BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008351
(569 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 162/555 (29%), Positives = 253/555 (45%), Gaps = 62/555 (11%)
Query: 23 AAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNE-SPYNITIH 81
+ I + + V+ + C + ++ +NG+ PGPTIR + GD++VV + N+ + IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 82 WHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLR-ATVYGAL 140
WHGI Q +PWADG I+QC I PG ++ Y F V N GT ++HGH+ + R A +YG+L
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVDN-PGTFFYHGHLGMQRSAGLYGSL 119
Query: 141 IIRPKSGHEYPYPKPDKEVPILLGEWWNANV----VDVENQAQITGGAPNISDAYTINGK 196
I+ P G + P+ D E+ +LL +WW+ ++ V + ++ G P +NG+
Sbjct: 120 IVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEP---QTILLNGR 175
Query: 197 -----------PGDLYPCSQNPNQI---YKLKVVEGKTYLLRIINAALNNQLFFKIANHK 242
+L PC ++ Y V KTY +RI + L F I NH+
Sbjct: 176 GQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQ 235
Query: 243 FTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQ-PVGXXXXXXXXXXXXPQIPFDNTT 301
VV D +Y P+ T + I G++ VL+ DQ P P P
Sbjct: 236 LLVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTP----- 290
Query: 302 TRGIVVYDGAASSANPLM----PALPAFNDTPTAHKFYSNLTGLTDGPHWVPVPRQVDKH 357
G+ + + +S + L P PA++D + F +T P P + ++
Sbjct: 291 -PGLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPK---PPVKFNRR 346
Query: 358 MFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFP 417
+F+ Q ++N+ S P + L A +N+ + N P
Sbjct: 347 IFLL------------NTQNVINGYVKWAINDVSLALPPT-PYLGAMKYNLLHAFDQNPP 393
Query: 418 NNP-PLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIA---VENHPIH 473
P +D P + T + V K V+++LQN ++ E HP H
Sbjct: 394 PEVFPEDYDIDTPPTNEKTRIG-----NGVYQFKIGEVVDVILQNANMMKENLSETHPWH 448
Query: 474 IHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHC 533
+HG DF VL G G ++A + NL NP RNT+ + GW IRF A+NPGVW HC
Sbjct: 449 LHGHDFWVLGYGDGKFSAEEE-SSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHC 507
Query: 534 HLDVHLPWGLATAFV 548
H++ HL G+ F
Sbjct: 508 HIEPHLHMGMGVVFA 522
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 15/103 (14%)
Query: 448 TLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRN 507
T++ N+ +V++ T + E IH HG +L +G + I +
Sbjct: 35 TIRANAGDSVVVELTNKLHTEGVVIHWHG----ILQRGTPWADGTASISQ---------- 80
Query: 508 TIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
A+ G F +NPG +F H HL + GL + +V+
Sbjct: 81 -CAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVD 122
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 148/518 (28%), Positives = 229/518 (44%), Gaps = 82/518 (15%)
Query: 44 RVITAVNGRLPGPTIRVHEGDTLVVHVFNE--SPYNI---TIHWHGIFQLLSPWADGPNM 98
R VNG + GP IR + D ++V N+ +P + +IHWHG+FQ + WADG +
Sbjct: 23 RAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADG 81
Query: 99 ITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSG-HEYPYPKPD 156
+ QCPI+PG ++ YKF GT W+H H + G ++I + H Y + D
Sbjct: 82 VNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDD 141
Query: 157 KEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVV 216
+ I L +W++ ++ AQ DA INGK + + ++ + V
Sbjct: 142 ENTIITLADWYHIPAPSIQGAAQ--------PDATLINGKGRYVGGPAA---ELSIVNVE 190
Query: 217 EGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKAD 276
+GK Y +R+I+ + + F I H+ T++ VD T+P+ D + I GQ +L A+
Sbjct: 191 QGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDAN 250
Query: 277 QPVGXXXXXXXXXXXXPQIP--FDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKF 334
QPV + F N I+ Y GAA +A+P A P A
Sbjct: 251 QPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAA-NADPTTSANPN-----PAQLN 304
Query: 335 YSNLTGLTD-GPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQ 393
++L L D +P P D ++ +G + G RF ++N +++
Sbjct: 305 EADLHALIDPAAPGIPTPGAADVNLRFQLGFS--------------GGRF--TINGTAYE 348
Query: 394 FPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNS 453
P+ +LLQ + G + N LL A SV L N
Sbjct: 349 SPSVPTLLQI----MSGAQSAN--------------------DLLPA---GSVYELPRNQ 381
Query: 454 TVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPV 513
VE+V+ L HP H+HG F V+ + +N VNP +R+ +++ V
Sbjct: 382 VVELVVPAGVLGGP--HPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGV 431
Query: 514 GGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
G V IRF +NPG WF HCH++ HL GLA F +
Sbjct: 432 TGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 148/518 (28%), Positives = 229/518 (44%), Gaps = 82/518 (15%)
Query: 44 RVITAVNGRLPGPTIRVHEGDTLVVHVFNE--SPYNI---TIHWHGIFQLLSPWADGPNM 98
R VNG + GP IR + D ++V N+ +P + +IHWHG+FQ + WADG +
Sbjct: 23 RAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADG 81
Query: 99 ITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSG-HEYPYPKPD 156
+ QCPI+PG ++ YKF GT W+H H + G ++I + H Y + D
Sbjct: 82 VNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDD 141
Query: 157 KEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVV 216
+ I L +W++ ++ AQ DA INGK + + ++ + V
Sbjct: 142 ENTIITLADWYHIPAPSIQGAAQ--------PDATLINGKGRYVGGPAA---ELSIVNVE 190
Query: 217 EGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKAD 276
+GK Y +R+I+ + + F I H+ T++ VD T+P+ D + I GQ +L A+
Sbjct: 191 QGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDAN 250
Query: 277 QPVGXXXXXXXXXXXXPQIP--FDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKF 334
QPV + F N I+ Y GAA +A+P A P A
Sbjct: 251 QPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAA-NADPTTSANPN-----PAQLN 304
Query: 335 YSNLTGLTD-GPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQ 393
++L L D +P P D ++ +G + G RF ++N +++
Sbjct: 305 EADLHALIDPAAPGIPTPGAADVNLRFQLGFS--------------GGRF--TINGTAYE 348
Query: 394 FPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNS 453
P+ +LLQ + G + N LL A SV L N
Sbjct: 349 SPSVPTLLQI----MSGAQSAN--------------------DLLPA---GSVYELPRNQ 381
Query: 454 TVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPV 513
VE+V+ L HP H+HG F V+ + +N VNP +R+ +++ V
Sbjct: 382 VVELVVPAGVLGGP--HPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGV 431
Query: 514 GGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
G V IRF +NPG WF HCH++ HL GLA F +
Sbjct: 432 TGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAED 469
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 213/519 (41%), Gaps = 91/519 (17%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ ++ VN P P I ++GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSL-----LRATVYGALIIRPKSGHE 149
GP + QCPI+ G ++ Y F V +Q GT W+H H+S LR + ++ P+ H+
Sbjct: 78 GPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPI---VVYDPQDPHK 134
Query: 150 YPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQ 209
Y D I L +W++ A G +DA ING + + +
Sbjct: 135 SLYDVDDDSTVITLADWYHL--------AAKVGSPVPTADATLINGLGRSIDTLNAD--- 183
Query: 210 IYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTT 269
+ + V +GK Y R+++ + + F I H TV+ D+ P D + I Q
Sbjct: 184 LAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIFAAQRY 243
Query: 270 DVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTP 329
+L ADQ VG FD I+ YDGAA P P + TP
Sbjct: 244 SFVLNADQDVGNYWIRALPNSGTRN--FDGGVNSAILRYDGAA-------PVEPTTSQTP 294
Query: 330 TAHKFY-SNLTGL--TDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSAS 386
+ + S LT L T P P P VD + + G A G +F +
Sbjct: 295 STNPLVESALTTLEGTAAP-GSPAPGGVDLALNMAFGFA--------------GGKF--T 337
Query: 387 MNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSV 446
+N SF PT LLQ +S S SV
Sbjct: 338 INGASFTPPTVPVLLQI---------------------------LSGAQSAQDLLPSGSV 370
Query: 447 KTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRR 506
+L N+ +EI L TA HP H+HG F V+ + +N NP R
Sbjct: 371 YSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVRSAGSS--------TYNYENPVYR 422
Query: 507 NTIAVPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ ++ G V IRF+ +NPG WF+HCH+D HL G A
Sbjct: 423 DVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/535 (28%), Positives = 217/535 (40%), Gaps = 100/535 (18%)
Query: 32 VKNLTIGR-------LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNIT 79
V +LTI RQ ++ VN P P I ++GD ++V + + +
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSL-----LRA 134
IHWHG FQ + WADGP + QCPI+ G ++ Y F V +Q GT W+H H+S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTIN 194
+ ++ P H Y D I L +W++ A G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWYHL--------AAKVGAPVPTADATLIN 171
Query: 195 GKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTD 254
G + + + + V +GK Y R+++ + + F I H TV+ D+
Sbjct: 172 GLGRSAATLAAD---LAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLK 228
Query: 255 PYVTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASS 314
P+ D + I Q +L ADQ V F T I+ YDGAA
Sbjct: 229 PHTVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN--FAGGTNSAILRYDGAA-- 284
Query: 315 ANPLMPALPAFNDTPTAHKFY-SNLTGL--TDGPHWVPVPRQVDKHMFVTVGLALDRCAA 371
P P + TP+ + S LT L T P P P VD + + G A
Sbjct: 285 -----PVEPTTSQTPSTNPLVESALTTLKGTAAP-GSPTPGGVDLALNMAFGFA------ 332
Query: 372 NATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNV 431
G F ++N SF PT LLQ
Sbjct: 333 --------GGNF--TINGASFTPPTVPVLLQIL------------------------SGA 358
Query: 432 SNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVL-AQGFGNYN 490
+ LL A SV +L N+ +EI L TA HP H+HG F V+ + G YN
Sbjct: 359 QSAADLLPA---GSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSAGSSTYN 415
Query: 491 AARDIKKFNLVNPQRRNTIAVPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
A NP R+ ++ G V IRF+ +NPG WF+HCH+D HL G A
Sbjct: 416 YA---------NPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 155/535 (28%), Positives = 217/535 (40%), Gaps = 100/535 (18%)
Query: 32 VKNLTIGR-------LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNIT 79
V +LTI RQ ++ VN P P I ++GD ++V + + +
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSL-----LRA 134
IHWHG FQ + WADGP + QCPI+ G ++ Y F V +Q GT W+H H+S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTIN 194
+ ++ P H Y D I L +W++ A G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWYHL--------AAKVGAPVPTADATLIN 171
Query: 195 GKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTD 254
G + + + + V +GK Y R+++ + + F I H TV+ D+
Sbjct: 172 GLGRSAATLAAD---LAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLK 228
Query: 255 PYVTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASS 314
P+ D + I Q +L ADQ V F T I+ YDGAA
Sbjct: 229 PHTVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN--FAGGTNSAILRYDGAA-- 284
Query: 315 ANPLMPALPAFNDTPTAHKFY-SNLTGL--TDGPHWVPVPRQVDKHMFVTVGLALDRCAA 371
P P + TP+ + S LT L T P P P VD + + G A
Sbjct: 285 -----PVEPTTSQTPSTNPLVESALTTLKGTAAP-GSPTPGGVDLALNMAFGFA------ 332
Query: 372 NATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNV 431
G F ++N SF PT LLQ
Sbjct: 333 --------GGNF--TINGASFTPPTVPVLLQIL------------------------SGA 358
Query: 432 SNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVL-AQGFGNYN 490
+ LL A SV +L N+ +EI L TA HP H+HG F V+ + G YN
Sbjct: 359 QSAADLLPA---GSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVVRSAGSSTYN 415
Query: 491 AARDIKKFNLVNPQRRNTIAVPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
A NP R+ ++ G V IRF+ +NPG WF+HCH+D HL G A
Sbjct: 416 YA---------NPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 155/523 (29%), Positives = 211/523 (40%), Gaps = 90/523 (17%)
Query: 44 RVITAVNGRLPGPTIRVHEGD--------TLVVHVFNESPYNITIHWHGIFQLLSPWADG 95
R VNG P P I +GD TL H +S +IHWHG FQ + WADG
Sbjct: 22 RDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKS---TSIHWHGFFQAGTNWADG 78
Query: 96 PNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPYP 153
P + QCPI G S+ Y F+V +Q GT W+H H+S + G ++ PK H Y
Sbjct: 79 PAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYD 138
Query: 154 KPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN-QIYK 212
++ I L +W++ A++ P +DA ING L + P +
Sbjct: 139 VDNESTVITLTDWYH-------TAARLGPRFPLGADATLING----LGRSASTPTAALAV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+ V GK Y R+++ + + F I H TV+ VD + P + D + I Q +
Sbjct: 188 INVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAH 332
L A+Q VG + F I+ Y GA A P T +
Sbjct: 248 LNANQTVGNYWIRANPNFGT--VGFAGGINSAILRYQGAPV-------AEPTTTQTTSVI 298
Query: 333 KFY-SNLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNH 390
+NL L P P P VDK + + NG F +NN
Sbjct: 299 PLIETNLHPLARMPVPGSPTPGGVDKALNLAFNF--------------NGTNF--FINNA 342
Query: 391 SFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLK 450
SF PT LLQ + G T LL A SV L
Sbjct: 343 SFTPPTVPVLLQI----LSGAQTAQ--------------------DLLPA---GSVYPLP 375
Query: 451 FNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIA 510
+ST+EI L TAL HP H+HG F V+ +N +P R+ ++
Sbjct: 376 AHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSA--------GSTTYNYNDPIFRDVVS 427
Query: 511 --VPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
P G V IRFQ +NPG WF+HCH+D HL G A F +
Sbjct: 428 TGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAED 470
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 143/514 (27%), Positives = 203/514 (39%), Gaps = 83/514 (16%)
Query: 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWADGPN 97
+R VN P P I + GD +++ N+ +IHWHG FQ + WADGP
Sbjct: 21 ERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPA 80
Query: 98 MITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPYPKP 155
I QCPI G S+ Y F V Q GT W+H H+S + G ++ P H Y
Sbjct: 81 FINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVD 140
Query: 156 DKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN-QIYKLK 214
D+ I L +W++ A++ P +D+ ING L + P + +
Sbjct: 141 DESTVITLADWYHV-------AAKLGPRFPKGADSTLING----LGRSTSTPTADLAVIS 189
Query: 215 VVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLK 274
V +GK Y R+++ + + F I +H+ TV+ D T P D + I Q +L
Sbjct: 190 VTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLN 249
Query: 275 ADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKF 334
A+Q V F + I+ YD A P P N T T
Sbjct: 250 ANQDVDNYWIRANPNFGT--TGFADGVNSAILRYDDAD-------PVEPVTNQTGTTLLL 300
Query: 335 YSNLTGLTDGPHWVPV-PRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQ 393
++L LT P VP P Q + + + D G F +N SF
Sbjct: 301 ETDLHPLTSMP--VPGNPTQGGADLNLNMAFNFD------------GTNF--FINGESFT 344
Query: 394 FPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNS 453
PT LLQ + G NT+ P SV +L NS
Sbjct: 345 PPTVPVLLQI----ISGA----------------------NTAQDLLPS-GSVYSLPSNS 377
Query: 454 TVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAV-- 511
++EI T HP H+HG F V+ +N +P R+ ++
Sbjct: 378 SIEITFPATTAAPGAPHPFHLHGHVFAVVRSAGS--------TSYNYDDPVWRDVVSTGT 429
Query: 512 -PVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLA 544
G IRFQ +NPG WF+HCH+D HL G A
Sbjct: 430 PQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFA 463
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 147/519 (28%), Positives = 213/519 (41%), Gaps = 90/519 (17%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNI-----TIHWHGIFQLLSPWAD 94
R+ V+ VNG P P I ++GD ++V ++ + +IHWHG FQ + WAD
Sbjct: 20 FAREAVV--VNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP + QCPI G S+ Y F V +Q GT W+H H+S + G ++ P H Y
Sbjct: 78 GPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ P SD+ ING P+ +
Sbjct: 138 DIDNDDTVITLADWYHV-------AAKLGPRFPFGSDSTLINGL---GRTTGIAPSDLAV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+KV +GK Y R+++ + + F I NH T++ D+ T P D + I Q +
Sbjct: 188 IKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRG-----IVVYDGAASSANPLMPALPAFND 327
L A QPV F NT G I+ YDGA + P +
Sbjct: 248 LDASQPVDNYWIRANPA-------FGNTGFAGGINSAILRYDGAPE----IEPT--SVQT 294
Query: 328 TPTAHKFYSNLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSAS 386
TPT +L L+ P P P VDK + + NG F
Sbjct: 295 TPTKPLNEVDLHPLSPMPVPGSPEPGGVDKPLNLVFNF--------------NGTNF--F 338
Query: 387 MNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSV 446
+N+H+F P+ LLQ + P+ SV
Sbjct: 339 INDHTFVPPSVPVLLQIL--------------------------SGAQAAQDLVPE-GSV 371
Query: 447 KTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRR 506
L NS++EI TA HP H+HG F V+ + +N NP R
Sbjct: 372 FVLPSNSSIEISFPATANAPGFPHPFHLHGHAFAVVRSAGSSV--------YNYDNPIFR 423
Query: 507 NTIAVPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ ++ G V IRF+ NNPG WF+HCH+D HL G A
Sbjct: 424 DVVSTGQPGDNVTIRFETNNPGPWFLHCHIDFHLDAGFA 462
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 147/518 (28%), Positives = 211/518 (40%), Gaps = 86/518 (16%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ V+ VNG PGP + + GD ++V + ++HWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP I QCPI+PG S+ Y F V NQ GT W+H H+S + G ++ P H Y
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ PN +D+ INGK S + Q+
Sbjct: 138 DVDNDDTTITLADWYHT-------AAKLGPAFPNGADSTLINGKG---RAPSDSSAQLSV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+ V +GK R+++ + + F I H T++ D+ + P TD + I Q
Sbjct: 188 VSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFT 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPAL-PAFNDTPTA 331
L A+Q V + F+ I+ YDGA PA+ P N + +
Sbjct: 248 LNANQAVDNYWIRANPNFG--NVGFNGGINSAILRYDGA--------PAVEPTTNQSTST 297
Query: 332 HKF-YSNLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNN 389
+NL L P P VDK + + NG F +N
Sbjct: 298 QPLNETNLHPLVSTPVPGSPAAGGVDKAINMAFNF--------------NGSNF--FING 341
Query: 390 HSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTL 449
SF P+ LLQ T+ P SV TL
Sbjct: 342 ASFTPPSVPVLLQIL--------------------------SGAQTAQDLLPS-GSVXTL 374
Query: 450 KFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTI 509
N+++EI TA HP H+HG F V+ + +N NP R+ +
Sbjct: 375 PSNASIEISFPATAAAPGAPHPFHLHGHVFAVV--------RSAGSTVYNYSNPIFRDVV 426
Query: 510 A--VPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 427 STGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 149/518 (28%), Positives = 213/518 (41%), Gaps = 86/518 (16%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ V+ VNG PGP + + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP I QCPI+PG S+ Y F V +Q GT W+H H+S + G ++ P H Y
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ P +DA INGK S + ++
Sbjct: 138 DVDNDDTVITLADWYHT-------AAKLGPRFPGGADATLINGKG---RAPSDSVAELSV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+KV +GK Y R+++ + N F I H T++ VD+ + P D + I Q +
Sbjct: 188 IKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPAL-PAFNDTPTA 331
L A+Q V + FD I+ YDGA PA+ P N T +
Sbjct: 248 LDANQAVDNYWIRANPNFG--NVGFDGGINSAILRYDGA--------PAVEPTTNQTTSV 297
Query: 332 HKFYS-NLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNN 389
+L L P P VDK + + NG F +N
Sbjct: 298 KPLNEVDLHPLVSTPVPGAPSSGGVDKAINMAFNF--------------NGSNF--FING 341
Query: 390 HSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTL 449
SF PT LLQ L T ++ + S+ P
Sbjct: 342 ASFVPPTVPVLLQI------------------LSGAQTAQDLLPSGSVYVLPS------- 376
Query: 450 KFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTI 509
N+++EI TA HP H+HG F V+ +N NP R+ +
Sbjct: 377 --NASIEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV--------YNYDNPIFRDVV 426
Query: 510 A--VPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 427 STGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 142/531 (26%), Positives = 212/531 (39%), Gaps = 77/531 (14%)
Query: 29 SFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNE-----SPYNITIHWH 83
H+ N I R G PGP I + GD + FN+ + +IHWH
Sbjct: 8 DLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWH 67
Query: 84 GIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII 142
G FQ + WADGP ITQCPI G S++Y FNV GT W+H H++ + G ++
Sbjct: 68 GEFQKGTNWADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVV 127
Query: 143 -RPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLY 201
P Y D I L +W++ ++ IT +D+ I+G
Sbjct: 128 YDPNDPDANLYDVDDDTTIITLADWYHVLAKEMGAGGAIT------ADSTLIDGLGRTHV 181
Query: 202 PCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVV 261
+ P + ++V GK Y +R+++ + + F I H T++ D + D +
Sbjct: 182 NVAAVPLSVITVEV--GKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEI 239
Query: 262 VIAPGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPA 321
I Q +L A+QPVG FD I+ YDG A++A+P+ A
Sbjct: 240 QIFAAQRYSFVLNANQPVGNYWIRANPNSGGEG--FDGGINSAILRYDG-ATTADPVTVA 296
Query: 322 LPAFNDTPTAHKFYS-NLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNG 380
+ + G+ PH D ++ +++G A N
Sbjct: 297 STVHTKCLIETDLHPLSRNGVPGNPH----QGGADCNLNLSLGFACGNFVINGV------ 346
Query: 381 QRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFA 440
SF PT LLQ NT+
Sbjct: 347 ----------SFTPPTVPVLLQIC--------------------------SGANTAADLL 370
Query: 441 PKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNL 500
P SV +L NST+EI L A A HP H+HG DF V + +A+ ++
Sbjct: 371 PS-GSVISLPSNSTIEIALPAGA--AGGPHPFHLHGHDFAV------SESASNSTSNYD- 420
Query: 501 VNPQRRNTIAV-PVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
+P R+ +++ VG IRF +NPG WF+HCH+D HL G A F +
Sbjct: 421 -DPIWRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAED 470
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 149/518 (28%), Positives = 211/518 (40%), Gaps = 86/518 (16%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ V+ VNG PGP + + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP I QCPI+PG S+ Y F V +Q GT W+H H+S + G ++ P H Y
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ P +DA INGK S + ++
Sbjct: 138 DVDNDDTVITLADWYHT-------AAKLGPRFPGGADATLINGKG---RAPSDSVAELSV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+KV +GK Y R+++ + N F I H T++ VD+ + P D + I Q +
Sbjct: 188 IKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPAL-PAFNDTPTA 331
L A+Q V + FD I+ YDGA PA+ P N T +
Sbjct: 248 LDANQAVDNYWIRANPNFG--NVGFDGGINSAILRYDGA--------PAVEPTTNQTTSV 297
Query: 332 HKFYS-NLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNN 389
+L L P P VDK + + NG F +N
Sbjct: 298 KPLNEVDLHPLVSTPVPGSPSSGGVDKAINMAFNF--------------NGSNF--FING 341
Query: 390 HSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTL 449
SF PT LLQ L T ++ + S+ P S
Sbjct: 342 ASFVPPTVPVLLQI------------------LSGAQTAQDLLPSGSVYVLPSNAS---- 379
Query: 450 KFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTI 509
+EI TA HP H+HG F V+ +N NP R+ +
Sbjct: 380 -----IEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV--------YNYDNPIFRDVV 426
Query: 510 A--VPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 427 STGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 147/525 (28%), Positives = 220/525 (41%), Gaps = 79/525 (15%)
Query: 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGIFQLLSPWADGPNMITQ 101
+ V+ VN ++ GPTIR + GD + V V N N T +HWHG+ QL + + DG N +T+
Sbjct: 95 KNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTE 154
Query: 102 CPITP-GRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSGHEYPYPKPDKEV 159
CPI P G TYKF Q GT W+H H S V G + I + PY
Sbjct: 155 CPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPA--SLPYDIDLGVF 211
Query: 160 PILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGK 219
P++ +++ + ++ + Q G P SD NG +P Q Y + + GK
Sbjct: 212 PLM--DYYYRSADELVHFTQSNGAPP--SDNVLFNGTA--RHP-ETGAGQWYNVTLTPGK 264
Query: 220 TYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPV 279
+ LRIIN + +N + H TV++ D + + + +A GQ DV + A+ PV
Sbjct: 265 RHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPV 324
Query: 280 GXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFYSNLT 339
G + DG S+N N P A Y
Sbjct: 325 GNYWF-------------------NVTFGDGLCGSSN---------NKFPAAIFRYQGAP 356
Query: 340 GLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLS 399
+PVP HM C N P R SA +NN + +L
Sbjct: 357 ATLPTDQGLPVP----NHM----------CLDNLNLT-PVVTR-SAPVNNFVKRPSNTLG 400
Query: 400 LLQAFFFNVGGIYTPNF---PNNPPLKFDYTNP----NVSNNTSLLFAPKLTSVKTLKFN 452
+ ++GG TP F N + D+ P +S NTS + + V +
Sbjct: 401 VT----LDIGG--TPLFVWKVNGSAINVDWGKPILDYVMSGNTSYPVSDNIVQVDAVDQW 454
Query: 453 STVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGN---------YNAARDIKKFNLVNP 503
+ I T I HP+H+HG DF VL + ++ A+D+ + NP
Sbjct: 455 TYWLIENDPTNPIVSLPHPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNP 514
Query: 504 QRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFV 548
RR+ +P GGW ++ F+ +NPG W HCH+ H+ GL+ F+
Sbjct: 515 VRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 147/518 (28%), Positives = 209/518 (40%), Gaps = 86/518 (16%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ V+ VNG PGP + + GD ++V + ++HWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP I QCPI+PG S+ Y F V NQ GT W+H H+S + G ++ P H Y
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ P +DA INGK S ++
Sbjct: 138 DVDNDDTVITLADWYHT-------AAKLGPRFPAGADATLINGKG---RAPSDTSAELSV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+KV +GK R+++ + + F I H T++ VD+S + P D + I Q +
Sbjct: 188 IKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASSANPLMPAL-PAFNDTPTA 331
L A+Q V + F+ I+ YDGA PA+ P N T +
Sbjct: 248 LNANQAVDNYWIRANPNFG--NVGFNGGINSAILRYDGA--------PAVEPTTNQTTSV 297
Query: 332 HKFYS-NLTGLTDGP-HWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNN 389
NL L P P VDK + + NG F +N
Sbjct: 298 KPLNEVNLHPLVSTPVPGSPSSGGVDKAINMAFNF--------------NGSNF--FING 341
Query: 390 HSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTL 449
SF P+ LLQ L T ++ + S+ P S
Sbjct: 342 ASFVPPSVPVLLQI------------------LSGAQTAQDLLPSGSVXVLPSNAS---- 379
Query: 450 KFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTI 509
+EI TA HP H+HG F V+ +N NP R+ +
Sbjct: 380 -----IEISFPATAAAPGAPHPFHLHGHTFAVVRSAGSTV--------YNYSNPIFRDVV 426
Query: 510 A--VPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLA 544
+ P G V IRF NNPG WF+HCH+D HL G A
Sbjct: 427 STGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 158/560 (28%), Positives = 229/560 (40%), Gaps = 90/560 (16%)
Query: 9 AFAS----VLIVSSTLASAAIVEHSFHVKNLTI---GRLCRQRVITAVNGRLPGPTIRVH 61
+FAS V++ ++L+ AA V H+ N + G R V G P I +
Sbjct: 3 SFASLKSLVVLSLTSLSLAATVALDLHILNANLDPDGTGARSAV--TAEGTTIAPLITGN 60
Query: 62 EGDTLVVHVFNE-SPYNI----TIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNV 116
D ++V ++ + N+ +IHWHG FQ + DGP + QCPI P S+ Y F V
Sbjct: 61 IDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVV 120
Query: 117 INQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPYPKPDKEVPILLGEWWNANVVDV 174
Q GT W+H H+S + GA ++ P H Y D I + +W+++ +
Sbjct: 121 PGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVL 180
Query: 175 ENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN--QIYKLKVVEGKTYLLRIINAALNN 232
D ING L S NP+ Q+ + V GK Y RI++ +
Sbjct: 181 FPNPNKAP---PAPDTTLING----LGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFP 233
Query: 233 QLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGXXXXXXXXXXXX 292
F I H+ TV+ VD P D + I GQ V+++A+Q VG
Sbjct: 234 NYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQAVGNYWIRANPSNG- 292
Query: 293 PQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFYSNLTGLTD-GPHWVPVP 351
+ F I Y GAA A P + +NL L + G PVP
Sbjct: 293 -RNGFTGGINSAIFRYQGAAV-------AEPTTSQNSGTALNEANLIPLINPGAPGNPVP 344
Query: 352 RQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGI 411
D ++ + +G NAT ++N F PT LLQ + G+
Sbjct: 345 GGADINLNLRIG-------RNATTA-------DFTINGAPFIPPTVPVLLQI----LSGV 386
Query: 412 YTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHP 471
TNPN LL +V +L N +EI + NHP
Sbjct: 387 ---------------TNPN-----DLLPG---GAVISLPANQVIEISIPGGG-----NHP 418
Query: 472 IHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAV-IRFQANNPGVWF 530
H+HG +F V+ +N VNP RR+ +++ GG V RF +NPG WF
Sbjct: 419 FHLHGHNFDVV--------RTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWF 470
Query: 531 VHCHLDVHLPWGLATAFVVE 550
+HCH+D HL GLA F +
Sbjct: 471 LHCHIDWHLEAGLAVVFAED 490
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 27 EHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGI 85
E+ V+N TI R NG +PGP I GD L++HV N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRP 144
QL S DG +TQCPI PG + TYKF V Q GT W+H H SL ++G LII
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQV-TQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 KSGHEYPYPKPDKEVP-ILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPC 203
+ +Y D++V I L +W + +V ++ + A++ GAP + +NG
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL--GAPPALENTLMNGTNTFDCSA 240
Query: 204 SQNPNQI-----YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVT 258
S +PN + ++L VEG Y LR+IN +++ F I NH TV++ D PY T
Sbjct: 241 STDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTT 300
Query: 259 DVVVIAPGQTTDVLLKAD 276
D ++I GQ DV+++A+
Sbjct: 301 DTLLIGIGQRYDVIVEAN 318
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%)
Query: 470 HPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVW 529
HPIH+HG DF ++AQ +N+ KFNLVNP RR+ A+P G+ I F+ +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 530 FVHCHLDVHLPWGLATAFV 548
+HCH+ H GLA FV
Sbjct: 523 LLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/258 (37%), Positives = 138/258 (53%), Gaps = 16/258 (6%)
Query: 27 EHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGI 85
E+ V+N TI R NG +PGP I GD L++HV N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRP 144
QL S DG +TQCPI PG + TYKF V Q GT W+H H SL ++G LII
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQV-TQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 KSGHEYPYPKPDKEVP-ILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPC 203
+ +Y D++V I L +W + +V ++ + A++ GAP + +NG
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL--GAPPALENTLMNGTNTFDCSA 240
Query: 204 SQNPNQI-----YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVT 258
S +PN + ++L VEG Y LR+IN +++ F I NH TV++ D PY T
Sbjct: 241 STDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTT 300
Query: 259 DVVVIAPGQTTDVLLKAD 276
D ++I GQ DV+++A+
Sbjct: 301 DTLLIGIGQRYDVIVEAN 318
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%)
Query: 470 HPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVW 529
HPIH+HG DF ++AQ +N+ KFNLVNP RR+ A+P G+ I F+ +NPG W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 530 FVHCHLDVHLPWGLATAFV 548
+HCH+ H G+A FV
Sbjct: 523 LLHCHIAWHASEGMAMQFV 541
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 142/517 (27%), Positives = 219/517 (42%), Gaps = 88/517 (17%)
Query: 42 RQRVITAVNGRLPGPTIRVHEGDTLVVHVFN-ESPYNITIHWHGIFQLLSPWADGPNMIT 100
+ R + NG+ P P I V++GD + +++ N + N ++H+HG+FQ + DG +T
Sbjct: 20 KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT 79
Query: 101 QCPITPGRSYTYKFNVINQEGTLWWHGHVS-LLRATVYGALIIRPKSGHEYPYPKPDKEV 159
QCPI PG + Y F V GT W+H H + G II+ S +PY D+E+
Sbjct: 80 QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS---FPYDY-DEEL 135
Query: 160 PILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQN--PNQIYKL--KV 215
+ L EW++ V D ++ ++ P P QN N L +V
Sbjct: 136 SLSLSEWYHDLVTD-------------LTKSFMSVYNPTGAEPIPQNLIVNNTMNLTWEV 182
Query: 216 VEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLL-- 273
TYLLRI+N +F I +H+ TVV +D T+ VTD++ I Q VL+
Sbjct: 183 QPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLVHT 242
Query: 274 KADQPVGXXXXXXXXXXXXPQIPFD-NTTTRGIVVYDGAASSANPLMPALPAFNDTPTAH 332
K D IP D +VY+ A ALP N
Sbjct: 243 KNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTA--------ALPTQN------ 288
Query: 333 KFYSNLTGLTDGPHWVPVPRQV---DKHMFVTVGLALDRCAANATCQGPNGQRFSASMNN 389
+ ++ D + P ++ + +TV + +D NG +
Sbjct: 289 -YVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVVMDNLK--------NGVNY------ 333
Query: 390 HSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTL 449
AFF N+ YT P P L ++ + +NN+ + + T + L
Sbjct: 334 -------------AFFNNI--TYTA--PKVPTLMTVLSSGDQANNSEIYGSNTHTFI--L 374
Query: 450 KFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDI-KKFNLVN------ 502
+ + VEIVL N HP H+HG F + + +A ++ F+ N
Sbjct: 375 EKDEIVEIVLNNQ---DTGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDNHPAFPE 431
Query: 503 -PQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVH 538
P RR+T+ V VIRF+A+NPGVWF HCH++ H
Sbjct: 432 YPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 21/281 (7%)
Query: 40 LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWAD 94
RQ V+ VNG PGP I + GD ++V + + +IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWAD 77
Query: 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPY 152
GP I QCPI+ G S+ Y F V +Q GT W+H H+S + G ++ P Y
Sbjct: 78 GPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLY 137
Query: 153 PKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212
+ + I L +W++ A++ P +DA INGK S +
Sbjct: 138 DVDNDDTVITLVDWYHV-------AAKLGPAFPLGADATLINGKG---RSPSTTTADLSV 187
Query: 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVL 272
+ V GK Y R+++ + + F I H T++ D+ T P V D + I Q +
Sbjct: 188 ISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFV 247
Query: 273 LKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAAS 313
L+A+Q V + F I+ YDGAA+
Sbjct: 248 LEANQAVDNYWIRANPNFG--NVGFTGGINSAILRYDGAAA 286
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Query: 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQ 504
SV +L N+ +EI TA HP H+HG F V+ +N NP
Sbjct: 370 SVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVRSAGSTV--------YNYDNPI 421
Query: 505 RRNTIAV--PVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
R+ ++ P G V IRF+ +NPG WF+HCH+D HL G A F +
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAED 470
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 17/243 (6%)
Query: 44 RVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIFQLLSPWADGPNM 98
R NG PGP I ++GD ++V + TIHWHG+FQ + WADGP
Sbjct: 22 RAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAF 81
Query: 99 ITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RPKSGHEYPYPKPD 156
+ QCPI G S+ Y F V +Q GT W+H H+S + G L++ P + Y D
Sbjct: 82 VNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYASMYDVDD 141
Query: 157 KEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVV 216
I L +W++ A++ P +D+ ING G N + + + V
Sbjct: 142 DTTVITLSDWYHT-------AAKLGPAFPPNADSVLINGL-GRF--AGGNASDLAVITVE 191
Query: 217 EGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKAD 276
+ K Y R+++ + + F I H T++ VD +P D + I Q +L A
Sbjct: 192 QNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFVLNAT 251
Query: 277 QPV 279
Q V
Sbjct: 252 QSV 254
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 14/112 (12%)
Query: 445 SVKTLKFNSTVEIVLQNTALIAVEN-----HPIHIHGFDFHVLAQGFGNYNAARDIKKFN 499
SV TL NST+E+ T + V N HP H+HG F V+ +N
Sbjct: 370 SVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVRSAGS--------SDYN 421
Query: 500 LVNPQRRNTIAVPVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
VNP RR+T++ G V IRF +N G WF+HCH+D HL G A F +
Sbjct: 422 YVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAED 473
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 122/291 (41%), Gaps = 21/291 (7%)
Query: 32 VKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-----YNITIHWHGIF 86
V N + R VNG PGP I ++GD ++V N + ++HWHG F
Sbjct: 10 VTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFF 69
Query: 87 QLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALII-RP 144
Q + WADGP + QCPI G S+ Y F+ Q GT W+H H+S G ++ P
Sbjct: 70 QKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDP 129
Query: 145 KSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKP-GDLYPC 203
Y + I L +W+ AQ P +DA ING+ G P
Sbjct: 130 NDPSANLYDVDNLNTVITLTDWY-------HTAAQNGPAKPGGADATLINGQGRGPSSPS 182
Query: 204 SQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVI 263
+ + + V GK Y R+++ + + F I H+ T++ VD+ P V + I
Sbjct: 183 A----DLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQI 238
Query: 264 APGQTTDVLLKADQPVGXXXXXXXXXXXXPQIPFDNTTTRGIVVYDGAASS 314
Q +L A+Q V + F N I+ Y GAA++
Sbjct: 239 YAAQRYSFILNANQAVNNYWIRANPNQG--NVGFTNGINSAILRYSGAAAT 287
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 446 VKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQR 505
V +L ++ +EI T+ A HP H+HG F V+ + +N +P
Sbjct: 371 VYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVVR--------SAGSTTYNYNDPIF 422
Query: 506 RNTIAV--PVGGWAV-IRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550
R+T++ P V IRF+ NNPG WF+HCH+D HL G A F +
Sbjct: 423 RDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVFAQD 470
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 117/237 (49%), Gaps = 23/237 (9%)
Query: 48 AVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG 107
A NG++P P I V EGD + V+V N + TIHWHG+ Q + +DG TQ I PG
Sbjct: 26 AFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPG 85
Query: 108 RSYTYKFNVINQEGTLWWHGHVSL-----LRATVYGALIIRPKSGHEYPYPKPDKEVPIL 162
++TYKF GT+W+H HV++ +R ++G LI+ PK+ P K + IL
Sbjct: 86 DTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRG-MWGPLIVEPKN--PLPIEKTVTKDYIL 141
Query: 163 LGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYL 222
+ W ++ + + I G ++ D YTIN K +P +Q ++V +G
Sbjct: 142 MLSDWVSSWANKPGEGGIPG---DVFDYYTINAKS---FPETQ------PIRVKKGDVIR 189
Query: 223 LRIINAALNNQLFFKIANHKFTVVSVDASYTD-PYVTDVVVIAPGQTTDVLLKADQP 278
LR+I A ++ H + D D P D V+I PG+ DV+L D P
Sbjct: 190 LRLIGAG-DHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNP 245
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 470 HPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVW 529
H IH HG H+ F + F L P + +T+ + G + +NPG+W
Sbjct: 200 HAIHTHG---HISQIAFKD--------GFPLDKPIKGDTVLIGPGERYDVILNMDNPGLW 248
Query: 530 FVHCHLDVH 538
+H H+D H
Sbjct: 249 MIHDHVDTH 257
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 21/242 (8%)
Query: 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGIFQLLSPWADGPNMITQ 101
+ + +NG + GP I + GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPITP-GRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSGHEYPYPKPDKEV 159
CPI P G TY++ Q GT W+H H S V G + I + PY
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN----QIYKLKV 215
PI +++ D+ + Q AP SD ING + NPN Q + +
Sbjct: 171 PIT--DYYYRAADDLVHFTQ--NNAPPFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 216 VEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275
GK + LRI+N + N + NH TV++ D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 276 DQ 277
+
Sbjct: 280 SR 281
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 470 HPIHIHGFDFHVL---------AQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIR 520
HP+H+HG DF VL +Q ++ A D+ + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 521 FQANNPGVWFVHCHLDVHLPWGLATAFV 548
F+ +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 21/242 (8%)
Query: 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGIFQLLSPWADGPNMITQ 101
+ + +NG + GP I + GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPITP-GRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSGHEYPYPKPDKEV 159
CPI P G TY++ Q GT W+H H S V G + I + PY
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN----QIYKLKV 215
PI +++ D+ + Q AP SD ING + NPN Q + +
Sbjct: 171 PIT--DYYYRAADDLVHFTQ--NNAPPFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 216 VEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275
GK + LRI+N + N + NH TV++ D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 276 DQ 277
+
Sbjct: 280 SR 281
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 470 HPIHIHGFDFHVL---------AQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIR 520
HP+H+HG DF VL +Q ++ A D+ + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 521 FQANNPGVWFVHCHLDVHLPWGLATAFV 548
F+ +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 111/242 (45%), Gaps = 21/242 (8%)
Query: 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNIT-IHWHGIFQLLSPWADGPNMITQ 101
+ + +NG + GP I + GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTE 113
Query: 102 CPITP-GRSYTYKFNVINQEGTLWWHGHVSLLRAT-VYGALIIRPKSGHEYPYPKPDKEV 159
CPI P G TY++ Q GT W+H H S V G + I + PY
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPA--SLPYDIDLGVF 170
Query: 160 PILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPN----QIYKLKV 215
PI +++ D+ + Q AP SD ING + NPN Q + +
Sbjct: 171 PIT--DYYYRAADDLVHFTQ--NNAPPFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 216 VEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275
GK + LRI+N + N + NH TV++ D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 276 DQ 277
+
Sbjct: 280 SR 281
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 470 HPIHIHGFDFHVL---------AQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIR 520
HP+H+HG DF VL +Q ++ A D+ + N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 521 FQANNPGVWFVHCHLDVHLPWGLATAFV 548
F+ +NPG W HCH+ H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
G PGPT+RV DT+ + + N P +HWHG+ +SP D P + I PG S
Sbjct: 41 GGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL--PISPKVDDPFL----EIPPGES 94
Query: 110 YTYKFNVINQ-EGTLWWHGHV-----SLLRATVYGALIIRPKSGHEYPYPKPDKEVPILL 163
+TY+F V + GT W+H H+ L A + GAL++ S P + +E ++L
Sbjct: 95 WTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVE-SSLDAIPELREAEEHLLVL 153
Query: 164 GEWWNANVVDVENQAQITGGAPNISDAYT-INGKPGDLYPCSQNPNQIYKLKVVEGKTYL 222
+ GG P +NGK GDL + + V + T
Sbjct: 154 ------------KDLALQGGRPAPHTPMDWMNGKEGDLVLVN---GALRPTLVAQKATLR 198
Query: 223 LRIINAALNNQLFFKIA--NHKFTVVSVDASY-TDPYVTDVVVIAPGQTTDVLLK 274
LR++NA +N ++++A +H +++ D + +P +++APG+ +VL++
Sbjct: 199 LRLLNA--SNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVR 251
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 47/231 (20%)
Query: 11 ASVLIVSSTLASAAIVEHSFHVKNLTI--GRLCRQRVITAV-----------------NG 51
SVL + + AI+ + T+ GR R+ I AV NG
Sbjct: 2 GSVLAERAGIDPTAILRDFDRGRTSTLPDGRTLREWDIVAVDKDFEIAPGIIFKGWSYNG 61
Query: 52 RLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYT 111
R+PGPT+ EGD L +H N + TIH+HG+ + DG I I PG+S+T
Sbjct: 62 RIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRAT---MDGTPGIGAGSIAPGQSFT 118
Query: 112 YKFNVINQEGTLWWHGHVSLLRATV----YGALIIRPKSGHEYPYPKPDKEVPILLGEWW 167
Y+F+ GT +H H S L + YG I+ PK G P D E
Sbjct: 119 YEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGR----PPADDE--------- 164
Query: 168 NANVVDVENQAQITGGAPNISDAYTINGKPGDL--YPCSQNPNQIYKLKVV 216
+V V N GG N + Y++NG P +P +++ ++ ++
Sbjct: 165 ---MVMVMNGYNTDGGDDN--EFYSVNGLPFHFMDFPVKVKQHELVRIHLI 210
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 30/241 (12%)
Query: 42 RQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQ 101
++ + NG +P P I V EGD L + V N+ TIHWHG+ + P DG
Sbjct: 68 KKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGV--PVPPDQDGS---PH 122
Query: 102 CPITPGRSYTYKFNV-INQEGTLWWHGHVSLLRAT-----VYGALIIRPKSGHEYPYPKP 155
PI G Y+F + + GT W+H H + + GA +I+ K
Sbjct: 123 DPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL--- 179
Query: 156 DKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKV 215
KE +++ + + ++ AQI PN + +NG+ G+ N +K K+
Sbjct: 180 -KEKDLMISD------LRLDENAQI----PNNNLNDWLNGREGEFVLI----NGQFKPKI 224
Query: 216 VEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYV-TDVVVIAPGQTTDVLLK 274
+RI NA L +I KF +V D + + + + ++P +VL+
Sbjct: 225 KLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLID 284
Query: 275 A 275
A
Sbjct: 285 A 285
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 469 NHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGV 528
+HP HIHG F +++ + + R+TI V +R + + G+
Sbjct: 406 DHPFHIHGTQFELISSKLNGKVQKAEFRAL-------RDTINVRPNEELRLRMKQDFKGL 458
Query: 529 WFVHCHLDVHLPWGLATAFVVEN 551
HCH+ H G+ V+
Sbjct: 459 RMYHCHILEHEDLGMMGNLEVKE 481
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 32/236 (13%)
Query: 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFN 115
PTI + G + + + N+ +HWHG F + W + + ITPG SY Y F+
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG-FDV--NWHNDAH--PSFAITPGESYNYSFD 92
Query: 116 VINQEGTLWWHGHVSLLRATVYG----ALIIRPKSGHEYPYPKPDKEVPILLGEWWNANV 171
V+N+ GT +H H L A + L+I SG + + ++P+++ +
Sbjct: 93 VVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISD------ 146
Query: 172 VDVENQAQITGGAP--NISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAA 229
+ GGAP N + I G G+ + + ++KL G +Y LR++N +
Sbjct: 147 ------RRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFKLS---GGSYRLRLVNGS 197
Query: 230 LNNQLFFKIANHKFTVV-----SVDASY-TDPYVTDVVVIAPGQTTDVLLKADQPV 279
I VV +VD + P + +AP + +V+++ + V
Sbjct: 198 NARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGEGV 253
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 110/527 (20%), Positives = 193/527 (36%), Gaps = 101/527 (19%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGHV-----SLLRATVYGALIIRPKSGHEYPYPKP--DKEVPIL 162
+ NV T W+H H + + G ++I + PK +VP++
Sbjct: 97 RSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVI 156
Query: 163 LGEWWNANVVDVENQAQITGGAPN-ISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTY 221
+ + + ++ Q + A D NG +YP P +L+++ G
Sbjct: 157 VQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGA---IYPQHAAPRGWLRLRLLNGCNA 213
Query: 222 LLRIINAALNNQLFFKIANHKFTVVSVDASYT-DPYVTDVVVIAPGQTTDVLLKADQPVG 280
R +N A ++ N V++ D +P + + G+ +VL++ +
Sbjct: 214 --RSLNFATSD-------NRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVND--- 261
Query: 281 XXXXXXXXXXXXPQIPFDNTT------TRGIVVYDGAASSANPLMPALP-------AFND 327
PFD T I +D +P+M P A D
Sbjct: 262 -------------NKPFDLVTLPVSQMGMAIAPFD----KPHPVMRIQPIAISASGALPD 304
Query: 328 TPTAHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASM 387
T ++ +L GLT + + +++ +LD + + + G + A M
Sbjct: 305 TLSSLPALPSLEGLT------------VRKLQLSMDPSLDSSGSQSLSE-KYGDQAMAGM 351
Query: 388 NNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVK 447
+HS Q + N GG KFD+ + N N + + +
Sbjct: 352 -DHS-QMMGHMGHGNMNHMNHGG------------KFDFHHANKINGQAFDMNKPMFAAA 397
Query: 448 TLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRN 507
++ V + + L HP HIHG F +L++ G AA + V + N
Sbjct: 398 KGQYERWVISGVGDMML-----HPFHIHGTQFRILSEN-GKPPAAHRAGWKDTVKVE-GN 450
Query: 508 TIAVPVGGWAVIRFQANNPG--VWFVHCHLDVHLPWGLATAFVVENG 552
V +++F + P + HCHL H G+ F V G
Sbjct: 451 VSEV------LVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTVLQG 491
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 470 HPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPG-- 527
HP HIHG F +L++ G AA + V + N V +++F + P
Sbjct: 367 HPFHIHGTQFRILSEN-GKPPAAHRAGWKDTVKVE-GNVSEV------LVKFNHDAPKEH 418
Query: 528 VWFVHCHLDVHLPWGLATAFVV 549
+ HCHL H G+ F V
Sbjct: 419 AYMAHCHLLEHEDTGMMLGFTV 440
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG L GP +++ G + V ++N+ T+HWHG+ ++ GP I I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI----IPPGGK 96
Query: 110 YTYKFNVINQEGTLWWHGH 128
+ NV T W+H H
Sbjct: 97 RSVTLNVDQPAATCWFHPH 115
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 22/126 (17%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNES----PYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
+G +PG IRV EGDT+ V N P+N+ H +
Sbjct: 64 DGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGA---------AATFTA 114
Query: 106 PGRSYTYKFNVINQEGTLWWHGHVSLLRATV----YGALIIRPKSGHEYPYPKPDKEVPI 161
PGR+ T+ F + Q G +H V+ + + YG +++ PK G PK DKE I
Sbjct: 115 PGRTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYI 169
Query: 162 LLGEWW 167
+ G+++
Sbjct: 170 VQGDFY 175
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFN---------VINQEG 121
N P+N+ H + A G +T + PG T +F V EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYVCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 25 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 84
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVS 130
N P+N+ H + A G +T + PG T +F ++ GT +H
Sbjct: 85 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKA-DRSGTFVYH---C 131
Query: 131 LLRATVYGALIIRPKSGHEYPYPKP 155
+ G L++ P+ G + P KP
Sbjct: 132 TPHPFMSGTLMVLPRDGLKDPQGKP 156
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHAAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 25 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 84
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 85 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 135
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 136 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 164
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 41 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 94
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 95 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 137
Query: 540 PW 541
PW
Sbjct: 138 PW 139
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVNFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 30 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 89
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 90 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 140
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 141 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 169
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 46 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 99
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 100 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 142
Query: 540 PW 541
PW
Sbjct: 143 PW 144
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 23 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 82
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 83 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 133
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 134 MVPWH-----VVSGLSGTLMVLPRDGLKDPQGKP 162
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 40/134 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 39 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 92
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 93 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 135
Query: 540 PW----GLATAFVV 549
PW GL+ +V
Sbjct: 136 PWHVVSGLSGTLMV 149
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVEFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGLSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 40/134 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW----GLATAFVV 549
PW GL+ +V
Sbjct: 137 PWHVVSGLSGTLMV 150
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWH---- 126
N P+N+ H + A G +T + PG T +F ++ GT +H
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKA-DRSGTFVYHCAPE 133
Query: 127 GHV-SLLRATVYGALIIRPKSGHEYPYPKP 155
G V + + + G L++ P+ G + P KP
Sbjct: 134 GMVPHHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGASGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 27/119 (22%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
NG +PGPT+ VHEGD TLV N P+N+ H + A G +T +
Sbjct: 59 NGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAKLTN--VN 109
Query: 106 PGRSYTYKFNVINQ---------EGTLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
PG T +F EG + WH + + + G L++ P+ G + P KP
Sbjct: 110 PGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVSGLSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 40/134 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW----GLATAFVV 549
PW GL+ +V
Sbjct: 137 PWHVVSGLSGTLMV 150
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 25/239 (10%)
Query: 46 ITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQ--LLSPWADGPNMITQCP 103
+ +G PGPT +V G VV N + ++H HG F WA+ IT+
Sbjct: 59 LVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWAED---ITE-- 113
Query: 104 ITPGRSYTYKFNVINQEGTLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKPDKEVPILL 163
PG Y + TLW+H H + A R ++G Y P ++ L
Sbjct: 114 --PGSFKDYYYPNRQSARTLWYHDHAMHITAEN----AYRGQAGL-YMLTDPAEDALNLP 166
Query: 164 GEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLL 223
+ ++ + Q T ++ +N GD+ + P + K VE + Y
Sbjct: 167 SGYGEFDIPMILTSKQYTANGNLVTTNGELNSFWGDVIHVNGQP---WPFKNVEPRKYRF 223
Query: 224 RIINAALNNQLFFKIANHK-------FTVVSVDASYTD-PYVTDVVVIAPGQTTDVLLK 274
R ++AA++ A+ F V++ D+ + P T ++ I+ + +V+
Sbjct: 224 RFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMAERYEVVFD 282
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 470 HPIHIHGFDFHVLAQGFGNYNAARDIKKF-----NLVNPQRRNTIAVPVGGWAVIRFQAN 524
HPIHIH DF V+++ G N AR + + ++V RR T+ V A
Sbjct: 398 HPIHIHLVDFKVISRTSG--NNARTVMPYESGLKDVVWLGRRETVVVEA-------HYAP 448
Query: 525 NPGVWFVHCHLDVHLPWGLATAF 547
PGV+ HCH +H + AF
Sbjct: 449 FPGVYMFHCHNLIHEDHDMMAAF 471
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+N+ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGQSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 11 ASVLIVSSTLASAAIVEH-SFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVH 69
A+ I + T + V H + + L G++ +PGP I V+EGDTL +
Sbjct: 33 AAKGITARTAPAGGEVRHLKMYAEKLADGQMGYG--FEKGKASVPGPLIEVNEGDTLHIE 90
Query: 70 VFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG--RSYTYKFNVINQ--EGTL-- 123
N ++H HG+ +S +DG M + + PG R+YT++ + + +GT
Sbjct: 91 FTNTMDVRASLHVHGLDYEIS--SDGTAM-NKSDVEPGGTRTYTWRTHKPGRRDDGTWRP 147
Query: 124 ----WWHGH---------VSLLRATVYGALIIRPKS 146
+WH H +R +YG +I+R K
Sbjct: 148 GSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 183
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ +I + G W HCH+ H G+ F+V+
Sbjct: 270 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 306
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTY 112
+PGP I V+EGDTL + N ++H HG+ +S +DG M + + PG + TY
Sbjct: 36 VPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDAEIS--SDGTAM-NKSDVEPGGTRTY 92
Query: 113 KFNV----INQEGTL------WWHGH---------VSLLRATVYGALIIRPKS 146
+ +GT +WH H +R +YG +I+R K
Sbjct: 93 TWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 145
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ +I + G W HCH+ H G+ F+V+
Sbjct: 232 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 268
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 22/113 (19%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG--RSY 110
+PGP I ++EGDTL + N +++H HG+ +S +DG ++ + PG R+Y
Sbjct: 39 IPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEIS--SDGTKQ-SRSDVEPGGTRTY 95
Query: 111 TYKFNVINQ--EGTL------WWHGH---------VSLLRATVYGALIIRPKS 146
T++ +V + +GT +WH H +R +YG +I+R K
Sbjct: 96 TWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 148
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ VI + G W HCH+ H G+ F+V+
Sbjct: 235 GFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 271
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+++ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHSVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HSVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
NG +PGPT+ VHEGD TLV N P+N+ H + A G +T +
Sbjct: 59 NGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAKLTN--VN 109
Query: 106 PGRSYTYKFNVINQ---------EGTLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
PG T +F EG + WH + + G L++ P+ G + P KP
Sbjct: 110 PGEQATLRFKADRSGTFVYHCAPEGMVPWH-----VVSGQSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HNVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+++ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHSVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HSVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 22/113 (19%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG--RSY 110
+PGP I V+EGDTL + N ++H HG+ +S +DG M + + PG R+Y
Sbjct: 33 VPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEIS--SDGTAM-NKSDVEPGGTRTY 89
Query: 111 TYKFNVINQ--EGTL------WWHGH---------VSLLRATVYGALIIRPKS 146
T++ + + +GT +WH H +R +YG +I+R K
Sbjct: 90 TWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 142
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ +I + G W HCH+ H G+ F+V+
Sbjct: 229 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 265
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 17 SSTLASAAIVEHSFHV--KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGD----TLVVHV 70
+T + +VE + + K + I NG +PGPT+ VHEGD TLV
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 FNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQ---------EG 121
N P+++ H + A G +T + PG T +F EG
Sbjct: 84 TNAMPHSVDFHG-------ATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKP 155
+ WH + + + G L++ P+ G + P KP
Sbjct: 135 MVPWH-----VVSGMSGTLMVLPRDGLKDPQGKP 163
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 36/122 (29%)
Query: 433 NNTSLLFAPKLTSVKTLKFNST-------------VEIVLQNTALIAVENHPIHIHGFDF 479
++ K T+++ + FN + V++ L N A A+ H DF
Sbjct: 40 EEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP------HSVDF 93
Query: 480 HVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL 539
H G K VNP G A +RF+A+ G + HC + +
Sbjct: 94 HGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCAPEGMV 136
Query: 540 PW 541
PW
Sbjct: 137 PW 138
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
NG +PGPT+ VHEGD TLV N P+N+ H + A G +T +
Sbjct: 59 NGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHG-------ATGALGGAKLTN--VN 109
Query: 106 PGRSYTYKFNVINQEGTLWWHGHVSLL-----RATVYGALIIRPKSGHEYPYPKP 155
PG T +F ++ GT +H S + + + G L++ P+ G + P P
Sbjct: 110 PGEQATLRFKA-DRSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAGAP 163
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 17/67 (25%)
Query: 475 HGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCH 534
H DFH G K VNP G A +RF+A+ G + HC
Sbjct: 89 HNVDFHGATGALGG-------AKLTNVNP----------GEQATLRFKADRSGTFVYHCA 131
Query: 535 LDVHLPW 541
+PW
Sbjct: 132 PSGMVPW 138
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 24/114 (21%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGI-FQLLSPWADGPNMITQCPITPG--RS 109
+PGP I V+EGDTL + N ++H HG+ F++ S DG M + + PG R+
Sbjct: 37 VPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISS---DGTAM-NKSDVEPGGTRT 92
Query: 110 YTYKFNVINQ--EGTL------WWHGH---------VSLLRATVYGALIIRPKS 146
YT++ + + +GT +WH H +R +YG +I+R K
Sbjct: 93 YTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKG 146
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ +I + G W HCH+ H G+ F+V+
Sbjct: 233 GFQIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKK 269
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 22/113 (19%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG--RSY 110
+PGP + + EGDTL + + N + +++H HG+ ++ +DG ++ + PG R Y
Sbjct: 55 VPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVN--SDG-TLMNGSAVMPGQTRRY 111
Query: 111 TYKFNVINQ-------EGTL-WWHGHVSLLRAT---------VYGALIIRPKS 146
T++ +V + EGT +WH H + +YGAL++R +
Sbjct: 112 TWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQG 164
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 515 GWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551
G+ VI + PG+W HCH+ H G+A F+V N
Sbjct: 251 GFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRN 287
>pdb|3IU6|A Chain A, Crystal Structure Of The Sixth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 147
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 414 PNFPNNPPLKFDYTNPNVSNN 434
PNFPN PPL FD NV NN
Sbjct: 42 PNFPNKPPLTFDIIRKNVENN 62
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 19/107 (17%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
NG +PGPT+ VHEGD TLV N P+N+ H + +
Sbjct: 55 NGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGALGGA---------GLTQVV 105
Query: 106 PGRSYTYKFNVINQEGTLWWH----GHVSL-LRATVYGALIIRPKSG 147
PG+ +F ++ GT +H G V + + + GAL++ P+ G
Sbjct: 106 PGQEAVLRFKA-DRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDG 151
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 29/237 (12%)
Query: 46 ITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105
+ +NGR GPTIRV +GD + + N N+++ G+ Q+ P GP + ++
Sbjct: 40 VWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM----MS 94
Query: 106 PGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVY----GALIIRPKSGHEYPYPK--PDKE 158
P + + TLW+H + A VY G ++ + P P +
Sbjct: 95 PNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDD 154
Query: 159 VPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEG 218
P+++ + N E +GG + D +NG Q+P ++V G
Sbjct: 155 FPVIIQDKRLDNFGTPEYNEPGSGGF--VGDTLLVNG--------VQSP----YVEVSRG 200
Query: 219 KTYLLRIINAALNNQLFFKIANHK-FTVVSVDASYT-DPYVTDVVVIAPGQTTDVLL 273
LR++NA+ + + ++ + + V+S D + P + +APG+ ++L+
Sbjct: 201 WVR-LRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 26/142 (18%)
Query: 37 IGRLCR--QRVITAVNGRLPGPTIRVHEGDTLVVHVFN----ESPYNITIHWHGIFQLLS 90
+GR+ + V + +PG IRV EGD + ++ N + P+NI +H
Sbjct: 39 VGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH--------- 89
Query: 91 PWADGPNMITQCPIT-PGRSYTYKFNVINQEGTLWWHGHVS----LLRATVYGALIIRPK 145
GP + T PG + T+ F +N G +H + + +YG +++ PK
Sbjct: 90 -AVTGPGGGAESSFTAPGHTSTFNFKALNP-GLYIYHCATAPVGMHIANGMYGLILVEPK 147
Query: 146 SGHEYPYPKPDKEVPILLGEWW 167
G D+E ++ G+++
Sbjct: 148 EG----LAPVDREYYLVQGDFY 165
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 467 VENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNP 526
++ H +H HG F +G Y++ + + G + + P
Sbjct: 972 IDLHTVHFHGHSFQYKHRGV--YSS---------------DVFDIFPGTYQTLEMFPRTP 1014
Query: 527 GVWFVHCHLDVHLPWGLATAFVV 549
G+W +HCH+ H+ G+ T + V
Sbjct: 1015 GIWLLHCHVTDHIHAGMETTYTV 1037
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 55 GPTIRVHEGDTLVVHVFNESPYNITIHWHGI-FQLLSPWADGPNMITQC-----PITPGR 108
GP I+ GD + VH+ N + T H HGI + A P+ T + PG
Sbjct: 75 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 134
Query: 109 SYTYKFNVINQEG---------TLWWHGHVSL---LRATVYGALIIRPKSGHEYPYPKP- 155
YTY ++ T +H H+ + + + G LII K + K
Sbjct: 135 QYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHI 194
Query: 156 DKEVPILL 163
D+E ++
Sbjct: 195 DREFVVMF 202
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 467 VENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNP 526
++ H +H HG F +G Y++ + + G + + P
Sbjct: 991 IDLHTVHFHGHSFQYKHRGV--YSS---------------DVFDIFPGTYQTLEMFPRTP 1033
Query: 527 GVWFVHCHLDVHLPWGLATAFVV 549
G+W +HCH+ H+ G+ T + V
Sbjct: 1034 GIWLLHCHVTDHIHAGMETTYTV 1056
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 55 GPTIRVHEGDTLVVHVFNESPYNITIHWHGI-FQLLSPWADGPNMITQC-----PITPGR 108
GP I+ GD + VH+ N + T H HGI + A P+ T + PG
Sbjct: 94 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 153
Query: 109 SYTYKFNVINQEG---------TLWWHGHVSL---LRATVYGALIIRPKSGHEYPYPKP- 155
YTY ++ T +H H+ + + + G LII K + K
Sbjct: 154 QYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHI 213
Query: 156 DKEVPILL 163
D+E ++
Sbjct: 214 DREFVVMF 221
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 50 NGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRS 109
NG++PGP +RV GDT+ +H+ N + ++ H + + G TQ PG
Sbjct: 189 NGKVPGPFLRVRVGDTVELHLKN---HKDSLMVHSVDFHGATGPGGAAAFTQT--DPGEE 243
Query: 110 YTYKFNVINQEGTLWWHGHV----SLLRATVYGALIIRPKSGHEYPYPKPDKEVPILLGE 165
F + G +H + + +YG L++ P+ G P+ D+E ++ GE
Sbjct: 244 TVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGG----LPQVDREFYVMQGE 298
Query: 166 WWNANVVDVENQAQI 180
+ + ++
Sbjct: 299 IYTVKSFGTSGEQEM 313
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGI----FQLLSPWADG--PNMITQCPITP 106
L GPT+ GD + VH N++ ++IH GI F + ++D P + P
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 107 GRSYTYKFNVINQEG 121
G+ YTY++ + G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 55 GPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWA----DGPNMITQCPITPGRSY 110
GP + GDTL++ N++ I+ HGI + ++ G + PI PG +
Sbjct: 451 GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIF 510
Query: 111 TYKFNVINQEG 121
YK+ V ++G
Sbjct: 511 KYKWTVTVEDG 521
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGI-FQLLSPWADGPNMITQCP-----ITP 106
L GPTI+ DT+V+ + N + + +++H G+ + S A+ + +Q + P
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFP 131
Query: 107 GRSYTYKFNVINQEG---------TLWWHGHVSLLR---ATVYGALII 142
G S+TY + V+ + G T + HV L++ + + GAL++
Sbjct: 132 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 179
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 55 GPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWA----DGPNMITQCPITPGRSY 110
GP + GDTL++ N++ I+ HGI + ++ G + PI PG +
Sbjct: 450 GPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILPGEIF 509
Query: 111 TYKFNVINQEG 121
YK+ V ++G
Sbjct: 510 KYKWTVTVEDG 520
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 18/108 (16%)
Query: 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGI-FQLLSPWADGPNMITQCP-----ITP 106
L GPTI+ DT+V+ + N + + +++H G+ + S A+ + +Q + P
Sbjct: 71 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFP 130
Query: 107 GRSYTYKFNVINQEG---------TLWWHGHVSLLR---ATVYGALII 142
G S+TY + V+ + G T + HV L++ + + GAL++
Sbjct: 131 GGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 178
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 477 FDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNP 526
DFH+ A G Y AAR + + NL+ P R+ + P + +RFQ+ P
Sbjct: 3 IDFHLSASQKGTYQAARSLAR-NLLMPARQTYLQHPPN--SPLRFQSTQP 49
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 33 KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP----YNITIHWHGIFQL 88
K L I R + NG +PGP + VHE D + + + N +NI H
Sbjct: 48 KKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALG 107
Query: 89 LSPWADGPNMITQCPITPGRSYTYKFNVIN---------QEGTLWWHGHVSLLRATVYGA 139
+ PG T +F EG + WH + + + GA
Sbjct: 108 GG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGA 153
Query: 140 LIIRPKSG 147
+++ P+ G
Sbjct: 154 IMVLPRDG 161
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G +RF+A PGV+ HC + +PW + +
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM 150
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 33 KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP----YNITIHWHGIFQL 88
K L I R + NG +PGP + VHE D + + + N +NI H
Sbjct: 48 KKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALG 107
Query: 89 LSPWADGPNMITQCPITPGRSYTYKFNVIN---------QEGTLWWHGHVSLLRATVYGA 139
+ PG T +F EG + WH + + + GA
Sbjct: 108 GG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGA 153
Query: 140 LIIRPKSG 147
+++ P+ G
Sbjct: 154 IMVLPRDG 161
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G +RF+A PGV+ HC + +PW + +
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM 150
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 33 KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP----YNITIHWHGIFQL 88
K L I R + NG +PGP + VHE D + + + N +NI H
Sbjct: 48 KKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALG 107
Query: 89 LSPWADGPNMITQCPITPGRSYTYKFNVIN---------QEGTLWWHGHVSLLRATVYGA 139
+ PG T +F EG + WH + + + GA
Sbjct: 108 GG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGA 153
Query: 140 LIIRPKSG 147
+++ P+ G
Sbjct: 154 IMVLPRDG 161
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G +RF+A PGV+ HC + +PW + +
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM 150
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 33 KNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP----YNITIHWHGIFQL 88
K L I R + NG +PGP + VHE D + + + N +NI H
Sbjct: 48 KKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALG 107
Query: 89 LSPWADGPNMITQCPITPGRSYTYKFNVIN---------QEGTLWWHGHVSLLRATVYGA 139
+ PG T +F EG + WH + + + GA
Sbjct: 108 GG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWH-----VTSGMNGA 153
Query: 140 LIIRPKSG 147
+++ P+ G
Sbjct: 154 IMVLPRDG 161
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G +RF+A PGV+ HC + +PW + +
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM 150
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 118 NQEGTLWW-HGH-VSLLR----ATVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANV 171
+ + T WW H H +++ R A +YG ++R P D+E+P+L+ +
Sbjct: 162 DHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIPLLIAD----RN 217
Query: 172 VDVENQAQITGGAPN----ISDAYTINGKPGDL---YPCSQNPNQIYKLKVVEGKTYLLR 224
+D + ++ G + + + GKP + P + +I+ V+ Y LR
Sbjct: 218 LDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIWPYADVDDGWYRLR 277
Query: 225 IINAA 229
++NA+
Sbjct: 278 LVNAS 282
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G ++RF+A PGV+ HC +PW + +
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWAVVSGM 153
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENG 552
G ++RF+A PGV+ HC +PW + + ENG
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSG---ENG 155
>pdb|1PZS|A Chain A, Crystal Structure Of A Cu-Zn Superoxide Dismutase From
Mycobacterium Tuberculosis At 1.63 Resolution
Length = 208
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 425 DYTNPNVSNNTSLLFAPKLTSVKTLKFN-----STVEIVLQNTALIAVENHPIHIH 475
D +P + TS L AP T V T KF +TV I + H +HIH
Sbjct: 31 DEESPGAQSLTSTLTAPDGTKVATAKFEFANGYATVTIATTGVGKLTPGFHGLHIH 86
>pdb|1GWH|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase Complexed With Nadph
pdb|1GWE|A Chain A, Atomic Resolution Structure Of Micrococcus Lysodeikticus
Catalase
Length = 503
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 422 LKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENH--PIHIHGFDF 479
++ T P+ + +T AP ++ ++L S IVL +T L+ H ++I
Sbjct: 1 MEHQKTTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRP 60
Query: 480 HVLAQG-FGNYNAARDIKKF 498
H G FG + D+ K+
Sbjct: 61 HAKGSGAFGEFEVTEDVSKY 80
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIH 81
+G +PGP + VHEGD TL+ N P+NI H
Sbjct: 56 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 91
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIH 81
+G +PGP + VHEGD TL+ N P+NI H
Sbjct: 58 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIH 81
+G +PGP + VHEGD TL+ N P+NI H
Sbjct: 53 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIH 81
+G +PGP + VHEGD TL+ N P+NI H
Sbjct: 58 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 50 NGRLPGPTIRVHEGD----TLVVHVFNESPYNITIH 81
+G +PGP + VHEGD TL+ N P+NI H
Sbjct: 53 DGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1HBZ|A Chain A, Catalase From Micrococcus Lysodeikticu
Length = 498
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 427 TNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENH--PIHIHGFDFHVLAQ 484
T P+ + +T AP ++ ++L S IVL +T L+ H ++I H
Sbjct: 1 TTPHATGSTRQNGAPAVSDRQSLTVGSEGPIVLHDTHLLETHQHFNRMNIPERRPHAKGS 60
Query: 485 G-FGNYNAARDIKKF 498
G FG + D+ K+
Sbjct: 61 GAFGEFEVTEDVSKY 75
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAF 547
G ++RF+A PGV+ HC +PW + +
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGL 147
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPW 147
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 113 GEKTILRFKATKPGVFVYHCAPPGMVPW 140
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 117 GEKTILRFKATKPGVFVYHCAPPGMVPW 144
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 514 GGWAVIRFQANNPGVWFVHCHLDVHLPW 541
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,318,730
Number of Sequences: 62578
Number of extensions: 749385
Number of successful extensions: 1756
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 260
length of query: 569
length of database: 14,973,337
effective HSP length: 104
effective length of query: 465
effective length of database: 8,465,225
effective search space: 3936329625
effective search space used: 3936329625
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)