 Score=45.83 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=36.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~ 486 (569)
+.+.+|||+=||.|.+...+.+.|. .|+++|+++...+..+.
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~ 147 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKARE 147 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHT
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHH
Confidence 3567899999999999999999986 58999999998877664
No 376
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=79.99 E-value=0.59 Score=45.42 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=34.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRS 486 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~ 486 (569)
.+.+|||+-||.|+++..+.+.|. ..|+++|+++.+.+..+.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~ 78 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIR 78 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHH
T ss_pred CCCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHH
Confidence 456899999999999999999885 379999999887655443
No 377
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=79.66 E-value=3.8 Score=42.67 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=47.1
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLD 507 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~ 507 (569)
+.+|+++..|.|+++..|...+- .+.|+++|+|+..+..++... ..++..++.+|+-+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYDWS 118 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTCHH
T ss_pred CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccchh
Confidence 57899999999999999997521 146999999999888887653 2345678899996654
No 378
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=79.54 E-value=6.3 Score=40.35 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=14.7
Q ss_pred HhCCCCHHHHHHHHHhc
Q 008350 142 ASMGYSVQEASIAMERC 158 (569)
Q Consensus 142 ~~Mgf~e~e~~~Ai~r~ 158 (569)
..+||+++|+..++.||
T Consensus 248 ~~lG~s~~ev~~~v~~~ 264 (343)
T 3mva_O 248 FSLGCTEEEVQKFVLSY 264 (343)
T ss_dssp HTTTCCHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHhC
Confidence 37999999999988877
No 379
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=78.68 E-value=1.5 Score=44.84 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCH---HHHHHHHHHH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISE---VNRNIVRSWW 488 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~---~A~~t~~~n~ 488 (569)
+.+-.|||.|||.|+..++..++|. ..+++|+++ ..++..+..+
T Consensus 241 ~~~~~vlDpF~GsGtt~~aa~~~~r---~~ig~e~~~~~~~~~~~~~~Rl 287 (319)
T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQLTFL 287 (319)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHHHHC
T ss_pred CCCCEEEecCCCCCHHHHHHHHcCC---cEEEEECCccHHHHHHHHHHHH
Confidence 3466799999999999999999994 579999999 7777666554
No 380
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=78.18 E-value=1.3 Score=50.28 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=54.0
Q ss_pred CcceeccccChhHHHHH----HHHcC--------CceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhh
Q 008350 444 GINVLSLFSGIGGAEVA----LHRLG--------VRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANR 510 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slG----l~~aG--------i~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~ 510 (569)
...|+|+=||.|-++.. .+.+| ..-..|+|||.++.|..+++.... ++..+ +.++.+|++++....
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 45799999999999752 22233 112479999999998877665432 33433 668899999886310
Q ss_pred HHHHHhccCCeeEEEEcCC
Q 008350 511 IEQMINAFGGFDLVIGGSP 529 (569)
Q Consensus 511 l~~~~~~~g~~DlliGGpP 529 (569)
. .....++|+||.-.-
T Consensus 489 -~--~~~~ekVDIIVSElm 504 (745)
T 3ua3_A 489 -K--DRGFEQPDIIVSELL 504 (745)
T ss_dssp -H--HTTCCCCSEEEECCC
T ss_pred -c--cCCCCcccEEEEecc
Confidence 0 011357999986543
No 381
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=78.09 E-value=0.57 Score=45.36 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred CcceeccccChhHHHHHHHHc----CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch-hhHHHHHhcc
Q 008350 444 GINVLSLFSGIGGAEVALHRL----GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA-NRIEQMINAF 518 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a----Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~-~~l~~~~~~~ 518 (569)
+.+|||+-||.|+.+..+.+. +-. ..|+++|+++.+++..+. . .++..++.+|+.++.. ..+. .
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~-~~V~gvD~s~~~l~~a~~----~-~~~v~~~~gD~~~~~~l~~~~-----~ 150 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGID-CQVIGIDRDLSRCQIPAS----D-MENITLHQGDCSDLTTFEHLR-----E 150 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCC-CEEEEEESCCTTCCCCGG----G-CTTEEEEECCSSCSGGGGGGS-----S
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCC-CEEEEEeCChHHHHHHhc----c-CCceEEEECcchhHHHHHhhc-----c
Confidence 468999999999999998875 211 369999999987654431 1 2456788899987521 1111 1
Q ss_pred CCeeEEEEcC
Q 008350 519 GGFDLVIGGS 528 (569)
Q Consensus 519 g~~DlliGGp 528 (569)
..+|+|+.+.
T Consensus 151 ~~fD~I~~d~ 160 (236)
T 2bm8_A 151 MAHPLIFIDN 160 (236)
T ss_dssp SCSSEEEEES
T ss_pred CCCCEEEECC
Confidence 2589988644
No 382
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=76.93 E-value=3.6 Score=46.22 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred CcceeccccChhHHHHHHHH----cCCceeEEEeeccCHHHHHHHHHHHhhcCCCC-cccccccccccchhhHHHHHhcc
Q 008350 444 GINVLSLFSGIGGAEVALHR----LGVRMKNVVSVDISEVNRNIVRSWWEQTNQKG-TLIDFADVQQLDANRIEQMINAF 518 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~----aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~-~~~~~~DI~~i~~~~l~~~~~~~ 518 (569)
...|+|+=||.|-++....+ ++.++ .|+|||.++.|..+.+.- ..++..+ +.++.+|++++...
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~v-kVyAVEknp~A~~a~~~v-~~N~~~dkVtVI~gd~eev~LP--------- 426 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRI-KLYAVEKNPNAVVTLENW-QFEEWGSQVTVVSSDMREWVAP--------- 426 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEE-EEEEEESCHHHHHHHHHH-HHHTTGGGEEEEESCTTTCCCS---------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCc-EEEEEECCHHHHHHHHHH-HhccCCCeEEEEeCcceeccCC---------
Confidence 45799999999988553333 34432 589999999887665532 2333332 45889999998632
Q ss_pred CCeeEEEE
Q 008350 519 GGFDLVIG 526 (569)
Q Consensus 519 g~~DlliG 526 (569)
.++||||-
T Consensus 427 EKVDIIVS 434 (637)
T 4gqb_A 427 EKADIIVS 434 (637)
T ss_dssp SCEEEEEC
T ss_pred cccCEEEE
Confidence 36788863
No 383
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=76.75 E-value=1.7 Score=40.98 Aligned_cols=35 Identities=14% Similarity=0.359 Sum_probs=30.7
Q ss_pred CCCCCchHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 128 TNPDPDKEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 128 ~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
.....+.++++..|+.|||+++.|-.|...|+.+.
T Consensus 124 i~~tpee~eaI~rL~~mGF~r~~viqA~~ac~kne 158 (171)
T 2qsf_X 124 VDYTPEDDQAISRLCELGFERDLVIQVYFACDKNE 158 (171)
T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCH
T ss_pred CCCCccHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 34566777899999999999999999999999985
No 384
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=74.19 E-value=0.88 Score=44.31 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=0.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
+.+++.|+.|||+++.|..|+..+|-+. +..+|.||.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~-~~~~~~l~~ 214 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNE-TLALNTLLE 214 (216)
T ss_dssp --------------------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCch-HHHHHHHhc
Confidence 6789999999999999999999999854 778888875
No 385
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=73.82 E-value=4.1 Score=41.09 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=52.0
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCC-CcccccccccccchhhHHHHHhccCCee
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQK-GTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~-~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
..+|+|+=||.|.+...+.+..-. -.++++|+ +..+...+.+....+.. ...+..+|+.+.... +. +++|
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~------~~~D 250 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQ-LTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-EG------GAAD 250 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-TT------CCEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCC-CeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-CC------CCcc
Confidence 678999999999999999887433 25788999 66666666655433322 245667777665310 11 3588
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+|+...-..
T Consensus 251 ~v~~~~vlh 259 (352)
T 3mcz_A 251 VVMLNDCLH 259 (352)
T ss_dssp EEEEESCGG
T ss_pred EEEEecccc
Confidence 888755433
No 386
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=73.09 E-value=2 Score=45.86 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=49.9
Q ss_pred CCCCcceeccccC------hhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh-hHHH
Q 008350 441 YPDGINVLSLFSG------IGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN-RIEQ 513 (569)
Q Consensus 441 ~~~~i~vlDLFSG------iGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~-~l~~ 513 (569)
..++.+|||+=|| .||.++.+.+.-++-..|+++|+++... .+.++..++++|+.++... .+.
T Consensus 214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~- 283 (419)
T 3sso_A 214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIA- 283 (419)
T ss_dssp TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHH-
T ss_pred cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhh-
Confidence 3457899999999 6888877665311113689999999852 1234677889999887532 111
Q ss_pred HHhccCCeeEEEEc
Q 008350 514 MINAFGGFDLVIGG 527 (569)
Q Consensus 514 ~~~~~g~~DlliGG 527 (569)
...+.||+|+..
T Consensus 284 --~~d~sFDlVisd 295 (419)
T 3sso_A 284 --RRYGPFDIVIDD 295 (419)
T ss_dssp --HHHCCEEEEEEC
T ss_pred --cccCCccEEEEC
Confidence 112689999853
No 387
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=72.92 E-value=6.2 Score=30.80 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=23.4
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~ 71 (569)
..++.+..|+.+||++.++.+|+++.
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34678999999999999999999998
No 388
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=72.03 E-value=2.2 Score=41.40 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.6
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
..+|+..|+.|||+++.|-.|+.+||-|.
T Consensus 169 ~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 169 DHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 35789999999999999999999999985
No 389
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.70 E-value=21 Score=32.54 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCHHHHHHHHH---HhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 10 FSEEVVAKAIQ---ENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 10 f~~~~v~k~i~---e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
|+++.|..||. +.|==|...-.+..+..... .+-+.-.+...|..-|.+.+.|..||+++..+-.+.+.+ |+.-
T Consensus 44 ~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~--~g~G~~~I~~eL~~KGI~~~~i~~al~~~~~d~~~~a~~-l~~k 120 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYLDDSRFVARFIASRSR--KGYGPARIRQELNQKGISREATEKAMREADIDWAALARD-QATR 120 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTTCCHHHHHHHHHHHCCCHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh--CCccHHHHHHHHHHcCCCHHHHHHHHHHcCHhHHHHHHH-HHHH
Confidence 89998888876 45655777777777764432 345566777899999999999999999997632333333 3321
Q ss_pred hhhccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCchHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 87 SALGQSSQAEQHINSDQNSPELDGSFLDGFSDTDSFEGEEITNPDPDKEEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~~~~s~~~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
. .+.. . . ....++..-+..|+.=||+-+.+..+|..+
T Consensus 121 k-~~~~--~---~-----------------------------~~~~~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 121 K-YGEP--L---P-----------------------------TVFSEKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp H-HCSS--C---C-----------------------------CSHHHHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred H-cCCC--C---C-----------------------------CCHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 1 1110 0 0 000123344689999999999998776543
No 390
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=71.65 E-value=5.1 Score=40.70 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=61.0
Q ss_pred CCCCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhh-----cCCCCcccccccccccchhhHHHH
Q 008350 441 YPDGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQ-----TNQKGTLIDFADVQQLDANRIEQM 514 (569)
Q Consensus 441 ~~~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~-----~N~~~~~~~~~DI~~i~~~~l~~~ 514 (569)
.|++-+||=+=.|.||...-+.+. ++ +.|..||||+..++..+.++.. .+.|...++.+|..++..+.
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v--~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~---- 154 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNV--ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT---- 154 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS----
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCc--ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc----
Confidence 466778888878888877666654 43 6799999999999999888753 23566778899998876432
Q ss_pred HhccCCeeEEEEcCCC
Q 008350 515 INAFGGFDLVIGGSPC 530 (569)
Q Consensus 515 ~~~~g~~DlliGGpPC 530 (569)
...+|+||...+-
T Consensus 155 ---~~~yDvIi~D~~d 167 (294)
T 3o4f_A 155 ---SQTFDVIISDCTD 167 (294)
T ss_dssp ---SCCEEEEEESCCC
T ss_pred ---cccCCEEEEeCCC
Confidence 2579999999864
No 391
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=71.00 E-value=1.9 Score=40.08 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=41.5
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
+.+.+|||+-||.|.+...+ + ..+.++|+++. +..+..+|+.++... .+.+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~---~~v~~~D~s~~---------------~~~~~~~d~~~~~~~--------~~~f 116 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---R---NPVHCFDLASL---------------DPRVTVCDMAQVPLE--------DESV 116 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---C---SCEEEEESSCS---------------STTEEESCTTSCSCC--------TTCE
T ss_pred CCCCeEEEECCcCCHHHHHh---h---ccEEEEeCCCC---------------CceEEEeccccCCCC--------CCCE
Confidence 45678999999999988766 3 25899999876 133567787775421 1469
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+...
T Consensus 117 D~v~~~~ 123 (215)
T 2zfu_A 117 DVAVFCL 123 (215)
T ss_dssp EEEEEES
T ss_pred eEEEEeh
Confidence 9998754
No 392
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=68.98 E-value=3.4 Score=41.16 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=27.0
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 133 DKEEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 133 ~~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
+-++|+..|+.|||+++.|-.|+.+||=|.
T Consensus 214 ~~~~~v~~l~~mgf~~~~~~~al~~~nWd~ 243 (253)
T 3e46_A 214 EYTKKIENLCAAGFDRNAVIVALSSKSWDV 243 (253)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 447899999999999999999999998863
No 393
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.81 E-value=3.9 Score=32.60 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=31.2
Q ss_pred cccccCCCC---HHHHHHHHHHhCCCCHHHHHHHHHhcccccCC
Q 008350 3 DHFVGMGFS---EEVVAKAIQENGEQNTDLILEALLKHSASSSA 43 (569)
Q Consensus 3 ~~~~~MGf~---~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~ 43 (569)
.+|..| || .+.|.++++.+|. |.+.-++.||..+..+..
T Consensus 23 ~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 23 DDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLESGP 64 (67)
T ss_dssp HHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHCSSC
T ss_pred HHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCC
Confidence 456666 64 7899999999977 999999999997765443
No 394
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=66.77 E-value=9.8 Score=38.84 Aligned_cols=62 Identities=11% Similarity=0.027 Sum_probs=43.9
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQL 506 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i 506 (569)
..-+|+|+=||.|.+...+.+..-.. .++++|+ +..++..+.+....+. ....+..+|+.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 241 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR 241 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC-EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC-EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc
Confidence 45689999999999999998853332 5899999 8877777776543322 1345667777653
No 395
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=66.59 E-value=11 Score=36.05 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=41.6
Q ss_pred CcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCC---CCccccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQ---KGTLIDFADVQQL 506 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~---~~~~~~~~DI~~i 506 (569)
.-+||++=|| .-++-+.++ + ..|+++|.++.-.+..+.|+...+. ..+.++.+|+.+.
T Consensus 31 a~~VLEiGtG--ySTl~lA~~~~---g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~ 92 (202)
T 3cvo_A 31 AEVILEYGSG--GSTVVAAELPG---KHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT 92 (202)
T ss_dssp CSEEEEESCS--HHHHHHHTSTT---CEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred CCEEEEECch--HHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence 4578888665 455555554 3 3799999999999888999887653 2355778887654
No 396
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.54 E-value=9.8 Score=30.28 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHhCCCC---HHHHHHHHHHhCCCchhHHHHHHHHhhhh
Q 008350 44 SSSKSKLIDHFVGMGFS---VDMVAKAIQENGEENTDSILETLLTYSAL 89 (569)
Q Consensus 44 ~ss~~~~~~~~~~MGF~---~~~v~~Ai~~~G~~~~d~~le~Ll~~~~~ 89 (569)
..+....+++|..| || .+.|..+++.||. ++|+.++.||..+.-
T Consensus 15 ~~~~~~~v~~L~~M-FP~lD~~vI~~vL~a~~G-~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 15 RLEFNQAMDDFKTM-FPNMDYDIIECVLRANSG-AVDATIDQLLQMNLE 61 (67)
T ss_dssp CCCSHHHHHHHHHH-CSSSCHHHHHHHHHHHTS-CHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHhcCCC
Confidence 45677789999999 86 6889999999996 679999999986543
No 397
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=66.18 E-value=3.4 Score=38.04 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=45.2
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCHHHHHHHHH-h-cccccCCC--CChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 3 DHFVGMGFSEEVVAKAIQENGEQNTDLILEALL-K-HSASSSAS--SSKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 3 ~~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll-~-~~~~~~~~--ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
..|..-|++.+.|..|+++..+ |....+..|+ + |.. ..+. -...+++..|+.=||+.+.|..||++..+
T Consensus 89 ~eL~~KGI~~~~I~~al~~~~~-de~e~a~~l~~Kk~~~-~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l~~~~~ 161 (162)
T 3dfg_A 89 AELGTHGLDSDAVSAAMATFEG-DWTENALDLIRRRFGE-DGPVDLAQRRKAADLLARRGFDGNSIRLATRFDLE 161 (162)
T ss_dssp HHHHHTTCCHHHHHHHHTTCCS-CHHHHHHHHHHHHHCT-TCCCSHHHHHHHHHHHHHTTCCHHHHHHHTTC---
T ss_pred HHHHHcCCCHHHHHHHHHhCcH-hHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHhcCcC
Confidence 3566779999999999999854 4433333333 2 222 1111 23456788999999999999999986554
No 398
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=65.28 E-value=12 Score=38.33 Aligned_cols=80 Identities=10% Similarity=-0.025 Sum_probs=53.6
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCC
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGG 520 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~ 520 (569)
+...+|+|+=||.|.+...+.+..-.. .++++|+ +..++..+.++...+. ....+..+|+.+-. + ..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----p------~~ 268 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI----P------DG 268 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC----C------SS
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCC-eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC----C------CC
Confidence 456889999999999999998874332 5789999 8888777776554332 23556677775211 1 15
Q ss_pred eeEEEEcCCCCcc
Q 008350 521 FDLVIGGSPCNNL 533 (569)
Q Consensus 521 ~DlliGGpPCQ~f 533 (569)
+|+|+...-...+
T Consensus 269 ~D~v~~~~vlh~~ 281 (369)
T 3gwz_A 269 ADVYLIKHVLHDW 281 (369)
T ss_dssp CSEEEEESCGGGS
T ss_pred ceEEEhhhhhccC
Confidence 7777765544333
No 399
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=64.52 E-value=4.1 Score=40.76 Aligned_cols=74 Identities=14% Similarity=0.002 Sum_probs=48.1
Q ss_pred cceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCcccccccccccchhhHHHHHhccCCeeE
Q 008350 445 INVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQQLDANRIEQMINAFGGFDL 523 (569)
Q Consensus 445 i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dl 523 (569)
.+|+|+-||.|.+...+.+..-. ..++++|+ +..++..+.++...+. ....+..+|+.+-. + +.+|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~------~~~D~ 236 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPS-ARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEV----P------SNGDI 236 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTT-CEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCC----C------SSCSE
T ss_pred CEEEEeCCCchHHHHHHHHHCCC-CEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCC----C------CCCCE
Confidence 78999999999999999876322 25799999 8777766665432221 23456666665411 1 25677
Q ss_pred EEEcCCC
Q 008350 524 VIGGSPC 530 (569)
Q Consensus 524 liGGpPC 530 (569)
|+.....
T Consensus 237 v~~~~vl 243 (334)
T 2ip2_A 237 YLLSRII 243 (334)
T ss_dssp EEEESCG
T ss_pred EEEchhc
Confidence 7755443
No 400
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=61.88 E-value=14 Score=35.81 Aligned_cols=72 Identities=29% Similarity=0.310 Sum_probs=44.9
Q ss_pred Chh-HHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 453 GIG-GAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 453 GiG-G~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
||| .....|.+.|.+ |+.++.++...+....-....+.+....+..|+++... +-+.+..+++|++|+++-.
T Consensus 19 GIG~aiA~~la~~Ga~---Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 19 SIAFGVAKVLDQLGAK---LVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp CHHHHHHHHHHHTTCE---EEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred hHHHHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence 555 356678889974 66777776655444433333444456677889887642 1233344567999999854
No 401
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=61.46 E-value=6.5 Score=37.77 Aligned_cols=34 Identities=32% Similarity=0.507 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhc-CCCCchhHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERC-GPNTSIAELT 168 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~-G~~a~~~~l~ 168 (569)
++-+..|+.+||++.||..|+.++ .++.++++++
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~e~li 195 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKIARPDASSETLI 195 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHSCCSSCCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 567899999999999999999998 5566676654
No 402
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=61.00 E-value=24 Score=37.14 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=53.9
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-----C---CCcccccccccccchhhHHHHH
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-----Q---KGTLIDFADVQQLDANRIEQMI 515 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-----~---~~~~~~~~DI~~i~~~~l~~~~ 515 (569)
+-+||=+=.|.||...-+.+... +.|..||||+..++..+.|+...+ . +...++.+|..++..+...
T Consensus 206 pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~--- 280 (381)
T 3c6k_A 206 GKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK--- 280 (381)
T ss_dssp TCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---
T ss_pred CCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh---
Confidence 45687777787887766666554 679999999999999998864321 1 1234566777665532211
Q ss_pred hccCCeeEEEEcCCC
Q 008350 516 NAFGGFDLVIGGSPC 530 (569)
Q Consensus 516 ~~~g~~DlliGGpPC 530 (569)
....+|+||...+-
T Consensus 281 -~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 281 -EGREFDYVINDLTA 294 (381)
T ss_dssp -HTCCEEEEEEECCS
T ss_pred -ccCceeEEEECCCC
Confidence 23579999998653
No 403
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=60.68 E-value=3.8 Score=38.31 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=45.0
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhccc-ccCCCC---ChhHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 008350 4 HFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSA-SSSASS---SKSKLIDHFVGMGFSVDMVAKAIQENGEE 74 (569)
Q Consensus 4 ~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~-~~~~~s---s~~~~~~~~~~MGF~~~~v~~Ai~~~G~~ 74 (569)
.|..-|.+.+.|..|+++..+++.-..+..|+.=.- .....+ ...+++..|+.=||+.+.|..||+++..+
T Consensus 92 eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~ 166 (177)
T 3e3v_A 92 NLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166 (177)
T ss_dssp HHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcCC
Confidence 456678999999999987643333233333332110 111111 24467789999999999999999987543
No 404
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=58.88 E-value=8.7 Score=35.09 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=43.0
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHh--cccccCCCC--ChhHHHHHHHhCCCCHHHHHHHHHHh
Q 008350 4 HFVGMGFSEEVVAKAIQENGEQNTDLILEALLK--HSASSSASS--SKSKLIDHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 4 ~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~--~~~~~~~~s--s~~~~~~~~~~MGF~~~~v~~Ai~~~ 71 (569)
.|..-|.+.+.|..|+++.-+ |....+..|+. +.. ..+.. ...+++..|..=||+.+.|..+|+++
T Consensus 88 eL~~KGI~~~~i~~al~~~~~-d~~~~a~~l~~kk~~~-~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 88 ELNQKGISREATEKAMREADI-DWAALARDQATRKYGE-PLPTVFSEKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp HHHHTTCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHCS-SCCCSHHHHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred HHHHcCCCHHHHHHHHHHcCH-hHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 456679999999999999855 44333333332 211 11111 34578889999999999999888765
No 405
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=58.82 E-value=9.1 Score=35.29 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=32.2
Q ss_pred CCCCcceeccccChh-HHHHHHHH-cCCceeEEEeeccCHHHHH
Q 008350 441 YPDGINVLSLFSGIG-GAEVALHR-LGVRMKNVVSVDISEVNRN 482 (569)
Q Consensus 441 ~~~~i~vlDLFSGiG-G~slGl~~-aGi~~k~V~avEid~~A~~ 482 (569)
+..+.+++++=||-| -.+.-|.+ .|++ |.++|+++.|+.
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~g~~---V~atDInp~Av~ 73 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHSKVD---LVLTDIKPSHGG 73 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHSCCE---EEEECSSCSSTT
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhCCCe---EEEEECCccccc
Confidence 344679999999999 58888886 9974 899999998764
No 406
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=56.36 E-value=16 Score=35.78 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=43.7
Q ss_pred cChh-HHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 452 SGIG-GAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 452 SGiG-G~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+|+| .....|.+.|. .|+.++.++...+.... ..++...+..|+++... +-+.+..+++|++|+||-.
T Consensus 12 ~GIG~aia~~la~~Ga---~V~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVNN 82 (247)
T 3ged_A 12 HGIGKQICLDFLEAGD---KVCFIDIDEKRSADFAK-----ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp SHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHT-----TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CHHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHH-----hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3444 24557778897 47788998876654442 23456677889987642 1233344568999999863
No 407
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=55.79 E-value=18 Score=35.98 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=42.2
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCC-CCccccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQ-KGTLIDFADVQ 504 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~-~~~~~~~~DI~ 504 (569)
..+|+|+=||.|.+...+.+..-.. .++++|+ +..+...+.++...+. ....+..+|+.
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCC-eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 4689999999999999998754332 5788899 8888777766544332 23456666664
No 408
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=55.39 E-value=21 Score=36.44 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 135 EEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
..++..|..+|.+.+++...+.++
T Consensus 124 ~p~v~fL~~lGl~~~~i~~ll~~~ 147 (343)
T 3mva_O 124 ENNIKFLYSVGLTRKCLCRLLTNA 147 (343)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456889999999999999888776
No 409
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=54.69 E-value=11 Score=36.40 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhc---CCCCchhHHHH
Q 008350 135 EEKLVSLASMGYSVQEASIAMERC---GPNTSIAELTD 169 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~---G~~a~~~~l~D 169 (569)
++-+..|+.+||++.||..|+.++ .++.++++|+-
T Consensus 165 ~ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~lir 202 (212)
T 2ztd_A 165 SPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALR 202 (212)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 467899999999999999999998 34666766643
No 410
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=54.65 E-value=14 Score=29.77 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=27.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhcCCCCc
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERCGPNTS 163 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a~ 163 (569)
-+.|+..|..-|-+++|+..|+.|.|..++
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHccCCCC
Confidence 458999999999999999999999998654
No 411
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=53.94 E-value=13 Score=36.60 Aligned_cols=84 Identities=20% Similarity=0.157 Sum_probs=53.8
Q ss_pred CcceeccccCh---hHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchh----hHHHHHh
Q 008350 444 GINVLSLFSGI---GGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDAN----RIEQMIN 516 (569)
Q Consensus 444 ~i~vlDLFSGi---GG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~----~l~~~~~ 516 (569)
.-+||||=||. |.+...+.+..-. ..|+++|+++..++..+..... .+.+.++.+|+.+...- .+...+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~-~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~~~~~~~~~~~~~~- 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPD-ARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDPEYILNHPDVRRMI- 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCHHHHHHSHHHHHHC-
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCC-CEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCchhhhccchhhccC-
Confidence 36899999999 9887666654211 2689999999998887766432 24567888999875311 000111
Q ss_pred ccCCeeEEEEcCCCC
Q 008350 517 AFGGFDLVIGGSPCN 531 (569)
Q Consensus 517 ~~g~~DlliGGpPCQ 531 (569)
.+..+|+|+...-.+
T Consensus 154 d~~~~d~v~~~~vlh 168 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLH 168 (274)
T ss_dssp CTTSCCEEEETTTGG
T ss_pred CCCCCEEEEEechhh
Confidence 124678887665333
No 412
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=53.30 E-value=33 Score=35.60 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=54.8
Q ss_pred CCcceeccccChhHHHHHHHHc-CCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 443 DGINVLSLFSGIGGAEVALHRL-GVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~a-Gi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
.+-+++|.-+|.||-+.++.+. |-. -.|+++|.++.|.+..+ .. ......++.++-.++. +.+... +-.+.+
T Consensus 57 pggiyVD~TlG~GGHS~~iL~~lg~~-GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~-~~L~~~-g~~~~v 129 (347)
T 3tka_A 57 PDGIYIDGTFGRGGHSRLILSQLGEE-GRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALG-EYVAER-DLIGKI 129 (347)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTCCTT-CEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHH-HHHHHT-TCTTCE
T ss_pred CCCEEEEeCcCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHH-HHHHhc-CCCCcc
Confidence 3567999999999999998765 422 36999999999988654 21 1122345556655553 222211 001369
Q ss_pred eEEEEcCCCCc
Q 008350 522 DLVIGGSPCNN 532 (569)
Q Consensus 522 DlliGGpPCQ~ 532 (569)
|.|+....|..
T Consensus 130 DgILfDLGVSS 140 (347)
T 3tka_A 130 DGILLDLGVSS 140 (347)
T ss_dssp EEEEEECSCCH
T ss_pred cEEEECCccCH
Confidence 99999998875
No 413
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=53.14 E-value=30 Score=33.70 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=32.2
Q ss_pred CCcceeccccChhHHHHHHH----HcCCcee-EEEeeccCHHHHHHHHHHHh
Q 008350 443 DGINVLSLFSGIGGAEVALH----RLGVRMK-NVVSVDISEVNRNIVRSWWE 489 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~----~aGi~~k-~V~avEid~~A~~t~~~n~~ 489 (569)
.+.+|||+=||.|.++..+. ..+-.+. .+.++|.++..++.++....
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~ 103 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVA 103 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHH
Confidence 46789999999998765322 2111122 24999999999888776543
No 414
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=52.90 E-value=5.8 Score=38.38 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=43.4
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCC----ChhHHHHHHHhCCCCHHHHHHHHHHhCC
Q 008350 4 HFVGMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASS----SKSKLIDHFVGMGFSVDMVAKAIQENGE 73 (569)
Q Consensus 4 ~~~~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~s----s~~~~~~~~~~MGF~~~~v~~Ai~~~G~ 73 (569)
.|..-|++.+.|..|+++.-+++....+..|+.=.-...... ...+++..|..=||+.+.|..|++++..
T Consensus 135 eL~~KGI~~~~I~~al~~~~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~~~ 208 (221)
T 3d5l_A 135 HLRQKGIGESDIDDALTQFTPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKDEVVP 208 (221)
T ss_dssp HHHHTTCCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTTC---
T ss_pred HHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHHhccc
Confidence 456679999999999988733232233333332111111111 2567788999999999999999987744
No 415
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=52.16 E-value=18 Score=27.99 Aligned_cols=41 Identities=15% Similarity=0.348 Sum_probs=32.9
Q ss_pred ChhHHHHHHHhCCCC---HHHHHHHHHHhCCCchhHHHHHHHHhhh
Q 008350 46 SKSKLIDHFVGMGFS---VDMVAKAIQENGEENTDSILETLLTYSA 88 (569)
Q Consensus 46 s~~~~~~~~~~MGF~---~~~v~~Ai~~~G~~~~d~~le~Ll~~~~ 88 (569)
.....+.+|..| || .+.|..+++.|+. |.|+.++.||..+.
T Consensus 8 ~~ee~l~~L~em-FP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 8 CSEEDLKAIQDM-FPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGE 51 (59)
T ss_dssp SCHHHHHHHHHH-CSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHH-CCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcC
Confidence 455678899998 75 7888889999986 77999999997543
No 416
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=50.31 E-value=9.8 Score=32.70 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=29.1
Q ss_pred ccccccCCCCHHHHHHHHHH----hCC--CCHHHHHHHHHhccc
Q 008350 2 IDHFVGMGFSEEVVAKAIQE----NGE--QNTDLILEALLKHSA 39 (569)
Q Consensus 2 ~~~~~~MGf~~~~v~k~i~e----~g~--~~~~~ile~ll~~~~ 39 (569)
+...+.|||....|.++++. +|. ...+.||+.||.-+.
T Consensus 31 V~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 31 VQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 45677999999999999887 454 347888888886543
No 417
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=48.39 E-value=25 Score=30.06 Aligned_cols=40 Identities=20% Similarity=0.463 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH----hCCC--chhHHHHHHHHhhh
Q 008350 49 KLIDHFVGMGFSVDMVAKAIQE----NGEE--NTDSILETLLTYSA 88 (569)
Q Consensus 49 ~~~~~~~~MGF~~~~v~~Ai~~----~G~~--~~d~~le~Ll~~~~ 88 (569)
.++...+.|||....|..++++ .|.. -++.+|..|+....
T Consensus 29 ~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 29 PMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp THHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 3577889999999999999988 3543 37888888886544
No 418
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=47.82 E-value=15 Score=36.83 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=31.7
Q ss_pred hccCCC-CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHH
Q 008350 438 KEMYPD-GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVR 485 (569)
Q Consensus 438 k~~~~~-~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~ 485 (569)
.+.+|. .-+.+|.|+|.|+..+.+.. +.++.+|+++.-+..|+
T Consensus 29 ~~~lp~~~~~yvEpF~GggaV~~~~~~-----~~~i~ND~n~~Lin~y~ 72 (284)
T 2dpm_A 29 RELIPKTYNRYFEPFVGGGALFFDLAP-----KDAVINDFNAELINCYQ 72 (284)
T ss_dssp HHHSCSSCSCEEETTCTTCHHHHHHCC-----SEEEEEESCHHHHHHHH
T ss_pred HHHhccccCEEEeecCCccHHHHhhhc-----cceeeeecchHHHHHHH
Confidence 344454 45799999999998776632 46899999998766653
No 419
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=46.90 E-value=40 Score=32.85 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=12.2
Q ss_pred HHHHHHHH-hCCCCHHHHH
Q 008350 135 EEKLVSLA-SMGYSVQEAS 152 (569)
Q Consensus 135 ~~k~~~L~-~Mgf~e~e~~ 152 (569)
..|+..|+ .||++.+++.
T Consensus 184 ~~k~~fL~~~mg~~~~~i~ 202 (270)
T 3m66_A 184 TETFDFVHNVMSIPHHIIV 202 (270)
T ss_dssp HHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHH
Confidence 35667775 4888887754
No 420
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=46.36 E-value=8.1 Score=37.69 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWW 488 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~ 488 (569)
.+.+|||+=||.|.+..-+.+.+. ..|+++|+++.+++.++.+.
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~ 114 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWL 114 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHH
Confidence 467899999999995543333222 36999999999998877654
No 421
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=45.78 E-value=35 Score=33.49 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=41.6
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEE
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliG 526 (569)
....|.+.|. .|+.++.++...+....-.... ......+..|+++... .-+.+..+++|++|++|-
T Consensus 23 iA~~la~~Ga---~Vv~~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVN 90 (254)
T 4fn4_A 23 IAKKFALNDS---IVVAVELLEDRLNQIVQELRGM-GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCN 90 (254)
T ss_dssp HHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4456777896 4777899887665444333222 2345677889987653 113334456899999985
No 422
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=44.02 E-value=20 Score=27.40 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.7
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHhc
Q 008350 134 KEEKLVSLASMGYSVQEASIAMERC 158 (569)
Q Consensus 134 ~~~k~~~L~~Mgf~e~e~~~Ai~r~ 158 (569)
-..|+..|..-|-+++|+..|+.|+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3589999999999999999999985
No 423
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=43.89 E-value=13 Score=36.99 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=31.2
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHH
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVR 485 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~ 485 (569)
.+.+|..-+.+|.|+|.|+..+.+. . +.++.+|+++.-+..|+
T Consensus 22 ~~~~p~~~~yvEpF~Ggg~V~~~~~--~---~~~i~ND~n~~lin~y~ 64 (278)
T 2g1p_A 22 KRHLPKGECLVEPFVGAGSVFLNTD--F---SRYILADINSDLISLYN 64 (278)
T ss_dssp HHHCCCCSEEEETTCTTCHHHHTCC--C---SEEEEEESCHHHHHHHH
T ss_pred HHhccccCeEEeeccCccHHHHhhc--c---cceEEEeccHHHHHHHH
Confidence 3445556689999999998866543 2 46899999998765444
No 424
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=42.12 E-value=26 Score=27.00 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=32.4
Q ss_pred cccccC--CCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCC
Q 008350 3 DHFVGM--GFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSS 46 (569)
Q Consensus 3 ~~~~~M--Gf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss 46 (569)
++|.+| .++.+.|.++++.++. |.|.-.+.||..+..+..++|
T Consensus 14 ~~L~emFP~ld~~~I~~vL~a~~g-dvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLEAQRG-NKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHTTTTT-CHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCC-CHHHHHHHHHcCcCCCCCCCC
Confidence 345555 2358999999999976 999999999998776554433
No 425
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=40.28 E-value=81 Score=30.31 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.6
Q ss_pred ChhHHHHHHHhCCCCHHHHHHHHHHh
Q 008350 46 SKSKLIDHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 46 s~~~~~~~~~~MGF~~~~v~~Ai~~~ 71 (569)
..++++..|+.+||++.++.+|+.++
T Consensus 163 ~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 163 VRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34689999999999999999999987
No 426
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=40.05 E-value=56 Score=31.99 Aligned_cols=67 Identities=15% Similarity=-0.027 Sum_probs=41.4
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
....|.+.|. .|+.++.++...+....-.... ......+..|+++... +-+.+...++|++|++|-.
T Consensus 25 ia~~la~~Ga---~Vvi~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 25 YAEGLAAAGA---RVILNDIRATLLAESVDTLTRK-GYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHHTTC---EEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhc-CCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 3456778896 4778898877654333222222 2345677889887642 1233445578999999864
No 427
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=39.79 E-value=8.8 Score=36.49 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=0.0
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHh
Q 008350 47 KSKLIDHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 47 ~~~~~~~~~~MGF~~~~v~~Ai~~~ 71 (569)
.++++..|+.+||++.++.+|+++.
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678899999999999999999987
No 428
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=39.21 E-value=23 Score=35.23 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=33.3
Q ss_pred CCcceeccccChhH----HHHHHHHc-CC---ceeEEEeeccCHHHHHHHHHH
Q 008350 443 DGINVLSLFSGIGG----AEVALHRL-GV---RMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 443 ~~i~vlDLFSGiGG----~slGl~~a-Gi---~~k~V~avEid~~A~~t~~~n 487 (569)
.+++|+|+-||.|- +.+-|.+. |- .+ .|+|+|+++.+.+.++.+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~-~I~atDis~~~L~~Ar~~ 156 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRW-KVFASDIDTEVLEKARSG 156 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE-EEEEEESCHHHHHHHHHT
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCe-EEEEEECCHHHHHHHHhc
Confidence 46899999999997 55555543 31 12 689999999999988764
No 429
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=39.11 E-value=25 Score=35.72 Aligned_cols=56 Identities=9% Similarity=-0.079 Sum_probs=39.3
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccc
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQ 505 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~ 505 (569)
+...+|+|+=||.|.+...+.+.+-++ .++++|+ +..+...+ ..++..++.+|+.+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~ 263 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLI-KGINFDL-PQVIENAP------PLSGIEHVGGDMFA 263 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCC------CCTTEEEEECCTTT
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC-eEEEeCh-HHHHHhhh------hcCCCEEEeCCccc
Confidence 456789999999999999998876443 5788899 66554322 12445566677654
No 430
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=35.97 E-value=11 Score=37.80 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=39.9
Q ss_pred cceeccccCh--hHHHHHH--HHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccc
Q 008350 445 INVLSLFSGI--GGAEVAL--HRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLD 507 (569)
Q Consensus 445 i~vlDLFSGi--GG~slGl--~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~ 507 (569)
-++|||=||. +|...-+ .... . -.|+++|+++......+..........+.++.+|+++..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P-~-arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~ 144 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAP-E-SRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPA 144 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCT-T-CEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCC-C-CEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChh
Confidence 5699999997 4433333 2222 1 369999999998877776543221123568899998763
No 431
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=34.80 E-value=8.2 Score=36.72 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHhc---CCCCchhHH
Q 008350 136 EKLVSLASMGYSVQEASIAMERC---GPNTSIAEL 167 (569)
Q Consensus 136 ~k~~~L~~Mgf~e~e~~~Ai~r~---G~~a~~~~l 167 (569)
+-+..|+.+||++.||..|+.++ .++.+++++
T Consensus 148 ea~~AL~~LGy~~~ea~~av~~~~~~~~~~~~e~l 182 (191)
T 1ixr_A 148 EAVMALAALGFKEAQARAVVLDLLAQNPKARAQDL 182 (191)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45788999999999999999998 234444444
No 432
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=34.69 E-value=83 Score=29.83 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=39.1
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+...|.+.|.+ |+.++.+..............+.....++..|+++... +.+.....+++++|+||..
T Consensus 39 ~a~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ 108 (266)
T 3o38_A 39 TARRALLEGAD---VVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNN 108 (266)
T ss_dssp HHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHHCCCE---EEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 33456667863 67778777654443333222222345677889887642 1122333456899999864
No 433
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=34.26 E-value=39 Score=32.27 Aligned_cols=24 Identities=8% Similarity=0.364 Sum_probs=22.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHh
Q 008350 48 SKLIDHFVGMGFSVDMVAKAIQEN 71 (569)
Q Consensus 48 ~~~~~~~~~MGF~~~~v~~Ai~~~ 71 (569)
++++..|+.+||++.++.+|+.+.
T Consensus 161 ~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 161 QEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578899999999999999999998
No 434
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=33.08 E-value=15 Score=36.14 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=33.0
Q ss_pred hccCCCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHH
Q 008350 438 KEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSW 487 (569)
Q Consensus 438 k~~~~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n 487 (569)
.+.+|..-+.+|.|+|.|+..+.+. .+ ++.+|+++..+..|+.-
T Consensus 19 ~~~lP~~~~yvEpF~GggaV~~~~~-----~~-~viNDin~~li~~~~~i 62 (259)
T 1yf3_A 19 KSHFPKYNRFVDLFCGGLSVSLNVN-----GP-VLANDIQEPIIEMYKRL 62 (259)
T ss_dssp HHTCCCCSEEEETTCTTCTTGGGSC-----SS-EEEECSCHHHHHHHHHH
T ss_pred HHhCcccCeEEEecCCccHHHHhcc-----cc-EEEecCChHHHHHHHHH
Confidence 3445556689999999998766542 15 89999999988877753
No 435
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=33.07 E-value=74 Score=30.39 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=38.7
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++...+...............++..|+++... +-+.....+++++|+||-.
T Consensus 27 a~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnn 95 (262)
T 3pk0_A 27 ATVFARAGA---NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCAN 95 (262)
T ss_dssp HHHHHHTTC---EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 335566786 366778887665443333222222345567888887642 1223334457899999864
No 436
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=32.64 E-value=82 Score=29.84 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=40.6
Q ss_pred cChhH-HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEcC
Q 008350 452 SGIGG-AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 452 SGiGG-~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGGp 528 (569)
+|+|- +...|.+.|.+ |+.++.++...+.........+.....++..|+++... +-+......++.+|+|+...
T Consensus 19 ~GIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A 95 (266)
T 3oig_A 19 RSIAWGIARSLHEAGAR---LIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIAHCI 95 (266)
T ss_dssp TSHHHHHHHHHHHTTCE---EEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CcHHHHHHHHHHHCCCE---EEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhCCeeEEEEcc
Confidence 44553 55677788974 55555554333333322222222245677889987642 11233334568999998754
No 437
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=32.40 E-value=9.4 Score=36.96 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhcCCCC
Q 008350 135 EEKLVSLASMGYSVQEASIAMERCGPNT 162 (569)
Q Consensus 135 ~~k~~~L~~Mgf~e~e~~~Ai~r~G~~a 162 (569)
++++..|+.|||.++.|-.|+.++|-+.
T Consensus 178 ~~~v~~~~~mgf~~~~~~~al~~~~~~~ 205 (216)
T 2pwq_A 178 EVIIKKITEMGFSEDQAKNALIKANWNE 205 (216)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHcCCch
Confidence 5788999999999999999999999874
No 438
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=32.29 E-value=27 Score=35.12 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=37.4
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccc
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQ 504 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~ 504 (569)
...+|+|+=||.|.+...+.+..-.. .++++|+ +..++..+. .++..+..+|+.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~ 241 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKL-KCIVFDR-PQVVENLSG------SNNLTYVGGDMF 241 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC-EEEEEEC-HHHHTTCCC------BTTEEEEECCTT
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCC-eEEEeeC-HHHHhhccc------CCCcEEEecccc
Confidence 45789999999999999998763222 5889999 766543331 234556666664
No 439
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=30.91 E-value=37 Score=31.47 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=28.3
Q ss_pred HHHHhC-------CCCHHHHHHHHHhcCCCCchh-------HHHHHHHHH
Q 008350 139 VSLASM-------GYSVQEASIAMERCGPNTSIA-------ELTDFICAA 174 (569)
Q Consensus 139 ~~L~~M-------gf~e~e~~~Ai~r~G~~a~~~-------~l~D~i~aa 174 (569)
..||.| ||+.|||-.||.-||...|+. .|+|.|++.
T Consensus 15 l~lV~liREaEk~GfspEEV~aAl~~~g~~~P~~WLk~ewp~ll~~V~~l 64 (162)
T 4dbg_B 15 LQLVSMIREGEAAGACPEEIFSALQYSGTEVPLQWLRSELPYVLEMVAEL 64 (162)
T ss_dssp HHHHHTTSTTCCSCCCHHHHHHHHHHHTCCCCHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 446666 999999999996678888887 667777653
No 440
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=30.35 E-value=1.4e+02 Score=30.75 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHhCCC--------------CHHHHHHHHHhcccccC-----CCCChhHHHHHHHh-CCCCHHHHHHHH
Q 008350 9 GFSEEVVAKAIQENGEQ--------------NTDLILEALLKHSASSS-----ASSSKSKLIDHFVG-MGFSVDMVAKAI 68 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~--------------~~~~ile~ll~~~~~~~-----~~ss~~~~~~~~~~-MGF~~~~v~~Ai 68 (569)
|.-+..+.|.|+++|.- +.+.+.++-|.=..... ..+..+.+++.|+. .||++++|..+|
T Consensus 258 GIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~~~~~f~~~rv~~~~ 337 (363)
T 3ory_A 258 GIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILVDEHDFSIDRVSTAL 337 (363)
T ss_dssp TCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHTTTTCCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHhccCCCHHHHHHHH
Confidence 44578899999999841 23344444443222111 24566777888877 999999999999
Q ss_pred HHhC
Q 008350 69 QENG 72 (569)
Q Consensus 69 ~~~G 72 (569)
+++-
T Consensus 338 ~~l~ 341 (363)
T 3ory_A 338 ERYV 341 (363)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 441
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=30.09 E-value=92 Score=29.78 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++.++...................++..|+++... .-+......++++|+||-.
T Consensus 37 a~~l~~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 105 (266)
T 4egf_A 37 ARAFAAAGAR---LVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNN 105 (266)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSCSEEEEE
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3456667863 67777777655433322211112345577889987753 1233334457899999864
No 442
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=30.03 E-value=72 Score=27.12 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=41.1
Q ss_pred ccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEE
Q 008350 451 FSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 451 FSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliG 526 (569)
.+|+|.+.. .|.+.|++ |+.+|.++..++.++. .+..++.+|+++.. .+... ...++|+++.
T Consensus 11 I~G~G~iG~~la~~L~~~g~~---V~~id~~~~~~~~~~~-------~~~~~~~gd~~~~~--~l~~~--~~~~~d~vi~ 76 (141)
T 3llv_A 11 VIGSEAAGVGLVRELTAAGKK---VLAVDKSKEKIELLED-------EGFDAVIADPTDES--FYRSL--DLEGVSAVLI 76 (141)
T ss_dssp EECCSHHHHHHHHHHHHTTCC---EEEEESCHHHHHHHHH-------TTCEEEECCTTCHH--HHHHS--CCTTCSEEEE
T ss_pred EECCCHHHHHHHHHHHHCCCe---EEEEECCHHHHHHHHH-------CCCcEEECCCCCHH--HHHhC--CcccCCEEEE
Confidence 557775444 44567864 7889999987766552 13456778877643 23321 2357899998
Q ss_pred cCC
Q 008350 527 GSP 529 (569)
Q Consensus 527 GpP 529 (569)
..|
T Consensus 77 ~~~ 79 (141)
T 3llv_A 77 TGS 79 (141)
T ss_dssp CCS
T ss_pred ecC
Confidence 877
No 443
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=29.29 E-value=1.1e+02 Score=28.79 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=37.1
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHH----HHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQ----MINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~----~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++...................++..|+..-+.+.+.+ ....++++|+||-.
T Consensus 29 a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~n 99 (252)
T 3f1l_A 29 AMTYARYGA---TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHN 99 (252)
T ss_dssp HHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHCSCCSEEEEC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 335566786 36777888765544333222222224456778883333333333 33457899999864
No 444
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=29.10 E-value=98 Score=29.51 Aligned_cols=68 Identities=13% Similarity=0.031 Sum_probs=38.4
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhh-cCCCCcccccccccccch--hhHHHHHhccCCeeEEEEcC
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQ-TNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~-~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGGp 528 (569)
...|.+.|. .|+.++.++............ .......++..|+++... .-+......++++|+|+-..
T Consensus 25 a~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA 95 (265)
T 3lf2_A 25 VELLLEAGA---AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNA 95 (265)
T ss_dssp HHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345666786 367778887655444332222 112224566788887642 11233334568999998743
No 445
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=29.08 E-value=33 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=22.1
Q ss_pred HHHHHHhCCCCHHHH--HHHHHHhCCCchhHHHHHH
Q 008350 50 LIDHFVGMGFSVDMV--AKAIQENGEENTDSILETL 83 (569)
Q Consensus 50 ~~~~~~~MGF~~~~v--~~Ai~~~G~~~~d~~le~L 83 (569)
.+.++..|||.-+.- .+.++..+. |+.+.||.|
T Consensus 13 al~qMl~MGF~negGWLt~LL~~k~g-DI~~aLD~l 47 (52)
T 1q02_A 13 SLSQMLSMGFSDEGGWLTRLLQTKNY-DIGAALDTI 47 (52)
T ss_dssp HHHHHHTTTCCCTTSHHHHHHHHTTT-CHHHHHHHH
T ss_pred HHHHHHHcCCCccccHHHHHHHHccC-CHHHHHHHh
Confidence 356889999997654 355554443 467788776
No 446
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=28.53 E-value=1.1e+02 Score=29.31 Aligned_cols=75 Identities=16% Similarity=0.237 Sum_probs=40.8
Q ss_pred ccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCccccccccccc-ch-hhH-HHHHhccCCeeE
Q 008350 451 FSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQL-DA-NRI-EQMINAFGGFDL 523 (569)
Q Consensus 451 FSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i-~~-~~l-~~~~~~~g~~Dl 523 (569)
--|.||+-. .|.+.|. .|+.+..++.............+.....++..|+++. .. +.+ ..+...++++|+
T Consensus 18 TGas~GIG~~~a~~L~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~ 94 (311)
T 3o26_A 18 TGGNKGIGFEICKQLSSNGI---MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDI 94 (311)
T ss_dssp SSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHSSCCE
T ss_pred ecCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCCCCCE
Confidence 344455433 4556786 4677777776543332222222223455677899886 32 122 222234689999
Q ss_pred EEEcC
Q 008350 524 VIGGS 528 (569)
Q Consensus 524 liGGp 528 (569)
||...
T Consensus 95 lv~nA 99 (311)
T 3o26_A 95 LVNNA 99 (311)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98643
No 447
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=28.14 E-value=1.4e+02 Score=27.81 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=40.7
Q ss_pred ccChhHHH----HHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHH----HhccCCee
Q 008350 451 FSGIGGAE----VALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQM----INAFGGFD 522 (569)
Q Consensus 451 FSGiGG~s----lGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~----~~~~g~~D 522 (569)
.-|.||+- ..|.+.|. .|+.++.++...+.........+.+...++..|+..-+.+.+..+ ...++++|
T Consensus 20 TGas~gIG~~ia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~g~id 96 (247)
T 3i1j_A 20 TGAARGIGAAAARAYAAHGA---SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEFGRLD 96 (247)
T ss_dssp SSTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHHSCCS
T ss_pred eCCCChHHHHHHHHHHHCCC---EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhCCCCC
Confidence 44445543 35556786 367778887665544433333333445556666633333333332 33468999
Q ss_pred EEEEc
Q 008350 523 LVIGG 527 (569)
Q Consensus 523 lliGG 527 (569)
+||-.
T Consensus 97 ~lv~n 101 (247)
T 3i1j_A 97 GLLHN 101 (247)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99864
No 448
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=27.90 E-value=1.1e+02 Score=30.24 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
....|.+.|. .|+.++.++...+....- .+ .....+..|+++... +-+.+...++|++|+||-.
T Consensus 45 iA~~la~~Ga---~V~i~~r~~~~l~~~~~~---~g-~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNN 110 (273)
T 4fgs_A 45 AAKRFVAEGA---RVFITGRRKDVLDAAIAE---IG-GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVN 110 (273)
T ss_dssp HHHHHHHTTC---EEEEEESCHHHHHHHHHH---HC-TTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred HHHHHHHCCC---EEEEEECCHHHHHHHHHH---cC-CCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4556778897 477888888766544322 22 234567789887653 1233344568999999853
No 449
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=27.80 E-value=1.1e+02 Score=31.26 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHhcc--c-------------------------ccCCCCChhHHHHHH-HhCCCC
Q 008350 9 GFSEEVVAKAIQENGEQNTDLILEALLKHS--A-------------------------SSSASSSKSKLIDHF-VGMGFS 60 (569)
Q Consensus 9 Gf~~~~v~k~i~e~g~~~~~~ile~ll~~~--~-------------------------~~~~~ss~~~~~~~~-~~MGF~ 60 (569)
|.-+..+.|.|+++|. .+.|++.+=+.+ . +.-..+..+.++..| -.+||+
T Consensus 239 GiG~KtA~kll~~~gs--le~i~~~~~~~k~~~~~~~~~~~~r~l~l~~~V~~~~~~~l~~~~pd~~~l~~fl~~~~~f~ 316 (341)
T 3q8k_A 239 GIGPKRAVDLIQKHKS--IEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKWSEPNEEELIKFMCGEKQFS 316 (341)
T ss_dssp TCCHHHHHHHHHHHCS--HHHHHHHSCTTTSCCCTTCCHHHHHHHHHSCCCCCTTTSCCCCCCCCHHHHHHHHTTTTCCC
T ss_pred CccHHHHHHHHHHcCC--HHHHHHHHHhcCCCCCcccchHHHHHHhCCCCCCCCcccccCCCCCCHHHHHHHHHHhcCCC
Confidence 4557899999999984 666776552100 0 001234556677777 569999
Q ss_pred HHHHHHHHHHhC
Q 008350 61 VDMVAKAIQENG 72 (569)
Q Consensus 61 ~~~v~~Ai~~~G 72 (569)
+++|..+++++-
T Consensus 317 ~~rv~~~~~~l~ 328 (341)
T 3q8k_A 317 EERIRSGVKRLS 328 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 450
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=27.37 E-value=76 Score=27.29 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=41.8
Q ss_pred cccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEE
Q 008350 450 LFSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVI 525 (569)
Q Consensus 450 LFSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~Dlli 525 (569)
+.+|+|-+.. -|.+.|+ .|+.+|.++..++.++. .+..++.+|.++.. .+... ...+.|+++
T Consensus 11 iIiG~G~~G~~la~~L~~~g~---~v~vid~~~~~~~~~~~-------~g~~~i~gd~~~~~--~l~~a--~i~~ad~vi 76 (140)
T 3fwz_A 11 LLVGYGRVGSLLGEKLLASDI---PLVVIETSRTRVDELRE-------RGVRAVLGNAANEE--IMQLA--HLECAKWLI 76 (140)
T ss_dssp EEECCSHHHHHHHHHHHHTTC---CEEEEESCHHHHHHHHH-------TTCEEEESCTTSHH--HHHHT--TGGGCSEEE
T ss_pred EEECcCHHHHHHHHHHHHCCC---CEEEEECCHHHHHHHHH-------cCCCEEECCCCCHH--HHHhc--CcccCCEEE
Confidence 3678876544 3445686 48899999988776653 24556788887653 22221 124688888
Q ss_pred EcCC
Q 008350 526 GGSP 529 (569)
Q Consensus 526 GGpP 529 (569)
...|
T Consensus 77 ~~~~ 80 (140)
T 3fwz_A 77 LTIP 80 (140)
T ss_dssp ECCS
T ss_pred EECC
Confidence 7665
No 451
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=26.98 E-value=24 Score=34.50 Aligned_cols=58 Identities=14% Similarity=0.306 Sum_probs=39.3
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCeeEEEE
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIG 526 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliG 526 (569)
....|.+.|.+ |+.++.++...+. ........+..|+++. +.+.+++++++++|+++-
T Consensus 27 ia~~la~~Ga~---Vv~~~~~~~~~~~-------~~~~~~~~~~~Dv~~~--~~v~~~~~~~g~iDiLVN 84 (242)
T 4b79_A 27 IAMQFAELGAE---VVALGLDADGVHA-------PRHPRIRREELDITDS--QRLQRLFEALPRLDVLVN 84 (242)
T ss_dssp HHHHHHHTTCE---EEEEESSTTSTTS-------CCCTTEEEEECCTTCH--HHHHHHHHHCSCCSEEEE
T ss_pred HHHHHHHCCCE---EEEEeCCHHHHhh-------hhcCCeEEEEecCCCH--HHHHHHHHhcCCCCEEEE
Confidence 45577788974 6777887654321 1233455667888764 457777888999999985
No 452
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=26.45 E-value=1.2e+02 Score=28.70 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=37.9
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhc--CCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQT--NQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~--N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++............. +.....++..|+++... +.+.....+++++|+||-.
T Consensus 24 a~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnn 94 (250)
T 3nyw_A 24 AAGLATDGY---RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNA 94 (250)
T ss_dssp HHHHHHHTC---EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred HHHHHHCCC---EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 335556786 3667778776554433222222 11345567788887642 1233334456899999864
No 453
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=25.67 E-value=1.2e+02 Score=24.29 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCc
Q 008350 43 ASSSKSKLIDHFVGMGFSVDMVAKAIQENGEEN 75 (569)
Q Consensus 43 ~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~ 75 (569)
..++.++.+..|..-|-..+||..|+++.|...
T Consensus 31 ~~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 31 RQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp GGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred hhCCHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 356688899999999999999999999998743
No 454
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=25.34 E-value=74 Score=31.25 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++.++.............+.....++..|+++... +-+.....+++++|+||-.
T Consensus 58 a~~la~~G~~---V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 126 (293)
T 3rih_A 58 ATVFARAGAN---VAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCAN 126 (293)
T ss_dssp HHHHHHTTCE---EEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3355667874 56667766544333322222221345567788887642 1233334457899999864
No 455
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=24.74 E-value=1.4e+02 Score=28.77 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHHHcCCceeEEEeecc-CHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDI-SEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEi-d~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++. ++...+...............++..|+++... +.+.....+++++|+||-.
T Consensus 42 a~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n 111 (281)
T 3v2h_A 42 ARTLAKAGAN---IVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNN 111 (281)
T ss_dssp HHHHHHTTCE---EEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 3355667863 566666 44433333322221212344566788887642 1223334457899999864
No 456
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.72 E-value=1.7e+02 Score=27.82 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=39.6
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+...|.+.|.+ |+.++.++...+......... .....++..|+++... +-+.+....++++|+||-.
T Consensus 27 ia~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 95 (264)
T 3ucx_A 27 LARRCAEQGAD---LVLAARTVERLEDVAKQVTDT-GRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINN 95 (264)
T ss_dssp HHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred HHHHHHHCcCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 34466678973 677788776554443332222 2345567788887642 1233344467899999864
No 457
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=24.51 E-value=38 Score=33.90 Aligned_cols=68 Identities=18% Similarity=-0.019 Sum_probs=43.4
Q ss_pred cCCCCcceeccccChhHHHHHHHHc-CC-c-eeEEEeec--cCHHHHHHHHHHHhhcCC-CCccccc---c-cccccchh
Q 008350 440 MYPDGINVLSLFSGIGGAEVALHRL-GV-R-MKNVVSVD--ISEVNRNIVRSWWEQTNQ-KGTLIDF---A-DVQQLDAN 509 (569)
Q Consensus 440 ~~~~~i~vlDLFSGiGG~slGl~~a-Gi-~-~k~V~avE--id~~A~~t~~~n~~~~N~-~~~~~~~---~-DI~~i~~~ 509 (569)
.+..+.+|+||=|+.||.+.-..+. ++ . .-.++++| +.+. ... +++.++. + |+.++..
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~-----------~~~~~Gv~~i~~~~G~Df~~~~~- 137 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM-----------LMQSYGWNIVTMKSGVDVFYKPS- 137 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC-----------CCCSTTGGGEEEECSCCGGGSCC-
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC-----------cccCCCceEEEeeccCCccCCCC-
Confidence 5566899999999999999977664 22 1 12467777 3221 111 3444443 5 8887541
Q ss_pred hHHHHHhccCCeeEEEEcC
Q 008350 510 RIEQMINAFGGFDLVIGGS 528 (569)
Q Consensus 510 ~l~~~~~~~g~~DlliGGp 528 (569)
.++|+|+..-
T Consensus 138 ---------~~~DvVLSDM 147 (269)
T 2px2_A 138 ---------EISDTLLCDI 147 (269)
T ss_dssp ---------CCCSEEEECC
T ss_pred ---------CCCCEEEeCC
Confidence 3689999774
No 458
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=24.02 E-value=44 Score=29.52 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCe
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGF 521 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~ 521 (569)
..+.+|+|+-||. +.+|+++...+.++..+. ....+..+|+.++....++ .+.+
T Consensus 11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~----~~~~~~~~d~~~~~~~~~~-----~~~f 64 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG----NEGRVSVENIKQLLQSAHK-----ESSF 64 (176)
T ss_dssp CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT----TTSEEEEEEGGGGGGGCCC-----SSCE
T ss_pred CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc----cCcEEEEechhcCccccCC-----CCCE
Confidence 4567899998774 238888888887776532 1356778888876531001 1579
Q ss_pred eEEEEcC
Q 008350 522 DLVIGGS 528 (569)
Q Consensus 522 DlliGGp 528 (569)
|+|+...
T Consensus 65 D~V~~~~ 71 (176)
T 2ld4_A 65 DIILSGL 71 (176)
T ss_dssp EEEEECC
T ss_pred eEEEECC
Confidence 9999653
No 459
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=23.50 E-value=1.1e+02 Score=29.49 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=39.6
Q ss_pred ccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEE
Q 008350 451 FSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLV 524 (569)
Q Consensus 451 FSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~Dll 524 (569)
--|.||+-. .|.+.|. .|+.++.+....................++..|+++... ..+.....+++++|+|
T Consensus 33 TGas~GIG~aia~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 109 (277)
T 4fc7_A 33 TGGGSGIGFRIAEIFMRHGC---HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDIL 109 (277)
T ss_dssp ETTTSHHHHHHHHHHHTTTC---EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred eCCCchHHHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 344445433 4556786 366677776543332221111112345567788887642 1233334456899999
Q ss_pred EEc
Q 008350 525 IGG 527 (569)
Q Consensus 525 iGG 527 (569)
|-.
T Consensus 110 v~n 112 (277)
T 4fc7_A 110 INC 112 (277)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
No 460
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=22.80 E-value=1.6e+02 Score=28.06 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcC-CCCcccccccccccchhhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTN-QKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N-~~~~~~~~~DI~~i~~~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++.............. ......+..|+++. +.+.+++.+++++|+|+-.
T Consensus 27 a~~l~~~G~---~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~g~id~lv~n 92 (267)
T 3t4x_A 27 ATSLVAEGA---NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE--QGCQDVIEKYPKVDILINN 92 (267)
T ss_dssp HHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH--HHHHHHHHHCCCCSEEEEC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH--HHHHHHHHhcCCCCEEEEC
Confidence 335566786 46777887765443322222111 12233556787764 3456666778899999864
No 461
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=22.70 E-value=1.2e+02 Score=29.38 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=40.1
Q ss_pred ccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEE
Q 008350 451 FSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLV 524 (569)
Q Consensus 451 FSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~Dll 524 (569)
--|.||+-. .|.+.|. .|+.++.++...+...............++..|+++... +-+.....+++.+|+|
T Consensus 39 TGas~GIG~aia~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 115 (281)
T 4dry_A 39 TGGGTGVGRGIAQALSAEGY---SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLL 115 (281)
T ss_dssp TTTTSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred eCCCCHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 444455433 4556786 367778887655433322221111112466788887642 1223333456899999
Q ss_pred EEc
Q 008350 525 IGG 527 (569)
Q Consensus 525 iGG 527 (569)
|-.
T Consensus 116 vnn 118 (281)
T 4dry_A 116 VNN 118 (281)
T ss_dssp EEC
T ss_pred EEC
Confidence 864
No 462
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.40 E-value=80 Score=27.31 Aligned_cols=60 Identities=8% Similarity=0.191 Sum_probs=35.7
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHH
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAK 66 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~ 66 (569)
.+||+..-|...-.++-.+-.+.+.+.|...............|+..|..+|..+.-...
T Consensus 44 ~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~~AT~~~L~~AL~~~~l~~~v~~~ 103 (115)
T 2o71_A 44 SLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLH 103 (115)
T ss_dssp HTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHTTCCTHHHHH
T ss_pred HcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcCcHHHHHHHHHHHcCCCHHHHHH
Confidence 368999999888888866445688888877544322222334444444444444444333
No 463
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=22.17 E-value=67 Score=31.35 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=38.9
Q ss_pred cChhH-HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 452 SGIGG-AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 452 SGiGG-~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+|+|- ....|.+.|.+ |+.++.++...+..+.-. . ..+....+..|+++... +-+.+..+++|++|+++-.
T Consensus 17 ~GIG~aia~~la~~Ga~---Vv~~~r~~~~~~~~~~~~-~-~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDiLVNn 90 (258)
T 4gkb_A 17 SGIGGAISMRLAEERAI---PVVFARHAPDGAFLDALA-Q-RQPRATYLPVELQDDAQCRDAVAQTIATFGRLDGLVNN 90 (258)
T ss_dssp SHHHHHHHHHHHHTTCE---EEEEESSCCCHHHHHHHH-H-HCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CHHHHHHHHHHHHcCCE---EEEEECCcccHHHHHHHH-h-cCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 34442 34567788974 444555433222222111 1 13345677889887642 2234445578999999864
No 464
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=22.12 E-value=1.4e+02 Score=28.59 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=40.2
Q ss_pred ccChhH-HHHHHHHcCCceeEEEeeccCH--HHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEE
Q 008350 451 FSGIGG-AEVALHRLGVRMKNVVSVDISE--VNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVI 525 (569)
Q Consensus 451 FSGiGG-~slGl~~aGi~~k~V~avEid~--~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~Dlli 525 (569)
++|+|- +...|.+.|.+ |+.++.+. ...+.+.. ..+...++..|+++... +-+......++++|+||
T Consensus 37 ~~GIG~~ia~~l~~~G~~---V~~~~r~~~~~~~~~l~~-----~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li 108 (280)
T 3nrc_A 37 NKSIAYGIAKAMHREGAE---LAFTYVGQFKDRVEKLCA-----EFNPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIV 108 (280)
T ss_dssp TTCHHHHHHHHHHHTTCE---EEEEECTTCHHHHHHHHG-----GGCCSEEEECCTTCHHHHHHHHHHHHHHCSSCCEEE
T ss_pred CCCHHHHHHHHHHHcCCE---EEEeeCchHHHHHHHHHH-----hcCCceEEEeecCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 355663 56677788974 55555554 33333332 12345677889887642 11233334568999998
Q ss_pred EcC
Q 008350 526 GGS 528 (569)
Q Consensus 526 GGp 528 (569)
-..
T Consensus 109 ~nA 111 (280)
T 3nrc_A 109 HSI 111 (280)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 465
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=21.97 E-value=65 Score=32.29 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCCcceeccccChhHHHHHHHHcCCceeEEEeeccCH
Q 008350 442 PDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISE 478 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~ 478 (569)
+...+|+|+=||.|.+...+.+..-.. .++++|+.+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~ 218 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAE 218 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTE-EEEEEECHH
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCC-EEEEecCHH
Confidence 456789999999999999998865443 578889843
No 466
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=21.96 E-value=1.8e+02 Score=28.13 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHcCCceeEEEeec-cCHHHHHHHHHHHhhcCCCCcccccccccccc-----------------h--hhHHHHHhcc
Q 008350 459 VALHRLGVRMKNVVSVD-ISEVNRNIVRSWWEQTNQKGTLIDFADVQQLD-----------------A--NRIEQMINAF 518 (569)
Q Consensus 459 lGl~~aGi~~k~V~avE-id~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~-----------------~--~~l~~~~~~~ 518 (569)
..|.+.|.+ |+.++ .++...................++..|+++.. . +.+......+
T Consensus 27 ~~la~~G~~---V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 103 (291)
T 1e7w_A 27 EGLHAEGYA---VCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHW 103 (291)
T ss_dssp HHHHHTTCE---EEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCe---EEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccchHHHHHHHHHHHHHhc
Confidence 355667863 66677 77655443332221011223456778888765 2 1122333456
Q ss_pred CCeeEEEEc
Q 008350 519 GGFDLVIGG 527 (569)
Q Consensus 519 g~~DlliGG 527 (569)
+++|+||..
T Consensus 104 g~iD~lvnn 112 (291)
T 1e7w_A 104 GRCDVLVNN 112 (291)
T ss_dssp SCCCEEEEC
T ss_pred CCCCEEEEC
Confidence 899999864
No 467
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=21.76 E-value=1.8e+02 Score=27.96 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+...|.+.|. .|+.++.++.......... .....++..|+++... ..+......++++|+||-.
T Consensus 45 ia~~la~~G~---~V~~~~r~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 110 (277)
T 3gvc_A 45 VARRLADEGC---HVLCADIDGDAADAAATKI----GCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVAN 110 (277)
T ss_dssp HHHHHHHTTC---EEEEEESSHHHHHHHHHHH----CSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred HHHHHHHCCC---EEEEEeCCHHHHHHHHHHc----CCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3446667896 4677888877655443321 2234567788887642 1233334456899999864
No 468
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=21.73 E-value=1.4e+02 Score=28.22 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++.+.............. .....++..|+++... ..+.....+++++|+|+-.
T Consensus 29 a~~l~~~G~~---V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 96 (256)
T 3gaf_A 29 AGTFAKAGAS---VVVTDLKSEGAEAVAAAIRQA-GGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNN 96 (256)
T ss_dssp HHHHHHHTCE---EEEEESSHHHHHHHHHHHHHT-TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3355667863 677788876554443332222 2345567788887642 1233334456899999864
No 469
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=21.65 E-value=1.3e+02 Score=29.23 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+...|.+.|.+ |+.++.++...+......... +...++..|+++... +-+.....+++++|+||-.
T Consensus 48 ia~~la~~G~~---V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn 115 (296)
T 3k31_A 48 IAKAVCAQGAE---VALTYLSETFKKRVDPLAESL--GVKLTVPCDVSDAESVDNMFKVLAEEWGSLDFVVHA 115 (296)
T ss_dssp HHHHHHHTTCE---EEEEESSGGGHHHHHHHHHHH--TCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHCCCE---EEEEeCChHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 55567778974 666666654333333221111 234567788887642 1123333456899999864
No 470
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=21.64 E-value=99 Score=32.18 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=40.2
Q ss_pred CCCcceeccccChhHHHHHHH-HcCCceeEEEeeccCHHHHHHHHHHHhh
Q 008350 442 PDGINVLSLFSGIGGAEVALH-RLGVRMKNVVSVDISEVNRNIVRSWWEQ 490 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slGl~-~aGi~~k~V~avEid~~A~~t~~~n~~~ 490 (569)
+.+-+|+|+=|++|..++.+. +.+.+...|+|+|-++.+.+.++.|...
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 456789999999999999877 5443334799999999999999988765
No 471
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=21.62 E-value=1.4e+02 Score=28.13 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++........ ..+...++..|+++... +-+.+...+++++|+|+-.
T Consensus 19 a~~l~~~G~---~V~~~~r~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n 82 (247)
T 3dii_A 19 CLDFLEAGD---KVCFIDIDEKRSADFAK-----ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNN 82 (247)
T ss_dssp HHHHHHTTC---EEEEEESCHHHHHHHHT-----TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHH-----hcccCCeEEeeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345666786 46778888776554432 23344467788886542 1223333456899999864
No 472
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=21.39 E-value=54 Score=32.98 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=44.1
Q ss_pred CCcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccchhhHHHHHhccCCee
Q 008350 443 DGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFD 522 (569)
Q Consensus 443 ~~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~~~l~~~~~~~g~~D 522 (569)
...+|+|+=||.|.+...+.+..-++ .++++|+ +..++..+ ..++..+..+|+.+ . + +.+|
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~------~~~~v~~~~~d~~~-~---~-------~~~D 253 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHL-KCTVFDQ-PQVVGNLT------GNENLNFVGGDMFK-S---I-------PSAD 253 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTS-EEEEEEC-HHHHSSCC------CCSSEEEEECCTTT-C---C-------CCCS
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC-eEEEecc-HHHHhhcc------cCCCcEEEeCccCC-C---C-------CCce
Confidence 45689999999999999998875333 4788898 55443222 12345566666654 1 1 2467
Q ss_pred EEEEcCCCC
Q 008350 523 LVIGGSPCN 531 (569)
Q Consensus 523 lliGGpPCQ 531 (569)
+++......
T Consensus 254 ~v~~~~vlh 262 (358)
T 1zg3_A 254 AVLLKWVLH 262 (358)
T ss_dssp EEEEESCGG
T ss_pred EEEEccccc
Confidence 777654433
No 473
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=21.25 E-value=48 Score=33.39 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=26.2
Q ss_pred CCCcceeccccChhHHHHH-HHHcCCceeEEEeeccCH
Q 008350 442 PDGINVLSLFSGIGGAEVA-LHRLGVRMKNVVSVDISE 478 (569)
Q Consensus 442 ~~~i~vlDLFSGiGG~slG-l~~aGi~~k~V~avEid~ 478 (569)
..+.+||||.||.||++.- +.+.|. ..|.++++..
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~gv--~sV~GvdvG~ 124 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLKNV--KKVMAFTLGV 124 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCC--CeeeeEEecc
Confidence 3456899999999999994 545553 4677888754
No 474
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=21.09 E-value=1.6e+02 Score=28.21 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=38.8
Q ss_pred ccChhHHHH----HHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEE
Q 008350 451 FSGIGGAEV----ALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLV 524 (569)
Q Consensus 451 FSGiGG~sl----Gl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~Dll 524 (569)
.-|.||+-. .|.+.|. .|++++.++.............+.....++..|+++... ..+......++++|+|
T Consensus 34 TGasggIG~~la~~l~~~G~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~l 110 (286)
T 1xu9_A 34 TGASKGIGREMAYHLAKMGA---HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDML 110 (286)
T ss_dssp SSCSSHHHHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTSCSEE
T ss_pred eCCCcHHHHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 344455443 4456786 477778887655443322211222234566788886532 1122233346899999
Q ss_pred EE
Q 008350 525 IG 526 (569)
Q Consensus 525 iG 526 (569)
|-
T Consensus 111 i~ 112 (286)
T 1xu9_A 111 IL 112 (286)
T ss_dssp EE
T ss_pred EE
Confidence 83
No 475
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.81 E-value=3.1e+02 Score=22.97 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHhCCCCHHHHHHHHHhcccccCCCCChhHHHHHHHhCCCCHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008350 7 GMGFSEEVVAKAIQENGEQNTDLILEALLKHSASSSASSSKSKLIDHFVGMGFSVDMVAKAIQENGEENTDSILETLLTY 86 (569)
Q Consensus 7 ~MGf~~~~v~k~i~e~g~~~~~~ile~ll~~~~~~~~~ss~~~~~~~~~~MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~~ 86 (569)
.+||+..-|.. |+++-.+..+.+.+.|.... .--+.+-..+....|+.++|. ..++|.|..-
T Consensus 38 ~Lg~~~~~I~~-ie~~~~~~~eq~~~mL~~W~--------------~r~G~~AT~~~L~~AL~~~~~---~dvae~l~~~ 99 (110)
T 1wxp_A 38 YLEMKDSEIRQ-IECDSEDMKMRAKQLLVAWQ--------------DQEGVHATPENLINALNKSGL---SDLAESLTND 99 (110)
T ss_dssp TTTCCHHHHHH-HHHHCSSHHHHHHHHHHHHH--------------HHHGGGCCHHHHHHHHHHTTC---HHHHHHHHCC
T ss_pred HhCCCHHHHHH-HHHcCCCHHHHHHHHHHHHH--------------HhhCcCcHHHHHHHHHHHcCc---HHHHHHHHHH
Confidence 46899887766 55665545567777776632 223455677888899999998 5577777653
Q ss_pred h
Q 008350 87 S 87 (569)
Q Consensus 87 ~ 87 (569)
+
T Consensus 100 ~ 100 (110)
T 1wxp_A 100 N 100 (110)
T ss_dssp C
T ss_pred h
Confidence 3
No 476
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.77 E-value=1.7e+02 Score=28.14 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.1
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|.+ |+.++.++............. .....++..|+++... ..+......++++|+||-.
T Consensus 41 a~~la~~G~~---V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n 108 (279)
T 3sju_A 41 ARTLAARGIA---VYGCARDAKNVSAAVDGLRAA-GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNS 108 (279)
T ss_dssp HHHHHHTTCE---EEEEESCHHHHHHHHHHHHTT-TCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred HHHHHHCCCE---EEEEeCCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 3355667863 677788876554433322222 2244566788887642 1233334456899999864
No 477
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=20.48 E-value=1.9e+02 Score=27.68 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=38.7
Q ss_pred HHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 457 AEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 457 ~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
+...|.+.|. .|+.++.++............. .....++..|+++... +.+.....+++++|+|+-.
T Consensus 42 ia~~la~~G~---~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~n 110 (271)
T 4ibo_A 42 MAEGLAVAGA---RILINGTDPSRVAQTVQEFRNV-GHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNN 110 (271)
T ss_dssp HHHHHHHTTC---EEEECCSCHHHHHHHHHHHHHT-TCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred HHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 3345666786 4677788876554433322222 2345567788887642 1223334457899999864
No 478
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.43 E-value=1.8e+02 Score=27.88 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++...+.........+ .....+..|+++... ..+......++++|+||-.
T Consensus 45 a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 112 (270)
T 3ftp_A 45 ALELARRGA---MVIGTATTEAGAEGIGAAFKQAG-LEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNN 112 (270)
T ss_dssp HHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHT-CCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCC---EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345667786 46777787765544433332222 234566778887642 1223334456899999864
No 479
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=20.34 E-value=1.3e+02 Score=30.41 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=36.3
Q ss_pred CcceeccccChhHHHHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccc
Q 008350 444 GINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADV 503 (569)
Q Consensus 444 ~i~vlDLFSGiGG~slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI 503 (569)
.-+|+|+=||.|.+...+.+..-+++ ++..|. +..+...+.++.......+.+..+|+
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~-~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~ 237 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCK-ITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF 237 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCE-EEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCce-eEeccC-HHHHHHHHHhhhhcccCceeeecCcc
Confidence 45799999999999999998754443 445665 55666666554322222334444554
No 480
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=20.02 E-value=1.7e+02 Score=28.28 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=38.7
Q ss_pred HHHHHHcCCceeEEEeeccCHHHHHHHHHHHhhcCCCCcccccccccccch--hhHHHHHhccCCeeEEEEc
Q 008350 458 EVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDA--NRIEQMINAFGGFDLVIGG 527 (569)
Q Consensus 458 slGl~~aGi~~k~V~avEid~~A~~t~~~n~~~~N~~~~~~~~~DI~~i~~--~~l~~~~~~~g~~DlliGG 527 (569)
...|.+.|. .|+.++.++............. .....++..|+++... .-+.....+++++|+||-.
T Consensus 25 a~~la~~G~---~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnn 92 (280)
T 3tox_A 25 ALLFAREGA---KVVVTARNGNALAELTDEIAGG-GGEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNN 92 (280)
T ss_dssp HHHHHHTTC---EEEECCSCHHHHHHHHHHHTTT-TCCEEECCCCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred HHHHHHCCC---EEEEEECCHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 345666786 3777888877655444332211 2344567788887642 1123333456899999864
No 481
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=20.00 E-value=1.6e+02 Score=23.02 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHhCCCchhHHHHHHHH
Q 008350 49 KLIDHFVG-MGFSVDMVAKAIQENGEENTDSILETLLT 85 (569)
Q Consensus 49 ~~~~~~~~-MGF~~~~v~~Ai~~~G~~~~d~~le~Ll~ 85 (569)
.++..|.. -|.+-.+..+||++++. |.++.++.|=.
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~G-Di~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGG-DLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTS-CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 55777776 69999999999999996 66888888754
Done!