Query 008351
Match_columns 569
No_of_seqs 237 out of 1733
Neff 9.0
Searched_HMMs 46136
Date Thu Mar 28 22:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 4E-108 8E-113 881.8 63.5 539 23-569 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 1E-106 3E-111 860.3 60.0 520 21-569 23-554 (596)
3 PLN02991 oxidoreductase 100.0 1E-104 2E-109 842.1 61.1 502 12-569 15-530 (543)
4 PLN02835 oxidoreductase 100.0 6E-104 1E-108 840.7 60.6 509 10-569 14-531 (539)
5 PLN02792 oxidoreductase 100.0 5E-104 1E-108 838.5 59.3 509 20-569 11-523 (536)
6 PLN02354 copper ion binding / 100.0 2E-103 4E-108 837.9 60.6 505 21-569 23-538 (552)
7 PLN02168 copper ion binding / 100.0 1E-102 3E-107 827.3 60.1 500 21-569 22-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 2E-102 4E-107 819.1 58.8 540 7-569 10-555 (563)
9 PLN02191 L-ascorbate oxidase 100.0 5.6E-98 1E-102 801.9 58.9 519 16-569 14-561 (574)
10 PLN02604 oxidoreductase 100.0 1.1E-97 2E-102 801.8 61.3 524 15-569 14-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.4E-96 3E-101 791.5 58.1 511 25-569 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 6.8E-94 1.5E-98 768.1 54.0 492 26-553 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.8E-79 3.9E-84 655.1 51.3 421 26-550 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 8.9E-78 1.9E-82 638.0 46.8 427 26-549 46-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.8E-75 3.9E-80 615.5 45.6 403 27-551 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.7E-59 3.7E-64 497.3 42.5 410 28-550 36-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 6.6E-48 1.4E-52 385.5 25.8 265 21-312 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 2.4E-35 5.2E-40 251.6 12.1 116 31-146 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 7.2E-30 1.6E-34 227.4 11.1 108 440-551 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 3.7E-27 8.1E-32 214.3 12.7 150 158-310 2-158 (159)
21 TIGR01480 copper_res_A copper- 99.7 7.7E-17 1.7E-21 173.6 20.5 240 47-308 249-586 (587)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.3E-15 2.8E-20 152.9 25.3 241 188-551 47-297 (311)
23 TIGR03095 rusti_cyanin rusticy 99.7 4E-17 8.7E-22 144.6 12.5 101 41-143 38-148 (148)
24 PRK10965 multicopper oxidase; 99.6 3E-14 6.5E-19 152.4 19.7 235 43-293 211-513 (523)
25 TIGR03389 laccase laccase, pla 99.6 5.8E-13 1.3E-17 144.2 24.3 256 45-310 167-521 (539)
26 PLN02835 oxidoreductase 99.6 4.6E-13 9.9E-18 143.9 23.0 257 44-310 191-513 (539)
27 PRK10883 FtsI repressor; Provi 99.5 6.6E-13 1.4E-17 140.9 20.3 224 41-293 206-458 (471)
28 TIGR03096 nitroso_cyanin nitro 99.5 1.5E-13 3.4E-18 117.2 11.9 113 11-139 10-130 (135)
29 COG2132 SufI Putative multicop 99.4 8.4E-12 1.8E-16 133.0 17.3 237 41-293 186-439 (451)
30 TIGR03388 ascorbase L-ascorbat 99.3 7.4E-11 1.6E-15 127.9 21.7 233 57-293 204-514 (541)
31 PLN02991 oxidoreductase 99.3 2.5E-10 5.5E-15 122.3 24.9 242 43-289 189-497 (543)
32 PLN02168 copper ion binding / 99.3 8.8E-11 1.9E-15 126.1 20.7 239 44-288 188-501 (545)
33 PLN02604 oxidoreductase 99.3 5.4E-11 1.2E-15 129.3 19.4 234 56-293 224-537 (566)
34 PLN02354 copper ion binding / 99.3 9.6E-11 2.1E-15 126.3 21.0 240 45-290 190-506 (552)
35 PLN02792 oxidoreductase 99.3 4.6E-10 1E-14 120.5 25.4 244 43-291 178-492 (536)
36 TIGR03390 ascorbOXfungal L-asc 99.3 1.8E-10 3.8E-15 124.6 21.1 245 45-293 172-522 (538)
37 PLN02191 L-ascorbate oxidase 99.2 1.6E-09 3.4E-14 117.8 19.9 231 57-293 227-537 (574)
38 PLN00044 multi-copper oxidase- 99.1 8.9E-09 1.9E-13 111.3 22.8 231 56-291 217-522 (596)
39 PF07731 Cu-oxidase_2: Multico 99.1 1.4E-09 3.1E-14 96.5 11.2 82 209-292 32-124 (138)
40 KOG1263 Multicopper oxidases [ 98.8 8.1E-07 1.8E-11 95.2 22.4 246 44-293 192-526 (563)
41 PF07732 Cu-oxidase_3: Multico 98.8 2.3E-08 5.1E-13 85.4 8.5 90 445-552 26-116 (117)
42 PF13473 Cupredoxin_1: Cupredo 98.6 8.7E-08 1.9E-12 80.4 7.6 102 8-142 3-104 (104)
43 PRK02710 plastocyanin; Provisi 98.5 2.1E-06 4.6E-11 73.6 12.7 73 56-143 47-119 (119)
44 TIGR02656 cyanin_plasto plasto 98.1 1.5E-05 3.2E-10 66.1 8.2 81 56-143 17-99 (99)
45 TIGR03095 rusti_cyanin rusticy 98.0 3.1E-05 6.8E-10 68.9 9.7 92 445-550 52-148 (148)
46 PF00394 Cu-oxidase: Multicopp 98.0 4.1E-05 8.8E-10 69.6 9.4 93 444-550 59-156 (159)
47 TIGR02657 amicyanin amicyanin. 97.9 6.9E-05 1.5E-09 59.9 8.2 73 56-143 11-83 (83)
48 PF06525 SoxE: Sulfocyanin (So 97.9 0.00023 5E-09 64.8 12.4 103 45-148 74-191 (196)
49 PRK02888 nitrous-oxide reducta 97.8 7.6E-05 1.7E-09 80.0 10.0 98 37-145 534-635 (635)
50 PF00127 Copper-bind: Copper b 97.8 5.4E-05 1.2E-09 62.7 6.6 82 56-143 17-99 (99)
51 TIGR03094 sulfo_cyanin sulfocy 97.7 0.00074 1.6E-08 60.2 12.6 100 47-147 75-189 (195)
52 TIGR02656 cyanin_plasto plasto 97.7 0.0003 6.5E-09 58.3 8.7 83 445-550 17-99 (99)
53 COG3794 PetE Plastocyanin [Ene 97.6 0.00046 1E-08 59.0 9.5 75 56-144 54-128 (128)
54 TIGR03096 nitroso_cyanin nitro 97.5 0.00044 9.5E-09 59.6 7.4 65 209-291 59-123 (135)
55 TIGR02375 pseudoazurin pseudoa 97.1 0.0033 7.2E-08 53.3 8.3 75 56-146 15-90 (116)
56 PF00127 Copper-bind: Copper b 97.0 0.0075 1.6E-07 49.9 9.6 83 445-550 17-99 (99)
57 PF13473 Cupredoxin_1: Cupredo 96.9 0.0052 1.1E-07 51.3 8.6 63 209-289 33-95 (104)
58 TIGR03102 halo_cynanin halocya 96.8 0.0085 1.8E-07 50.7 8.7 73 56-143 42-115 (115)
59 COG4454 Uncharacterized copper 96.7 0.016 3.4E-07 50.8 9.7 88 52-144 59-158 (158)
60 PF06525 SoxE: Sulfocyanin (So 96.6 0.014 3.1E-07 53.4 9.3 103 190-310 75-187 (196)
61 PRK02888 nitrous-oxide reducta 96.6 0.012 2.5E-07 63.7 9.8 78 446-551 556-634 (635)
62 PRK02710 plastocyanin; Provisi 96.2 0.027 5.8E-07 48.3 8.2 72 446-550 48-119 (119)
63 PRK10378 inactive ferrous ion 96.0 0.047 1E-06 55.9 10.0 78 53-146 41-119 (375)
64 TIGR02375 pseudoazurin pseudoa 95.6 0.08 1.7E-06 44.9 8.6 33 519-553 58-90 (116)
65 COG4454 Uncharacterized copper 95.2 0.11 2.4E-06 45.6 8.0 93 447-550 65-157 (158)
66 PF00116 COX2: Cytochrome C ox 94.8 0.59 1.3E-05 40.0 11.4 64 210-292 45-108 (120)
67 PF00116 COX2: Cytochrome C ox 93.7 0.4 8.7E-06 41.0 8.2 73 55-142 45-119 (120)
68 TIGR02695 azurin azurin. Azuri 93.3 0.41 8.9E-06 40.6 7.4 87 55-141 15-124 (125)
69 TIGR02657 amicyanin amicyanin. 92.5 1 2.2E-05 35.7 8.4 73 445-550 11-83 (83)
70 TIGR03102 halo_cynanin halocya 91.9 1.1 2.5E-05 37.8 8.4 74 445-550 42-115 (115)
71 PF12690 BsuPI: Intracellular 91.2 2.4 5.2E-05 33.5 9.1 66 220-286 3-82 (82)
72 TIGR02695 azurin azurin. Azuri 89.8 0.72 1.6E-05 39.2 5.1 79 210-288 15-112 (125)
73 TIGR03094 sulfo_cyanin sulfocy 88.2 6.7 0.00014 35.6 10.3 96 443-552 83-187 (195)
74 TIGR02866 CoxB cytochrome c ox 86.7 6.9 0.00015 36.8 10.4 76 56-146 117-194 (201)
75 COG3794 PetE Plastocyanin [Ene 84.8 6.1 0.00013 34.0 8.1 74 446-551 55-128 (128)
76 TIGR02866 CoxB cytochrome c ox 83.6 5.9 0.00013 37.3 8.4 76 445-552 117-193 (201)
77 COG1622 CyoA Heme/copper-type 81.1 12 0.00025 36.4 9.4 65 210-293 136-200 (247)
78 COG1622 CyoA Heme/copper-type 77.6 9.4 0.0002 37.1 7.6 77 56-147 137-215 (247)
79 PF12690 BsuPI: Intracellular 75.6 16 0.00036 28.8 7.2 58 57-125 17-80 (82)
80 COG1470 Predicted membrane pro 75.3 1.2E+02 0.0025 32.2 16.7 180 58-291 278-470 (513)
81 MTH00047 COX2 cytochrome c oxi 69.4 37 0.00081 31.7 9.2 62 212-292 117-178 (194)
82 PRK10378 inactive ferrous ion 68.4 14 0.00031 38.1 6.7 64 209-288 42-105 (375)
83 TIGR03079 CH4_NH3mon_ox_B meth 68.0 42 0.00091 34.1 9.6 17 100-116 336-352 (399)
84 COG4263 NosZ Nitrous oxide red 67.4 10 0.00022 39.4 5.3 77 56-143 558-636 (637)
85 PF07705 CARDB: CARDB; InterP 66.1 66 0.0014 25.6 9.9 67 214-289 14-84 (101)
86 MTH00140 COX2 cytochrome c oxi 61.4 27 0.00058 33.6 6.8 62 211-291 140-201 (228)
87 PF05506 DUF756: Domain of unk 60.6 81 0.0017 25.1 8.6 63 55-126 8-73 (89)
88 PF05984 Cytomega_UL20A: Cytom 58.8 9.6 0.00021 29.5 2.6 36 1-36 1-36 (100)
89 PF04151 PPC: Bacterial pre-pe 58.6 44 0.00094 25.1 6.4 66 210-287 4-69 (70)
90 COG3354 FlaG Putative archaeal 55.2 80 0.0017 27.6 7.8 63 219-286 70-140 (154)
91 PF05938 Self-incomp_S1: Plant 54.6 43 0.00094 27.8 6.3 68 67-144 2-70 (110)
92 PF10633 NPCBM_assoc: NPCBM-as 54.4 97 0.0021 23.8 7.9 64 216-288 2-75 (78)
93 MTH00008 COX2 cytochrome c oxi 53.6 45 0.00098 32.0 6.9 62 211-291 140-201 (228)
94 PF01835 A2M_N: MG2 domain; I 51.9 37 0.0008 27.5 5.4 70 214-289 10-86 (99)
95 PTZ00047 cytochrome c oxidase 50.8 65 0.0014 29.0 6.9 62 212-292 74-135 (162)
96 PF14344 DUF4397: Domain of un 48.7 1.6E+02 0.0035 24.7 11.1 37 240-276 44-82 (122)
97 PRK13254 cytochrome c-type bio 48.6 30 0.00064 30.8 4.4 70 23-97 31-101 (148)
98 COG2967 ApaG Uncharacterized p 47.7 29 0.00063 29.2 3.9 54 68-122 34-95 (126)
99 PRK10449 heat-inducible protei 47.5 35 0.00076 30.0 4.8 44 1-53 1-44 (140)
100 COG3495 Uncharacterized protei 47.3 11 0.00023 32.6 1.4 26 1-26 1-26 (166)
101 TIGR01433 CyoA cytochrome o ub 46.8 49 0.0011 31.7 6.0 63 211-292 139-201 (226)
102 PRK05461 apaG CO2+/MG2+ efflux 45.8 54 0.0012 28.3 5.5 49 220-271 32-84 (127)
103 MTH00140 COX2 cytochrome c oxi 45.3 91 0.002 29.9 7.6 76 445-552 140-216 (228)
104 MTH00098 COX2 cytochrome c oxi 45.2 66 0.0014 30.9 6.6 62 211-291 140-201 (227)
105 MTH00047 COX2 cytochrome c oxi 44.8 1.8E+02 0.0039 27.2 9.2 76 445-552 116-192 (194)
106 PF07691 PA14: PA14 domain; I 44.8 1.6E+02 0.0035 25.3 8.8 61 212-277 53-120 (145)
107 PF04379 DUF525: Protein of un 43.7 37 0.0008 27.3 3.9 49 220-271 15-67 (90)
108 smart00758 PA14 domain in bact 41.3 1.7E+02 0.0036 25.1 8.2 62 212-278 51-113 (136)
109 MTH00129 COX2 cytochrome c oxi 39.8 79 0.0017 30.4 6.3 62 211-291 140-201 (230)
110 MTH00051 COX2 cytochrome c oxi 39.8 93 0.002 30.0 6.8 61 211-290 144-204 (234)
111 KOG4063 Major epididymal secre 39.7 2.7E+02 0.0059 24.7 9.2 62 56-117 48-123 (158)
112 TIGR01432 QOXA cytochrome aa3 39.3 67 0.0015 30.5 5.7 63 211-292 130-192 (217)
113 PF11322 DUF3124: Protein of u 38.6 1.4E+02 0.003 25.6 6.7 63 221-287 27-93 (125)
114 PF14524 Wzt_C: Wzt C-terminal 38.2 1.3E+02 0.0027 25.8 7.0 73 213-288 29-107 (142)
115 PF15415 DUF4622: Protein of u 38.1 1.7E+02 0.0037 28.0 7.8 42 211-254 94-137 (310)
116 MTH00154 COX2 cytochrome c oxi 37.7 1.2E+02 0.0026 29.1 7.2 62 211-291 140-201 (227)
117 MTH00023 COX2 cytochrome c oxi 36.8 1.2E+02 0.0026 29.3 7.1 62 211-291 151-212 (240)
118 PRK13792 lysozyme inhibitor; P 36.7 1.2E+02 0.0027 26.1 6.2 14 63-76 54-67 (127)
119 PF07437 YfaZ: YfaZ precursor; 36.1 35 0.00076 31.4 3.1 32 1-36 1-32 (180)
120 MTH00185 COX2 cytochrome c oxi 36.0 1.2E+02 0.0027 29.1 6.9 62 211-291 140-201 (230)
121 TIGR01433 CyoA cytochrome o ub 35.4 1.1E+02 0.0023 29.4 6.4 76 445-552 139-215 (226)
122 COG1188 Ribosome-associated he 35.0 32 0.00068 28.2 2.2 31 46-76 35-65 (100)
123 PF14392 zf-CCHC_4: Zinc knuck 34.8 61 0.0013 22.6 3.4 41 501-541 4-45 (49)
124 PF08139 LPAM_1: Prokaryotic m 34.8 28 0.00062 20.7 1.4 17 2-18 8-24 (25)
125 PF11142 DUF2917: Protein of u 34.6 81 0.0018 23.4 4.3 30 213-247 2-31 (63)
126 MTH00076 COX2 cytochrome c oxi 34.4 1.3E+02 0.0028 28.9 6.7 61 211-290 140-200 (228)
127 PF14326 DUF4384: Domain of un 34.2 2.3E+02 0.0049 22.1 8.1 24 215-238 3-26 (83)
128 PF11614 FixG_C: IG-like fold 33.4 1.2E+02 0.0026 25.5 5.8 48 220-276 34-83 (118)
129 PRK13202 ureB urease subunit b 33.4 1.3E+02 0.0029 24.7 5.5 63 212-275 12-84 (104)
130 PTZ00047 cytochrome c oxidase 31.8 3.2E+02 0.0069 24.7 8.2 75 445-551 73-148 (162)
131 PRK09838 periplasmic copper-bi 30.8 1.7E+02 0.0037 24.8 6.1 22 59-80 88-109 (115)
132 PF04744 Monooxygenase_B: Mono 30.8 1E+02 0.0022 31.6 5.4 104 2-120 200-336 (381)
133 MTH00117 COX2 cytochrome c oxi 30.2 1.9E+02 0.0042 27.7 7.2 62 211-291 140-201 (227)
134 COG5633 Predicted periplasmic 29.8 2.1E+02 0.0045 24.2 6.2 29 55-83 46-75 (123)
135 PRK13159 cytochrome c-type bio 29.5 2.2E+02 0.0048 25.5 6.8 73 22-98 30-103 (155)
136 PRK13150 cytochrome c-type bio 28.6 1.3E+02 0.0028 27.0 5.2 50 45-97 58-108 (159)
137 PF11797 DUF3324: Protein of u 28.3 3.2E+02 0.0069 23.9 7.7 68 220-290 45-116 (140)
138 MTH00038 COX2 cytochrome c oxi 26.7 2.1E+02 0.0046 27.4 6.8 63 211-292 140-202 (229)
139 COG3338 Cah Carbonic anhydrase 26.5 38 0.00082 32.1 1.5 37 1-57 1-37 (250)
140 MTH00168 COX2 cytochrome c oxi 26.3 1.6E+02 0.0036 28.1 6.0 62 211-291 140-201 (225)
141 cd00918 Der-p2_like Several gr 26.3 3.7E+02 0.0079 22.9 7.5 61 55-116 19-87 (120)
142 TIGR03352 VI_chp_3 type VI sec 26.2 1E+02 0.0022 27.3 4.2 18 99-116 85-102 (146)
143 PRK10525 cytochrome o ubiquino 26.1 1.3E+02 0.0029 30.4 5.4 63 211-292 151-213 (315)
144 MTH00080 COX2 cytochrome c oxi 25.7 2.4E+02 0.0051 27.2 6.9 62 211-291 143-204 (231)
145 TIGR00192 urease_beta urease, 25.6 2.2E+02 0.0048 23.3 5.5 63 212-275 12-83 (101)
146 PF14481 Fimbrial_PilY2: Type 25.3 27 0.00059 28.6 0.3 15 55-69 64-79 (118)
147 COG3241 Azurin [Energy product 25.0 95 0.0021 26.3 3.4 38 251-288 93-136 (151)
148 PF15240 Pro-rich: Proline-ric 24.5 46 0.00099 30.4 1.7 15 5-19 1-15 (179)
149 cd00916 Npc2_like Niemann-Pick 24.5 4.1E+02 0.0088 22.6 7.5 61 56-116 22-91 (123)
150 PF10989 DUF2808: Protein of u 24.0 87 0.0019 27.7 3.4 27 511-537 99-129 (146)
151 MTH00129 COX2 cytochrome c oxi 24.0 2.8E+02 0.0061 26.6 7.1 75 445-551 140-215 (230)
152 COG4704 Uncharacterized protei 23.6 72 0.0016 27.5 2.6 18 105-123 72-89 (151)
153 MTH00139 COX2 cytochrome c oxi 23.6 2E+02 0.0044 27.5 6.1 62 211-291 140-201 (226)
154 PF02927 CelD_N: N-terminal ig 23.2 2.5E+02 0.0053 22.4 5.6 21 267-287 63-85 (91)
155 PRK03999 translation initiatio 22.9 4.6E+02 0.01 22.6 7.5 44 187-239 13-60 (129)
156 MTH00008 COX2 cytochrome c oxi 22.8 3.9E+02 0.0085 25.6 7.9 75 445-551 140-215 (228)
157 PF07385 DUF1498: Protein of u 22.0 2.6E+02 0.0056 26.6 6.1 14 258-271 153-166 (225)
158 PRK01904 hypothetical protein; 21.3 1.8E+02 0.004 27.6 5.2 28 44-71 30-66 (219)
159 PF11948 DUF3465: Protein of u 21.0 1.6E+02 0.0035 25.4 4.2 23 104-127 86-112 (131)
160 PRK13861 type IV secretion sys 20.8 1.2E+02 0.0025 30.4 3.9 64 1-67 1-66 (292)
161 PRK13203 ureB urease subunit b 20.4 2.9E+02 0.0063 22.7 5.3 62 213-275 13-83 (102)
162 COG4263 NosZ Nitrous oxide red 20.3 2E+02 0.0044 30.3 5.4 61 57-128 549-609 (637)
163 MTH00023 COX2 cytochrome c oxi 20.3 4.9E+02 0.011 25.2 8.0 75 445-551 151-226 (240)
164 PF10989 DUF2808: Protein of u 20.2 2.7E+02 0.0058 24.5 5.7 31 263-293 99-132 (146)
165 PF14263 DUF4354: Domain of un 20.2 4.5E+02 0.0097 22.6 6.6 13 1-13 1-13 (124)
166 COG4633 Plastocyanin domain co 20.2 4.7E+02 0.01 24.9 7.3 90 38-148 79-173 (272)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3.7e-108 Score=881.83 Aligned_cols=539 Identities=58% Similarity=1.078 Sum_probs=438.7
Q ss_pred cceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccc
Q 008351 23 AAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQC 102 (569)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~ 102 (569)
+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||+|++|||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeEEEEEeCCCCcceeEecchhhhhccceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHhcC
Q 008351 103 PITPGRSYTYKFNVINQEGTLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITG 182 (569)
Q Consensus 103 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g 182 (569)
+|+||++|+|+|++++++||||||||...++.||+|+|||+++.+.++++..+|+|++|+|+||++....+++......|
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998569999999999988888999999999987766777678999999999999988877766555556
Q ss_pred CCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEE
Q 008351 183 GAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVV 262 (569)
Q Consensus 183 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~ 262 (569)
..+..++.++||||.+.+++|+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~--~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~ 238 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSS--KDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIV 238 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCC--CCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEE
Confidence 55567899999999887888876 4568899999999999999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccccccCCCC
Q 008351 263 IAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFYSNLTGLT 342 (569)
Q Consensus 263 l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~ 342 (569)
|++||||||+|++++.+|+|||++.....+.. .+......|||+|.+......+..+..+..++......+..++..+.
T Consensus 239 i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~-~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (539)
T TIGR03389 239 IGPGQTTNVLLTADQSPGRYFMAARPYMDAPG-AFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLN 317 (539)
T ss_pred ecCCCEEEEEEECCCCCceEEEEEeccccCcc-CCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccccc
Confidence 99999999999999888999999987644432 12345689999999865432222232232322221111122333443
Q ss_pred CCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcccCCccCCCCCCCCCC
Q 008351 343 DGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPL 422 (569)
Q Consensus 343 ~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~p~ 422 (569)
.+..+..+|..+|+++++.+.+....+.. ..+...++..+.|.+|+.+|..|. .|++++.+.+.+|.+..+++..+|+
T Consensus 318 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~-~p~l~~~~~~~~~~~~~~~~~~~p~ 395 (539)
T TIGR03389 318 SAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPT-TALLQAHYFGISGVFTTDFPANPPT 395 (539)
T ss_pred ccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCC-cchhhhhhcccCCccccCCccCCCc
Confidence 33333334456777777666543221100 011122355789999999998886 6777777666667666677777888
Q ss_pred CccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCC
Q 008351 423 KFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVN 502 (569)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~ 502 (569)
.|++++.... .+.....++.++.++.|++|||+|+|.+......||||||||+||||++|.|.|+.......+|+.|
T Consensus 396 ~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~n 472 (539)
T TIGR03389 396 KFNYTGTNLP---NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVD 472 (539)
T ss_pred cccCCCCCcc---cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCC
Confidence 7776654211 0101233567899999999999999975323458999999999999999999998765555789999
Q ss_pred CCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008351 503 PQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPATRLPPPPADLPQC 569 (569)
Q Consensus 503 p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 569 (569)
|++|||+.||++||++|||++||||+|+|||||+||+..||+++|.+.++.+...+++++|+.+|+|
T Consensus 473 P~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999998888788999999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.4e-106 Score=860.29 Aligned_cols=520 Identities=26% Similarity=0.408 Sum_probs=422.0
Q ss_pred cccceEEEEEEEEEEEeccCc--eeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCC
Q 008351 21 ASAAIVEHSFHVKNLTIGRLC--RQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNM 98 (569)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~ 98 (569)
|.+.+++|+|+|++..+++|| ..+.+++|||++|||+|++++||+|+|+|+|+++++++|||||++|..++|+||+++
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~ 102 (596)
T PLN00044 23 AGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG 102 (596)
T ss_pred cCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC
Confidence 567889999999999999999 557899999999999999999999999999999999999999999999999999988
Q ss_pred cccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCC-CceeEEeeeeeccCHHHHHH
Q 008351 99 ITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPD-KEVPILLGEWWNANVVDVEN 176 (569)
Q Consensus 99 ~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d-~e~~l~l~d~~~~~~~~~~~ 176 (569)
|||||+||++|+|+|++++++||||||+|...|++ ||+|+|||++++..++|+..++ +|.+|+|+||++.+..++ .
T Consensus 103 -TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~ 180 (596)
T PLN00044 103 -TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-R 180 (596)
T ss_pred -CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-H
Confidence 99999999999999999669999999999999987 9999999999876666665444 799999999999886654 3
Q ss_pred HHHhcCCCCCCCceEEEcCcCCCC-CCCCCC--CCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC
Q 008351 177 QAQITGGAPNISDAYTINGKPGDL-YPCSQN--PNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYT 253 (569)
Q Consensus 177 ~~~~~g~~~~~~~~~liNG~~~~~-~~~~~~--~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~ 253 (569)
.....|.....++.++|||+ +.+ ++|+.. ....+.++|++|++|||||||++....+.|+|+||+|+|||+||.++
T Consensus 181 ~~l~~g~~~~~~d~~lING~-g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAF-GPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHhcCCCCCCCCceEEccc-CccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 44445555567899999999 543 455421 12346899999999999999999999999999999999999999999
Q ss_pred CceEeeEEEEcCCcEEEEEEEeCCCCc-eeEEEeee-cccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCC-CCCCcc
Q 008351 254 DPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARA-YASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPA-FNDTPT 330 (569)
Q Consensus 254 ~p~~~d~v~l~pgeR~dv~v~~~~~~G-~y~l~~~~-~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~ 330 (569)
+|+.+|+|.|++||||||+|++++.++ +|||++.. +..+. .++.....|||+|.++........|..|. ++++..
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~--~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~ 337 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA--VVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAF 337 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc--cccCcceeEEEEECCCCCCCCCCCCCCCcccCCchh
Confidence 999999999999999999999998765 89999864 22222 23456788999998864322112455453 555544
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceEEEEEEeccc-ccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcccC
Q 008351 331 AHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLAL-DRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVG 409 (569)
Q Consensus 331 ~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~ 409 (569)
..++...++.+..++.+.+.|...+....+.+.... ..|.....| .+++.|++||.+|..|+ .|+|.+++.+.+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~s~Nnvsf~~p~-~p~L~a~~~~~~ 412 (596)
T PLN00044 338 SINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI----DGKLRATLNEISYIAPS-TPLMLAQIFNVP 412 (596)
T ss_pred hhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc----CCeEEEEECcccCCCCC-CcchhhhhccCC
Confidence 444444555443333333344444443333332111 111001111 13689999999999997 888878777778
Q ss_pred CccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcC
Q 008351 410 GIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNY 489 (569)
Q Consensus 410 g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 489 (569)
|.++.+|++.||... ...++.++.+++|++|||+|+|... ..||||||||+|+||++|.|.|
T Consensus 413 gv~~~~fp~~pp~~~---------------~~~~t~v~~~~~n~~VeiV~qn~~~---~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 413 GVFKLDFPNHPMNRL---------------PKLDTSIINGTYKGFMEIIFQNNAT---NVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CcccCCCCCCCCccc---------------cccCceEEEcCCCCEEEEEEeCCCC---CCCCeeEcCccEEEEeecCCCC
Confidence 988888888777411 1235678899999999999999643 6999999999999999999999
Q ss_pred CcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCC-CCCCCCCCCCCCC
Q 008351 490 NAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTP-ATRLPPPPADLPQ 568 (569)
Q Consensus 490 ~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~~~~ 568 (569)
+++ +...||+.||++||||.||++||++|||++||||+|+|||||+.|...||.++|.|.++.+. .+++++||++++.
T Consensus 475 ~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~ 553 (596)
T PLN00044 475 TDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIF 553 (596)
T ss_pred CCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCc
Confidence 975 55689999999999999999999999999999999999999999999999999999999876 7899999999999
Q ss_pred C
Q 008351 569 C 569 (569)
Q Consensus 569 c 569 (569)
|
T Consensus 554 C 554 (596)
T PLN00044 554 C 554 (596)
T ss_pred c
Confidence 9
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=9.8e-105 Score=842.13 Aligned_cols=502 Identities=27% Similarity=0.437 Sum_probs=406.3
Q ss_pred HHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCC
Q 008351 12 SVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSP 91 (569)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~ 91 (569)
++.++++..|.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~ 94 (543)
T PLN02991 15 LLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNS 94 (543)
T ss_pred HHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCc
Confidence 33345555567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccC
Q 008351 92 WADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNAN 170 (569)
Q Consensus 92 ~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~ 170 (569)
||||+++ +||||+||++|+|+|++++++||||||+|...++. ||+|+|||++++..+.|+..+|+|++++|+||+++.
T Consensus 95 ~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~ 173 (543)
T PLN02991 95 YQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTN 173 (543)
T ss_pred cccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCC
Confidence 9999998 99999999999999999668999999999998877 999999999887666666678899999999999988
Q ss_pred HHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecC
Q 008351 171 VVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDA 250 (569)
Q Consensus 171 ~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG 250 (569)
...+... ...+.....+|.+|||||. ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||
T Consensus 174 ~~~~~~~-~~~~~~~~~~d~~liNG~~-----------~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG 241 (543)
T PLN02991 174 HKDLRAQ-LDNGGKLPLPDGILINGRG-----------SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEG 241 (543)
T ss_pred HHHHHHH-hhcCCCCCCCCEEEEccCC-----------CCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCC
Confidence 6665433 3344445678999999992 346899999999999999999999999999999999999999
Q ss_pred CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcc
Q 008351 251 SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPT 330 (569)
Q Consensus 251 ~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~ 330 (569)
.+++|..++++.|++||||||+|++++.+|+||+++...... ......|||+|+++..+.....|..|. +...
T Consensus 242 ~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~ 314 (543)
T PLN02991 242 THTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVSGPIPDGPI--QLSW 314 (543)
T ss_pred ccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCCCCCCCCCc--cccc
Confidence 999999999999999999999999999899999998763221 224578999999864321111232221 1111
Q ss_pred cc----ccccccCCCCCCCCCCCCCCCC--------ceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCc
Q 008351 331 AH----KFYSNLTGLTDGPHWVPVPRQV--------DKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSL 398 (569)
Q Consensus 331 ~~----~~~~~l~~l~~~~~~~~~p~~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ 398 (569)
.. .....+.+. .+...|... ++.+.+...+. . ..+++.|++||.+|..|+ .
T Consensus 315 ~~~~~~~~~~~l~p~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~----~~g~~~~~iN~~s~~~p~-~ 377 (543)
T PLN02991 315 SFDQARAIKTNLTAS----GPRPNPQGSYHYGKINITRTIRLANSAG--------N----IEGKQRYAVNSASFYPAD-T 377 (543)
T ss_pred cccchhhhhhcccCC----CCCCCCCccccccccccceeEEEeeccc--------c----cCceEEEEECCCccCCCC-C
Confidence 11 111222221 122222221 22121211111 0 123578999999999886 7
Q ss_pred hhhhhhhcccCCccCCC-CCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecC
Q 008351 399 SLLQAFFFNVGGIYTPN-FPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGF 477 (569)
Q Consensus 399 ~~~~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~ 477 (569)
|+|.+++.+.+|.++.+ +++.+|.. . ....+.++.+++|++|||+|+|... ..||||||||
T Consensus 378 p~L~~~~~~~~g~~~~~~~~~~~~~~-----~----------~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh 439 (543)
T PLN02991 378 PLKLADYFKIAGVYNPGSIPDQPTNG-----A----------IFPVTSVMQTDYKAFVEIVFENWED---IVQTWHLDGY 439 (543)
T ss_pred ChhhhhhhcccCccccccccccCCCC-----c----------cccCCcEEEcCCCCEEEEEEeCCCC---CCCCeeeCCc
Confidence 88877777777777554 44444320 0 1223567899999999999999653 6999999999
Q ss_pred cEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCC
Q 008351 478 DFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPAT 557 (569)
Q Consensus 478 ~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~ 557 (569)
+||||++|.|.|++. +...||+.||++|||+.||++||++|||++||||+|+|||||..|+..||.+++.|.++.+..+
T Consensus 440 ~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~ 518 (543)
T PLN02991 440 SFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLR 518 (543)
T ss_pred ceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccc
Confidence 999999999999976 5567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 008351 558 RLPPPPADLPQC 569 (569)
Q Consensus 558 ~~~~~p~~~~~c 569 (569)
+++++|.++|+|
T Consensus 519 ~~~~~P~~~~~C 530 (543)
T PLN02991 519 DEYLIPKNALLC 530 (543)
T ss_pred cccCCCcccCcc
Confidence 999999999999
No 4
>PLN02835 oxidoreductase
Probab=100.00 E-value=6.4e-104 Score=840.68 Aligned_cols=509 Identities=25% Similarity=0.384 Sum_probs=399.6
Q ss_pred HHHHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccC
Q 008351 10 FASVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLL 89 (569)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~ 89 (569)
+|.+..+++..+.+++|+|+|+|++...++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||++|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~ 93 (539)
T PLN02835 14 LAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRK 93 (539)
T ss_pred HHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCC
Confidence 33343444445667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeec
Q 008351 90 SPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWN 168 (569)
Q Consensus 90 ~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~ 168 (569)
++||||+++ +||||+||++|+|+|++++++||||||||...|++ ||+|+|||+++++.+.++..+|+|++|+++||++
T Consensus 94 ~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~ 172 (539)
T PLN02835 94 NSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYK 172 (539)
T ss_pred CCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeecccc
Confidence 999999999 99999999999999998678999999999988887 9999999987655555666789999999999999
Q ss_pred cCHHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEe
Q 008351 169 ANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSV 248 (569)
Q Consensus 169 ~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~ 248 (569)
+...++.. ....|.....++.+||||+. .+.++|++||+|||||||+|..+.+.|+|+||+|+|||+
T Consensus 173 ~~~~~~~~-~~~~g~~~~~~d~~liNG~~------------~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~ 239 (539)
T PLN02835 173 TSHKTLQQ-RLDSGKVLPFPDGVLINGQT------------QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEV 239 (539)
T ss_pred CCHHHHHH-HhhcCCCCCCCceEEEcccc------------CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEE
Confidence 98766543 33345555678999999993 367999999999999999999999999999999999999
Q ss_pred cCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCC--
Q 008351 249 DASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFN-- 326 (569)
Q Consensus 249 DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~-- 326 (569)
||++++|..+++|.|++||||||+|++++.+|+|||++.....+ ......|+|+|+++.......+|..|...
T Consensus 240 DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~ 314 (539)
T PLN02835 240 EGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTR-----QILTATAVLHYSNSRTPASGPLPALPSGELH 314 (539)
T ss_pred CCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccC-----CCcceEEEEEECCCCCCCCCCCCCCCccccc
Confidence 99999999999999999999999999998889999998542222 12457899999886432221233322210
Q ss_pred -CCccccccccccCCCCCCCCCCC----CCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhh
Q 008351 327 -DTPTAHKFYSNLTGLTDGPHWVP----VPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLL 401 (569)
Q Consensus 327 -~~~~~~~~~~~l~~l~~~~~~~~----~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~ 401 (569)
+..........+.+....+.+.. .....++++.+..... . ..+...|++||.+|..|+ .|++
T Consensus 315 ~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~g~~~w~iN~~s~~~p~-~P~L 381 (539)
T PLN02835 315 WSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-----------L-INGKQRYAVNGVSYVNSD-TPLK 381 (539)
T ss_pred cccchhhccccccCccccCCCCCccccccccCCCceEEEecccc-----------c-cCCeEEEEECCcccCCCC-CChh
Confidence 00000011111211111000000 0011233333322111 0 112568999999998876 6776
Q ss_pred hhhhcccCCccCCCC-CCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEE
Q 008351 402 QAFFFNVGGIYTPNF-PNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFH 480 (569)
Q Consensus 402 ~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~ 480 (569)
.+++.+..|.++... ...++. ...+.++.++.+++|++|||+|+|... ..||||||||+||
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~t~~~~~~~~~~Veivi~N~~~---~~HP~HLHGh~F~ 443 (539)
T PLN02835 382 LADYFGIPGVFSVNSIQSLPSG---------------GPAFVATSVMQTSLHDFLEVVFQNNEK---TMQSWHLDGYDFW 443 (539)
T ss_pred hhhhhcCCCccccCccccCCCC---------------CccccCCeEEEcCCCCEEEEEEECCCC---CCCCCCCCCccEE
Confidence 666555455554321 111110 002345678899999999999999754 6899999999999
Q ss_pred EEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCCCCC
Q 008351 481 VLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPATRLP 560 (569)
Q Consensus 481 Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~ 560 (569)
||++|.|.|++. ....+|+.||++||||.||++||++|||++||||+|+|||||++|+..||+++|+|+++.+...+++
T Consensus 444 Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~ 522 (539)
T PLN02835 444 VVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEY 522 (539)
T ss_pred EEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCcccccc
Confidence 999999999865 3456789999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCCC
Q 008351 561 PPPADLPQC 569 (569)
Q Consensus 561 ~~p~~~~~c 569 (569)
++|+++|+|
T Consensus 523 ~~P~~~~~C 531 (539)
T PLN02835 523 DIPDNALLC 531 (539)
T ss_pred CCCcccccc
Confidence 999999999
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.7e-104 Score=838.51 Aligned_cols=509 Identities=24% Similarity=0.374 Sum_probs=408.4
Q ss_pred ccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCc
Q 008351 20 LASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMI 99 (569)
Q Consensus 20 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~ 99 (569)
....++++|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|..++||||+++
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~- 89 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG- 89 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-
Confidence 3456667999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHH
Q 008351 100 TQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQA 178 (569)
Q Consensus 100 tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~ 178 (569)
+||||+||++|+|+|++++++||||||+|...+++ ||+|+|||.++++.+.+++.+|.|++++|+||++.+...+.. .
T Consensus 90 tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~ 168 (536)
T PLN02792 90 TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-I 168 (536)
T ss_pred CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-H
Confidence 89999999999999999668999999999998887 999999999866555666678899999999999988665433 3
Q ss_pred HhcCCC-CCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceE
Q 008351 179 QITGGA-PNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYV 257 (569)
Q Consensus 179 ~~~g~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 257 (569)
...|.. +..+|.+||||+.. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..
T Consensus 169 ~~~g~~~~~~~d~~liNG~~~---------~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 169 LDGGRKLPLMPDGVMINGQGV---------SYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred hhccCcCCCCCCEEEEeccCC---------CCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 334433 33789999999932 13468999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccccc
Q 008351 258 TDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFYSN 337 (569)
Q Consensus 258 ~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 337 (569)
+++|.|++||||||+|++++.+|+|||++.....+. .....|||+|.++....+ ..|..|.+++......+...
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~-----~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~ 313 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA-----KVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQS 313 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCC-----CCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhh
Confidence 999999999999999999988899999988643221 245789999988644322 12333434433333222222
Q ss_pred cCCCCCCCCCCCCCCCCceEEEEEEeccc-ccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcccCCccCCC-
Q 008351 338 LTGLTDGPHWVPVPRQVDKHMFVTVGLAL-DRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPN- 415 (569)
Q Consensus 338 l~~l~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~- 415 (569)
++....++.+..+|+..++...+.+.... ..+. ... .+..+.|++||.+|..|+ .|+|.+++..+.|.++.+
T Consensus 314 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~iN~~s~~~p~-~p~L~a~~~~~~g~~~~~~ 387 (536)
T PLN02792 314 IRTNLTASGPRTNPQGSYHYGKMKISRTLILESS-AAL----VKRKQRYAINGVSFVPSD-TPLKLADHFKIKGVFKVGS 387 (536)
T ss_pred hhhccCCCCCCCCCCcccccceeccceeEEeccc-ccc----cCceeEEEECCcccCCCC-CchhhhhhhccCCCcCccc
Confidence 23332222233344333322112111110 0000 001 123578999999999887 788877766666776553
Q ss_pred CCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCccccc
Q 008351 416 FPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDI 495 (569)
Q Consensus 416 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~ 495 (569)
|++.+|..++ ...++.++.+++|++|||+|+|... ..||||||||+||||++|.|.|++. +.
T Consensus 388 ~~~~p~~~~~--------------~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg~G~G~~~~~-~~ 449 (536)
T PLN02792 388 IPDKPRRGGG--------------MRLDTSVMGAHHNAFLEIIFQNREK---IVQSYHLDGYNFWVVGINKGIWSRA-SR 449 (536)
T ss_pred CccCCcccCC--------------CccCceEEEcCCCCEEEEEEECCCC---CCCCeeeCCCceEEEeecCCCCCcc-cc
Confidence 6766664221 1234578899999999999999643 6899999999999999999999874 55
Q ss_pred ccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008351 496 KKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPATRLPPPPADLPQC 569 (569)
Q Consensus 496 ~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 569 (569)
..||+.||++||||.||++||++|||++||||+|+||||+..|+..||.++|.|.++.+..+++++||++++.|
T Consensus 450 ~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 450 REYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred cccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999889999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.9e-103 Score=837.90 Aligned_cols=505 Identities=25% Similarity=0.411 Sum_probs=399.0
Q ss_pred cccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcc
Q 008351 21 ASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMIT 100 (569)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~t 100 (569)
+.+++++|+|+|++...++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++||||+|+ |
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHH
Q 008351 101 QCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQ 179 (569)
Q Consensus 101 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 179 (569)
||||+||++|+|+|++.+++||||||+|...|+. ||+|+|||++++..+.++..+|+|++++++||+++....+.. ..
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-FL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-HH
Confidence 9999999999999998568999999999998887 999999999887666667677899999999999988666433 34
Q ss_pred hcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEee
Q 008351 180 ITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTD 259 (569)
Q Consensus 180 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d 259 (569)
..|.....++.+||||+.+..+. ...+.++|++||+|||||||+|....+.|+|+||+|+|||+||++++|..++
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~-----~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~ 255 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDG-----KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYD 255 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCC-----CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCccee
Confidence 44544456899999999543221 1347899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccc----ccc
Q 008351 260 VVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAH----KFY 335 (569)
Q Consensus 260 ~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~----~~~ 335 (569)
+|.|++||||||+|++++++|+|||++.....+ ......|||+|.++........|..+. +..... .+.
T Consensus 256 ~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~ 328 (552)
T PLN02354 256 SLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK-----KVLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFR 328 (552)
T ss_pred EEEEccCceEEEEEECCCCCCcEEEEEeccccC-----CCccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhh
Confidence 999999999999999998899999998742221 234578999998865432222232211 110011 111
Q ss_pred cccCCCCCCCCCCCC----CCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhccc-CC
Q 008351 336 SNLTGLTDGPHWVPV----PRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNV-GG 410 (569)
Q Consensus 336 ~~l~~l~~~~~~~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~-~g 410 (569)
..+.+....+.+... ....++.+.+...... ..+.+.|.+||.+|..|+ .|+|.+++.+. .|
T Consensus 329 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~iNn~s~~~p~-~P~L~~~~~~~~~g 395 (552)
T PLN02354 329 WNLTASAARPNPQGSYHYGKINITRTIKLVNSASK------------VDGKLRYALNGVSHVDPE-TPLKLAEYFGVADK 395 (552)
T ss_pred hcccccccCCCCCCccccccccccceEEEeccccc------------CCceEEEEECCccCCCCC-CChHHhhhhcccCC
Confidence 112211111101000 0112233322221110 123578999999999887 77776655433 35
Q ss_pred ccCCC-CCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcC
Q 008351 411 IYTPN-FPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNY 489 (569)
Q Consensus 411 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 489 (569)
.++.+ ++..+|..++ . ...++.++.++.|++|||+|+|... ..||||||||+||||++|.|.|
T Consensus 396 ~~~~~~~~~~pp~~~~--~-----------~~~~~~v~~~~~~~~VeiVi~n~~~---~~HP~HLHGh~F~Vlg~G~G~~ 459 (552)
T PLN02354 396 VFKYDTIKDNPPAKIT--K-----------IKIQPNVLNITFRTFVEIIFENHEK---SMQSWHLDGYSFFAVAVEPGTW 459 (552)
T ss_pred ccccCccccCCccccC--c-----------cccCCeeEEcCCCCEEEEEEeCCCC---CCCCCcCCCccEEEEeecCCCC
Confidence 55433 3444443211 0 2334578899999999999999753 6999999999999999999999
Q ss_pred CcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008351 490 NAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPATRLPPPPADLPQC 569 (569)
Q Consensus 490 ~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 569 (569)
+++ ....+|+.||++|||+.||++||++|||++||||+|+|||||..|+..||.+.|.|.++++..++++++|.+.+.|
T Consensus 460 ~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 460 TPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred Ccc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 875 3567899999999999999999999999999999999999999999999999999999888888888899999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.5e-102 Score=827.26 Aligned_cols=500 Identities=26% Similarity=0.422 Sum_probs=389.9
Q ss_pred cccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcc
Q 008351 21 ASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMIT 100 (569)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~t 100 (569)
|.+++|+|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++..++||||+|+ |
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-t 100 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-T 100 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-C
Confidence 347899999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHH
Q 008351 101 QCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQ 179 (569)
Q Consensus 101 q~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~ 179 (569)
||||+||++|+|+|++++++||||||||...|+. ||+|+|||+++++.+.+++.+|.|+.|+|+||++.+...+.. ..
T Consensus 101 QcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 179 (545)
T PLN02168 101 NCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SL 179 (545)
T ss_pred cCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hh
Confidence 9999999999999999668999999999998887 999999999987666666678899999999999987544332 23
Q ss_pred hcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEee
Q 008351 180 ITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTD 259 (569)
Q Consensus 180 ~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d 259 (569)
..|.....++.+||||+.. ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..++
T Consensus 180 ~~g~~~~~~d~~liNG~~~----------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~ 249 (545)
T PLN02168 180 DNGHSLPNPDGILFNGRGP----------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYS 249 (545)
T ss_pred hcCCCCCCCCEEEEeccCC----------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceee
Confidence 3343345689999999931 346899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcEEEEEEEeCCCC-c---eeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccc
Q 008351 260 VVVIAPGQTTDVLLKADQPV-G---SYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFY 335 (569)
Q Consensus 260 ~v~l~pgeR~dv~v~~~~~~-G---~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 335 (569)
+|.|++||||||+|++++.+ | +|||++.....+. .....|||+|+++.......+|..|..++.....+..
T Consensus 250 ~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~-----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~ 324 (545)
T PLN02168 250 SLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA-----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQA 324 (545)
T ss_pred EEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC-----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchh
Confidence 99999999999999998654 4 8999998743221 2457899999886443211233333333332222222
Q ss_pred cccCCCCCCCCCCCCCCC--------CceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcc
Q 008351 336 SNLTGLTDGPHWVPVPRQ--------VDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFN 407 (569)
Q Consensus 336 ~~l~~l~~~~~~~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~ 407 (569)
.+++....+..+...|.. .++.+.+.... . . ..+...|++||.+|..|+ .|++.+++..
T Consensus 325 ~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~----~~g~~~~~iN~~s~~~p~-~P~l~~~~~~ 391 (545)
T PLN02168 325 LSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------L----SSGKLRYTINGVSFVYPG-TPLKLVDHFQ 391 (545)
T ss_pred hhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c------c----cCceEEEEECCCccCCCC-Cchhhhhhcc
Confidence 222211111111112211 11222111100 0 0 123578999999999987 6666555443
Q ss_pred cCCccCCC-CCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCc
Q 008351 408 VGGIYTPN-FPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGF 486 (569)
Q Consensus 408 ~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~ 486 (569)
..+....+ ++..+|.. ....++.++.+++|++|||+|+|... ..||||||||+||||++|.
T Consensus 392 ~~~~~~~~~~~~~p~~~---------------~~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg~g~ 453 (545)
T PLN02168 392 LNDTIIPGMFPVYPSNK---------------TPTLGTSVVDIHYKDFYHIVFQNPLF---SLESYHIDGYNFFVVGYGF 453 (545)
T ss_pred cccccccCCCccCCCcC---------------ccccCceEEEecCCCEEEEEEeCCCC---CCCCeeeCCCceEEEECCC
Confidence 33333222 44333320 01223577899999999999999753 6999999999999999999
Q ss_pred CcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCC-----C-CCCCC
Q 008351 487 GNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPT-----P-ATRLP 560 (569)
Q Consensus 487 g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~-----~-~~~~~ 560 (569)
|.|++. ....+|+.||++|||+.||++||++|||++||||+|+|||||.+|...||.+.+.|++++. . .++++
T Consensus 454 g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~ 532 (545)
T PLN02168 454 GAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDEN 532 (545)
T ss_pred CCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccccccc
Confidence 999875 3457899999999999999999999999999999999999999999998888888864433 2 46688
Q ss_pred CCCCCCCCC
Q 008351 561 PPPADLPQC 569 (569)
Q Consensus 561 ~~p~~~~~c 569 (569)
++|+++++|
T Consensus 533 ~~P~~~~~c 541 (545)
T PLN02168 533 PIPGNVIRC 541 (545)
T ss_pred CCChhhccc
Confidence 999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-102 Score=819.09 Aligned_cols=540 Identities=49% Similarity=0.845 Sum_probs=477.9
Q ss_pred HHHHHHHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeeccc
Q 008351 7 LLAFASVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIF 86 (569)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~ 86 (569)
++.++++++++...|.++++.|+|++++..+.++|.+++++++||++|||+|++++||+|+|+|+|.++++++|||||++
T Consensus 10 ~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~ 89 (563)
T KOG1263|consen 10 LFLCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVR 89 (563)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccc
Confidence 45556666677778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeee
Q 008351 87 QLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGE 165 (569)
Q Consensus 87 ~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d 165 (569)
|..+.|+|| +.+|||||+||++|+|+|+++++.||||||+|...+++ |++|+|||+++...++|++.+|+|++|+++|
T Consensus 90 q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~d 168 (563)
T KOG1263|consen 90 QRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGD 168 (563)
T ss_pred ccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEe
Confidence 999999999 89999999999999999999779999999999999998 9999999999988778888999999999999
Q ss_pred eecc-CHHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeE
Q 008351 166 WWNA-NVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFT 244 (569)
Q Consensus 166 ~~~~-~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 244 (569)
|+.+ ....+...+...+..+..+|..+|||++|..++| .+.++|++||+|||||+|+|....+.|+|.+|+|+
T Consensus 169 W~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~lt 242 (563)
T KOG1263|consen 169 WYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLT 242 (563)
T ss_pred eccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEE
Confidence 9995 7777766666666666669999999999888888 37999999999999999999999999999999999
Q ss_pred EEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCC---CCCCC
Q 008351 245 VVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSAN---PLMPA 321 (569)
Q Consensus 245 via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~---~~~p~ 321 (569)
||++||.+++|..+++|.|.||||++|+|+++|.+++|+|.+..+..+....+ .....++++|.++..... +..+.
T Consensus 243 vVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~ 321 (563)
T KOG1263|consen 243 VVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPF 321 (563)
T ss_pred EEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCccccc
Confidence 99999999999999999999999999999999999999999998776553233 667899999998443221 22334
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhh
Q 008351 322 LPAFNDTPTAHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLL 401 (569)
Q Consensus 322 ~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~ 401 (569)
+|..++...+..+...++.+.....+.+.|+..++....+++.+...|+... .++++..+++|+.+|..|++..++
T Consensus 322 ~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l 397 (563)
T KOG1263|consen 322 LPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLL 397 (563)
T ss_pred CCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhh
Confidence 5555666666677777888877777888888988888877777665554221 346688999999999999965677
Q ss_pred hhhhcccCCccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEE
Q 008351 402 QAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHV 481 (569)
Q Consensus 402 ~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~V 481 (569)
..++....|.++.+|+..||..+++.+ .+.++.++.++++++||++++|.+......||||||||.|+|
T Consensus 398 ~~~~~~~~~~~~~d~p~~P~~~~~~~~-----------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~V 466 (563)
T KOG1263|consen 398 AAYFKNIPGYFTNDFPDKPPIKFDYTG-----------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYV 466 (563)
T ss_pred hhhhccCCccccCccCCCCccccCCcc-----------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEE
Confidence 888888888888899998888777776 256789999999999999999988766788999999999999
Q ss_pred EEeCcCcCCccccc-ccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCCCCC
Q 008351 482 LAQGFGNYNAARDI-KKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPATRLP 560 (569)
Q Consensus 482 l~~g~g~~~~~~~~-~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~ 560 (569)
++.|.|.|++..+. ..||+.+|+.||||.||||||++|||.|||||+|+||||+.+|...||.++|+|.++.+..+++.
T Consensus 467 vg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~ 546 (563)
T KOG1263|consen 467 VGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEY 546 (563)
T ss_pred EEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCC
Confidence 99999999995455 78999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCCCCCC
Q 008351 561 PPPADLPQC 569 (569)
Q Consensus 561 ~~p~~~~~c 569 (569)
++|.++++|
T Consensus 547 ~~P~~~~~c 555 (563)
T KOG1263|consen 547 PPPKNLPKC 555 (563)
T ss_pred CCCCCcccc
Confidence 999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.6e-98 Score=801.89 Aligned_cols=519 Identities=32% Similarity=0.555 Sum_probs=387.2
Q ss_pred HhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEeeecccccCCCCCC
Q 008351 16 VSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHWHGIFQLLSPWAD 94 (569)
Q Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~D 94 (569)
++-..+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++.+++|+|
T Consensus 14 ~~~~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~D 93 (574)
T PLN02191 14 VLTHTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWAD 93 (574)
T ss_pred HHHHhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCcccc
Confidence 334445678999999999999999999999999999999999999999999999999997 7899999999999999999
Q ss_pred CCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHH
Q 008351 95 GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVD 173 (569)
Q Consensus 95 G~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~ 173 (569)
|+|+++||+|+||++|+|+|++ .++||||||||...+.. ||+|+|||+++.+...+. .+|+|++|+|+||++....+
T Consensus 94 Gv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~ 171 (574)
T PLN02191 94 GAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPS 171 (574)
T ss_pred CCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHH
Confidence 9999999999999999999999 89999999999998887 999999999765433333 47899999999999986543
Q ss_pred HHHHHHhcC-CCCCCCceEEEcCcCCCCCCCCCC------------------CCcceEEEEEcCcEEEEEEEecCCCCeE
Q 008351 174 VENQAQITG-GAPNISDAYTINGKPGDLYPCSQN------------------PNQIYKLKVVEGKTYLLRIINAALNNQL 234 (569)
Q Consensus 174 ~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~~------------------~~~~~~~~v~~G~~~rlRliN~~~~~~~ 234 (569)
......... .....++.+||||+ +. +.|... ......++|++||+|||||||+|+.+.+
T Consensus 172 ~~~~~~~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~ 249 (574)
T PLN02191 172 QELGLSSKPMRWIGEAQSILINGR-GQ-FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASL 249 (574)
T ss_pred HHHhhccCCCCcCCCCCceEECCC-CC-CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeE
Confidence 322221111 11245789999998 53 445311 0122369999999999999999999999
Q ss_pred EEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCC-ceeEEEeeecccCCCCCCCCcceEEEEEEcCCCC
Q 008351 235 FFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYASAPQIPFDNTTTRGIVVYDGAAS 313 (569)
Q Consensus 235 ~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~ 313 (569)
.|+|+||+|+|||+||.+++|+++++|.|++||||||+|++++++ ++||||+.....+. ......|||+|.+...
T Consensus 250 ~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~----~~~~~~ail~Y~~~~~ 325 (574)
T PLN02191 250 NLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP----NTTQALTILNYVTAPA 325 (574)
T ss_pred EEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC----CCCCceEEEEECCCCC
Confidence 999999999999999999999999999999999999999999876 58999987644332 1223469999987654
Q ss_pred CCCCC--CCCCCCCCCCccccccccccCCCCCCCCCCCCC-CCCceEEEEEEecccccccccccccCCCCCeeEEeecCc
Q 008351 314 SANPL--MPALPAFNDTPTAHKFYSNLTGLTDGPHWVPVP-RQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNH 390 (569)
Q Consensus 314 ~~~~~--~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~ 390 (569)
+..+. .|..|.+.+........ ...+.....+ ..| ...+..+.+.... . ......|.+|+.
T Consensus 326 ~~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~-~~p~~~~~~~~~~~~~~--~-----------~~~~~~~~~n~~ 389 (574)
T PLN02191 326 SKLPSSPPPVTPRWDDFERSKNFS--KKIFSAMGSP-SPPKKYRKRLILLNTQN--L-----------IDGYTKWAINNV 389 (574)
T ss_pred CCCCCCCCCCCCcccccchhhccc--ccccccccCC-CCCCcccceEEEecccc--e-----------eCCeEEEEECcc
Confidence 32111 12223332222111111 1111110001 122 2234444332211 0 122458999999
Q ss_pred eeecCCCchhhhhhhcccCCccCCCCCCCC-CCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCC---C
Q 008351 391 SFQFPTSLSLLQAFFFNVGGIYTPNFPNNP-PLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALI---A 466 (569)
Q Consensus 391 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~---~ 466 (569)
+|..|. .|+|...+.+..+.+..+.+... +..|+..+.. .......++.++.++.|++|||+|+|.... .
T Consensus 390 s~~~p~-~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~ 463 (574)
T PLN02191 390 SLVTPA-TPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPP-----PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVV 463 (574)
T ss_pred cCcCCC-cchHHHHhhccCcccccCCCcccccccccccCCC-----ccccccccceeEEecCCCEEEEEEECCCcccCCC
Confidence 998886 66666655554444433322211 1112211110 000123355788999999999999996411 2
Q ss_pred CCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEE
Q 008351 467 VENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATA 546 (569)
Q Consensus 467 ~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~ 546 (569)
...||||||||+||||++|.|.|+++.+...+|+.||++|||+.||++||++|||++||||+|+|||||+||+..||+++
T Consensus 464 ~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~ 543 (574)
T PLN02191 464 SEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVV 543 (574)
T ss_pred CCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEE
Confidence 47999999999999999999999975555678999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCC
Q 008351 547 FVVENGPTPATRLPPPPADLPQC 569 (569)
Q Consensus 547 ~~V~~~~~~~~~~~~~p~~~~~c 569 (569)
|..+. ++++++|..++.|
T Consensus 544 ~~e~~-----~~~~~~p~~~~~C 561 (574)
T PLN02191 544 FAEGL-----NRIGKIPDEALGC 561 (574)
T ss_pred EecCh-----hhccCCCcchhhh
Confidence 97432 3345578888998
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.1e-97 Score=801.76 Aligned_cols=524 Identities=33% Similarity=0.568 Sum_probs=395.9
Q ss_pred HHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCC-CCceeEeeecccccCCCCC
Q 008351 15 IVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNES-PYNITIHWHGIFQLLSPWA 93 (569)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~ 93 (569)
.++...+.+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+++|+
T Consensus 14 ~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~ 93 (566)
T PLN02604 14 VLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWF 93 (566)
T ss_pred HHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccc
Confidence 444456778999999999999999999999999999999999999999999999999998 5899999999999999999
Q ss_pred CCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHH
Q 008351 94 DGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVV 172 (569)
Q Consensus 94 DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~ 172 (569)
||+++++||+|+||++++|+|++ .++||||||||...+.. ||+|+|||+++.+...++ .+|.|.+|+|+||++....
T Consensus 94 DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~ 171 (566)
T PLN02604 94 DGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTY 171 (566)
T ss_pred cCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHH
Confidence 99999999999999999999999 89999999999988876 999999999886554555 4788999999999998876
Q ss_pred HHHHHHHhcC-CCCCCCceEEEcCcCCCCCCCCC-------------CC--CcceEEEEEcCcEEEEEEEecCCCCeEEE
Q 008351 173 DVENQAQITG-GAPNISDAYTINGKPGDLYPCSQ-------------NP--NQIYKLKVVEGKTYLLRIINAALNNQLFF 236 (569)
Q Consensus 173 ~~~~~~~~~g-~~~~~~~~~liNG~~~~~~~~~~-------------~~--~~~~~~~v~~G~~~rlRliN~~~~~~~~~ 236 (569)
+......... ....+++..+|||+ |. +.|+. .. ...+.++|++|++|||||||+|+.+.+.|
T Consensus 172 ~~~~~~~~~~~~~~~~~d~~liNG~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~ 249 (566)
T PLN02604 172 EQALGLSSIPFDWVGEPQSLLIQGK-GR-YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSF 249 (566)
T ss_pred HHHHhhccCCCccCCCCCceEEcCC-CC-CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEE
Confidence 5443322111 11245789999999 53 45531 00 13458999999999999999999999999
Q ss_pred EEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCc-eeEEEeeecccCCCCCCCCcceEEEEEEcCCCCC-
Q 008351 237 KIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARAYASAPQIPFDNTTTRGIVVYDGAASS- 314 (569)
Q Consensus 237 ~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G-~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~- 314 (569)
+|+||+|+|||+||.+++|++++.|.|++||||||+|++++++| +||||+.....+. +.....|||+|++....
T Consensus 250 sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~----~~~~~~aIL~Y~~~~~~~ 325 (566)
T PLN02604 250 QIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN----TTPPGLAIFNYYPNHPRR 325 (566)
T ss_pred EECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC----CCcceeEEEEECCCCCCC
Confidence 99999999999999999999999999999999999999998775 8999987644331 23457899999864321
Q ss_pred CCC-CCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceee
Q 008351 315 ANP-LMPALPAFNDTPTAHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQ 393 (569)
Q Consensus 315 ~~~-~~p~~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~ 393 (569)
.++ ..+..+.+++..........+..+.. .+...+...|+++.+...... .++.+.|.+|+.+|.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~~w~in~~~~~ 391 (566)
T PLN02604 326 SPPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYRRWSVNNVSFN 391 (566)
T ss_pred CCCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeEEEEECcccCC
Confidence 111 11111122221111111111111111 111223445666554332211 123578999999998
Q ss_pred cCCCchhhhhhhcccCCccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCC---CCCCC
Q 008351 394 FPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALI---AVENH 470 (569)
Q Consensus 394 ~p~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~---~~~~H 470 (569)
.|. .|+|...+....|.++.+ .++..+.+..........+.....+..++.++.|++||++|+|.... ....|
T Consensus 392 ~p~-~p~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~H 467 (566)
T PLN02604 392 LPH-TPYLIALKENLTGAFDQT---PPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETH 467 (566)
T ss_pred CCC-CchhHhhhhcCCCcccCC---CCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCC
Confidence 876 566666555444544321 11211111100000000011123355788999999999999997421 24689
Q ss_pred CeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEe
Q 008351 471 PIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 471 P~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
|||||||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.++
T Consensus 468 P~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~ 547 (566)
T PLN02604 468 PWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG 547 (566)
T ss_pred CEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC
Confidence 99999999999999999998776667899999999999999999999999999999999999999999999999999865
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q 008351 551 NGPTPATRLPPPPADLPQC 569 (569)
Q Consensus 551 ~~~~~~~~~~~~p~~~~~c 569 (569)
.++++++|..+++|
T Consensus 548 -----~~~~~~~p~~~~~C 561 (566)
T PLN02604 548 -----IERVGKLPSSIMGC 561 (566)
T ss_pred -----hhhccCCCCCcCcc
Confidence 24577889999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.4e-96 Score=791.47 Aligned_cols=511 Identities=32% Similarity=0.573 Sum_probs=386.7
Q ss_pred eEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEeeecccccCCCCCCCCCCccccc
Q 008351 25 IVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHWHGIFQLLSPWADGPNMITQCP 103 (569)
Q Consensus 25 ~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~tq~~ 103 (569)
+|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|++. ++++|||||+++.+++||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999985 8999999999999999999999999999
Q ss_pred CCCCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHhcC
Q 008351 104 ITPGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITG 182 (569)
Q Consensus 104 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g 182 (569)
|+||++++|+|++ .++||||||||...+.. ||+|+|||+++.++..++ .+|+|++|+|+||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 89999999999988887 999999999886544444 47899999999999987654433222111
Q ss_pred -CCCCCCceEEEcCcCCCCCCCCCC-----------------CCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeE
Q 008351 183 -GAPNISDAYTINGKPGDLYPCSQN-----------------PNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFT 244 (569)
Q Consensus 183 -~~~~~~~~~liNG~~~~~~~~~~~-----------------~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 244 (569)
.....++.++|||+ ++ ++|... ......++|++|++|||||||+|+.+.+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGR-GQ-FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCC-CC-CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 11245789999999 53 344321 01234689999999999999999999999999999999
Q ss_pred EEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCC-ceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCC--CCCC
Q 008351 245 VVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANP--LMPA 321 (569)
Q Consensus 245 via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~--~~p~ 321 (569)
|||+||++++|+.+++|.|++||||||+|++++.+ |+||||+.....+. ......|||+|.+...+..+ ..|.
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~----~~~~~~aiL~Y~~~~~~~~p~~~~~~ 312 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP----NTPPGLTVLNYYPNSPSRLPPTPPPV 312 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC----CCccEEEEEEECCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999766 48999987654321 23357899999875443211 1122
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhh
Q 008351 322 LPAFNDTPTAHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLL 401 (569)
Q Consensus 322 ~p~~~~~~~~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~ 401 (569)
.|.+.+........ +..+.... ...++..+|+++++...... ....+.|.+|+.+|..|. .|+|
T Consensus 313 ~p~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~p~-~p~l 376 (541)
T TIGR03388 313 TPAWDDFDRSKAFS--LAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTLPH-TPYL 376 (541)
T ss_pred CCCccccchhhccc--hhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCCCC-ccHH
Confidence 33333221111111 11111111 11233456666654332110 122467999999998776 5666
Q ss_pred hhhhcccCCccCCCCC-CCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCC---CCCCCCeeeecC
Q 008351 402 QAFFFNVGGIYTPNFP-NNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALI---AVENHPIHIHGF 477 (569)
Q Consensus 402 ~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~---~~~~HP~HlHG~ 477 (569)
...+.+..+.+..+.+ ...+..|+... +..+...+.++.++.++.|++||++|+|...+ ....||||||||
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh 451 (541)
T TIGR03388 377 GSLKYNLLNAFDQKPPPENYPRDYDIFK-----PPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGH 451 (541)
T ss_pred HHHhhcCCccccCCCCcccccccccccC-----CCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCC
Confidence 5554433332221110 01111111110 00011123456788999999999999996421 246899999999
Q ss_pred cEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecCCCCCC
Q 008351 478 DFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGPTPAT 557 (569)
Q Consensus 478 ~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~ 557 (569)
+||||++|.|.|+++.+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.++ .+
T Consensus 452 ~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~ 526 (541)
T TIGR03388 452 DFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VE 526 (541)
T ss_pred ceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----cc
Confidence 9999999999998765566899999999999999999999999999999999999999999999999999865 24
Q ss_pred CCCCCCCCCCCC
Q 008351 558 RLPPPPADLPQC 569 (569)
Q Consensus 558 ~~~~~p~~~~~c 569 (569)
+++++|.++++|
T Consensus 527 ~~~~~P~~~~~C 538 (541)
T TIGR03388 527 KVGKLPKEALGC 538 (541)
T ss_pred ccCCCCccccCC
Confidence 567789999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.8e-94 Score=768.08 Aligned_cols=492 Identities=28% Similarity=0.472 Sum_probs=374.0
Q ss_pred EEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEeeecccccCCCCCCCCCCcccccC
Q 008351 26 VEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHWHGIFQLLSPWADGPNMITQCPI 104 (569)
Q Consensus 26 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~tq~~i 104 (569)
-.|+|+|++..++++|+++.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++..++||||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred CCCCeeEEEEEeC-CCCcceeEecchhhhhccceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHhcCC
Q 008351 105 TPGRSYTYKFNVI-NQEGTLWWHGHVSLLRATVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGG 183 (569)
Q Consensus 105 ~pG~~~~y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~ 183 (569)
+||++|+|+|+++ +++||||||||...|+.||+|+|||+++++.++ .+|+|++|+|+||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999984 589999999999888889999999998764332 468899999999999987765543332221
Q ss_pred -CCCCCceEEEcCcCCCCCCCC----C-CCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCce-eEEEEecCCCCCce
Q 008351 184 -APNISDAYTINGKPGDLYPCS----Q-NPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHK-FTVVSVDASYTDPY 256 (569)
Q Consensus 184 -~~~~~~~~liNG~~~~~~~~~----~-~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~p~ 256 (569)
....++.+|||||.+.. .|. . ..+..+.++|++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~-~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNK-SFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCccccc-cccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 12456899999994322 211 0 0123578999999999999999999999999999999 99999999999999
Q ss_pred EeeEEEEcCCcEEEEEEEeCCC-------CceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCc
Q 008351 257 VTDVVVIAPGQTTDVLLKADQP-------VGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTP 329 (569)
Q Consensus 257 ~~d~v~l~pgeR~dv~v~~~~~-------~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~ 329 (569)
.+++|.|++||||||+|++++. +|+||||+.....+ +.....|||+|.+...+..+..|..+......
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~-----~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~ 319 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP-----KVYRGYAVLRYRSDKASKLPSVPETPPLPLPN 319 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC-----CcceEEEEEEeCCCCCCCCCCCCCCCCCCccC
Confidence 9999999999999999999964 48999998765432 12457899999876443322222222111100
Q ss_pred cc-cccccccCCCCCCCCC-CCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeec--CCCchhhhhhh
Q 008351 330 TA-HKFYSNLTGLTDGPHW-VPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQF--PTSLSLLQAFF 405 (569)
Q Consensus 330 ~~-~~~~~~l~~l~~~~~~-~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~~~~~~~~ 405 (569)
.. ......+.++.....+ .+.+..+|+++.+.+.+... ...+.+.|.+|+.+|.. +. .|+|...+
T Consensus 320 ~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~----------~~~g~~~~~~N~~s~~~~~~~-~P~L~~~~ 388 (538)
T TIGR03390 320 STYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD----------PLNGRVAWLQNGLSWTESVRQ-TPYLVDIY 388 (538)
T ss_pred cchhhhheeeEecCccccCCCCCCCcCceEEEEEcccccc----------ccCCeEEEEECCcccCCCCCC-CchHHHHh
Confidence 10 0111123333221101 11234577777776664321 01235789999999975 44 56665544
Q ss_pred cccCCccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCC-----CCCCCCeeeecCcEE
Q 008351 406 FNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALI-----AVENHPIHIHGFDFH 480 (569)
Q Consensus 406 ~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~-----~~~~HP~HlHG~~F~ 480 (569)
.+. . +..++ |+ .. .........+.++.++.|++|||+|+|.... ....||||||||+||
T Consensus 389 ~~~---~----~~~~~--~~--~~-----~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~ 452 (538)
T TIGR03390 389 ENG---L----PATPN--YT--AA-----LANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFY 452 (538)
T ss_pred cCC---C----CcCCC--cc--cc-----cccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEE
Confidence 321 0 11111 11 00 0000012234578899999999999996411 247999999999999
Q ss_pred EEEeCcCcCCcccccccccCCCCCccceEEeC----------CCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEe
Q 008351 481 VLAQGFGNYNAARDIKKFNLVNPQRRNTIAVP----------VGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 481 Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
||++|.|.|++......+++.||++|||+.|| ++||++|||++||||.|+|||||.||+..||+++|.|.
T Consensus 453 vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~ 532 (538)
T TIGR03390 453 DIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFG 532 (538)
T ss_pred EEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeC
Confidence 99999999997655557888999999999996 78999999999999999999999999999999999997
Q ss_pred cCC
Q 008351 551 NGP 553 (569)
Q Consensus 551 ~~~ 553 (569)
+.+
T Consensus 533 ~~~ 535 (538)
T TIGR03390 533 DAE 535 (538)
T ss_pred ChH
Confidence 654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.8e-79 Score=655.15 Aligned_cols=421 Identities=27% Similarity=0.477 Sum_probs=316.1
Q ss_pred EEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCC
Q 008351 26 VEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105 (569)
Q Consensus 26 ~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~ 105 (569)
++|+|++++..+.++|+.+.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++... +||+|+++||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999998754 8999999999999
Q ss_pred CCCeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHh----
Q 008351 106 PGRSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQI---- 180 (569)
Q Consensus 106 pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~---- 180 (569)
||++|+|+|++ .++||||||||...+.. ||+|+|||++++..++ .+|+|++|+|+||++.+..+++.....
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999 89999999999987776 9999999998654333 578999999999998766555332210
Q ss_pred -----------------cCCC----------------C------CCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEE
Q 008351 181 -----------------TGGA----------------P------NISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTY 221 (569)
Q Consensus 181 -----------------~g~~----------------~------~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~ 221 (569)
.|.. . .....+||||+.- ...+.+.+++|++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~---------~~~~~~~v~~G~rv 270 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP---------AGNWTGLFRPGEKV 270 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC---------CCCceEEECCCCEE
Confidence 1100 0 0012378999832 23467899999999
Q ss_pred EEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcc
Q 008351 222 LLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTT 301 (569)
Q Consensus 222 rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~ 301 (569)
||||||+|+.+.+.|+|+||+|+||++||++++|+.++++.|++||||||+|+++ ..|.|+|++...+.. ..
T Consensus 271 RLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~~-------~~ 342 (587)
T TIGR01480 271 RLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDRT-------GY 342 (587)
T ss_pred EEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCCC-------ce
Confidence 9999999999999999999999999999999999999999999999999999987 568999998765432 24
Q ss_pred eEEEEEEcCCCCCCCCCCCCCCC--CCCCcc-c------c---cc------ccc-------------c------------
Q 008351 302 TRGIVVYDGAASSANPLMPALPA--FNDTPT-A------H---KF------YSN-------------L------------ 338 (569)
Q Consensus 302 ~~ail~y~~~~~~~~~~~p~~p~--~~~~~~-~------~---~~------~~~-------------l------------ 338 (569)
..++|++.+......+.++..|. ..+... . . .+ ... +
T Consensus 343 ~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (587)
T TIGR01480 343 ARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASE 422 (587)
T ss_pred EEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccc
Confidence 67788876542211111111000 000000 0 0 00 000 0
Q ss_pred ----------------------------------CCCCCCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeE
Q 008351 339 ----------------------------------TGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFS 384 (569)
Q Consensus 339 ----------------------------------~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (569)
..|... .+...+...++++.+.+. .+..++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~p~r~~~~~L~--------------g~m~~~~ 487 (587)
T TIGR01480 423 PLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL-FPPPDGRAPGREIELHLT--------------GNMERFA 487 (587)
T ss_pred cCCccccccccCcccccCCCCcccccCCcceeehhhcccc-ccccCcCCCCceEEEEEc--------------CCCceeE
Confidence 000000 000000112222222221 1223556
Q ss_pred EeecCceeecCCCchhhhhhhcccCCccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCC
Q 008351 385 ASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTAL 464 (569)
Q Consensus 385 ~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~ 464 (569)
|++||..|.. ...+.++.|+.|+|.|.|.+.
T Consensus 488 wtiNG~~~~~-------------------------------------------------~~pl~v~~Gervri~l~N~t~ 518 (587)
T TIGR01480 488 WSFDGEAFGL-------------------------------------------------KTPLRFNYGERLRVVLVNDTM 518 (587)
T ss_pred EEECCccCCC-------------------------------------------------CCceEecCCCEEEEEEECCCC
Confidence 7777754411 123568999999999999765
Q ss_pred CCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccE
Q 008351 465 IAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLA 544 (569)
Q Consensus 465 ~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~ 544 (569)
+.||||||||.|+|+..+ |. .+.++||+.|+|++.+.++|.+||||.|+||||++.|++.|||
T Consensus 519 ---~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~ 581 (587)
T TIGR01480 519 ---MAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMF 581 (587)
T ss_pred ---CCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCc
Confidence 899999999999998642 11 1347899999999999999999999999999999999999999
Q ss_pred EEEEEe
Q 008351 545 TAFVVE 550 (569)
Q Consensus 545 ~~~~V~ 550 (569)
..|+|.
T Consensus 582 ~~~~v~ 587 (587)
T TIGR01480 582 REVTVR 587 (587)
T ss_pred EEEEeC
Confidence 999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=8.9e-78 Score=638.02 Aligned_cols=427 Identities=19% Similarity=0.263 Sum_probs=297.2
Q ss_pred EEEEEEEEEEEeccCce-eeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccC
Q 008351 26 VEHSFHVKNLTIGRLCR-QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPI 104 (569)
Q Consensus 26 ~~~~l~~~~~~~~~~g~-~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i 104 (569)
..|+|++++....+++. ...+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++.+. +||+| ||+|
T Consensus 46 ~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~I 120 (523)
T PRK10965 46 GRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGII 120 (523)
T ss_pred ccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCCC
Confidence 46999999999999854 457999999999999999999999999999999999999999999876 89987 8999
Q ss_pred CCCCeeEEEEEeCCCCcceeEecchhhh----hc-cceeeEEEeCCCCCCCCCCC--CCCceeEEeeeeeccCHHHHHHH
Q 008351 105 TPGRSYTYKFNVINQEGTLWWHGHVSLL----RA-TVYGALIIRPKSGHEYPYPK--PDKEVPILLGEWWNANVVDVENQ 177 (569)
Q Consensus 105 ~pG~~~~y~~~~~~~~Gt~wYH~H~~~~----~~-Gl~G~liV~~~~~~~~~~~~--~d~e~~l~l~d~~~~~~~~~~~~ 177 (569)
.||++++|+|++++++||||||+|.++. .. ||+|+|||+++++...+++. ..+|++|+++||+++...++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999996678999999998643 33 99999999998765433333 34689999999998765443211
Q ss_pred HHh-cCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEE-eCceeEEEEecCCCC-C
Q 008351 178 AQI-TGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKI-ANHKFTVVSVDASYT-D 254 (569)
Q Consensus 178 ~~~-~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~ 254 (569)
... .......++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~ 267 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAE 267 (523)
T ss_pred ccccccccCccCCeEEECCccc------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccC
Confidence 110 011124578999999944 566775 579999999999999999998 799999999999997 9
Q ss_pred ceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccccc
Q 008351 255 PYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKF 334 (569)
Q Consensus 255 p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~ 334 (569)
|+.+++|.|+|||||||+|+++ +.++|.+....................++++..........+|.
T Consensus 268 P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~------------- 333 (523)
T PRK10965 268 PVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPD------------- 333 (523)
T ss_pred ccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCCh-------------
Confidence 9999999999999999999998 46789988764432210000011134555555432211111221
Q ss_pred ccccCCCCCCCCCCCCCCCCceEEEEEEeccc----cc---cccc-ccccCC----------CC------------Ce-e
Q 008351 335 YSNLTGLTDGPHWVPVPRQVDKHMFVTVGLAL----DR---CAAN-ATCQGP----------NG------------QR-F 383 (569)
Q Consensus 335 ~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~----~~---~~~~-~~~~~~----------~~------------~~-~ 383 (569)
.+..+... +. ......+++.+.+.... .. .... ....+. .+ .+ +
T Consensus 334 --~l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (523)
T PRK10965 334 --SLASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAF 408 (523)
T ss_pred --hhccCCCC--Cc-ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 11111100 00 00011233333221000 00 0000 000000 00 00 0
Q ss_pred ----EEeecCceeecCCCchhhhhhhcccCCccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEE
Q 008351 384 ----SASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVL 459 (569)
Q Consensus 384 ----~~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l 459 (569)
.|+|||++|.. ....+.++.|++|+|.|
T Consensus 409 ~~~~~~~ING~~~~~------------------------------------------------~~~~~~~~~G~~e~w~i 440 (523)
T PRK10965 409 DFHHANKINGKAFDM------------------------------------------------NKPMFAAKKGQYERWVI 440 (523)
T ss_pred cccccccCCCeECCC------------------------------------------------CCcceecCCCCEEEEEE
Confidence 02333333211 11335789999999999
Q ss_pred EeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC----CceeEEEeecc
Q 008351 460 QNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN----NPGVWFVHCHL 535 (569)
Q Consensus 460 ~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad----npG~w~~HCHi 535 (569)
.|.+. .+.|||||||++|+||+++.. +.....+.|||||.|++ +.+.|+++++ ++|.|||||||
T Consensus 441 ~N~~~--~~~Hp~HlHg~~F~Vl~~~g~---------~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHi 508 (523)
T PRK10965 441 SGVGD--MMLHPFHIHGTQFRILSENGK---------PPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHL 508 (523)
T ss_pred EeCCC--CCccCeEEeCcEEEEEEecCC---------CCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCc
Confidence 99752 268999999999999998532 22223467999999988 6677766654 67799999999
Q ss_pred ccccccccEEEEEE
Q 008351 536 DVHLPWGLATAFVV 549 (569)
Q Consensus 536 l~H~d~GM~~~~~V 549 (569)
|+|||.|||+.|+|
T Consensus 509 L~Hed~GMM~~~~V 522 (523)
T PRK10965 509 LEHEDTGMMLGFTV 522 (523)
T ss_pred hhhhccCccceeEe
Confidence 99999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.8e-75 Score=615.45 Aligned_cols=403 Identities=15% Similarity=0.196 Sum_probs=292.3
Q ss_pred EEEEEEEEEEeccC-ceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCC
Q 008351 27 EHSFHVKNLTIGRL-CRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPIT 105 (569)
Q Consensus 27 ~~~l~~~~~~~~~~-g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~ 105 (569)
.++|+++......+ |..+.+|+|||++|||+|++++||+|+|+|+|.|+++|+|||||+++... .+||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 37999999998888 57889999999999999999999999999999999999999999999876 467765 6799
Q ss_pred CCCeeEEEEEeCCCCcceeEecchhhhh-----ccceeeEEEeCCCCCCCCCCC-C-CCceeEEeeeeeccCHHHHHHHH
Q 008351 106 PGRSYTYKFNVINQEGTLWWHGHVSLLR-----ATVYGALIIRPKSGHEYPYPK-P-DKEVPILLGEWWNANVVDVENQA 178 (569)
Q Consensus 106 pG~~~~y~~~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~~~~~-~-d~e~~l~l~d~~~~~~~~~~~~~ 178 (569)
||++|+|+|++.+++||||||+|.++.+ .||+|+|||+++.+...+++. + .+|++|+|+||.++........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 9999999999866799999999987744 299999999988664444332 2 3489999999988764432111
Q ss_pred HhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEE-eCceeEEEEecCCCC-Cce
Q 008351 179 QITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKI-ANHKFTVVSVDASYT-DPY 256 (569)
Q Consensus 179 ~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~ 256 (569)
........++.++|||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|+
T Consensus 201 -~~~~~g~~gd~~lvNG~~~------------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQS------------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred -ccccCCccCCeeEECCccC------------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 1111224678999999943 67899885 7999999999999999999 899999999998887 999
Q ss_pred EeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCC---CCCCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCCCcc
Q 008351 257 VTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQ---IPFDNT---TTRGIVVYDGAASSANPLMPALPAFNDTPT 330 (569)
Q Consensus 257 ~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~---~~~~~~---~~~ail~y~~~~~~~~~~~p~~p~~~~~~~ 330 (569)
.++++.|+|||||||+|+++ ..+.+.+++........ ..+... ....+++......... ....+|
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p------- 337 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPL-VTDNLP------- 337 (471)
T ss_pred EeCeEEECCCCeEEEEEECC-CCceEEEECCCccccccccccccCCccccccceeEEEEccccccC-CCCcCC-------
Confidence 99999999999999999997 44567766532110000 000000 0112233322110000 000000
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcccCC
Q 008351 331 AHKFYSNLTGLTDGPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGG 410 (569)
Q Consensus 331 ~~~~~~~l~~l~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~g 410 (569)
..+.. . + ..+...++++.+.++. + .|.|||+.|....
T Consensus 338 -----~~l~~---~--~-~~~~~~~~~~~~~l~~---------------~---~~~INg~~~~~~~-------------- 374 (471)
T PRK10883 338 -----MRLLP---D--E-IMEGSPIRSREISLGD---------------D---LPGINGALWDMNR-------------- 374 (471)
T ss_pred -----hhhcC---C--C-CCCCCCcceEEEEecC---------------C---cCccCCcccCCCc--------------
Confidence 00100 0 0 0111223333333321 1 3568887763211
Q ss_pred ccCCCCCCCCCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCC
Q 008351 411 IYTPNFPNNPPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYN 490 (569)
Q Consensus 411 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~ 490 (569)
..+.+++|++|+|.+.|. +.|||||||+.|||++++..
T Consensus 375 ----------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~--- 412 (471)
T PRK10883 375 ----------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGA--- 412 (471)
T ss_pred ----------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCC---
Confidence 124679999999999874 58999999999999998532
Q ss_pred cccccccccCCCCCccceEEeCCCcEEEEEEEeCCce----eEEEeeccccccccccEEEEEEec
Q 008351 491 AARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNPG----VWFVHCHLDVHLPWGLATAFVVEN 551 (569)
Q Consensus 491 ~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 551 (569)
.....+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 413 ------~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 413 ------MPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ------CCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1111234699999996 4699999999887 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-59 Score=497.33 Aligned_cols=410 Identities=26% Similarity=0.370 Sum_probs=288.0
Q ss_pred EEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCC
Q 008351 28 HSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPG 107 (569)
Q Consensus 28 ~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG 107 (569)
+.+..+.......+.....|++||++|||+|++++||+|+|+++|.+.+++++||||+..++. +||++..+|+++.||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~~--~dG~~~~~~~~~~~~ 113 (451)
T COG2132 36 FLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPGE--MDGVPPLTQIPPGPG 113 (451)
T ss_pred EEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCcc--ccCCCcccccCCCCC
Confidence 333333333445578899999999999999999999999999999998889999999888844 899999999999999
Q ss_pred CeeEEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHhcCCCCC
Q 008351 108 RSYTYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPN 186 (569)
Q Consensus 108 ~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~ 186 (569)
++++|.|+. .++||||||+|.++|.. ||+|++||++..+.+. .+|.+..+++.+|........... .......
T Consensus 114 ~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 187 (451)
T COG2132 114 ETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGF 187 (451)
T ss_pred CcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCC
Confidence 999999998 77789999999999876 9999999999875543 466676777777776554333221 1222335
Q ss_pred CCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCC
Q 008351 187 ISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPG 266 (569)
Q Consensus 187 ~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pg 266 (569)
..+..+|||+.+ +.+.++ +.+|||||+|+++.+.+.+++.+++|+||++||.++.+..+|.+.|.||
T Consensus 188 ~g~~~~vnG~~~------------p~~~~~-~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~ 254 (451)
T COG2132 188 PGDTLLVNGAIL------------PFKAVP-GGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPG 254 (451)
T ss_pred CCCeEEECCCcc------------ceeecC-CCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCc
Confidence 678999999733 444444 4569999999998888888888999999999999998799999999999
Q ss_pred cEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCc--cccc-cccccCCCCC
Q 008351 267 QTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTP--TAHK-FYSNLTGLTD 343 (569)
Q Consensus 267 eR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~--~~~~-~~~~l~~l~~ 343 (569)
|||||++++. +.+.+.+.|.. .... ....+......... +..+..+... .... .......+..
T Consensus 255 er~~v~v~~~-~~~~~~l~~~~-~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~ 320 (451)
T COG2132 255 ERYEVLVDMN-DGGAVTLTALG-EDMP------DTLKGFRAPNPILT------PSYPVLNGRVGAPTGDMADHAPVGLLV 320 (451)
T ss_pred ceEEEEEEcC-CCCeEEEEecc-ccCC------ceeeeeeccccccc------cccccccccccCCCcchhhccccccch
Confidence 9999999998 46889998876 1111 01112221111000 0000000000 0000 0000000000
Q ss_pred CCCCCCCCCCCceEEEEEEecccccccccccccCCCCCeeEEeecCceeecCCCchhhhhhhcccCCccCCCCCCCCCCC
Q 008351 344 GPHWVPVPRQVDKHMFVTVGLALDRCAANATCQGPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNNPPLK 423 (569)
Q Consensus 344 ~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~p~~ 423 (569)
.....+. ...++.+.+. .....+.|.+|+..|..
T Consensus 321 ~~~~~~~-~~~~~~~~l~----------------~~~~~~~~~~n~~~~~~----------------------------- 354 (451)
T COG2132 321 TILVEPG-PNRDTDFHLI----------------GGIGGYVWAINGKAFDD----------------------------- 354 (451)
T ss_pred hhcCCCc-ccccccchhh----------------cccccccccccCccCCC-----------------------------
Confidence 0000000 0000000000 00011233444332211
Q ss_pred ccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCC
Q 008351 424 FDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNP 503 (569)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p 503 (569)
....+.++.|++++|++.|.+. +.||||+||+.|+|++.+ .......+
T Consensus 355 -------------------~~~~~~~~~G~~~~~~i~n~~~---~~HP~HlHg~~F~v~~~~----------~~~~~~~~ 402 (451)
T COG2132 355 -------------------NRVTLIAKAGTRERWVLTNDTP---MPHPFHLHGHFFQVLSGD----------APAPGAAP 402 (451)
T ss_pred -------------------CcCceeecCCCEEEEEEECCCC---CccCeEEcCceEEEEecC----------CCcccccC
Confidence 1244678999999999999764 899999999999999986 11223456
Q ss_pred CccceEEeCCCcEEEEEEEeCCceeEEEeeccccccccccEEEEEEe
Q 008351 504 QRRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 504 ~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
.||||+.+.++..++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 403 ~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 403 GWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred ccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 89999999999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=6.6e-48 Score=385.54 Aligned_cols=265 Identities=19% Similarity=0.257 Sum_probs=217.4
Q ss_pred cccceEEEEEEEEEEEecc-CceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC--CceeEeeecccccCCCCCCCCC
Q 008351 21 ASAAIVEHSFHVKNLTIGR-LCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP--YNITIHWHGIFQLLSPWADGPN 97 (569)
Q Consensus 21 ~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~--~~~~iH~HG~~~~~~~~~DG~~ 97 (569)
+...+++|+|++++..+.. +|+.+.+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 4678899999999999885 599999999999999999999999999999999985 58899999962 369988
Q ss_pred CcccccCCCCCeeEEEEEeCCCCcceeEecchhh----hhc-cceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHH
Q 008351 98 MITQCPITPGRSYTYKFNVINQEGTLWWHGHVSL----LRA-TVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVV 172 (569)
Q Consensus 98 ~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~----~~~-Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~ 172 (569)
.++| |.||++++|+|++ .++||||||||.++ +.. ||+|+|||++++.. +.+|+|++|+++||+++...
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 8877 9999999999998 89999999999654 443 99999999987532 25789999999999986532
Q ss_pred HHHHHHH--hcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecC
Q 008351 173 DVENQAQ--ITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDA 250 (569)
Q Consensus 173 ~~~~~~~--~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG 250 (569)
....... ........++.++|||+.+. ..+.+.+++|+++||||+|++..+.+.|+++|+.+++|+.||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~---------~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG 241 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGA---------LTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTG 241 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCC---------CCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECC
Confidence 2100000 00001135689999999653 224578999999999999999988899999999999999999
Q ss_pred CCCCc-e-EeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCC
Q 008351 251 SYTDP-Y-VTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAA 312 (569)
Q Consensus 251 ~~~~p-~-~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~ 312 (569)
.++.+ . .++++.|+||||+||+|+++ +||.|+++||.+.... .....++|+|++..
T Consensus 242 ~~~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~-----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 242 KFANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAF-----EKGAAAQVKVEGAW 299 (311)
T ss_pred cccCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHH-----hCCCEEEEEECCCC
Confidence 99965 3 48999999999999999999 5899999999875432 12467999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=2.4e-35 Score=251.61 Aligned_cols=116 Identities=45% Similarity=0.830 Sum_probs=108.0
Q ss_pred EEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCee
Q 008351 31 HVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSY 110 (569)
Q Consensus 31 ~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~ 110 (569)
+|++..+.++|..+.+|+|||++|||+|++++||+|+|+|+|.++++++|||||+++...+|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCC
Q 008351 111 TYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKS 146 (569)
Q Consensus 111 ~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~ 146 (569)
+|+|++++++||||||||..++.. ||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 999999555999999999998644 999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=7.2e-30 Score=227.38 Aligned_cols=108 Identities=45% Similarity=0.779 Sum_probs=96.8
Q ss_pred CCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEE
Q 008351 440 APKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVI 519 (569)
Q Consensus 440 ~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~i 519 (569)
...+..++.++.|++|||+|.|.+. ..|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~---~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGS---MPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTT---SSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCC---CccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 3456688999999999999999765 7999999999999999988776554 45677889999999999999999999
Q ss_pred EEEeCCceeEEEeeccccccccccEEEEEEec
Q 008351 520 RFQANNPGVWFVHCHLDVHLPWGLATAFVVEN 551 (569)
Q Consensus 520 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 551 (569)
||++||||.|+||||+++|+|.|||++|+|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999975
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=3.7e-27 Score=214.30 Aligned_cols=150 Identities=37% Similarity=0.601 Sum_probs=120.6
Q ss_pred ceeEEeeeeeccCHHHHHHHHHhcCC----CCCCCceEEEcCcCCCCCCCCCC---CCcceEEEEEcCcEEEEEEEecCC
Q 008351 158 EVPILLGEWWNANVVDVENQAQITGG----APNISDAYTINGKPGDLYPCSQN---PNQIYKLKVVEGKTYLLRIINAAL 230 (569)
Q Consensus 158 e~~l~l~d~~~~~~~~~~~~~~~~g~----~~~~~~~~liNG~~~~~~~~~~~---~~~~~~~~v~~G~~~rlRliN~~~ 230 (569)
|++|+++||+++....+..+....+. .+..+++++|||+ + .++|+.. ....+.+.+++|++|||||||+|+
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-~-~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGK-G-RFDCSSADYTGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTB-T-CBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESS
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCc-c-ccccccccccccccceEEEcCCcEEEEEEEeccC
Confidence 78999999999888777664443322 2678999999999 3 4556531 245789999999999999999999
Q ss_pred CCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcC
Q 008351 231 NNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDG 310 (569)
Q Consensus 231 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~ 310 (569)
...+.|+|+||+|+|||+||.+++|..++++.|++||||||+|++++++|+|+|++....... .........|+|+|++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~-~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSI-NDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSS-HSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCC-ccCCCcEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999977999999997322211 1223456899999986
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.74 E-value=7.7e-17 Score=173.56 Aligned_cols=240 Identities=14% Similarity=0.147 Sum_probs=150.1
Q ss_pred EEEcCCCCC--CeEEEecCCEEEEEEEeCCCC-ceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCCC
Q 008351 47 TAVNGRLPG--PTIRVHEGDTLVVHVFNESPY-NITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVINQ 119 (569)
Q Consensus 47 ~~~NG~~Pg--P~i~~~~Gd~v~i~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~~ 119 (569)
+++||+.+. +++.+++|+++|+|++|.... ...++..|....-.. .||.+- +....|.||||++..+++ ..
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999863 689999999999999999753 355666565443222 499762 345779999999999997 56
Q ss_pred CcceeEecchhhhhccceeeEEEeCCC-CCCCC-CCCC----CCceeE------------Eee-----ee----------
Q 008351 120 EGTLWWHGHVSLLRATVYGALIIRPKS-GHEYP-YPKP----DKEVPI------------LLG-----EW---------- 166 (569)
Q Consensus 120 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----d~e~~l------------~l~-----d~---------- 166 (569)
.|.|+..+...+.. |...+.+..... ..+.| .... ..+... ... +.
T Consensus 327 ~g~~~i~a~~~~~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDRT-GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCCC-ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 78999887654332 333333322111 10011 0000 000000 000 00
Q ss_pred ecc----------------------------------------CHHHHHHHHHhcC-------CCC-----------CCC
Q 008351 167 WNA----------------------------------------NVVDVENQAQITG-------GAP-----------NIS 188 (569)
Q Consensus 167 ~~~----------------------------------------~~~~~~~~~~~~g-------~~~-----------~~~ 188 (569)
.++ .....+....... ..+ ...
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 0000000000000 000 011
Q ss_pred ceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcE
Q 008351 189 DAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQT 268 (569)
Q Consensus 189 ~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR 268 (569)
..|+|||+.+ ...+.+.++.|+++||||+|.+. ..|.||+|||.|.++..||.+ +...|++.|.|||+
T Consensus 486 ~~wtiNG~~~---------~~~~pl~v~~Gervri~l~N~t~-~~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t 553 (587)
T TIGR01480 486 FAWSFDGEAF---------GLKTPLRFNYGERLRVVLVNDTM-MAHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGK 553 (587)
T ss_pred eEEEECCccC---------CCCCceEecCCCEEEEEEECCCC-CCcceeEcCceeeeecCCCcc--cccCCceeeCCCCE
Confidence 2489999965 23356889999999999999885 459999999999999888864 23348899999999
Q ss_pred EEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEE
Q 008351 269 TDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVY 308 (569)
Q Consensus 269 ~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y 308 (569)
+++.|+++ +||.|++|||...... ..+.+.++|
T Consensus 554 ~~~~f~ad-~pG~w~~HCH~l~H~~------~GM~~~~~v 586 (587)
T TIGR01480 554 RSFRVTAD-ALGRWAYHCHMLLHME------AGMFREVTV 586 (587)
T ss_pred EEEEEECC-CCeEEEEcCCCHHHHh------CcCcEEEEe
Confidence 99999999 8999999999865543 135566655
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.73 E-value=1.3e-15 Score=152.93 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=152.3
Q ss_pred CceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCC-CeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCC
Q 008351 188 SDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALN-NQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPG 266 (569)
Q Consensus 188 ~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pg 266 (569)
.+.+++||+ ...|.+++++|+++++++.|.... ..+.+++|++. +.||... ...|.||
T Consensus 47 ~~~~~~nG~-----------~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG 105 (311)
T TIGR02376 47 YQAMTFDGS-----------VPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPG 105 (311)
T ss_pred EEEEEECCc-----------ccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCC
Confidence 457999998 245899999999999999998632 45889998864 4566531 2238999
Q ss_pred cEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCC
Q 008351 267 QTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDGAASSANPLMPALPAFNDTPTAHKFYSNLTGLTDGPH 346 (569)
Q Consensus 267 eR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~ 346 (569)
|++.+.+.++ .+|.||+|||....... .. ..++.+.|.+..... .+
T Consensus 106 ~t~ty~F~~~-~~Gty~YH~H~~~~~~~-q~-~~Gl~G~liV~~~~~-----~~-------------------------- 151 (311)
T TIGR02376 106 ETATLRFKAT-RPGAFVYHCAPPGMVPW-HV-VSGMNGAIMVLPREG-----LP-------------------------- 151 (311)
T ss_pred CeEEEEEEcC-CCEEEEEEcCCCCchhH-Hh-hcCcceEEEeeccCC-----Cc--------------------------
Confidence 9999999998 79999999996421000 00 123455555543210 00
Q ss_pred CCCCCCCCceEEEEEEe-ccccccc-----cccccc-CCCCCeeEEeecCceeecCCCchhhhhhhcccCCccCCCCCCC
Q 008351 347 WVPVPRQVDKHMFVTVG-LALDRCA-----ANATCQ-GPNGQRFSASMNNHSFQFPTSLSLLQAFFFNVGGIYTPNFPNN 419 (569)
Q Consensus 347 ~~~~p~~~d~~~~~~~~-~~~~~~~-----~~~~~~-~~~~~~~~~~in~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~ 419 (569)
..|+.+.+.+. +...... ...... ......-.+.+||+...
T Consensus 152 ------~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~-------------------------- 199 (311)
T TIGR02376 152 ------EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGA-------------------------- 199 (311)
T ss_pred ------CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCC--------------------------
Confidence 11222221111 0000000 000000 00000001233332110
Q ss_pred CCCCccCCCCCCCCCccccCCCCcceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCccccccccc
Q 008351 420 PPLKFDYTNPNVSNNTSLLFAPKLTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFN 499 (569)
Q Consensus 420 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~ 499 (569)
-...+.++.|++++|.|.|.+. ...+.||++|++|+++....+...
T Consensus 200 -----------------------~~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~DG~~~~--------- 245 (311)
T TIGR02376 200 -----------------------LTGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVTGKFAN--------- 245 (311)
T ss_pred -----------------------CCCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEECCcccC---------
Confidence 0012367889999999999753 367899999999999988422111
Q ss_pred CCCCC-ccceEEeCCCcEEEEEEEeCCceeEEEeecccccc-ccccEEEEEEec
Q 008351 500 LVNPQ-RRNTIAVPVGGWAVIRFQANNPGVWFVHCHLDVHL-PWGLATAFVVEN 551 (569)
Q Consensus 500 ~~~p~-~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~ 551 (569)
.+. ..|++.|.||+...|.++++.||.|++|||...|+ ..||+++++|..
T Consensus 246 --~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 246 --PPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred --CCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 122 36999999999999999999999999999999998 679999999864
No 23
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.73 E-value=4e-17 Score=144.60 Aligned_cols=101 Identities=21% Similarity=0.331 Sum_probs=81.3
Q ss_pred ceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCC---CCceeEeeecccccCCCCCCCCCCcccccCCCC----Ce--eE
Q 008351 41 CRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNES---PYNITIHWHGIFQLLSPWADGPNMITQCPITPG----RS--YT 111 (569)
Q Consensus 41 g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l---~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG----~~--~~ 111 (569)
+....-+.++| .++|+|++++||+|+|+|+|.+ .+.+.||+||......+-|||++.++|+++.|+ +. .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 56666788888 4699999999999999999995 455677777765544444899999999998884 11 35
Q ss_pred EEEEeCCCCcceeEecchhhhhc-cceeeEEEe
Q 008351 112 YKFNVINQEGTLWWHGHVSLLRA-TVYGALIIR 143 (569)
Q Consensus 112 y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~ 143 (569)
+.|+. .++||||||||..++.. ||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 56666 58999999999998887 999999985
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.61 E-value=3e-14 Score=152.40 Aligned_cols=235 Identities=17% Similarity=0.166 Sum_probs=146.3
Q ss_pred eeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEee---ecccccCCCCCCCCCC-----cccccCCCCCeeEEE
Q 008351 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHW---HGIFQLLSPWADGPNM-----ITQCPITPGRSYTYK 113 (569)
Q Consensus 43 ~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~---HG~~~~~~~~~DG~~~-----~tq~~i~pG~~~~y~ 113 (569)
...++++||+. .|.+.++ |+++|+||+|... ....+.+ |-+.+... ||.+. +....|.||||++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~---DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIAS---DGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEe---CCCcccCccEeCeEEECccceEEEE
Confidence 44678999996 6888885 6799999999974 4445554 55666665 98542 344679999999999
Q ss_pred EEeCCCCcceeEecchhhhhccc--------eeeEEEeC--CC-CCCCC-----CCC-C------CCceeEEeeeeec--
Q 008351 114 FNVINQEGTLWWHGHVSLLRATV--------YGALIIRP--KS-GHEYP-----YPK-P------DKEVPILLGEWWN-- 168 (569)
Q Consensus 114 ~~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~--~~-~~~~~-----~~~-~------d~e~~l~l~d~~~-- 168 (569)
++. .+.|.++...-..... |+ +-.+.+.. .. ....| .+. . .+.+.+.+..+..
T Consensus 286 v~~-~~~~~~~l~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQM-GMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccCc-ccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 998 5567776655321111 11 11222321 11 00010 000 0 0122222211100
Q ss_pred -------cCHHHHHHH--------HHhcC------------CC-CCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcE
Q 008351 169 -------ANVVDVENQ--------AQITG------------GA-PNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKT 220 (569)
Q Consensus 169 -------~~~~~~~~~--------~~~~g------------~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~ 220 (569)
......... .+..| .. ......++|||+.++ ...+.++++.|++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~--------~~~~~~~~~~G~~ 435 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD--------MNKPMFAAKKGQY 435 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC--------CCCcceecCCCCE
Confidence 000000000 00000 00 000112489999653 2346789999999
Q ss_pred EEEEEEecCCCCeEEEEEeCceeEEEEecCCCCC---ceEeeEEEEcCCcEEEEEEEeCC---CCceeEEEeeecccCC
Q 008351 221 YLLRIINAALNNQLFFKIANHKFTVVSVDASYTD---PYVTDVVVIAPGQTTDVLLKADQ---PVGSYYMAARAYASAP 293 (569)
Q Consensus 221 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~---p~~~d~v~l~pgeR~dv~v~~~~---~~G~y~l~~~~~~~~~ 293 (569)
.+|+|+|.+....|+|||||+.|+|++.||.+.. +.+.|+|.+.+ ++++|+++++. ++|.|++|||.++...
T Consensus 436 e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed 513 (523)
T PRK10965 436 ERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHED 513 (523)
T ss_pred EEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhc
Confidence 9999999997566999999999999999999874 35789999977 88999999973 4679999999987654
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.56 E-value=5.8e-13 Score=144.24 Aligned_cols=256 Identities=14% Similarity=0.145 Sum_probs=150.4
Q ss_pred EEEEEcCCC-C--------CCeEEEecCCEEEEEEEeCCC-CceeEeeecc--cccCCCCCCCCCC----cccccCCCCC
Q 008351 45 VITAVNGRL-P--------GPTIRVHEGDTLVVHVFNESP-YNITIHWHGI--FQLLSPWADGPNM----ITQCPITPGR 108 (569)
Q Consensus 45 ~~~~~NG~~-P--------gP~i~~~~Gd~v~i~l~N~l~-~~~~iH~HG~--~~~~~~~~DG~~~----~tq~~i~pG~ 108 (569)
..+++||+. + -++|.+++|+++|+||+|... ....+|.+|. .+.. .||++- +....|.|||
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa---~DG~~~~P~~~~~l~i~~Gq 243 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE---VDATYTKPFKTKTIVIGPGQ 243 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE---eCCcccCceEeCeEEecCCC
Confidence 568999984 1 148999999999999999964 3344555554 4444 499752 3447799999
Q ss_pred eeEEEEEeCCCCcceeEecchhh--h---hc-cceeeEEEeCCCCCCCCC----CCCCCc---------e-eEEeeeeec
Q 008351 109 SYTYKFNVINQEGTLWWHGHVSL--L---RA-TVYGALIIRPKSGHEYPY----PKPDKE---------V-PILLGEWWN 168 (569)
Q Consensus 109 ~~~y~~~~~~~~Gt~wYH~H~~~--~---~~-Gl~G~liV~~~~~~~~~~----~~~d~e---------~-~l~l~d~~~ 168 (569)
|++..+++.+.+|.||.+.+... . .. ...+.|...+......+. +..+.. . .+....+..
T Consensus 244 RydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 323 (539)
T TIGR03389 244 TTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPA 323 (539)
T ss_pred EEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCC
Confidence 99999999556899999987431 1 11 122333332222111110 000000 0 000000000
Q ss_pred ---cCHHH----HHHHHHhcC------CCCCCCceEEEcCcCCCCC---------------------------CC-CCC-
Q 008351 169 ---ANVVD----VENQAQITG------GAPNISDAYTINGKPGDLY---------------------------PC-SQN- 206 (569)
Q Consensus 169 ---~~~~~----~~~~~~~~g------~~~~~~~~~liNG~~~~~~---------------------------~~-~~~- 206 (569)
..... .+....... ......-.+.|||+++..- .| +..
T Consensus 324 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 403 (539)
T TIGR03389 324 NVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTN 403 (539)
T ss_pred CCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCC
Confidence 00000 000000000 0000012357888753100 00 000
Q ss_pred -------CCcceEEEEEcCcEEEEEEEecCC--CCeEEEEEeCceeEEEEec-CCC-----------CCceEeeEEEEcC
Q 008351 207 -------PNQIYKLKVVEGKTYLLRIINAAL--NNQLFFKIANHKFTVVSVD-ASY-----------TDPYVTDVVVIAP 265 (569)
Q Consensus 207 -------~~~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~p 265 (569)
......+.++.|+++++.|.|.+. ...|+||||||.|+|++.. |.+ ..|...|++.+.+
T Consensus 404 ~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~ 483 (539)
T TIGR03389 404 LPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPT 483 (539)
T ss_pred cccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCC
Confidence 001235788999999999999853 3369999999999999886 321 2477899999999
Q ss_pred CcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcC
Q 008351 266 GQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDG 310 (569)
Q Consensus 266 geR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~ 310 (569)
+..+-|.++++ +||.|.||||...... .++..++.+..
T Consensus 484 ~g~vvirf~ad-NPG~W~~HCHi~~H~~------~Gm~~~~~~~~ 521 (539)
T TIGR03389 484 GGWAAIRFVAD-NPGVWFMHCHLEVHTT------WGLKMAFLVDN 521 (539)
T ss_pred CceEEEEEecC-CCeEEEEEecccchhh------hcceEEEEEcc
Confidence 99999999999 9999999999976654 13445555543
No 26
>PLN02835 oxidoreductase
Probab=99.56 E-value=4.6e-13 Score=143.90 Aligned_cols=257 Identities=13% Similarity=0.075 Sum_probs=153.9
Q ss_pred eEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCC
Q 008351 44 RVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVIN 118 (569)
Q Consensus 44 ~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~ 118 (569)
...+++||+. .|++++++|+++|+|++|... ....+|..|..+.-.. .||.+- +....|.||||++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 4679999996 589999999999999999964 3455555555443221 499753 33467999999999999966
Q ss_pred CCcceeEecchhhhhc--cceeeEEEeCCCC---CCCCC-CCCCC--------ceeEEeeeeeccCHH---HHH------
Q 008351 119 QEGTLWWHGHVSLLRA--TVYGALIIRPKSG---HEYPY-PKPDK--------EVPILLGEWWNANVV---DVE------ 175 (569)
Q Consensus 119 ~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~---~~~~~-~~~d~--------e~~l~l~d~~~~~~~---~~~------ 175 (569)
.+|.||.+.-...... ...+.+..+.... .+.+. +..+. .....+......... ...
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 6899999863211111 2223333322211 01111 00000 000001100000000 000
Q ss_pred HHH-HhcCCC-CCCCceEEEcCcCCCCC---------------CCCC----CC------CcceEEEEEcCcEEEEEEEec
Q 008351 176 NQA-QITGGA-PNISDAYTINGKPGDLY---------------PCSQ----NP------NQIYKLKVVEGKTYLLRIINA 228 (569)
Q Consensus 176 ~~~-~~~g~~-~~~~~~~liNG~~~~~~---------------~~~~----~~------~~~~~~~v~~G~~~rlRliN~ 228 (569)
... ...... ......+.|||.++... -|.. .+ ...-.+.++.|+++.+-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 000000 00013577899876310 0100 00 012346778899999999998
Q ss_pred CCCCeEEEEEeCceeEEEEe-cCCC----------CCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCC
Q 008351 229 ALNNQLFFKIANHKFTVVSV-DASY----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPF 297 (569)
Q Consensus 229 ~~~~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~ 297 (569)
+.. .|+||||||.|+|++. +|.+ ..|...|++.+.++..+-|.++++ +||.|.+|||......
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H~~---- 502 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWERQY---- 502 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhhhh----
Confidence 644 5999999999999987 5522 248999999999999999999999 9999999999865432
Q ss_pred CCcceEEEEEEcC
Q 008351 298 DNTTTRGIVVYDG 310 (569)
Q Consensus 298 ~~~~~~ail~y~~ 310 (569)
.++..++++..
T Consensus 503 --~Gm~~~~~V~~ 513 (539)
T PLN02835 503 --LGQQFYLRVWN 513 (539)
T ss_pred --cccEEEEEEcc
Confidence 24556666654
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.52 E-value=6.6e-13 Score=140.87 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=138.1
Q ss_pred ceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCC-CceeEee---ecccccCCCCCCCCCC-----cccccCCCCCeeE
Q 008351 41 CRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESP-YNITIHW---HGIFQLLSPWADGPNM-----ITQCPITPGRSYT 111 (569)
Q Consensus 41 g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~-~~~~iH~---HG~~~~~~~~~DG~~~-----~tq~~i~pG~~~~ 111 (569)
|....++++||+. .|.|.++.| ++|+|++|... ....+++ |-+.+... ||... +.+..|.||||++
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~---DGg~~~~P~~~~~l~l~pGeR~d 280 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAG---DQGFLPAPVSVKQLSLAPGERRE 280 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEe---CCCcccCCcEeCeEEECCCCeEE
Confidence 3456779999996 799999875 89999999975 4456666 44555654 86432 3457799999999
Q ss_pred EEEEeCCCCcceeEecchh-hhhcccee------------eEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHH-
Q 008351 112 YKFNVINQEGTLWWHGHVS-LLRATVYG------------ALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQ- 177 (569)
Q Consensus 112 y~~~~~~~~Gt~wYH~H~~-~~~~Gl~G------------~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~- 177 (569)
..+++ .+.+.+.+++-.. +....+.+ .+-++...... + .....+..+......... ....
T Consensus 281 vlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~p~~l~~~~~~~~~-~~~~~ 354 (471)
T PRK10883 281 ILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-L---VTDNLPMRLLPDEIMEGS-PIRSR 354 (471)
T ss_pred EEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-C---CCCcCChhhcCCCCCCCC-CcceE
Confidence 99998 5556666665311 11011111 11111111000 0 000001000000000000 0000
Q ss_pred HHhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCc--
Q 008351 178 AQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDP-- 255 (569)
Q Consensus 178 ~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p-- 255 (569)
...-+ .+.++|||+.++ ...+.++++.|++++|+|.|.. .|+||||+|.|+|++.||....+
T Consensus 355 ~~~l~-----~~~~~INg~~~~--------~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~ 418 (471)
T PRK10883 355 EISLG-----DDLPGINGALWD--------MNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPED 418 (471)
T ss_pred EEEec-----CCcCccCCcccC--------CCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccc
Confidence 00001 113469999763 2334578999999999998873 58999999999999999986543
Q ss_pred -eEeeEEEEcCCcEEEEEEEeCCCCc---eeEEEeeecccCC
Q 008351 256 -YVTDVVVIAPGQTTDVLLKADQPVG---SYYMAARAYASAP 293 (569)
Q Consensus 256 -~~~d~v~l~pgeR~dv~v~~~~~~G---~y~l~~~~~~~~~ 293 (569)
.+.|+|.+. +++.|+++++...| .|++|||.++...
T Consensus 419 ~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD 458 (471)
T PRK10883 419 RGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMAD 458 (471)
T ss_pred cCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccc
Confidence 457999994 57999999995333 7999999987654
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.51 E-value=1.5e-13 Score=117.19 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=87.8
Q ss_pred HHHHHHhhcccccceEEEEEEEE--EEEe---ccCceeeEEE-EEcCCCCCCeEEEecCCEEEEEEEeCCCC--ceeEee
Q 008351 11 ASVLIVSSTLASAAIVEHSFHVK--NLTI---GRLCRQRVIT-AVNGRLPGPTIRVHEGDTLVVHVFNESPY--NITIHW 82 (569)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~--~~~iH~ 82 (569)
.++.++.+..+.+..++|+++|+ ++.+ +..|+....+ ++|+++..+.|+|++||+|+++|.|..+. ...+++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~ 89 (135)
T TIGR03096 10 FALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDA 89 (135)
T ss_pred HHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECC
Confidence 34446677778899999999999 6666 3458887777 99999998999999999999999998754 334444
Q ss_pred ecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhccceee
Q 008351 83 HGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRATVYGA 139 (569)
Q Consensus 83 HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~ 139 (569)
||. +-.|.||++.+|+|++ .++|+|||||-.+....=|-|.
T Consensus 90 ~gi---------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~~H~~~~ 130 (135)
T TIGR03096 90 YGI---------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKNIHLPGS 130 (135)
T ss_pred CCc---------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChhhcCCCc
Confidence 432 1348999999999998 9999999999776543333343
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=8.4e-12 Score=132.95 Aligned_cols=237 Identities=21% Similarity=0.218 Sum_probs=151.1
Q ss_pred ceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCC-CCceeEeeecccccCCCCCCCCC----CcccccCCCCCeeEEEEE
Q 008351 41 CRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNES-PYNITIHWHGIFQLLSPWADGPN----MITQCPITPGRSYTYKFN 115 (569)
Q Consensus 41 g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pG~~~~y~~~ 115 (569)
|.......+||+. -|.+.+ ++..+++||.|.. .....+++.|..+.-.. .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceeec-CCCeEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 5667778888854 355554 4555999999998 67777777766554433 58866 566788999999999999
Q ss_pred eCCCCcceeEecchhhhhccceeeEEEeCCCCCCCC-------CCCCC---CceeEEeeeeeccCHHHHHHHHHhcCCCC
Q 008351 116 VINQEGTLWWHGHVSLLRATVYGALIIRPKSGHEYP-------YPKPD---KEVPILLGEWWNANVVDVENQAQITGGAP 185 (569)
Q Consensus 116 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~-------~~~~d---~e~~l~l~d~~~~~~~~~~~~~~~~g~~~ 185 (569)
. ...|++-+.+........+.+..-.........+ ....| ......+..................+ .
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG--G 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc--c
Confidence 8 5578888888762111122222211111100000 00111 11111111111111000000000000 1
Q ss_pred CCCceEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC--CceEeeEEEE
Q 008351 186 NISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYT--DPYVTDVVVI 263 (569)
Q Consensus 186 ~~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~v~l 263 (569)
.....+.+||+.++ .....+.++.|+++||+|.|-+. ..|+||+||+.|+|++.|...- .+...|++.+
T Consensus 340 ~~~~~~~~n~~~~~--------~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v 410 (451)
T COG2132 340 IGGYVWAINGKAFD--------DNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDTVLV 410 (451)
T ss_pred cccccccccCccCC--------CCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceEEEe
Confidence 12346888888652 12577899999999999999997 5699999999999999992222 4578899999
Q ss_pred cCCcEEEEEEEeCCCCceeEEEeeecccCC
Q 008351 264 APGQTTDVLLKADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 264 ~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~ 293 (569)
.+++++.+.++++ .+|.|++|||......
T Consensus 411 ~~~~~~~v~~~a~-~~g~~~~HCH~l~H~~ 439 (451)
T COG2132 411 APGERLLVRFDAD-YPGPWMFHCHILEHED 439 (451)
T ss_pred CCCeEEEEEEeCC-CCCceEEeccchhHhh
Confidence 9999999999999 8899999999977654
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.35 E-value=7.4e-11 Score=127.86 Aligned_cols=233 Identities=17% Similarity=0.167 Sum_probs=137.2
Q ss_pred eEEEecCCEEEEEEEeCCC-C--ceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCCCC-cceeEecc
Q 008351 57 TIRVHEGDTLVVHVFNESP-Y--NITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVINQE-GTLWWHGH 128 (569)
Q Consensus 57 ~i~~~~Gd~v~i~l~N~l~-~--~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~~~-Gt~wYH~H 128 (569)
.|.+++|+++|+||+|... . ..+|+-|-+.+... ||.+- +....|.||||++..+++.+.+ |.||.+.-
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~---DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEA---DGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEe---CCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 5899999999999999863 3 44555566666654 99652 3446799999999999985444 58999875
Q ss_pred hhhhhc--cceeeEEEeCCCCC-CCC------CCCCCC-------ceeEEeeeeeccCHHHHHHHH--HhcCCCCCCCce
Q 008351 129 VSLLRA--TVYGALIIRPKSGH-EYP------YPKPDK-------EVPILLGEWWNANVVDVENQA--QITGGAPNISDA 190 (569)
Q Consensus 129 ~~~~~~--Gl~G~liV~~~~~~-~~~------~~~~d~-------e~~l~l~d~~~~~~~~~~~~~--~~~g~~~~~~~~ 190 (569)
..+... ....+++.+..... ..+ .+..+. +..++-............... ...+........
T Consensus 281 ~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (541)
T TIGR03388 281 VRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTK 360 (541)
T ss_pred cccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEE
Confidence 433211 11224444432111 000 000000 000000000000000000000 000000011123
Q ss_pred EEEcCcCCCC-------------------------CCCC-------C---CCCcceEEEEEcCcEEEEEEEecCC-----
Q 008351 191 YTINGKPGDL-------------------------YPCS-------Q---NPNQIYKLKVVEGKTYLLRIINAAL----- 230 (569)
Q Consensus 191 ~liNG~~~~~-------------------------~~~~-------~---~~~~~~~~~v~~G~~~rlRliN~~~----- 230 (569)
+.+||.++.. +.|. . .....-.+.++.|++|++.|.|...
T Consensus 361 ~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~ 440 (541)
T TIGR03388 361 WAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNN 440 (541)
T ss_pred EEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCC
Confidence 6788876520 0000 0 0001134788899999999999752
Q ss_pred CCeEEEEEeCceeEEEEec-CCC-----------CCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCC
Q 008351 231 NNQLFFKIANHKFTVVSVD-ASY-----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 231 ~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~ 293 (569)
...|+||||||+|+|++.. |.+ ..|...|++.+.++.-+-|.++++ +||.|.+|||......
T Consensus 441 ~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H~~ 514 (541)
T TIGR03388 441 SETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPHLH 514 (541)
T ss_pred CCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhhhh
Confidence 3469999999999999987 332 147788999999999999999999 9999999999976553
No 31
>PLN02991 oxidoreductase
Probab=99.34 E-value=2.5e-10 Score=122.32 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCC---ceeEeeecccccCCCCCCCCC----CcccccCCCCCeeEEEEE
Q 008351 43 QRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPY---NITIHWHGIFQLLSPWADGPN----MITQCPITPGRSYTYKFN 115 (569)
Q Consensus 43 ~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~---~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pG~~~~y~~~ 115 (569)
....+++||+...+++.+++|+++|+|++|.... ..+|.-|-+.+... ||.+ .+.+..|.||||++..++
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~---DG~~~~p~~~~~l~i~~GQRydvlv~ 265 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEV---EGTHTIQTPFSSLDVHVGQSYSVLIT 265 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEe---CCccccceeeeEEEEcCCcEEEEEEE
Confidence 3567899999656899999999999999999643 44555555555654 9975 234577999999999999
Q ss_pred eCCCCcceeEecchhhhhccce-eeEEEeCCCCC--CCCCCC--CCCceeEEee---eeec-----cC--HH--HH----
Q 008351 116 VINQEGTLWWHGHVSLLRATVY-GALIIRPKSGH--EYPYPK--PDKEVPILLG---EWWN-----AN--VV--DV---- 174 (569)
Q Consensus 116 ~~~~~Gt~wYH~H~~~~~~Gl~-G~liV~~~~~~--~~~~~~--~d~e~~l~l~---d~~~-----~~--~~--~~---- 174 (569)
+.+..|.||.-.-.......+. -+|+-++.... ..+.+. .+.+...-.. ++.. .. .. ..
T Consensus 266 a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~ 345 (543)
T PLN02991 266 ADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKIN 345 (543)
T ss_pred CCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccc
Confidence 9777899997654311111111 13333322211 001110 0000000000 0000 00 00 00
Q ss_pred HHHHH--hcCCC-CCCCceEEEcCcCCCC----------CCCCC----------CC-----CcceEEEEEcCcEEEEEEE
Q 008351 175 ENQAQ--ITGGA-PNISDAYTINGKPGDL----------YPCSQ----------NP-----NQIYKLKVVEGKTYLLRII 226 (569)
Q Consensus 175 ~~~~~--~~g~~-~~~~~~~liNG~~~~~----------~~~~~----------~~-----~~~~~~~v~~G~~~rlRli 226 (569)
..... ..+.. ....-.+.|||.++.. ++-++ .+ ...-.+.++.|+++.+=|-
T Consensus 346 ~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViq 425 (543)
T PLN02991 346 ITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFE 425 (543)
T ss_pred cceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEe
Confidence 00000 00000 0001256788886531 00000 00 1122456788999999888
Q ss_pred ecCCCCeEEEEEeCceeEEEEecC-----------CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeec
Q 008351 227 NAALNNQLFFKIANHKFTVVSVDA-----------SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 289 (569)
Q Consensus 227 N~~~~~~~~~~i~gh~~~via~DG-----------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~ 289 (569)
|.... .|+||||||+|+|++... ++..|...|++.+.++.-+-|.++++ +||.|.+|||..
T Consensus 426 n~~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~ 497 (543)
T PLN02991 426 NWEDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELW 497 (543)
T ss_pred CCCCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCcc
Confidence 86543 599999999999997532 12368899999999999999999999 999999999984
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=99.33 E-value=8.8e-11 Score=126.05 Aligned_cols=239 Identities=19% Similarity=0.201 Sum_probs=143.8
Q ss_pred eEEEEEcCCCC-CCeEEEecCCEEEEEEEeCCCC---ceeEeeecccccCCCCCCCCC----CcccccCCCCCeeEEEEE
Q 008351 44 RVITAVNGRLP-GPTIRVHEGDTLVVHVFNESPY---NITIHWHGIFQLLSPWADGPN----MITQCPITPGRSYTYKFN 115 (569)
Q Consensus 44 ~~~~~~NG~~P-gP~i~~~~Gd~v~i~l~N~l~~---~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pG~~~~y~~~ 115 (569)
...+++||+.+ .|+|++++|+++|+|++|.... ..+|.-|-+.+.. .||.+ .+.+..|.||||++..++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa---~DG~~v~p~~~~~l~i~~GqRydvlv~ 264 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE---TEGTYVQKRVYSSLDIHVGQSYSVLVT 264 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE---ECCeECCCceeeEEEEcCCceEEEEEE
Confidence 45689999952 5799999999999999999643 3455555555555 49964 234578999999999999
Q ss_pred eCCCC-c---ceeEecchhhhhc--cceeeEEEeCCCCCC--CCCC---CC-CC----ceeEEee-eee---ccCH-H--
Q 008351 116 VINQE-G---TLWWHGHVSLLRA--TVYGALIIRPKSGHE--YPYP---KP-DK----EVPILLG-EWW---NANV-V-- 172 (569)
Q Consensus 116 ~~~~~-G---t~wYH~H~~~~~~--Gl~G~liV~~~~~~~--~~~~---~~-d~----e~~l~l~-d~~---~~~~-~-- 172 (569)
+++++ | .||.+.-...... .- .+++.++..... .|.+ .. +. +..+.+. ... .... .
T Consensus 265 a~~~~~g~~~~Y~i~a~~~~~~~~~~~-~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~ 343 (545)
T PLN02168 265 AKTDPVGIYRSYYIVATARFTDAYLGG-VALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGS 343 (545)
T ss_pred cCCCCCCCcceEEEEEEecccCCCcce-EEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccc
Confidence 95444 4 7998876421111 12 244444332110 1111 00 00 1000000 000 0000 0
Q ss_pred -HH-----HHHHHhcCCC--CCCCceEEEcCcCCCC----------CCC---C--C-CCC---------cceEEEEEcCc
Q 008351 173 -DV-----ENQAQITGGA--PNISDAYTINGKPGDL----------YPC---S--Q-NPN---------QIYKLKVVEGK 219 (569)
Q Consensus 173 -~~-----~~~~~~~g~~--~~~~~~~liNG~~~~~----------~~~---~--~-~~~---------~~~~~~v~~G~ 219 (569)
.. .......... ......+.|||.++.. +.- . . .+. ..-.+.++.|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~ 423 (545)
T PLN02168 344 YHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKD 423 (545)
T ss_pred ccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCC
Confidence 00 0000000000 0001357889987531 100 0 0 000 12346788899
Q ss_pred EEEEEEEecCCCCeEEEEEeCceeEEEEe-----cC------CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeee
Q 008351 220 TYLLRIINAALNNQLFFKIANHKFTVVSV-----DA------SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 288 (569)
Q Consensus 220 ~~rlRliN~~~~~~~~~~i~gh~~~via~-----DG------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~ 288 (569)
+|.+=|-|... ..|+||||||.|+|++. |+ ++..|...|++.+.++.-+-|.++++ +||.|.+|||.
T Consensus 424 ~VeiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi 501 (545)
T PLN02168 424 FYHIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQK 501 (545)
T ss_pred EEEEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecC
Confidence 99998888754 36999999999999976 21 23478899999999999999999999 99999999996
No 33
>PLN02604 oxidoreductase
Probab=99.33 E-value=5.4e-11 Score=129.33 Aligned_cols=234 Identities=15% Similarity=0.146 Sum_probs=138.0
Q ss_pred CeEEEecCCEEEEEEEeCCC---CceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCCCCc-ceeEec
Q 008351 56 PTIRVHEGDTLVVHVFNESP---YNITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVINQEG-TLWWHG 127 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~---~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~~~G-t~wYH~ 127 (569)
++|.+++|+++|+||+|... ...+|.-|-+.+... ||.+- +....|.||||++..+++.+.+| .||...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~---DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira 300 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEA---DGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTT 300 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEe---CCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEE
Confidence 48999999999999999964 345566666666654 99652 34577999999999999855555 799986
Q ss_pred chhhhh-ccce-eeEEEeCCCC--CCCCCCCC----CCceeEEeee---------eeccCHHHHHHHH--HhcCCCCCCC
Q 008351 128 HVSLLR-ATVY-GALIIRPKSG--HEYPYPKP----DKEVPILLGE---------WWNANVVDVENQA--QITGGAPNIS 188 (569)
Q Consensus 128 H~~~~~-~Gl~-G~liV~~~~~--~~~~~~~~----d~e~~l~l~d---------~~~~~~~~~~~~~--~~~g~~~~~~ 188 (569)
...... .-.. .+|+.+.... ...+.... -.+....+.. ............. ..........
T Consensus 301 ~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 301 SVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 432211 1011 2333333211 10010000 0000000000 0000000000000 0000000011
Q ss_pred ceEEEcCcCCCCC---------------CCCC---------------------CCCcceEEEEEcCcEEEEEEEecCC--
Q 008351 189 DAYTINGKPGDLY---------------PCSQ---------------------NPNQIYKLKVVEGKTYLLRIINAAL-- 230 (569)
Q Consensus 189 ~~~liNG~~~~~~---------------~~~~---------------------~~~~~~~~~v~~G~~~rlRliN~~~-- 230 (569)
-.+.|||.++... .|.. .......+.++.|++|++.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 2577888754210 0000 0001224788999999999999853
Q ss_pred ---CCeEEEEEeCceeEEEEec-CCC-----------CCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCC
Q 008351 231 ---NNQLFFKIANHKFTVVSVD-ASY-----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 231 ---~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~ 293 (569)
...|+||+|||+|+|++.. |.+ ..|...|++.+.++.-+-|.++++ +||.|.||||......
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~Hl~ 537 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESHFF 537 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhHhh
Confidence 3469999999999999987 432 147788999999999999999999 9999999999866543
No 34
>PLN02354 copper ion binding / oxidoreductase
Probab=99.33 E-value=9.6e-11 Score=126.28 Aligned_cols=240 Identities=13% Similarity=0.140 Sum_probs=144.0
Q ss_pred EEEEEcCCCC------CCeEEEecCCEEEEEEEeCCC-CceeEee--ecccccCCCCCCCCC----CcccccCCCCCeeE
Q 008351 45 VITAVNGRLP------GPTIRVHEGDTLVVHVFNESP-YNITIHW--HGIFQLLSPWADGPN----MITQCPITPGRSYT 111 (569)
Q Consensus 45 ~~~~~NG~~P------gP~i~~~~Gd~v~i~l~N~l~-~~~~iH~--HG~~~~~~~~~DG~~----~~tq~~i~pG~~~~ 111 (569)
..++|||+.. -|+|.+++|+++|+||+|... ....+|. |-+.+.. .||++ .+....|.||||++
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa---~DG~~v~p~~~~~l~i~~GqRyd 266 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE---MEGSHVLQNDYDSLDVHVGQCFS 266 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE---eCCcccCCcceeEEEEccCceEE
Confidence 5789999841 379999999999999999964 3344444 4444454 49975 23446799999999
Q ss_pred EEEEeCCCCcceeEecchhhhhc--cceeeEEEeCCCCC----CCCCCCCCC--------ceeEEeeee--eccC-HH-H
Q 008351 112 YKFNVINQEGTLWWHGHVSLLRA--TVYGALIIRPKSGH----EYPYPKPDK--------EVPILLGEW--WNAN-VV-D 173 (569)
Q Consensus 112 y~~~~~~~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~----~~~~~~~d~--------e~~l~l~d~--~~~~-~~-~ 173 (569)
..+++.+.+|.||.......... ...+ ++....... ..|....+. +...-+.-. .... .. .
T Consensus 267 Vlv~a~~~~g~Y~i~a~~~~~~~~~~~~a-il~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 345 (552)
T PLN02354 267 VLVTANQAPKDYYMVASTRFLKKVLTTTG-IIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYH 345 (552)
T ss_pred EEEECCCCCCcEEEEEeccccCCCccEEE-EEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccc
Confidence 99999667899999887432111 2233 333332211 011100000 000000000 0000 00 0
Q ss_pred -----HHHHH-HhcCC-CCCCCceEEEcCcCCCC----------CCCC------------------CCCCcceEEEEEcC
Q 008351 174 -----VENQA-QITGG-APNISDAYTINGKPGDL----------YPCS------------------QNPNQIYKLKVVEG 218 (569)
Q Consensus 174 -----~~~~~-~~~g~-~~~~~~~~liNG~~~~~----------~~~~------------------~~~~~~~~~~v~~G 218 (569)
..... ..... .......+.|||.++.. +... ......-.+.++.|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~ 425 (552)
T PLN02354 346 YGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFR 425 (552)
T ss_pred cccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCC
Confidence 00000 00000 00001256788876420 0000 00011235677889
Q ss_pred cEEEEEEEecCCCCeEEEEEeCceeEEEEecC-----------CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEee
Q 008351 219 KTYLLRIINAALNNQLFFKIANHKFTVVSVDA-----------SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAAR 287 (569)
Q Consensus 219 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG-----------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~ 287 (569)
+++.+-|.|.... .|+||||||+|+|++.-- ++..|...|++.+.++.-+-|.++++ +||.|.+|||
T Consensus 426 ~~VeiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCH 503 (552)
T PLN02354 426 TFVEIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSE 503 (552)
T ss_pred CEEEEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeecc
Confidence 9999999987543 599999999999996642 12368899999999999999999999 9999999999
Q ss_pred ecc
Q 008351 288 AYA 290 (569)
Q Consensus 288 ~~~ 290 (569)
...
T Consensus 504 i~~ 506 (552)
T PLN02354 504 NWE 506 (552)
T ss_pred ccc
Confidence 943
No 35
>PLN02792 oxidoreductase
Probab=99.32 E-value=4.6e-10 Score=120.48 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=145.0
Q ss_pred eeEEEEEcCCC--CCCeEEEecCCEEEEEEEeCCCC-cee--EeeecccccCCCCCCCCC----CcccccCCCCCeeEEE
Q 008351 43 QRVITAVNGRL--PGPTIRVHEGDTLVVHVFNESPY-NIT--IHWHGIFQLLSPWADGPN----MITQCPITPGRSYTYK 113 (569)
Q Consensus 43 ~~~~~~~NG~~--PgP~i~~~~Gd~v~i~l~N~l~~-~~~--iH~HG~~~~~~~~~DG~~----~~tq~~i~pG~~~~y~ 113 (569)
....+++||+- ..++|.+++|+++++||+|.... ... |.-|-+.+.. .||.+ .+....|.||||++..
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~---~DG~~v~p~~~~~l~i~~GqRydVl 254 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE---VEGTHTVQSMYTSLDIHVGQTYSVL 254 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE---eCCccCCCcceeEEEEccCceEEEE
Confidence 34679999993 24789999999999999999643 344 4445555554 49964 2345679999999999
Q ss_pred EEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCCCC---C-CCCC-CCceeEEe---eeeecc-----CHH----HH-
Q 008351 114 FNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGHEY---P-YPKP-DKEVPILL---GEWWNA-----NVV----DV- 174 (569)
Q Consensus 114 ~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~---~-~~~~-d~e~~l~l---~d~~~~-----~~~----~~- 174 (569)
+++.+.+|.||.......... ...-+|+.+....... + .+.. +.....-. .++... ... ..
T Consensus 255 V~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 334 (536)
T PLN02792 255 VTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYG 334 (536)
T ss_pred EEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccc
Confidence 999666799998765421111 1112444443221110 0 0000 00000000 000000 000 00
Q ss_pred -H---HHH-HhcCCC-CCCCceEEEcCcCCCC----------CCCCC------CCC----------cceEEEEEcCcEEE
Q 008351 175 -E---NQA-QITGGA-PNISDAYTINGKPGDL----------YPCSQ------NPN----------QIYKLKVVEGKTYL 222 (569)
Q Consensus 175 -~---~~~-~~~g~~-~~~~~~~liNG~~~~~----------~~~~~------~~~----------~~~~~~v~~G~~~r 222 (569)
. ... ...+.. ....-.+.|||.++.. ++-.+ .+. ....+.++.|++|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~Ve 414 (536)
T PLN02792 335 KMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLE 414 (536)
T ss_pred eeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEE
Confidence 0 000 000000 0001246788886520 00000 000 13356788899999
Q ss_pred EEEEecCCCCeEEEEEeCceeEEEEec-C----------CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeeccc
Q 008351 223 LRIINAALNNQLFFKIANHKFTVVSVD-A----------SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 291 (569)
Q Consensus 223 lRliN~~~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~ 291 (569)
+-|-|.... .|+||||||+|+||+.- | +++.|...|++.+.++.-+-|.+.++ +||.|.+|||....
T Consensus 415 iViqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~~h 492 (536)
T PLN02792 415 IIFQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFWAR 492 (536)
T ss_pred EEEECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcchhc
Confidence 999886543 58999999999999742 1 23368899999999999999999999 99999999987544
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.30 E-value=1.8e-10 Score=124.59 Aligned_cols=245 Identities=16% Similarity=0.154 Sum_probs=143.6
Q ss_pred EEEEEcCCC---------------CCCeEEEecCCEEEEEEEeCCCC---ceeEeeec-ccccCCCCCCCCCC----ccc
Q 008351 45 VITAVNGRL---------------PGPTIRVHEGDTLVVHVFNESPY---NITIHWHG-IFQLLSPWADGPNM----ITQ 101 (569)
Q Consensus 45 ~~~~~NG~~---------------PgP~i~~~~Gd~v~i~l~N~l~~---~~~iH~HG-~~~~~~~~~DG~~~----~tq 101 (569)
..+++||+. ..|+|++++|+++|+|++|.... ..+|.-|- +.+... ||.+- +..
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~---DG~~~~P~~v~~ 248 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEA---DGSYTKPAKIDH 248 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEe---CCCCCCceEeCe
Confidence 468899983 13789999999999999999753 34455555 656654 99742 234
Q ss_pred ccCCCCCeeEEEEEeCCC-------CcceeEecchhhhhc--cceeeEEEeCCCCCCCC---CC---CC------CCcee
Q 008351 102 CPITPGRSYTYKFNVINQ-------EGTLWWHGHVSLLRA--TVYGALIIRPKSGHEYP---YP---KP------DKEVP 160 (569)
Q Consensus 102 ~~i~pG~~~~y~~~~~~~-------~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~~~---~~---~~------d~e~~ 160 (569)
..|.||||++..+++.+. +|-||...-...... ...+.|..........+ .. .. ..+..
T Consensus 249 l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 328 (538)
T TIGR03390 249 LQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYE 328 (538)
T ss_pred EEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhhee
Confidence 669999999999999433 488998764222111 12333333212111111 00 00 01111
Q ss_pred EE-eeeee---ccCHHHHHHHH-HhcCCC--C-CCCceEEEcCcCCCCC-CCCC------------------------CC
Q 008351 161 IL-LGEWW---NANVVDVENQA-QITGGA--P-NISDAYTINGKPGDLY-PCSQ------------------------NP 207 (569)
Q Consensus 161 l~-l~d~~---~~~~~~~~~~~-~~~g~~--~-~~~~~~liNG~~~~~~-~~~~------------------------~~ 207 (569)
|. +..-. ........... ...+.. . .....+++||.++..- ...+ .+
T Consensus 329 l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
T TIGR03390 329 LEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFD 408 (538)
T ss_pred eEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcC
Confidence 11 10000 00000000000 000000 0 1123578899865310 0000 00
Q ss_pred CcceEEEEEcCcEEEEEEEecC-------CCCeEEEEEeCceeEEEEe-cCCC-----------CCceEeeEEEEc----
Q 008351 208 NQIYKLKVVEGKTYLLRIINAA-------LNNQLFFKIANHKFTVVSV-DASY-----------TDPYVTDVVVIA---- 264 (569)
Q Consensus 208 ~~~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~p~~~d~v~l~---- 264 (569)
...-.+.++.|+++++.|.|.. ....|+||||||+|+||+. +|.+ ..|...|++.+.
T Consensus 409 ~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~ 488 (538)
T TIGR03390 409 PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV 488 (538)
T ss_pred cCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc
Confidence 0112567889999999999975 2356999999999999985 4532 258899999994
Q ss_pred ------CCcEEEEEEEeCCCCceeEEEeeecccCC
Q 008351 265 ------PGQTTDVLLKADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 265 ------pgeR~dv~v~~~~~~G~y~l~~~~~~~~~ 293 (569)
++.-+.|.+.++ +||.|.||||......
T Consensus 489 ~~~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~H~~ 522 (538)
T TIGR03390 489 KVVPGAPAGWRAWRIRVT-NPGVWMMHCHILQHMV 522 (538)
T ss_pred cccccCCCceEEEEEEcC-CCeeEEEeccchhhhh
Confidence 778888899998 9999999999976553
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.17 E-value=1.6e-09 Score=117.84 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=135.3
Q ss_pred eEEEecCCEEEEEEEeCCC---CceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCCCC-cceeEecc
Q 008351 57 TIRVHEGDTLVVHVFNESP---YNITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVINQE-GTLWWHGH 128 (569)
Q Consensus 57 ~i~~~~Gd~v~i~l~N~l~---~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~~~-Gt~wYH~H 128 (569)
+|.+++|+++|+|++|... ...+|.-|-+.+... ||++- +....|.||||++..+++.+.+ +.||.+.-
T Consensus 227 ~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~---DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~ 303 (574)
T PLN02191 227 TLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEA---DGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVG 303 (574)
T ss_pred EEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEc---CCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEE
Confidence 7999999999999999964 345566666666654 99763 3346799999999999985555 48998764
Q ss_pred hhhhh----ccceeeEEEe-CCCCCCCCC------CCCCC-----ceeE-Eeeeee-ccCHHHHHHH-H-HhcCCCCCCC
Q 008351 129 VSLLR----ATVYGALIIR-PKSGHEYPY------PKPDK-----EVPI-LLGEWW-NANVVDVENQ-A-QITGGAPNIS 188 (569)
Q Consensus 129 ~~~~~----~Gl~G~liV~-~~~~~~~~~------~~~d~-----e~~l-~l~d~~-~~~~~~~~~~-~-~~~g~~~~~~ 188 (569)
..... .++ +++-. .......+. +..+. .... .+.... .+........ . ..........
T Consensus 304 ~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 381 (574)
T PLN02191 304 VRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGY 381 (574)
T ss_pred ccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCe
Confidence 33211 122 33333 221110000 00000 0000 000000 0000000000 0 0000000011
Q ss_pred ceEEEcCcCCCCCC------------------------------CCC-----CCCcceEEEEEcCcEEEEEEEecC----
Q 008351 189 DAYTINGKPGDLYP------------------------------CSQ-----NPNQIYKLKVVEGKTYLLRIINAA---- 229 (569)
Q Consensus 189 ~~~liNG~~~~~~~------------------------------~~~-----~~~~~~~~~v~~G~~~rlRliN~~---- 229 (569)
..+.+||.++.... |.. .....-.+.++.|+++.+=|.|..
T Consensus 382 ~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (574)
T PLN02191 382 TKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKG 461 (574)
T ss_pred EEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccC
Confidence 25677887542000 000 001122467778999999898875
Q ss_pred -CCCeEEEEEeCceeEEEEecCC------------CCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecccCC
Q 008351 230 -LNNQLFFKIANHKFTVVSVDAS------------YTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 230 -~~~~~~~~i~gh~~~via~DG~------------~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~ 293 (569)
....|+||+|||+|+||+..-+ +..|...|++.+.++.-+-|.++++ +||-|.+|||......
T Consensus 462 ~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~~Hl~ 537 (574)
T PLN02191 462 VVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIEPHLH 537 (574)
T ss_pred CCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCchhhhh
Confidence 2446999999999999965532 2257789999999999999999999 9999999999976553
No 38
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.12 E-value=8.9e-09 Score=111.30 Aligned_cols=231 Identities=17% Similarity=0.188 Sum_probs=135.6
Q ss_pred CeEEEecCCEEEEEEEeCCC---CceeEeeecccccCCCCCCCCCC----cccccCCCCCeeEEEEEeCCCCc-ceeEec
Q 008351 56 PTIRVHEGDTLVVHVFNESP---YNITIHWHGIFQLLSPWADGPNM----ITQCPITPGRSYTYKFNVINQEG-TLWWHG 127 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~---~~~~iH~HG~~~~~~~~~DG~~~----~tq~~i~pG~~~~y~~~~~~~~G-t~wYH~ 127 (569)
++|.|++|+++++|++|... ...+|.-|-+.+... ||.+- +....|.||||++..+++++.+| .||.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~---DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEA---EGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEe---CCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 58999999999999999963 345666677777665 99652 34467999999999999955555 899865
Q ss_pred chh--hhh--cccee-eEEEeCCCCC----CCCC-CCCCCcee------EEee-----eeeccCH---HH---H-HHHHH
Q 008351 128 HVS--LLR--ATVYG-ALIIRPKSGH----EYPY-PKPDKEVP------ILLG-----EWWNANV---VD---V-ENQAQ 179 (569)
Q Consensus 128 H~~--~~~--~Gl~G-~liV~~~~~~----~~~~-~~~d~e~~------l~l~-----d~~~~~~---~~---~-~~~~~ 179 (569)
-.. ... .-+.| +|+-+..... +.|. +....+.. ..+. ....... .. + .....
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 373 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVY 373 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeee
Confidence 321 111 11122 3333322111 1111 10000100 0000 0000000 00 0 00000
Q ss_pred -hcCC-CCCC--CceEEEcCcCCCC----------CCCCC-----CCC---------cceEEEEEcCcEEEEEEEecCCC
Q 008351 180 -ITGG-APNI--SDAYTINGKPGDL----------YPCSQ-----NPN---------QIYKLKVVEGKTYLLRIINAALN 231 (569)
Q Consensus 180 -~~g~-~~~~--~~~~liNG~~~~~----------~~~~~-----~~~---------~~~~~~v~~G~~~rlRliN~~~~ 231 (569)
..+. ...+ .-.+.|||.++.. ++.++ .+. ....+.++.+++|.+-|-|.. .
T Consensus 374 ~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~-~ 452 (596)
T PLN00044 374 LLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNA-T 452 (596)
T ss_pred eeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCC-C
Confidence 0000 0000 1246788886421 11110 001 233567788999999999865 3
Q ss_pred CeEEEEEeCceeEEEEecC-----------CCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeeccc
Q 008351 232 NQLFFKIANHKFTVVSVDA-----------SYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 291 (569)
Q Consensus 232 ~~~~~~i~gh~~~via~DG-----------~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~ 291 (569)
..|+||||||.|+||+... +++.|...|++.+.+|.-.-|.++++ +||.|.+|||....
T Consensus 453 ~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aD-NPG~W~lHCH~~~h 522 (596)
T PLN00044 453 NVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLD-NAGIWNLRVENLDA 522 (596)
T ss_pred CCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecC-CCEEehhhccCchh
Confidence 3699999999999996644 23468899999999999999999999 99999999996443
No 39
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.05 E-value=1.4e-09 Score=96.51 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=74.7
Q ss_pred cceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC-----------CceEeeEEEEcCCcEEEEEEEeCC
Q 008351 209 QIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYT-----------DPYVTDVVVIAPGQTTDVLLKADQ 277 (569)
Q Consensus 209 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-----------~p~~~d~v~l~pgeR~dv~v~~~~ 277 (569)
....+.++.|++++|+|.|.+.. .|+||+||+.|+|++.++... .|...|++.|.+|+++.|.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 45789999999999999998866 599999999999999999873 68899999999999999999998
Q ss_pred CCceeEEEeeecccC
Q 008351 278 PVGSYYMAARAYASA 292 (569)
Q Consensus 278 ~~G~y~l~~~~~~~~ 292 (569)
.+|.|.+|||.....
T Consensus 110 ~~G~w~~HCHi~~H~ 124 (138)
T PF07731_consen 110 NPGPWLFHCHILEHE 124 (138)
T ss_dssp STEEEEEEESSHHHH
T ss_pred cceEEEEEEchHHHH
Confidence 999999999997543
No 40
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=8.1e-07 Score=95.22 Aligned_cols=246 Identities=19% Similarity=0.177 Sum_probs=143.2
Q ss_pred eEEEEEcCCCC-C----CeEEEecCCEEEEEEEeCC-C--CceeEeeecccccCCCCCCCC---CCc-ccccCCCCCeeE
Q 008351 44 RVITAVNGRLP-G----PTIRVHEGDTLVVHVFNES-P--YNITIHWHGIFQLLSPWADGP---NMI-TQCPITPGRSYT 111 (569)
Q Consensus 44 ~~~~~~NG~~P-g----P~i~~~~Gd~v~i~l~N~l-~--~~~~iH~HG~~~~~~~~~DG~---~~~-tq~~i~pG~~~~ 111 (569)
-....+||+-. . +++.+++|+++++|+.|.. . -...|--|-+.+... ||. |.. ...-|.|||+++
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~---Dg~y~~p~~~~~l~i~~GQ~~~ 268 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEV---DGAYTKPFTTDSLDIHPGQTYS 268 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEe---cceEEeeeeeceEEEcCCcEEE
Confidence 46789999851 1 6899999999999999994 3 335566666666543 885 322 236799999999
Q ss_pred EEEEeCCCCcceeEecchhhhhc------cceeeEEEeCCCC---CCCC----CCC-CCCceeEEeee---eeccC----
Q 008351 112 YKFNVINQEGTLWWHGHVSLLRA------TVYGALIIRPKSG---HEYP----YPK-PDKEVPILLGE---WWNAN---- 170 (569)
Q Consensus 112 y~~~~~~~~Gt~wYH~H~~~~~~------Gl~G~liV~~~~~---~~~~----~~~-~d~e~~l~l~d---~~~~~---- 170 (569)
+-.++.+.++.||+-.....+.. .-+|.+....... ...+ .+. .+....+-+.. +..+.
T Consensus 269 vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~ 348 (563)
T KOG1263|consen 269 VLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFAR 348 (563)
T ss_pred EEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcc
Confidence 99999888889998766543321 1223332222100 0000 000 00000000000 00000
Q ss_pred --HHHHHHHH---------HhcCC-CCCCCceEEEcCcCC----------------CCCCCCCCC-------------Cc
Q 008351 171 --VVDVENQA---------QITGG-APNISDAYTINGKPG----------------DLYPCSQNP-------------NQ 209 (569)
Q Consensus 171 --~~~~~~~~---------~~~g~-~~~~~~~~liNG~~~----------------~~~~~~~~~-------------~~ 209 (569)
........ ..... .........||+.+. ..+.|+..+ ..
T Consensus 349 ~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~ 428 (563)
T KOG1263|consen 349 PVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLG 428 (563)
T ss_pred cCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcccccc
Confidence 00000000 00000 001112344454421 001121110 12
Q ss_pred ceEEEEEcCcEEEEEEEecCCCC--eEEEEEeCceeEEEEecCC-------------CCCceEeeEEEEcCCcEEEEEEE
Q 008351 210 IYKLKVVEGKTYLLRIINAALNN--QLFFKIANHKFTVVSVDAS-------------YTDPYVTDVVVIAPGQTTDVLLK 274 (569)
Q Consensus 210 ~~~~~v~~G~~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~-------------~~~p~~~d~v~l~pgeR~dv~v~ 274 (569)
.-.+.++-+..+.+=|-|.+... .|++|||||.|+|++.+.+ ...|+..|++.|.||.-.-|.+.
T Consensus 429 t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ 508 (563)
T KOG1263|consen 429 TSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFV 508 (563)
T ss_pred ceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEE
Confidence 24578888999999999988554 3677999999999999432 22466789999999999999999
Q ss_pred eCCCCceeEEEeeecccCC
Q 008351 275 ADQPVGSYYMAARAYASAP 293 (569)
Q Consensus 275 ~~~~~G~y~l~~~~~~~~~ 293 (569)
++ +||-|.+|||...+..
T Consensus 509 ad-NPG~W~~HCHie~H~~ 526 (563)
T KOG1263|consen 509 AD-NPGVWLMHCHIEDHLY 526 (563)
T ss_pred cC-CCcEEEEEEecHHHHh
Confidence 99 9999999999976543
No 41
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.79 E-value=2.3e-08 Score=85.40 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=68.2
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
+++.++.|+.|++.+.|... ..+.+|+||...- . ..+. +.... . -.-.|+||+..+.+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~---~~~siH~HG~~~~----~-~~~~---DG~~~------~-~~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLD---EPTSIHWHGLHQP----P-SPWM---DGVPG------V-TQCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEESS---SGBSEEEETSBST----T-GGGG---SGGTT------T-SGSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEeccc---cccccccceeeee----e-eeec---CCccc------c-cceeEEeecceeeeEeee
Confidence 68899999999999999754 7899999996431 0 0000 11000 0 012478899999999998
Q ss_pred C-ceeEEEeeccccccccccEEEEEEecC
Q 008351 525 N-PGVWFVHCHLDVHLPWGLATAFVVENG 552 (569)
Q Consensus 525 n-pG~w~~HCHil~H~d~GM~~~~~V~~~ 552 (569)
. +|.|.||||...|..+||.+.+.|.+.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 8 999999999999988999999999863
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.64 E-value=8.7e-08 Score=80.40 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccc
Q 008351 8 LAFASVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQ 87 (569)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~ 87 (569)
+++++++.+++.+..+.....+++++.. ++--..|+++.|++|+|+++|.....+.+...++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~I~~~~~----------------~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~ 66 (104)
T PF13473_consen 3 AALAAALALSSSASAAAAQTVTITVTDF----------------GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI 66 (104)
T ss_dssp ---------------------------E----------------EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE
T ss_pred ccccccccccccccccccccccccccCC----------------eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCce
Confidence 3334444444444455555556665554 332269999999999999999987775555555322
Q ss_pred cCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhccceeeEEE
Q 008351 88 LLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRATVYGALII 142 (569)
Q Consensus 88 ~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV 142 (569)
. -.|.||++.++.|+. .++|+|=|+|-.++. |.|.|+|
T Consensus 67 ~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~~---m~G~liV 104 (104)
T PF13473_consen 67 S-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHPN---MKGTLIV 104 (104)
T ss_dssp E-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-T---TB-----
T ss_pred E-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCCc---ceecccC
Confidence 1 249999999999987 999999999987763 6677765
No 43
>PRK02710 plastocyanin; Provisional
Probab=98.51 E-value=2.1e-06 Score=73.64 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=51.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhcc
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT 135 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 135 (569)
+.|++++||+| +++|....++++...+. ++.. -+...+.||++++|.|+. +|+|-|+|-.|. ..|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~--------~~~~-~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H~-~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGA--------KELS-HKDLAFAPGESWEETFSE---AGTYTYYCEPHR-GAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCC--------cccc-ccccccCCCCEEEEEecC---CEEEEEEcCCCc-cCC
Confidence 78999999985 56787666777765542 1110 111247899999999973 899999997332 249
Q ss_pred ceeeEEEe
Q 008351 136 VYGALIIR 143 (569)
Q Consensus 136 l~G~liV~ 143 (569)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.09 E-value=1.5e-05 Score=66.08 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=52.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCc--ccccCCCCCeeEEEEEeCCCCcceeEecchhhhh
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMI--TQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLR 133 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 133 (569)
..|++++||+| +++|....++++..+........ .+..+.. +...+.||+++++.|.. +|+|.|+|.. ...
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~~-H~~ 89 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCEP-HRG 89 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcCC-ccc
Confidence 68999999986 56687666666666543211100 0001111 12347899999998863 8999999972 223
Q ss_pred ccceeeEEEe
Q 008351 134 ATVYGALIIR 143 (569)
Q Consensus 134 ~Gl~G~liV~ 143 (569)
+||.|.|+|+
T Consensus 90 aGM~G~I~V~ 99 (99)
T TIGR02656 90 AGMVGKITVE 99 (99)
T ss_pred cCCEEEEEEC
Confidence 4999999984
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.04 E-value=3.1e-05 Score=68.85 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=59.7
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCC---C--cEEEE
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPV---G--GWAVI 519 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~i 519 (569)
+.+.++.|+.|++.+.|... ...|.|-||.+.-..- ..+.-+ ..+.....-.+|+ + ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~------~~p~md------G~~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYP------YMPGMD------GLGFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccc------cccccC------CCCccccCcccCCCCCCccceeEE
Confidence 66889999999999999742 2567766664321000 000000 0011112222332 2 25688
Q ss_pred EEEeCCceeEEEeeccccccccccEEEEEEe
Q 008351 520 RFQANNPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 520 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
.|+++.+|.|.||||+..|...||.+.+.|.
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 8999999999999999999999999999873
No 46
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.97 E-value=4.1e-05 Score=69.56 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=75.4
Q ss_pred ceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEe
Q 008351 444 TSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQA 523 (569)
Q Consensus 444 ~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 523 (569)
..++.++.|++++|.|.|.+. ...+.|++.||+|+|++... .. ..|...|++.|.+|+..-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG---------~~---v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADG---------VP---VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETT---------EE---EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeecc---------cc---ccccccceEEeeCCeEEEEEEEe
Confidence 368899999999999999864 36899999999999999842 12 22667899999999999999999
Q ss_pred CC-ceeEEEee----ccccccccccEEEEEEe
Q 008351 524 NN-PGVWFVHC----HLDVHLPWGLATAFVVE 550 (569)
Q Consensus 524 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~ 550 (569)
+. +|.|.++| +...+...|+...+.+-
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 87 99999999 55667778887666553
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.89 E-value=6.9e-05 Score=59.87 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=50.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhcc
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT 135 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 135 (569)
+.|++++||+| ++.|....+++++..........|.. ..+.||+++++.| .++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCccccccc-------cccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 56788777788776543211111101 1257788877766 56999999997654 5
Q ss_pred ceeeEEEe
Q 008351 136 VYGALIIR 143 (569)
Q Consensus 136 l~G~liV~ 143 (569)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 88999885
No 48
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.88 E-value=0.00023 Score=64.85 Aligned_cols=103 Identities=20% Similarity=0.159 Sum_probs=72.6
Q ss_pred EEEEEcCCCCC-CeEEEecCCEEEEEEEeCCCCcee--EeeecccccC--CCCCCCCC----C-----cccccCCCCCee
Q 008351 45 VITAVNGRLPG-PTIRVHEGDTLVVHVFNESPYNIT--IHWHGIFQLL--SPWADGPN----M-----ITQCPITPGRSY 110 (569)
Q Consensus 45 ~~~~~NG~~Pg-P~i~~~~Gd~v~i~l~N~l~~~~~--iH~HG~~~~~--~~~~DG~~----~-----~tq~~i~pG~~~ 110 (569)
..+-|||..-| ++|-+..|-+|.|+++|....+++ |=--+..++. .-+.||.. + .+...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36789998777 899999999999999999544333 3222222111 12235522 1 122468899999
Q ss_pred EEEEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCCC
Q 008351 111 TYKFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSGH 148 (569)
Q Consensus 111 ~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~ 148 (569)
.-.|.. -++|+|||-|-..+..+ ||++-|+|.+.-..
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt~ 191 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVTV 191 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCccc
Confidence 877765 78999999998877766 99999999976533
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.84 E-value=7.6e-05 Score=79.98 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=67.5
Q ss_pred eccCceeeE--EEEEcCCCCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEE
Q 008351 37 IGRLCRQRV--ITAVNGRLPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKF 114 (569)
Q Consensus 37 ~~~~g~~~~--~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~ 114 (569)
+..+|.... +.+..=.+--+.|+|++||+|+++|+|.....=.+ ||..++.. |+- .-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI~----~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GVN----MEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Ccc----EEEcCCceEEEEE
Confidence 455665443 44555556446899999999999999953211111 55554332 111 2378999999999
Q ss_pred EeCCCCcceeEecchhhhh--ccceeeEEEeCC
Q 008351 115 NVINQEGTLWWHGHVSLLR--ATVYGALIIRPK 145 (569)
Q Consensus 115 ~~~~~~Gt~wYH~H~~~~~--~Gl~G~liV~~~ 145 (569)
++ +++|.|||||..-... .+|.|.|+|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 98 9999999999763222 389999999874
No 50
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.81 E-value=5.4e-05 Score=62.75 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=50.9
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccC-CCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLL-SPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA 134 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~-~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 134 (569)
+.|++++||+| ++.|....++++..=.-.... .......+......+.||+++++.|+ .+|+|.|+|-. ....
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 79999999985 566655555555443211000 00000000001234789999999997 69999999974 3334
Q ss_pred cceeeEEEe
Q 008351 135 TVYGALIIR 143 (569)
Q Consensus 135 Gl~G~liV~ 143 (569)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999985
No 51
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.72 E-value=0.00074 Score=60.22 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=69.6
Q ss_pred EEEcCCCCC-CeEEEecCCEEEEEEEeCCCCceeEee--eccccc--CCCCCCCCC----Ccc-----cccCCCCCeeEE
Q 008351 47 TAVNGRLPG-PTIRVHEGDTLVVHVFNESPYNITIHW--HGIFQL--LSPWADGPN----MIT-----QCPITPGRSYTY 112 (569)
Q Consensus 47 ~~~NG~~Pg-P~i~~~~Gd~v~i~l~N~l~~~~~iH~--HG~~~~--~~~~~DG~~----~~t-----q~~i~pG~~~~y 112 (569)
+-|||+..| ++|-+..|-+|.|+|+|....++++-. -+-..+ .....||.. |.+ -..|.+|++..-
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg 154 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSG 154 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEE
Confidence 678999888 899999999999999999755544333 111111 001126632 222 134678888666
Q ss_pred EEEeCCCCcceeEecchhhhhc-cceeeEEEeCCCC
Q 008351 113 KFNVINQEGTLWWHGHVSLLRA-TVYGALIIRPKSG 147 (569)
Q Consensus 113 ~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~ 147 (569)
.|.. -++|+|||-|-..+... ||+|-+||...-.
T Consensus 155 ~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 155 WWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred Eecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 6665 79999999998877655 9999999987653
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.65 E-value=0.0003 Score=58.27 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=57.2
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|++|+|+ |.+. ..|-+.++...+..- . . ........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~~---~~H~~~~~~~~~~~~-----~-------~--~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKG---GPHNVVFDEDAVPAG-----V-------K--ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECCC---CCceEEECCCCCccc-----h-------h--hhcccccccccccCCCCEEEEEeCC-
Confidence 45789999999887 5432 678777654322110 0 0 0011123467888999998776654
Q ss_pred CceeEEEeeccccccccccEEEEEEe
Q 008351 525 NPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 525 npG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
+|.|.|||- .|..+||.+.+.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.62 E-value=0.00046 Score=59.01 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhcc
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRAT 135 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 135 (569)
-.|++++||+ |+++|.....++++.-+.. .. +|.-. ....+|+++++.|. .+|+|-|+|-.|.. .|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~~---~~~~~~~s~~~Tfe---~~G~Y~Y~C~PH~~-~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSGT---LKAGINESFTHTFE---TPGEYTYYCTPHPG-MG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--ccccc---cccCCCcceEEEec---ccceEEEEeccCCC-CC
Confidence 5899999999 7788887777777766543 11 23221 23455677777775 49999999965422 29
Q ss_pred ceeeEEEeC
Q 008351 136 VYGALIIRP 144 (569)
Q Consensus 136 l~G~liV~~ 144 (569)
|.|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.47 E-value=0.00044 Score=59.59 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=53.3
Q ss_pred cceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeee
Q 008351 209 QIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 288 (569)
Q Consensus 209 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~ 288 (569)
.+..++|++|++++|++.|.+.. .+.+.++++.+ +..|.|||+..+.+.++ .||.|+++|..
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~gi----------------s~~I~pGet~TitF~ad-KpG~Y~y~C~~ 120 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSPI-SEGFSIDAYGI----------------SEVIKAGETKTISFKAD-KAGAFTIWCQL 120 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCCC-ccceEECCCCc----------------ceEECCCCeEEEEEECC-CCEEEEEeCCC
Confidence 45789999999999999999864 46777766521 45688999999999999 79999999987
Q ss_pred ccc
Q 008351 289 YAS 291 (569)
Q Consensus 289 ~~~ 291 (569)
...
T Consensus 121 HP~ 123 (135)
T TIGR03096 121 HPK 123 (135)
T ss_pred CCh
Confidence 543
No 55
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.05 E-value=0.0033 Score=53.27 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=47.3
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEee-ecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHW-HGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA 134 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 134 (569)
..|++++||+|+....|. ++++.+ .+. . -+|... ..-.+|+++++.| +.+|+|=|+|-.|. ..
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~----~--p~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH~-~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGM----I--PEGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPHY-GM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCC----C--cCCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCCc-cC
Confidence 689999999976665554 344433 111 0 123221 1224566666666 56899999997442 23
Q ss_pred cceeeEEEeCCC
Q 008351 135 TVYGALIIRPKS 146 (569)
Q Consensus 135 Gl~G~liV~~~~ 146 (569)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999999753
No 56
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.97 E-value=0.0075 Score=49.88 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=54.7
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|++|.|+..+. ..|.+.+=- + ......+..... ..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~~-----~~Hnv~~~~--------~--~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-----MPHNVVFVA--------D--GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEESS-----SSBEEEEET--------T--SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECCC-----CCceEEEec--------c--cccccccccccC----ccccceecCCCCEEEEEeC--
Confidence 457899999999887632 567655322 1 111000000000 1115667888888777766
Q ss_pred CceeEEEeeccccccccccEEEEEEe
Q 008351 525 NPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 525 npG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
.+|.|.|+|- - |...||-+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 5 9999999999884
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.94 E-value=0.0052 Score=51.31 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=44.8
Q ss_pred cceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeee
Q 008351 209 QIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 288 (569)
Q Consensus 209 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~ 288 (569)
.+..+++++|+.++|.+.|.+... |.|.+++... ...|.||+...+.|.+. .+|.|.+.|..
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~~~----------------~~~l~~g~~~~~~f~~~-~~G~y~~~C~~ 94 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDLGI----------------SKVLPPGETATVTFTPL-KPGEYEFYCTM 94 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGGGTE----------------EEEE-TT-EEEEEEEE--S-EEEEEB-SS
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECCCce----------------EEEECCCCEEEEEEcCC-CCEEEEEEcCC
Confidence 346899999999999999998665 7777776222 25788999999999877 89999999975
Q ss_pred c
Q 008351 289 Y 289 (569)
Q Consensus 289 ~ 289 (569)
.
T Consensus 95 ~ 95 (104)
T PF13473_consen 95 H 95 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 58
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.81 E-value=0.0085 Score=50.70 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=47.9
Q ss_pred CeEEEecCCEEEEEEEeCC-CCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhc
Q 008351 56 PTIRVHEGDTLVVHVFNES-PYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRA 134 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 134 (569)
..|++++||+|+ ++|+. ..++++..-+ ...| | .......+|++|+|.|. ++|+|=|+|-.|. ..
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~pH~-~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTFE---EPGIYLYVCVPHE-AL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEec---CCcEEEEEccCCC-CC
Confidence 689999999955 66543 4555554311 0111 1 11123578999998884 6899999997552 23
Q ss_pred cceeeEEEe
Q 008351 135 TVYGALIIR 143 (569)
Q Consensus 135 Gl~G~liV~ 143 (569)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 899999984
No 59
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.016 Score=50.75 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCC--CceeEe---------eecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCC
Q 008351 52 RLPGPTIRVHEGDTLVVHVFNESP--YNITIH---------WHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQE 120 (569)
Q Consensus 52 ~~PgP~i~~~~Gd~v~i~l~N~l~--~~~~iH---------~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~ 120 (569)
.+++-.+.++.|++++..+.|... ...++- .|...... +++- .....-+.||++-+..|.. .++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 356778999999999999999842 222222 22222221 2221 1112459999999999998 899
Q ss_pred cceeEecchhhhhc-cceeeEEEeC
Q 008351 121 GTLWWHGHVSLLRA-TVYGALIIRP 144 (569)
Q Consensus 121 Gt~wYH~H~~~~~~-Gl~G~liV~~ 144 (569)
|.|-.-|-..+.+. ||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 99999999999887 9999998864
No 60
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.61 E-value=0.014 Score=53.42 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=70.6
Q ss_pred eEEEcCcCCCCCCCCCCCCcceEEEEEcCcEEEEEEEecCCCCeEEEEEeCc-----eeEEEEecCCCC-C----ceEee
Q 008351 190 AYTINGKPGDLYPCSQNPNQIYKLKVVEGKTYLLRIINAALNNQLFFKIANH-----KFTVVSVDASYT-D----PYVTD 259 (569)
Q Consensus 190 ~~liNG~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~via~DG~~~-~----p~~~d 259 (569)
.+-+||.. .....+.|..|-++.++++|.+... |.|-+-.. ..-.++.||..+ . +....
T Consensus 75 ~~nfnGts----------~G~m~i~VPAGw~V~i~f~N~~~l~-Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~ 143 (196)
T PF06525_consen 75 PFNFNGTS----------NGQMTIYVPAGWNVQITFTNQESLP-HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYT 143 (196)
T ss_pred ceeeeccc----------CCcEEEEEcCCCEEEEEEEcCCCCC-eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccc
Confidence 67788873 2568999999999999999998554 66655321 234677777654 1 11112
Q ss_pred EEEEcCCcEEEEEEEeCCCCceeEEEeeecccCCCCCCCCcceEEEEEEcC
Q 008351 260 VVVIAPGQTTDVLLKADQPVGSYYMAARAYASAPQIPFDNTTTRGIVVYDG 310 (569)
Q Consensus 260 ~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~~~~~~~~~~~~~ail~y~~ 310 (569)
.--|.+||+....+... .+|.|||.|....+.. .++.+.|....
T Consensus 144 ~~GI~~G~s~~~~~~~l-~aG~YwlvC~ipGHA~------sGMw~~LiVs~ 187 (196)
T PF06525_consen 144 SNGISSGQSASGVYNDL-PAGYYWLVCGIPGHAE------SGMWGVLIVSS 187 (196)
T ss_pred cCCccCCceeeEEEccC-CCceEEEEccCCChhh------cCCEEEEEEec
Confidence 23456999999877544 6899999998765543 24677777654
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.57 E-value=0.012 Score=63.68 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=58.9
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCC
Q 008351 446 VKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANN 525 (569)
Q Consensus 446 ~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 525 (569)
.+.++.|+.|.+++.|.....+..|.|-+-++. --+.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~n----------------------------I~~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYG----------------------------VNMEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccC----------------------------ccEEEcCCceEEEEEEcCC
Confidence 467899999999999964334577877774431 1135668899999999999
Q ss_pred ceeEEEeecccccc-ccccEEEEEEec
Q 008351 526 PGVWFVHCHLDVHL-PWGLATAFVVEN 551 (569)
Q Consensus 526 pG~w~~HCHil~H~-d~GM~~~~~V~~ 551 (569)
||+|.+||...-|. +.+|.+.+.|.+
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 99999999885443 248888888863
No 62
>PRK02710 plastocyanin; Provisional
Probab=96.19 E-value=0.027 Score=48.28 Aligned_cols=72 Identities=25% Similarity=0.313 Sum_probs=49.3
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCC
Q 008351 446 VKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANN 525 (569)
Q Consensus 446 ~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 525 (569)
.+.++.|++|+|+ |.+. ..|.+.+.+... + ..+| ..+.+|....+.|. .
T Consensus 48 ~i~v~~Gd~V~~~--N~~~---~~H~v~~~~~~~---------~--------------~~~~-~~~~pg~t~~~tF~--~ 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNKL---APHNAVFDGAKE---------L--------------SHKD-LAFAPGESWEETFS--E 96 (119)
T ss_pred EEEEcCCCEEEEE--ECCC---CCceEEecCCcc---------c--------------cccc-cccCCCCEEEEEec--C
Confidence 4678999999986 4332 678776542210 0 0112 34677777666555 4
Q ss_pred ceeEEEeeccccccccccEEEEEEe
Q 008351 526 PGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 526 pG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
||.|.|+|= .|...||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999883
No 63
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.96 E-value=0.047 Score=55.87 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=52.2
Q ss_pred CCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCC-CcccccCCCCCeeEEEEEeCCCCcceeEecchhh
Q 008351 53 LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPN-MITQCPITPGRSYTYKFNVINQEGTLWWHGHVSL 131 (569)
Q Consensus 53 ~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~-~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~ 131 (569)
+--..+.++.|+ +++.|+|....++..-.- +|+- .-..-.|.||.+.++.+++ .+|+|=|+|-.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~- 106 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL- 106 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC-
Confidence 333689999996 899999997666432111 1110 0001259999999988776 699999999432
Q ss_pred hhccceeeEEEeCCC
Q 008351 132 LRATVYGALIIRPKS 146 (569)
Q Consensus 132 ~~~Gl~G~liV~~~~ 146 (569)
..+.|.|+|....
T Consensus 107 --~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 --TNPKGKLIVKGEA 119 (375)
T ss_pred --CCCCceEEEeCCC
Confidence 3347999998643
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.64 E-value=0.08 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=28.9
Q ss_pred EEEEeCCceeEEEeeccccccccccEEEEEEecCC
Q 008351 519 IRFQANNPGVWFVHCHLDVHLPWGLATAFVVENGP 553 (569)
Q Consensus 519 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 553 (569)
+.+.++.+|.|-|+|= .|...||-+.+.|+++.
T Consensus 58 ~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 58 YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 4466689999999998 99999999999999753
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.17 E-value=0.11 Score=45.61 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=63.0
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCCc
Q 008351 447 KTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANNP 526 (569)
Q Consensus 447 ~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 526 (569)
..++.|++++.++.|.+. .-|=|=+- ++.... +.+... ....-..--...++.|.||....+-+.+.++
T Consensus 65 ~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 65 FEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHh---hhCCccccCCcceeEeCCCCcEEEEEEecCC
Confidence 467889999999998754 34433322 111111 000000 0000001123468999999999999999999
Q ss_pred eeEEEeeccccccccccEEEEEEe
Q 008351 527 GVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 527 G~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
|.|-|-|-|-+|-+.||-..|+|.
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeC
Confidence 999999999999999999999985
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.76 E-value=0.59 Score=40.03 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=49.7
Q ss_pred ceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeec
Q 008351 210 IYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 289 (569)
Q Consensus 210 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~ 289 (569)
...+.++.|+.++|++-+. .-.|.|.+.+..+++ .+-||+.-.+.++++ .||.|.++|.-+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE--DVIHSFWIPELGIKM----------------DAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEES--SS-EEEEETTCTEEE----------------EEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcC--CccccccccccCccc----------------ccccccceeeeeeec-cCCcEEEcCccc
Confidence 3579999999999999885 445778888766554 335999999999998 899999999866
Q ss_pred ccC
Q 008351 290 ASA 292 (569)
Q Consensus 290 ~~~ 292 (569)
...
T Consensus 106 CG~ 108 (120)
T PF00116_consen 106 CGA 108 (120)
T ss_dssp SST
T ss_pred cCc
Confidence 443
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.68 E-value=0.4 Score=41.03 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=48.9
Q ss_pred CCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchh-hhh
Q 008351 55 GPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVS-LLR 133 (569)
Q Consensus 55 gP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~ 133 (569)
.+.|.++.|++|++++++.. .- ||..++.. . + +.-+-||+.....|++ +++|+|++.|..- |..
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-Vi-----Hsf~ip~~---~----~-k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VI-----HSFWIPEL---G----I-KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S------EEEEETTC---T----E-EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcCC-cc-----cccccccc---C----c-ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 37999999999999999952 22 33333221 1 1 1346789999999998 9999999999642 222
Q ss_pred -ccceeeEEE
Q 008351 134 -ATVYGALII 142 (569)
Q Consensus 134 -~Gl~G~liV 142 (569)
..|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 256676655
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.33 E-value=0.41 Score=40.64 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=55.7
Q ss_pred CCeEEEecC-CEEEEEEEeCCCCceeEeeecccccCCCC--------------CCCCCCc------ccccCCCCCeeEEE
Q 008351 55 GPTIRVHEG-DTLVVHVFNESPYNITIHWHGIFQLLSPW--------------ADGPNMI------TQCPITPGRSYTYK 113 (569)
Q Consensus 55 gP~i~~~~G-d~v~i~l~N~l~~~~~iH~HG~~~~~~~~--------------~DG~~~~------tq~~i~pG~~~~y~ 113 (569)
-..|.|..+ +.|.|+|.|....+-..=.|.+-.....- .|=+|.- ..--|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 367999984 89999999985433333333221111000 1112210 01348899999999
Q ss_pred EEeCC-CCcc-eeEecchhhhhccceeeEE
Q 008351 114 FNVIN-QEGT-LWWHGHVSLLRATVYGALI 141 (569)
Q Consensus 114 ~~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 141 (569)
|+++. ++|+ |-|-|-..+..+.|.|.+.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 99852 6786 9999988887778888875
No 69
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.48 E-value=1 Score=35.74 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=44.6
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|++|.|+ |.+. ..|-.+.+.-.+ +.. . +. ...+.++.. .++.++
T Consensus 11 ~~i~v~~GdtVt~~--N~d~---~~Hnv~~~~g~~-------~~~-------~-------~~-~~~~~~g~~--~~~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NREA---MPHNVHFVAGVL-------GEA-------A-------LK-GPMMKKEQA--YSLTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECCC---CCccEEecCCCC-------ccc-------c-------cc-ccccCCCCE--EEEECC
Confidence 45789999999985 4332 678887653211 000 0 11 112234444 346678
Q ss_pred CceeEEEeeccccccccccEEEEEEe
Q 008351 525 NPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 525 npG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
.||.|.|||=+ |- +|-+.+.|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 99999999976 55 488888763
No 70
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.93 E-value=1.1 Score=37.83 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=47.0
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|++|.|+..... ..|-. ...+.+.|+. ......++.... +.++
T Consensus 42 ~~ltV~~GdTVtw~~~~d~----~~HnV---------~s~~~~~f~s---------------~~~~~~~G~t~s--~Tf~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGEG----GGHNV---------VSDGDGDLDE---------------SERVSEEGTTYE--HTFE 91 (115)
T ss_pred CEEEECCCCEEEEEECCCC----CCEEE---------EECCCCCccc---------------cccccCCCCEEE--EEec
Confidence 3468999999999875321 34543 2222222221 111223444444 4558
Q ss_pred CceeEEEeeccccccccccEEEEEEe
Q 008351 525 NPGVWFVHCHLDVHLPWGLATAFVVE 550 (569)
Q Consensus 525 npG~w~~HCHil~H~d~GM~~~~~V~ 550 (569)
.||.|-|+|= .|...||-+.+.|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999997 89999999999884
No 71
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=91.21 E-value=2.4 Score=33.51 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=37.4
Q ss_pred EEEEEEEecCCCCeEEEEEe-CceeEEE--EecCCCC-C-------ceEeeEEEEcCCcEEEEEEEeCCC---CceeEEE
Q 008351 220 TYLLRIINAALNNQLFFKIA-NHKFTVV--SVDASYT-D-------PYVTDVVVIAPGQTTDVLLKADQP---VGSYYMA 285 (569)
Q Consensus 220 ~~rlRliN~~~~~~~~~~i~-gh~~~vi--a~DG~~~-~-------p~~~d~v~l~pgeR~dv~v~~~~~---~G~y~l~ 285 (569)
...|++.|.+... ..|.+. |+++.++ ..+|..+ + -+......|.|||...+..+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 3567888888555 666664 5554444 4466654 1 234578999999999999888863 7999875
Q ss_pred e
Q 008351 286 A 286 (569)
Q Consensus 286 ~ 286 (569)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 72
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=89.77 E-value=0.72 Score=39.21 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=52.9
Q ss_pred ceEEEEEc-CcEEEEEEEecCCCC----eEEEEEe-CceeEEEE-------ecCCCCCc----eEeeEEEEcCCcEEEEE
Q 008351 210 IYKLKVVE-GKTYLLRIINAALNN----QLFFKIA-NHKFTVVS-------VDASYTDP----YVTDVVVIAPGQTTDVL 272 (569)
Q Consensus 210 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~~~p----~~~d~v~l~pgeR~dv~ 272 (569)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.+.-|+ .|-+|+.+ +...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 35799998 589999999998543 2433332 11222222 24456632 34567789999999999
Q ss_pred EEeCC-CCc-eeEEEeee
Q 008351 273 LKADQ-PVG-SYYMAARA 288 (569)
Q Consensus 273 v~~~~-~~G-~y~l~~~~ 288 (569)
|+++. .+| +|.+.|.-
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99864 456 59999974
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=88.20 E-value=6.7 Score=35.61 Aligned_cols=96 Identities=16% Similarity=0.158 Sum_probs=59.4
Q ss_pred cceEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcC-Cc--ccccccccCCCCCccceEE------eCC
Q 008351 443 LTSVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNY-NA--ARDIKKFNLVNPQRRNTIA------VPV 513 (569)
Q Consensus 443 ~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~-~~--~~~~~~~~~~~p~~rDTv~------vp~ 513 (569)
+...+.++.|-.|.++|.|... .+|- +-++..+...- .+ ..+.+.+++ --++-. +..
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~---~pHn-------l~iv~n~t~~P~~~~~s~dgkil~~----vG~~~s~~~~NGi~~ 148 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYES---LPHN-------LKLLPNSTQTPRGPIWAHTGKIINS----TGATTSIYYGNGISS 148 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCC---CCcc-------EEEecCCCCCCCccccccCceeEee----cccccCccccccccc
Confidence 4467889999999999999753 5554 34444332110 00 001111100 001111 224
Q ss_pred CcEEEEEEEeCCceeEEEeeccccccccccEEEEEEecC
Q 008351 514 GGWAVIRFQANNPGVWFVHCHLDVHLPWGLATAFVVENG 552 (569)
Q Consensus 514 ~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 552 (569)
|....+.+..-.||.|.+=|=+.-|...||-..+.|-..
T Consensus 149 Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 149 GHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred cceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 555556666678999999999999999999999988643
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.67 E-value=6.9 Score=36.81 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=54.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchh-hhh-
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVS-LLR- 133 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~- 133 (569)
..|.+..|++|++++++.. .+ ||...+.- |+ +.-+-||..-+..|++ +++|+|...|..- |..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 6899999999999999852 12 55554432 11 2346789999999998 9999999988652 222
Q ss_pred ccceeeEEEeCCC
Q 008351 134 ATVYGALIIRPKS 146 (569)
Q Consensus 134 ~Gl~G~liV~~~~ 146 (569)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 2788888888654
No 75
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=84.81 E-value=6.1 Score=34.03 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=46.0
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeCC
Q 008351 446 VKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQANN 525 (569)
Q Consensus 446 ~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 525 (569)
.+.++-|++|+|+.... ..|-.+.=+- . .|..-+++....+.. ..+.++-
T Consensus 55 ~v~v~pGDTVtw~~~d~-----~~Hnv~~~~~---------~--------------~~~g~~~~~~~~~~s--~~~Tfe~ 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTDS-----VGHNVTAVGG---------M--------------DPEGSGTLKAGINES--FTHTFET 104 (128)
T ss_pred EEEECCCCEEEEEECCC-----CCceEEEeCC---------C--------------CcccccccccCCCcc--eEEEecc
Confidence 46789999999997532 4666543221 1 010112222222233 3355566
Q ss_pred ceeEEEeeccccccccccEEEEEEec
Q 008351 526 PGVWFVHCHLDVHLPWGLATAFVVEN 551 (569)
Q Consensus 526 pG~w~~HCHil~H~d~GM~~~~~V~~ 551 (569)
||.|.|.| ..|..+||-+.+.|++
T Consensus 105 ~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 105 PGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred cceEEEEe--ccCCCCCcEEEEEeCC
Confidence 99999999 5699999999999863
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.62 E-value=5.9 Score=37.28 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=54.8
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
+.+.++.|+.|++.+.+.+ ..|.|.+-+. +--..+-||....+.|.++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~----------------------------~~k~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPEL----------------------------GGKIDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhccccccc----------------------------CceEEecCCcEEEEEEEeC
Confidence 4578999999999998754 4566554321 1112345788888999999
Q ss_pred CceeEEEeecccccc-ccccEEEEEEecC
Q 008351 525 NPGVWFVHCHLDVHL-PWGLATAFVVENG 552 (569)
Q Consensus 525 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 552 (569)
.||.|...|-..-.. +..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGHSLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCccCCeEEEEEECH
Confidence 999999999984433 3678888887654
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.05 E-value=12 Score=36.43 Aligned_cols=65 Identities=22% Similarity=0.283 Sum_probs=49.6
Q ss_pred ceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeec
Q 008351 210 IYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 289 (569)
Q Consensus 210 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~ 289 (569)
...+.++.|++|+|++-... -.|.|.|.+-..++ ..-||...+..++++ ++|.|..+|+-+
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D--ViHsF~IP~l~~k~----------------d~iPG~~~~~~~~~~-~~G~Y~g~Cae~ 196 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD--VIHSFWIPQLGGKI----------------DAIPGMTTELWLTAN-KPGTYRGICAEY 196 (247)
T ss_pred cceEEEeCCCeEEEEEEech--hceeEEecCCCcee----------------eecCCceEEEEEecC-CCeEEEEEcHhh
Confidence 36799999999999887663 44566776555444 334899999999999 799999999977
Q ss_pred ccCC
Q 008351 290 ASAP 293 (569)
Q Consensus 290 ~~~~ 293 (569)
....
T Consensus 197 CG~g 200 (247)
T COG1622 197 CGPG 200 (247)
T ss_pred cCCC
Confidence 5443
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=77.65 E-value=9.4 Score=37.05 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=55.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhh-h-
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLL-R- 133 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~-~- 133 (569)
..|.+..|.+|+++++=. +.- ||..++... + +.-.-||...+..+++ +++|+|.-+|+.-.. .
T Consensus 137 n~l~lPv~~~V~f~ltS~-DVi-----HsF~IP~l~---~-----k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVI-----HSFWIPQLG---G-----KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhc-----eeEEecCCC---c-----eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998765 222 444443321 1 1236789999999998 999999999975322 2
Q ss_pred ccceeeEEEeCCCC
Q 008351 134 ATVYGALIIRPKSG 147 (569)
Q Consensus 134 ~Gl~G~liV~~~~~ 147 (569)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 28999999998763
No 79
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=75.59 E-value=16 Score=28.77 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=32.2
Q ss_pred eEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCC---cccccCCCCCeeEEEEEeCCC---CcceeE
Q 008351 57 TIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNM---ITQCPITPGRSYTYKFNVINQ---EGTLWW 125 (569)
Q Consensus 57 ~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~---~tq~~i~pG~~~~y~~~~~~~---~Gt~wY 125 (569)
+|+..-|++..+.|.|...+.+- .|++|..+ +.+.-|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~vw-----------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKEVW-----------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--EEE-----------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCEEE-----------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 56666677777777765433322 46777653 234679999999999999733 688754
No 80
>COG1470 Predicted membrane protein [Function unknown]
Probab=75.30 E-value=1.2e+02 Score=32.21 Aligned_cols=180 Identities=18% Similarity=0.291 Sum_probs=100.4
Q ss_pred EEEecCCE--EEEEEEeCC--CCceeEeeecccc-cCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhh
Q 008351 58 IRVHEGDT--LVVHVFNES--PYNITIHWHGIFQ-LLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLL 132 (569)
Q Consensus 58 i~~~~Gd~--v~i~l~N~l--~~~~~iH~HG~~~-~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~ 132 (569)
+.+.++++ +.|++.|+. +....+-.-|+.- -...|-+|--.++...+.|||+.+....+-.. ...
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps----------~na 347 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPS----------LNA 347 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecC----------CCC
Confidence 45556655 667777885 4455555555421 11222366666777889999999888877210 001
Q ss_pred hccceeeEEEeCCCCCCCCCCCCCCceeEEeeeeeccCHHHHHHHHHhcCCCCCCCceEEEcCcCCCCCCCCCCCCcceE
Q 008351 133 RATVYGALIIRPKSGHEYPYPKPDKEVPILLGEWWNANVVDVENQAQITGGAPNISDAYTINGKPGDLYPCSQNPNQIYK 212 (569)
Q Consensus 133 ~~Gl~G~liV~~~~~~~~~~~~~d~e~~l~l~d~~~~~~~~~~~~~~~~g~~~~~~~~~liNG~~~~~~~~~~~~~~~~~ 212 (569)
+.|.|-..|+-.... ...++.++.+.- .|. .....-+-||. ..
T Consensus 348 ~pG~Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~--~~~~v~l~~g~--------------~~ 390 (513)
T COG1470 348 TPGTYNVTITASSSS------GVTRELPLKIKN---------------TGS--YNELVKLDNGP--------------YR 390 (513)
T ss_pred CCCceeEEEEEeccc------cceeeeeEEEEe---------------ccc--cceeEEccCCc--------------EE
Confidence 124445444443321 122344444421 011 01112334454 56
Q ss_pred EEEEcCc--EEEEEEEecCCCCe--EEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEE--EEEeCC--CCceeEE
Q 008351 213 LKVVEGK--TYLLRIINAALNNQ--LFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDV--LLKADQ--PVGSYYM 284 (569)
Q Consensus 213 ~~v~~G~--~~rlRliN~~~~~~--~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv--~v~~~~--~~G~y~l 284 (569)
+++.+|+ .++++|-|.|+... +.+.+++-.=|-+.+|+..+. .|.||||-.| .++++. .+|+|.+
T Consensus 391 lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~-------sL~pge~~tV~ltI~vP~~a~aGdY~i 463 (513)
T COG1470 391 LTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIP-------SLEPGESKTVSLTITVPEDAGAGDYRI 463 (513)
T ss_pred EEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECccccc-------ccCCCCcceEEEEEEcCCCCCCCcEEE
Confidence 7777875 56899999996553 456676666677787777442 2456665554 455543 4688988
Q ss_pred Eeeeccc
Q 008351 285 AARAYAS 291 (569)
Q Consensus 285 ~~~~~~~ 291 (569)
......+
T Consensus 464 ~i~~ksD 470 (513)
T COG1470 464 TITAKSD 470 (513)
T ss_pred EEEEeec
Confidence 7766443
No 81
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=69.42 E-value=37 Score=31.68 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeeccc
Q 008351 212 KLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 291 (569)
Q Consensus 212 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~ 291 (569)
.+.++.|+.+||++-... -.|.|.+.+...++ ..-||..-.+.+.++ .+|.|...|.-+..
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~k~----------------d~~PG~~~~~~~~~~-~~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNLKM----------------DAIPGRINHLFFCPD-RHGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCcee----------------ecCCCceEEEEEEcC-CCEEEEEEeehhhC
Confidence 588999999999886554 34556665443332 223899999999888 78999999987654
Q ss_pred C
Q 008351 292 A 292 (569)
Q Consensus 292 ~ 292 (569)
.
T Consensus 178 ~ 178 (194)
T MTH00047 178 V 178 (194)
T ss_pred c
Confidence 3
No 82
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=68.41 E-value=14 Score=38.11 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=44.3
Q ss_pred cceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeee
Q 008351 209 QIYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 288 (569)
Q Consensus 209 ~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~ 288 (569)
....++|+.|+ +.|.+.|.+... +.|.++. |..+. ...=.|.||.+..+.+.+ .||+|.+.|..
T Consensus 42 ~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~ 105 (375)
T PRK10378 42 EPMTLTVNAGK-TQFIIQNHSQKA--------LEWEILK--GVMVV---EERENIAPGFSQKMTANL--QPGEYDMTCGL 105 (375)
T ss_pred ccCceeeCCCC-EEEEEEeCCCCc--------ceEEeec--ccccc---ccccccCCCCceEEEEec--CCceEEeecCc
Confidence 34789999996 899999998544 3444442 22210 012378999888887777 48999999944
No 83
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=68.01 E-value=42 Score=34.10 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.9
Q ss_pred ccccCCCCCeeEEEEEe
Q 008351 100 TQCPITPGRSYTYKFNV 116 (569)
Q Consensus 100 tq~~i~pG~~~~y~~~~ 116 (569)
.+.||.|||+.+.+.++
T Consensus 336 d~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 336 DQSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCCcCCCcceEEEEEE
Confidence 34689999999999998
No 84
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=67.36 E-value=10 Score=39.36 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=49.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecchh-h-hh
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVS-L-LR 133 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~-~~ 133 (569)
-++.|+.||.|.+.++|-....-.+ ||.-.+. -|+. .-+.|-++-.|.|.+ ..+|-+||.|--. . ..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 3778888898888888875443333 3332221 2332 247888899999998 8999999877321 1 11
Q ss_pred ccceeeEEEe
Q 008351 134 ATVYGALIIR 143 (569)
Q Consensus 134 ~Gl~G~liV~ 143 (569)
.-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 2456666665
No 85
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=66.11 E-value=66 Score=25.64 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=39.7
Q ss_pred EEEcCcEE--EEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEE-EEcCCcEEEEEEEeCC-CCceeEEEeeec
Q 008351 214 KVVEGKTY--LLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVV-VIAPGQTTDVLLKADQ-PVGSYYMAARAY 289 (569)
Q Consensus 214 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~-~~G~y~l~~~~~ 289 (569)
.+..|+.+ .+.+.|.|....-.+.+. +-.||..+ ....| .|.+|+...+.+.... .+|.|.+.+...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 45566665 478889987654444332 23455443 33445 7899999888877663 678998877653
No 86
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.38 E-value=27 Score=33.59 Aligned_cols=62 Identities=11% Similarity=0.153 Sum_probs=45.7
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++.+.. -.|.|.+.+...++ ..-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~l~lP~~~~v~~~~ts~D--ViHsf~ip~~~~k~----------------d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD--VIHSWTVPSLGVKV----------------DAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc--cccceeccccCcee----------------ECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 4689999999999998854 34555665443333 224898888889888 7999999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (228)
T MTH00140 201 G 201 (228)
T ss_pred C
Confidence 3
No 87
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=60.59 E-value=81 Score=25.07 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCeEEEec---CCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEe
Q 008351 55 GPTIRVHE---GDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWH 126 (569)
Q Consensus 55 gP~i~~~~---Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH 126 (569)
.|.+.++. ...|+|+|.|.......+........ .+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 45555542 35899999999888777766653211 1222 346799999999999872 2334664
No 88
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=58.84 E-value=9.6 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred ChhhhHHHHHHHHHHHhhcccccceEEEEEEEEEEE
Q 008351 1 MERSMLLLAFASVLIVSSTLASAAIVEHSFHVKNLT 36 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 36 (569)
|.||+++++++++.+-.|-+|....+.-..++++-.
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRSVtveqPs 36 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRSVTVEQPS 36 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccccccceeecCCc
Confidence 889988877666655555555545554455555543
No 89
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=58.57 E-value=44 Score=25.13 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=37.7
Q ss_pred ceEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEee
Q 008351 210 IYKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAAR 287 (569)
Q Consensus 210 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~ 287 (569)
-..++++.|+++++.+-+.+. ...+.+...+|..+....... -..+..-.+.+.+. .+|+|.|+..
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 467899999999988866664 223566666655331110000 01122333445555 7899998764
No 90
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=55.16 E-value=80 Score=27.61 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=44.4
Q ss_pred cEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEe-------eEEEEcCCcEE-EEEEEeCCCCceeEEEe
Q 008351 219 KTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVT-------DVVVIAPGQTT-DVLLKADQPVGSYYMAA 286 (569)
Q Consensus 219 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~-------d~v~l~pgeR~-dv~v~~~~~~G~y~l~~ 286 (569)
.+|-|-+-|.|... +.++...++|+ +||+.+.|..+ +++.|.|||-. ++.+.-. ..|.-.+..
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSGyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSGYHRIVV 140 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCcceEEEE
Confidence 47889999999655 56688888887 89988855432 57789999987 6666554 335444443
No 91
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=54.61 E-value=43 Score=27.85 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=41.9
Q ss_pred EEEEEeCCCCceeEeeecccccCCCCCC-CCCCcccccCCCCCeeEEEEEeCCCCcceeEecchhhhhccceeeEEEeC
Q 008351 67 VVHVFNESPYNITIHWHGIFQLLSPWAD-GPNMITQCPITPGRSYTYKFNVINQEGTLWWHGHVSLLRATVYGALIIRP 144 (569)
Q Consensus 67 ~i~l~N~l~~~~~iH~HG~~~~~~~~~D-G~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~ 144 (569)
.|+++|.|.....|..|--.-.. | |+ ..+.||+++.+.|.. +-.|+--|.|+..-.......-+.|..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d~----Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKDD----DLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCCc----cCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEe
Confidence 58899999655555555543211 2 22 358999999999986 555666677876541111345555543
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=54.38 E-value=97 Score=23.79 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=30.1
Q ss_pred EcCcE--EEEEEEecCCCC--eEEEEEeCceeEEEEecCCCC--CceEeeEEEEcCCcEEEEEEEeC--C--CCceeEEE
Q 008351 216 VEGKT--YLLRIINAALNN--QLFFKIANHKFTVVSVDASYT--DPYVTDVVVIAPGQTTDVLLKAD--Q--PVGSYYMA 285 (569)
Q Consensus 216 ~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~--~p~~~d~v~l~pgeR~dv~v~~~--~--~~G~y~l~ 285 (569)
++|+. +.+.+-|.+... ...+++. .=+|-.+ .+..+. .|.|||...+.++.. . .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 45555 467888988543 2344443 1222221 233333 889997777665543 2 47999887
Q ss_pred eee
Q 008351 286 ARA 288 (569)
Q Consensus 286 ~~~ 288 (569)
...
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 93
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=53.60 E-value=45 Score=32.02 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=44.6
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+|+++.+.. -.|.|.+.+..+++- .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~~~~k~d----------------aiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD--VIHSWTVPSLGVKVD----------------AVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCC--ccccccccccCccee----------------cCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 4688999999999988854 335555554443331 23898888888888 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (228)
T MTH00008 201 G 201 (228)
T ss_pred C
Confidence 3
No 94
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=51.87 E-value=37 Score=27.46 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=40.0
Q ss_pred EEEcCcEEEEEEE--ecCCCCeEEEEEeCc--eeEEEEecCCCCCceEeeEE-EEcCCcEEEEEEEeCCC--CceeEEEe
Q 008351 214 KVVEGKTYLLRII--NAALNNQLFFKIANH--KFTVVSVDASYTDPYVTDVV-VIAPGQTTDVLLKADQP--VGSYYMAA 286 (569)
Q Consensus 214 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~~--~G~y~l~~ 286 (569)
.-+|||++.+|.+ +... ... ...+. .++|..-+|..+. .... .......++..+.++++ .|.|.|++
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~~--~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DFK--PPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TCS--CESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-ccc--cccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 3578999999999 6652 101 11222 3555555555431 1222 33567788888888764 49999988
Q ss_pred eec
Q 008351 287 RAY 289 (569)
Q Consensus 287 ~~~ 289 (569)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 764
No 95
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=50.82 E-value=65 Score=28.97 Aligned_cols=62 Identities=10% Similarity=0.128 Sum_probs=42.5
Q ss_pred EEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeeccc
Q 008351 212 KLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAS 291 (569)
Q Consensus 212 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~~ 291 (569)
.+.+..|+.+||++..+.. .|.|.+....+++=+ -||..-.+.+.+. .+|.|...|.-+..
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~Da----------------vPGr~n~l~~~~~-~~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV--IHSWSVPSLGIKADA----------------IPGRLHKINTFIL-REGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc--ceeeeccccCceeec----------------cCCceEEEEEecC-CCeEEEEEcchhcC
Confidence 4788999999887766543 355666544333322 2777777777777 79999999986544
Q ss_pred C
Q 008351 292 A 292 (569)
Q Consensus 292 ~ 292 (569)
.
T Consensus 135 ~ 135 (162)
T PTZ00047 135 T 135 (162)
T ss_pred c
Confidence 3
No 96
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=48.65 E-value=1.6e+02 Score=24.67 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=21.4
Q ss_pred CceeEEEEecCCCC--CceEeeEEEEcCCcEEEEEEEeC
Q 008351 240 NHKFTVVSVDASYT--DPYVTDVVVIAPGQTTDVLLKAD 276 (569)
Q Consensus 240 gh~~~via~DG~~~--~p~~~d~v~l~pgeR~dv~v~~~ 276 (569)
.+++++...++... .+....++.|.+|..|.+.+.-.
T Consensus 44 ~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 44 TYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred eEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 34556654444432 24455667777777777776654
No 97
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=48.57 E-value=30 Score=30.75 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=39.2
Q ss_pred cceEEEEEEEEEEEeccCceeeEEEEEcCCC-CCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCC
Q 008351 23 AAIVEHSFHVKNLTIGRLCRQRVITAVNGRL-PGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPN 97 (569)
Q Consensus 23 ~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~-PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~ 97 (569)
.....|-++.++...... .....+-+.|.+ +|..-+. .|..++.+++-. .....++..|. .+..+.+|..
T Consensus 31 ~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 31 RQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred HhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 333446665555543322 223334444544 4544343 777888888776 56678888886 3444556654
No 98
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=47.70 E-value=29 Score=29.16 Aligned_cols=54 Identities=20% Similarity=0.172 Sum_probs=30.6
Q ss_pred EEEEeCCCCc---eeEeeecccccCCC---CCCCCCCcccccCCCCCeeEEEEEeC--CCCcc
Q 008351 68 VHVFNESPYN---ITIHWHGIFQLLSP---WADGPNMITQCPITPGRSYTYKFNVI--NQEGT 122 (569)
Q Consensus 68 i~l~N~l~~~---~~iH~HG~~~~~~~---~~DG~~~~tq~~i~pG~~~~y~~~~~--~~~Gt 122 (569)
|++.|....+ .+=|||=-...+.. .-+||-| .|--|+||++|+|.=-.+ .+.|+
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 6777776544 46688843222110 0144433 356799999999875432 34444
No 99
>PRK10449 heat-inducible protein; Provisional
Probab=47.47 E-value=35 Score=29.96 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=22.4
Q ss_pred ChhhhHHHHHHHHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCC
Q 008351 1 MERSMLLLAFASVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRL 53 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~ 53 (569)
|+|-++++++++++.+|+....... ......+....+..+||+-
T Consensus 1 mk~~~~~~~~~~~l~~C~~~~~~~~---------~~~~L~~~~W~L~~i~G~~ 44 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVSSGKISV---------TPEQLQHHRFVLESVNGKP 44 (140)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCCc---------CHHHcCCceEEEEEECCEE
Confidence 6766656655666555555332210 0123345555556667653
No 100
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.27 E-value=11 Score=32.60 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred ChhhhHHHHHHHHHHHhhcccccceE
Q 008351 1 MERSMLLLAFASVLIVSSTLASAAIV 26 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (569)
|+|.+++.+++++++++++..++..-
T Consensus 1 M~rf~~i~lL~~A~lls~plva~e~p 26 (166)
T COG3495 1 MNRFTSITLLAAALLLSAPLVAAETP 26 (166)
T ss_pred CchhHHHHHHHHHHHhcchhhhcccc
Confidence 88999988888887777776665555
No 101
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=46.78 E-value=49 Score=31.71 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=43.1
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++-..... |.|.+..-..+ .| .-||..-.+.++++ .+|.|..+|.-+.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--HSF~VP~l~~K-------------~D---aiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--NSFFIPQLGSQ-------------IY---AMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--hhhhhhhcCCe-------------ee---cCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 468899999999888766532 33444322211 22 23898888889988 7999999998654
Q ss_pred cC
Q 008351 291 SA 292 (569)
Q Consensus 291 ~~ 292 (569)
..
T Consensus 200 G~ 201 (226)
T TIGR01433 200 GP 201 (226)
T ss_pred Cc
Confidence 43
No 102
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=45.81 E-value=54 Score=28.31 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=33.6
Q ss_pred EEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC----CceEeeEEEEcCCcEEEE
Q 008351 220 TYLLRIINAALNNQLFFKIANHKFTVVSVDASYT----DPYVTDVVVIAPGQTTDV 271 (569)
Q Consensus 220 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~v~l~pgeR~dv 271 (569)
.|++||.|.+.. .+.|-...+.+...||... ..+-...=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 588999998854 3667778888888877643 233445567788876654
No 103
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.28 E-value=91 Score=29.93 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=54.2
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
+.+.++.|+.|++.+.+.+ ..|.|.+=.... . +..-||....+.|.++
T Consensus 140 n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~-------------------------k---~d~~Pg~~~~~~~~~~ 187 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV-------------------------K---VDAIPGRLNQLSFEPK 187 (228)
T ss_pred CeEEEeeCcEEEEEEEcCc----cccceeccccCc-------------------------e---eECCCCcceeEEEEeC
Confidence 4578899999999998754 566655432211 1 2334677788889999
Q ss_pred CceeEEEeecccccc-ccccEEEEEEecC
Q 008351 525 NPGVWFVHCHLDVHL-PWGLATAFVVENG 552 (569)
Q Consensus 525 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 552 (569)
.||.+...|.-+-.. +..|-..++|.+.
T Consensus 188 ~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 188 RPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 999999999988766 4556677776543
No 104
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=45.17 E-value=66 Score=30.88 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=42.9
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+||++.-.. -.|.|.+....+++ | .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~lg~k~-------------d---aiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED--VLHSWAVPSLGLKT-------------D---AIPGRLNQTTLMST-RPGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECc--ccccccccccccce-------------e---cCCCceEEEEEecC-CcEEEEEECcccc
Confidence 3678899999988876654 33445555433332 2 23888888888888 7999999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (227)
T MTH00098 201 G 201 (227)
T ss_pred C
Confidence 3
No 105
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.78 E-value=1.8e+02 Score=27.16 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=54.1
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|+.+++.+... +..|.|.+-.... .+|.+ ||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d~~---PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMDAI---PGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eeecC---CCceEEEEEEcC
Confidence 346789999999999754 3677766643211 23443 778888999999
Q ss_pred CceeEEEeecccccc-ccccEEEEEEecC
Q 008351 525 NPGVWFVHCHLDVHL-PWGLATAFVVENG 552 (569)
Q Consensus 525 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 552 (569)
.+|.+-.-|.-+-=. +..|-..++|.++
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 999999999887644 4556667766543
No 106
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=44.76 E-value=1.6e+02 Score=25.32 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=42.0
Q ss_pred EEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC-------CceEeeEEEEcCCcEEEEEEEeCC
Q 008351 212 KLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYT-------DPYVTDVVVIAPGQTTDVLLKADQ 277 (569)
Q Consensus 212 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~l~pgeR~dv~v~~~~ 277 (569)
.|.+..--.|+|++-..+ ...|.|+|.. ||..++..- .+....++.|..|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 366766667999998444 3667888765 466666543 355677889999999999998764
No 107
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=43.71 E-value=37 Score=27.34 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=28.3
Q ss_pred EEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC----CceEeeEEEEcCCcEEEE
Q 008351 220 TYLLRIINAALNNQLFFKIANHKFTVVSVDASYT----DPYVTDVVVIAPGQTTDV 271 (569)
Q Consensus 220 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~v~l~pgeR~dv 271 (569)
.|++||-|.+... +.|-...+.|...||... ..+-...=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 5899999998763 566666777777776432 112234557888886655
No 108
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=41.32 E-value=1.7e+02 Score=25.07 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=38.7
Q ss_pred EEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC-CceEeeEEEEcCCcEEEEEEEeCCC
Q 008351 212 KLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYT-DPYVTDVVVIAPGQTTDVLLKADQP 278 (569)
Q Consensus 212 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pgeR~dv~v~~~~~ 278 (569)
.|++...-.|+|.+...+ ...+.|+|. .||..++..- .+.....+.|..|++|.|.|...+.
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 355554456899885433 356788875 3455444332 2334457888899999998887643
No 109
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.84 E-value=79 Score=30.39 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=43.5
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+|+++.-.. -.|.|.+.+..+++ ..-||.+-.+.+.++ .+|.|+..|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~ip~~~~k~----------------da~PG~~~~~~~~~~-~~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED--VLHSWAVPALGVKM----------------DAVPGRLNQTAFIAS-RPGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCc--cccceeccccCCcc----------------ccCCCceEEEEEEeC-CceEEEEEChhhc
Confidence 3688999999988876654 33455555433322 223898888888888 7999999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (230)
T MTH00129 201 G 201 (230)
T ss_pred c
Confidence 3
No 110
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.78 E-value=93 Score=30.00 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=43.6
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+|+++-.+. -.|.|.+.+..+++ | .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 144 n~lvlP~~~~v~~~itS~D--ViHsf~vp~lg~k~-------------d---aiPG~~~~~~~~~~-~~G~y~g~Cse~C 204 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD--VLHSFAVPSLSVKI-------------D---AVPGRLNQTSFFIK-RPGVFYGQCSEIC 204 (234)
T ss_pred eEEEEecCcEEEEEEEeCc--hhccccccccCcee-------------E---ccCCceEeEEEEeC-CCEEEEEEChhhc
Confidence 4688999999999888764 33455555443333 2 23888888888888 7899999998654
No 111
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=39.67 E-value=2.7e+02 Score=24.68 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=34.1
Q ss_pred CeEEEecCCEEEEEEEeCCCC-----ceeEeee--c-cccc-CCCCCCCCCCc-----ccccCCCCCeeEEEEEeC
Q 008351 56 PTIRVHEGDTLVVHVFNESPY-----NITIHWH--G-IFQL-LSPWADGPNMI-----TQCPITPGRSYTYKFNVI 117 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~-----~~~iH~H--G-~~~~-~~~~~DG~~~~-----tq~~i~pG~~~~y~~~~~ 117 (569)
+.=.+..|.+..|.+.=...+ .+.+|.- | ..++ +....||-... --||+.+||.++|.+..+
T Consensus 48 ~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 48 TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 355667777666555444322 2333322 1 1111 11224664432 349999999999999874
No 112
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=39.25 E-value=67 Score=30.55 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=43.0
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++-.... .|.|.+..-..+ .| .-||..-.+.++++ .+|.|...|.-+.
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~vP~l~~k-------------~d---aiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWIPQLGGQ-------------KY---AMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhchhhCce-------------ee---cCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 46788889988888876653 334444322222 22 23898889999988 7899999998654
Q ss_pred cC
Q 008351 291 SA 292 (569)
Q Consensus 291 ~~ 292 (569)
..
T Consensus 191 G~ 192 (217)
T TIGR01432 191 GE 192 (217)
T ss_pred Cc
Confidence 33
No 113
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=38.63 E-value=1.4e+02 Score=25.62 Aligned_cols=63 Identities=14% Similarity=0.304 Sum_probs=45.7
Q ss_pred EEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCc----eeEEEee
Q 008351 221 YLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVG----SYYMAAR 287 (569)
Q Consensus 221 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G----~y~l~~~ 287 (569)
..|-+-|.+....+.+ .+..-...||..++.+..+.+.|.|-+..+++|+-++..| +|.+...
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~GGsGANFiv~W~ 93 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTSGGSGANFIVEWS 93 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccCCCCccceEEEEEe
Confidence 3466667775554433 3667788999999999899999999999999998775322 4555443
No 114
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=38.17 E-value=1.3e+02 Score=25.76 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=42.5
Q ss_pred EEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceE----eeEEEEcCCcEEEEEEEeCC--CCceeEEEe
Q 008351 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYV----TDVVVIAPGQTTDVLLKADQ--PVGSYYMAA 286 (569)
Q Consensus 213 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~----~d~v~l~pgeR~dv~v~~~~--~~G~y~l~~ 286 (569)
-.+..|+.+++++-=......-.+.+ .+.+...+|..+-... ...+....++++.+.++++. .+|.|.+.+
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 34777888888776665444333332 5667777776652111 12444444889999888875 689999988
Q ss_pred ee
Q 008351 287 RA 288 (569)
Q Consensus 287 ~~ 288 (569)
..
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 115
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=38.15 E-value=1.7e+02 Score=27.96 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=30.7
Q ss_pred eEEEEEcCcEEEEEEEecCCCCe--EEEEEeCceeEEEEecCCCCC
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQ--LFFKIANHKFTVVSVDASYTD 254 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~--~~~~i~gh~~~via~DG~~~~ 254 (569)
..+-+++| +|.||+|..+-... ..+.| +.-+.++|+|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeE
Confidence 46789998 69999998873332 23333 567899999999873
No 116
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.74 E-value=1.2e+02 Score=29.07 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=43.5
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+||++-.+. -.|.|.+....+++ |. -||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vp~l~~k~-------------da---vPG~~~~~~~~~~-~~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD--VIHSWTVPSLGVKV-------------DA---VPGRLNQLNFLIN-RPGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCc--hhhheeccccCCee-------------ec---CCCceEEEEEEEc-CceEEEEEeechh
Confidence 4688999999998876554 34555555433332 22 2888888888888 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (227)
T MTH00154 201 G 201 (227)
T ss_pred C
Confidence 3
No 117
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.78 E-value=1.2e+02 Score=29.33 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=43.5
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++-.. .-.|.|.+....+++-| -||..-.+.+.++ .+|.|...|.-+.
T Consensus 151 n~lvlP~~~~v~~~~tS~--DViHsf~iP~lgvK~Da----------------iPG~~n~~~~~~~-~~G~y~g~C~e~C 211 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA--DVLHSFAVPSLGLKIDA----------------VPGRLNQTGFFIK-RPGVFYGQCSEIC 211 (240)
T ss_pred ceEEEecCCEEEEEEEcC--CcccceeecccCceeec----------------CCCcceeEEEEcC-CCEEEEEEchhhc
Confidence 368899999888877655 34456666654444422 2787777788877 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 212 G 212 (240)
T MTH00023 212 G 212 (240)
T ss_pred C
Confidence 3
No 118
>PRK13792 lysozyme inhibitor; Provisional
Probab=36.71 E-value=1.2e+02 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=9.1
Q ss_pred CCEEEEEEEeCCCC
Q 008351 63 GDTLVVHVFNESPY 76 (569)
Q Consensus 63 Gd~v~i~l~N~l~~ 76 (569)
|.++.|++.|..+.
T Consensus 54 ~~~~tV~y~n~~~~ 67 (127)
T PRK13792 54 GRKFTVQYLNKGDN 67 (127)
T ss_pred CCEEEEEEeCCCCC
Confidence 45677777776544
No 119
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=36.09 E-value=35 Score=31.41 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=16.4
Q ss_pred ChhhhHHHHHHHHHHHhhcccccceEEEEEEEEEEE
Q 008351 1 MERSMLLLAFASVLIVSSTLASAAIVEHSFHVKNLT 36 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 36 (569)
|+|..+ ++++++++.|..|.|. ++++.+.+..
T Consensus 1 m~k~~~--a~~~~l~~~s~~a~A~--~~~~~~g~~~ 32 (180)
T PF07437_consen 1 MKKFLL--ASAAALLLVSASANAI--SLSLNLGNDY 32 (180)
T ss_pred CchHHH--HHHHHHHHHhhhhhee--ecceeccCce
Confidence 666644 3344445555555554 4555555543
No 120
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.96 E-value=1.2e+02 Score=29.05 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=43.3
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+|+++--.. -.|.|.+.+...++- .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k~d----------------aiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED--VLHSWTVPALGVKMD----------------AVPGRLNQATFIIS-RPGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCc--ccccccccccCceeE----------------ecCCceEEEEEEeC-CcEEEEEEchhhc
Confidence 4688999998888876554 345555554433332 23888888888887 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (230)
T MTH00185 201 G 201 (230)
T ss_pred C
Confidence 3
No 121
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=35.43 E-value=1.1e+02 Score=29.39 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=53.0
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
+-+.++.|+.|++.+...+ ..|.| +|=+-+ ..+|.+ ||-...+.|++|
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHSF-------~VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNSF-------FIPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhhh-------hhhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 3467899999999998643 55664 443321 134654 677788999999
Q ss_pred CceeEEEeecccccc-ccccEEEEEEecC
Q 008351 525 NPGVWFVHCHLDVHL-PWGLATAFVVENG 552 (569)
Q Consensus 525 npG~w~~HCHil~H~-d~GM~~~~~V~~~ 552 (569)
.||.|.-.|--.-=. +..|...++|.+.
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 999999999766543 3566677766543
No 122
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=34.97 E-value=32 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=26.3
Q ss_pred EEEEcCCCCCCeEEEecCCEEEEEEEeCCCC
Q 008351 46 ITAVNGRLPGPTIRVHEGDTLVVHVFNESPY 76 (569)
Q Consensus 46 ~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~ 76 (569)
-+.+||+.--|-=.|+.||.|+|++.|..-.
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 3569999878999999999999999998543
No 123
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=34.81 E-value=61 Score=22.62 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCCCccce-EEeCCCcEEEEEEEeCCceeEEEeecccccccc
Q 008351 501 VNPQRRNT-IAVPVGGWAVIRFQANNPGVWFVHCHLDVHLPW 541 (569)
Q Consensus 501 ~~p~~rDT-v~vp~~g~~~irf~adnpG~w~~HCHil~H~d~ 541 (569)
..|..+-+ |..+.|....++++-.....+=+||..+-|.+.
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 34444443 345678888999999999999999999999864
No 124
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=34.79 E-value=28 Score=20.65 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=6.9
Q ss_pred hhhhHHHHHHHHHHHhh
Q 008351 2 ERSMLLLAFASVLIVSS 18 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (569)
+|-.+++.+++.+++||
T Consensus 8 Kkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 8 KKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34433444333344443
No 125
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=34.60 E-value=81 Score=23.43 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEE
Q 008351 213 LKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVS 247 (569)
Q Consensus 213 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 247 (569)
+.+.+|+..+||..... .+.+.+-.+|+..
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~ 31 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR 31 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC
Confidence 56678888888855443 3667777788754
No 126
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.35 E-value=1.3e+02 Score=28.95 Aligned_cols=61 Identities=15% Similarity=0.185 Sum_probs=42.5
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
-.+.+..|+.+||++.-.. -.|.|.+.+..+++ | .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~k~-------------d---a~PG~~n~~~~~~~-~~G~~~g~C~e~C 200 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED--VLHSWAVPSLGIKT-------------D---AIPGRLNQTSFIAS-RPGVYYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEecc--ccccccccccCceE-------------E---ccCCcceeEEEEeC-CcEEEEEEChhhc
Confidence 3688999999998886654 34555555443333 2 13787777778887 7899999998654
No 127
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=34.18 E-value=2.3e+02 Score=22.13 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=14.3
Q ss_pred EEcCcEEEEEEEecCCCCeEEEEE
Q 008351 215 VVEGKTYLLRIINAALNNQLFFKI 238 (569)
Q Consensus 215 v~~G~~~rlRliN~~~~~~~~~~i 238 (569)
.+.||+++|++-..-....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 467888888887744333333444
No 128
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.40 E-value=1.2e+02 Score=25.46 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=27.1
Q ss_pred EEEEEEEecCCCC-eEEEEEeCc-eeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeC
Q 008351 220 TYLLRIINAALNN-QLFFKIANH-KFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKAD 276 (569)
Q Consensus 220 ~~rlRliN~~~~~-~~~~~i~gh-~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~ 276 (569)
.|+++|+|-+... .+.+.++|. .+++. ...+.+.|.+|+..++.|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 5899999999666 356666663 23331 124788899998888765544
No 129
>PRK13202 ureB urease subunit beta; Reviewed
Probab=33.36 E-value=1.3e+02 Score=24.69 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=38.0
Q ss_pred EEEEEcC--cEEEEEEEecCCCCeEEEEEeCceeEE--------EEecCCCCCceEeeEEEEcCCcEEEEEEEe
Q 008351 212 KLKVVEG--KTYLLRIINAALNNQLFFKIANHKFTV--------VSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275 (569)
Q Consensus 212 ~~~v~~G--~~~rlRliN~~~~~~~~~~i~gh~~~v--------ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~ 275 (569)
.+.+.+| +++.+++.|.| .+.+.+.-|-|-+++ -++=|..+.=....++...|||.-+|.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4777788 47899999999 454544333333222 222232232223467888889888887654
No 130
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=31.81 E-value=3.2e+02 Score=24.66 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=50.8
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|..+++.+.... ..|.|.+-.. | ...|.+ ||-...+.+.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~D----VIHSF~VP~l-------g------------------vK~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATD----VIHSWSVPSL-------G------------------IKADAI---PGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeCc----cceeeecccc-------C------------------ceeecc---CCceEEEEEecC
Confidence 4467899999999997543 5677665432 1 123433 677777889999
Q ss_pred CceeEEEeeccccccc-cccEEEEEEec
Q 008351 525 NPGVWFVHCHLDVHLP-WGLATAFVVEN 551 (569)
Q Consensus 525 npG~w~~HCHil~H~d-~GM~~~~~V~~ 551 (569)
.+|.|...|.-+-=.. ..|-..++|.+
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999998776333 34556666543
No 131
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=30.85 E-value=1.7e+02 Score=24.75 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=17.1
Q ss_pred EEecCCEEEEEEEeCCCCceeE
Q 008351 59 RVHEGDTLVVHVFNESPYNITI 80 (569)
Q Consensus 59 ~~~~Gd~v~i~l~N~l~~~~~i 80 (569)
.+++||+|+++|.......+.+
T Consensus 88 ~lk~G~~V~F~~~~~~~~~~i~ 109 (115)
T PRK09838 88 EIKTGDKVAFNFVQQGNLSLLQ 109 (115)
T ss_pred cCCCCCEEEEEEEEcCCcEEEE
Confidence 5789999999999876655443
No 132
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=30.84 E-value=1e+02 Score=31.58 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhhcccc-----------------------cceEEEEEEEEEEEeccCceeeEE---EEEcCCCCC
Q 008351 2 ERSMLLLAFASVLIVSSTLAS-----------------------AAIVEHSFHVKNLTIGRLCRQRVI---TAVNGRLPG 55 (569)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~g~~~~~---~~~NG~~Pg 55 (569)
+|-.+.++++.+++++.+.+. ......+..++.......|++..+ ++=||.-|
T Consensus 200 rkv~~~~~~~tl~lV~~g~~~t~~~yP~tIPlQag~~~~i~pl~~~~~~V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p- 278 (381)
T PF04744_consen 200 RKVGIAFLAGTLVLVIGGYAYTNSKYPITIPLQAGLLRPIKPLPVPPNSVKVKVTDATYRVPGRTLTMTLTVTNNGDSP- 278 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHSSSS------S-BS------SS-SSEEEEEEEEEEESSSSEEEEEEEEEEESSS--
T ss_pred ceeehhHHHHHHHHHhhhHhhhhhcCCCccccccccccCcccCCCCCCceEEEEeccEEecCCcEEEEEEEEEcCCCCc-
Q ss_pred CeEEEecCCEEEEEEEeCCCCcee-------EeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCC
Q 008351 56 PTIRVHEGDTLVVHVFNESPYNIT-------IHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQE 120 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~~~~~-------iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~ 120 (569)
+++.+=.+-.||+.|..-.... +---|+.+.+. .||+|||+.+.+.++ +.+
T Consensus 279 --v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~-----------~pI~PGETrtl~V~a-~dA 336 (381)
T PF04744_consen 279 --VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN-----------SPIAPGETRTLTVEA-QDA 336 (381)
T ss_dssp --BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES-------------S-B-TT-EEEEEEEE-E-H
T ss_pred --eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-----------CCcCCCceEEEEEEe-ehh
No 133
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.24 E-value=1.9e+02 Score=27.66 Aligned_cols=62 Identities=10% Similarity=0.151 Sum_probs=42.8
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
-.+.+..|+.+|+++--+. -.|.|.+....+++ | .-||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~vP~lg~K~-------------D---avPG~~n~~~~~~~-~~G~y~g~CsE~C 200 (227)
T MTH00117 140 HRMVIPMESPIRILITAED--VLHSWAVPSLGVKT-------------D---AVPGRLNQTSFITT-RPGVFYGQCSEIC 200 (227)
T ss_pred ceEEEecCceEEEEEEecc--hhhcccccccCcee-------------E---ecCCceEEEEEEEc-ccceEEEEecccc
Confidence 3688899999988876654 33455555433333 2 23888888888888 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (227)
T MTH00117 201 G 201 (227)
T ss_pred c
Confidence 3
No 134
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=29.80 E-value=2.1e+02 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCeEEEecCCE-EEEEEEeCCCCceeEeee
Q 008351 55 GPTIRVHEGDT-LVVHVFNESPYNITIHWH 83 (569)
Q Consensus 55 gP~i~~~~Gd~-v~i~l~N~l~~~~~iH~H 83 (569)
-|.|....|.+ -..+|.|+-..+..||.|
T Consensus 46 ~~~l~~sd~~~~~~s~l~N~~q~pv~v~Yr 75 (123)
T COG5633 46 KPVLSESDGQPSASSVLKNKRQEPVTVHYR 75 (123)
T ss_pred CCeeeeeccccceeEEEeccccCceEEEEE
Confidence 46677777776 788999998889888887
No 135
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.51 E-value=2.2e+02 Score=25.45 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=42.0
Q ss_pred ccceEEEEEEEEEEEeccCceeeEEEEEcCC-CCCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCC
Q 008351 22 SAAIVEHSFHVKNLTIGRLCRQRVITAVNGR-LPGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNM 98 (569)
Q Consensus 22 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~-~PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~ 98 (569)
......|-++.++...... .....+-+-|. .+|-..|-..+-.|+.+++- ......++..|+ .+.-|.+|..-
T Consensus 30 l~~n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r~~~~~~v~F~vtD-~~~~v~V~Y~Gi--lPDlFrEGqgV 103 (155)
T PRK13159 30 LQRNMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQRAADSLKVSFTVID-KNAATQVEYTGI--LPDLFRDNQSV 103 (155)
T ss_pred hhhCceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEEcCCCcEEEEEEEc-CCcEEEEEEccC--CCccccCCCeE
Confidence 3444567777666544322 22345556666 47777663333367777763 356778888886 44445666643
No 136
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=28.56 E-value=1.3e+02 Score=27.04 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=28.6
Q ss_pred EEEEEcCCC-CCCeEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCC
Q 008351 45 VITAVNGRL-PGPTIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPN 97 (569)
Q Consensus 45 ~~~~~NG~~-PgP~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~ 97 (569)
..+-+.|.+ +|-..+-..|..|+.+++.. .....+...|+ .+..|.+|..
T Consensus 58 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~Gi--lPDlFrEG~g 108 (159)
T PRK13150 58 QRLRVGGMVMPGSVRRDPDSLKVNFSLYDA-EGSVTVSYEGI--LPDLFREGQG 108 (159)
T ss_pred CEEEEeeEEeCCcEEECCCCcEEEEEEEcC-CcEEEEEEecc--CCccccCCCe
Confidence 334445543 56666544556777777765 34566777776 3444456654
No 137
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=28.30 E-value=3.2e+02 Score=23.87 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=47.0
Q ss_pred EEEEEEEecCCCCeEEEEEeCceeEEEEecCCCC-CceEeeEEEEcCCcEEEEEEEeCC---CCceeEEEeeecc
Q 008351 220 TYLLRIINAALNNQLFFKIANHKFTVVSVDASYT-DPYVTDVVVIAPGQTTDVLLKADQ---PVGSYYMAARAYA 290 (569)
Q Consensus 220 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pgeR~dv~v~~~~---~~G~y~l~~~~~~ 290 (569)
.+..+|.|..+.-.-.+.+ ..+|...++..+ .-.....+.++|-..+++-+..+. .||+|.++.....
T Consensus 45 ~i~~~l~N~~~~~l~~~~v---~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 45 VIQANLQNPQPAILKKLTV---DAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred EEEEEEECCCchhhcCcEE---EEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEEEEEEEEc
Confidence 4567888887655334444 345666665433 445567789999999999999863 6899999877654
No 138
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.70 E-value=2.1e+02 Score=27.41 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=42.9
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+|+++-... -.|.|.+....+++ |. -||.--.+.+.++ .+|.|...|.-+.
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~k~-------------da---iPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VLHSWAVPSLGVKM-------------DA---VPGRLNQTTFFIS-RTGLFYGQCSEIC 200 (229)
T ss_pred ceEEEecCeEEEEEEEECC--ccccccccccCcee-------------ec---CCCceEEEEEEcC-CCEEEEEEccccc
Confidence 3688999998888776554 44555665443333 22 2787777778777 7899999998654
Q ss_pred cC
Q 008351 291 SA 292 (569)
Q Consensus 291 ~~ 292 (569)
..
T Consensus 201 G~ 202 (229)
T MTH00038 201 GA 202 (229)
T ss_pred Cc
Confidence 43
No 139
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=26.48 E-value=38 Score=32.11 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=24.6
Q ss_pred ChhhhHHHHHHHHHHHhhcccccceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCe
Q 008351 1 MERSMLLLAFASVLIVSSTLASAAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPT 57 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~ 57 (569)
|+||.++++++.+++.++..+.++. --|+|.|+. ||.
T Consensus 1 Mkk~~l~~~~L~~~~~~~~ts~a~~-------------------~~WgY~g~~-GPE 37 (250)
T COG3338 1 MKKRFLIVLALGASLIGAETSPAAE-------------------VHWGYTGKE-GPE 37 (250)
T ss_pred CceeeeHHHHHhhhhhhhhcccccc-------------------ccccccCCc-Cch
Confidence 8999888666666555555554444 237788887 774
No 140
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.30 E-value=1.6e+02 Score=28.10 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=42.5
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+||++-.... .|.|.+.....++ |. -||..-.+.+.++ .+|.|...|.-+.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg~k~-------------da---iPG~~n~~~~~~~-~~G~~~g~CsE~C 200 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSADV--LHSWTLPSLGLKM-------------DA---VPGRLNQLAFLSS-RPGSFYGQCSEIC 200 (225)
T ss_pred ceEEEecCCEEEEEEEeCCh--hhccccccccccc-------------cC---CCCeEEEEEEEcC-CCEEEEEEccccc
Confidence 46889999999988766643 3445554332222 22 2888888888887 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (225)
T MTH00168 201 G 201 (225)
T ss_pred C
Confidence 3
No 141
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=26.26 E-value=3.7e+02 Score=22.88 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=35.1
Q ss_pred CCeEEEecCCEEEEEEEeCC---CCceeEeeec----cccc-CCCCCCCCCCcccccCCCCCeeEEEEEe
Q 008351 55 GPTIRVHEGDTLVVHVFNES---PYNITIHWHG----IFQL-LSPWADGPNMITQCPITPGRSYTYKFNV 116 (569)
Q Consensus 55 gP~i~~~~Gd~v~i~l~N~l---~~~~~iH~HG----~~~~-~~~~~DG~~~~tq~~i~pG~~~~y~~~~ 116 (569)
+..=.+..|..+.+.+.=.. ........|| +..+ +....||=-. ..|||.+|+.++|.+..
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 45567778887776654222 2223334443 3322 1111355212 36999999999999987
No 142
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=26.17 E-value=1e+02 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=14.6
Q ss_pred cccccCCCCCeeEEEEEe
Q 008351 99 ITQCPITPGRSYTYKFNV 116 (569)
Q Consensus 99 ~tq~~i~pG~~~~y~~~~ 116 (569)
..+..+.||++.++.++.
T Consensus 85 ~~e~~l~PG~~~~~~~~~ 102 (146)
T TIGR03352 85 QDEIILLPGEKRKITITL 102 (146)
T ss_pred cceEEECCCCeeEeeeec
Confidence 345679999999999887
No 143
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=26.09 E-value=1.3e+02 Score=30.38 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=45.0
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++-..... |.|.|.....++ ..-||..-.+.+.++ .+|.|...|.-+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--HSF~IP~Lg~K~----------------damPG~~n~l~~~a~-~~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--NSFFIPRLGSQI----------------YAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--hhhhhhhhCCee----------------ecCCCceeEEEEEcC-CCEEEEEEChhhc
Confidence 458899999999999877643 344444333222 334888888888888 7999999998765
Q ss_pred cC
Q 008351 291 SA 292 (569)
Q Consensus 291 ~~ 292 (569)
..
T Consensus 212 G~ 213 (315)
T PRK10525 212 GP 213 (315)
T ss_pred Cc
Confidence 44
No 144
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.74 E-value=2.4e+02 Score=27.18 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=42.2
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.++.|+.+|+++-.+. -.|.|.+....+++ |.+ ||-.-.+.+.++ .+|.|..+|.-+.
T Consensus 143 n~l~lP~~~~v~~~itS~D--ViHSf~vP~lg~K~-------------Dav---PGr~n~~~~~~~-~~G~y~g~CsE~C 203 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD--VIHSWALPSLSIKM-------------DAM---SGILSTLCYSFP-MPGVFYGQCSEIC 203 (231)
T ss_pred CceEeecCcEEEEEEEeCc--ccccccccccCcee-------------ecc---CCceEEEEEEEc-CceEEEEEehhhc
Confidence 3578999999998886664 34455555333332 222 787777778877 7899999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 204 G 204 (231)
T MTH00080 204 G 204 (231)
T ss_pred C
Confidence 3
No 145
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.55 E-value=2.2e+02 Score=23.34 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred EEEEEcC-cEEEEEEEecCCCCeEEEEEeCceeE--------EEEecCCCCCceEeeEEEEcCCcEEEEEEEe
Q 008351 212 KLKVVEG-KTYLLRIINAALNNQLFFKIANHKFT--------VVSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275 (569)
Q Consensus 212 ~~~v~~G-~~~rlRliN~~~~~~~~~~i~gh~~~--------via~DG~~~~p~~~d~v~l~pgeR~dv~v~~ 275 (569)
.+.+.+| ++..+.+.|.| .+.+.+.-|-|-++ --++=|-.+.=.....+...|||..+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTG-DRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCC-CcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 3556655 66789999999 45454433333222 2222233332223467888999999887654
No 146
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=25.32 E-value=27 Score=28.57 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=8.6
Q ss_pred CCeE-EEecCCEEEEE
Q 008351 55 GPTI-RVHEGDTLVVH 69 (569)
Q Consensus 55 gP~i-~~~~Gd~v~i~ 69 (569)
||.| .+++|..|-.-
T Consensus 64 ~p~ifqvrpGsvVS~s 79 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFS 79 (118)
T ss_dssp EEGGGT--TT-EEEEE
T ss_pred CceEEEEcCCcEEEEe
Confidence 5877 89999886543
No 147
>COG3241 Azurin [Energy production and conversion]
Probab=25.02 E-value=95 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=28.5
Q ss_pred CCCCc----eEeeEEEEcCCcEEEEEEEeCC-CCc-eeEEEeee
Q 008351 251 SYTDP----YVTDVVVIAPGQTTDVLLKADQ-PVG-SYYMAARA 288 (569)
Q Consensus 251 ~~~~p----~~~d~v~l~pgeR~dv~v~~~~-~~G-~y~l~~~~ 288 (569)
.|++| +...+-.|+.|||-++-++... ..| .|.+.|.-
T Consensus 93 dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtF 136 (151)
T COG3241 93 DYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTF 136 (151)
T ss_pred ccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEec
Confidence 46643 4457889999999999998764 345 79999864
No 148
>PF15240 Pro-rich: Proline-rich
Probab=24.52 E-value=46 Score=30.38 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHhhc
Q 008351 5 MLLLAFASVLIVSST 19 (569)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (569)
|||++|.++||++|+
T Consensus 1 MLlVLLSvALLALSS 15 (179)
T PF15240_consen 1 MLLVLLSVALLALSS 15 (179)
T ss_pred ChhHHHHHHHHHhhh
Confidence 344333344444444
No 149
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=24.50 E-value=4.1e+02 Score=22.58 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=34.2
Q ss_pred CeEEEecCCEEEEEEEeCCC-----CceeEeee--cccccCCC-CCCCCCCc-ccccCCCCCeeEEEEEe
Q 008351 56 PTIRVHEGDTLVVHVFNESP-----YNITIHWH--GIFQLLSP-WADGPNMI-TQCPITPGRSYTYKFNV 116 (569)
Q Consensus 56 P~i~~~~Gd~v~i~l~N~l~-----~~~~iH~H--G~~~~~~~-~~DG~~~~-tq~~i~pG~~~~y~~~~ 116 (569)
..=.+..|+.+.+++.=... -.+.+|+. |+..+-.. ..|+=... ..|||.+|+.++|.+.+
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 44567778776666542221 12334443 44433111 12442121 46999999999999976
No 150
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.04 E-value=87 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=21.2
Q ss_pred eCCCcEEEEEEE-eCCc---eeEEEeecccc
Q 008351 511 VPVGGWAVIRFQ-ANNP---GVWFVHCHLDV 537 (569)
Q Consensus 511 vp~~g~~~irf~-adnp---G~w~~HCHil~ 537 (569)
||||..+.|.++ ..|| |.|.|+|=...
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 578999999996 3466 99999996544
No 151
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.00 E-value=2.8e+02 Score=26.61 Aligned_cols=75 Identities=16% Similarity=0.235 Sum_probs=51.8
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|+.+++.+...+ ..| .|+|-+-| ...|.+ ||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViH-------sf~ip~~~------------------~k~da~---PG~~~~~~~~~~ 187 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VLH-------SWAVPALG------------------VKMDAV---PGRLNQTAFIAS 187 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----ccc-------ceeccccC------------------CccccC---CCceEEEEEEeC
Confidence 4578899999999998543 444 45554432 123443 677788889999
Q ss_pred CceeEEEeecccccc-ccccEEEEEEec
Q 008351 525 NPGVWFVHCHLDVHL-PWGLATAFVVEN 551 (569)
Q Consensus 525 npG~w~~HCHil~H~-d~GM~~~~~V~~ 551 (569)
.||.+...|.-+--. +..|-..++|.+
T Consensus 188 ~~G~~~g~C~e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 188 RPGVFYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred CceEEEEEChhhccccccCCcEEEEEEC
Confidence 999999999886544 355656666654
No 152
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.65 E-value=72 Score=27.51 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=10.2
Q ss_pred CCCCeeEEEEEeCCCCcce
Q 008351 105 TPGRSYTYKFNVINQEGTL 123 (569)
Q Consensus 105 ~pG~~~~y~~~~~~~~Gt~ 123 (569)
.-|......|.. -.+|+|
T Consensus 72 it~dpv~~~f~~-Lk~G~Y 89 (151)
T COG4704 72 ITGDPVSKSFYG-LKPGKY 89 (151)
T ss_pred ccCCchhheeec-CCCccE
Confidence 345555556655 566665
No 153
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.64 E-value=2e+02 Score=27.51 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=42.4
Q ss_pred eEEEEEcCcEEEEEEEecCCCCeEEEEEeCceeEEEEecCCCCCceEeeEEEEcCCcEEEEEEEeCCCCceeEEEeeecc
Q 008351 211 YKLKVVEGKTYLLRIINAALNNQLFFKIANHKFTVVSVDASYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 290 (569)
Q Consensus 211 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~G~y~l~~~~~~ 290 (569)
..+.+..|+.+||++-.+. -.|.|.+....+++ |.+ ||..-.+.++++ .+|.|...|.-+.
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~l~~K~-------------Dai---PG~~n~~~~~~~-~~G~y~g~CsE~C 200 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD--VLHSWTVPSLGVKI-------------DAV---PGRLNQVGFFIN-RPGVFYGQCSEIC 200 (226)
T ss_pred ceEEEecCCEEEEEEecCc--cccceeccccCccc-------------cCC---CCcEEEEEEEcC-CCEEEEEEChhhc
Confidence 4688999999988776553 44555555433332 222 787777888887 7999999998654
Q ss_pred c
Q 008351 291 S 291 (569)
Q Consensus 291 ~ 291 (569)
.
T Consensus 201 G 201 (226)
T MTH00139 201 G 201 (226)
T ss_pred C
Confidence 3
No 154
>PF02927 CelD_N: N-terminal ig-like domain of cellulase; InterPro: IPR004197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Cellulases (Endoglucanases) 3.2.1.4 from EC catalyse the endohydrolysis of 1,4-beta-D-glucosidic linkages in cellulose. This is the N-terminal ig-like domain of cellulase, enzymes containing this domain belong to family 9 of the glycoside hydrolases (GH9 from CAZY).; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1CLC_A 1WMX_B 2C24_B 1RQ5_A 3K4Z_A 3H7L_B 3RX5_A 3RX8_A 3H2W_A 3RX7_A ....
Probab=23.18 E-value=2.5e+02 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=13.2
Q ss_pred cEEEEEEEeCC--CCceeEEEee
Q 008351 267 QTTDVLLKADQ--PVGSYYMAAR 287 (569)
Q Consensus 267 eR~dv~v~~~~--~~G~y~l~~~ 287 (569)
...-..++|+. .||.|.|++.
T Consensus 63 ~~~~~~~DFS~~~~~G~Y~i~~~ 85 (91)
T PF02927_consen 63 GEYVYRIDFSDLTTPGTYYIRVG 85 (91)
T ss_dssp TEEEEEEE-TT--S-EEEEEEET
T ss_pred CCeEEEEEcCCcCCCEEEEEEEC
Confidence 34445677774 7899999874
No 155
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=22.94 E-value=4.6e+02 Score=22.61 Aligned_cols=44 Identities=16% Similarity=0.066 Sum_probs=28.7
Q ss_pred CCceEEEcCcCCCCCCCCCCCCcceEEEEEcCc----EEEEEEEecCCCCeEEEEEe
Q 008351 187 ISDAYTINGKPGDLYPCSQNPNQIYKLKVVEGK----TYLLRIINAALNNQLFFKIA 239 (569)
Q Consensus 187 ~~~~~liNG~~~~~~~~~~~~~~~~~~~v~~G~----~~rlRliN~~~~~~~~~~i~ 239 (569)
.++.+.++|.++. -...-..++|+ .+|+++.|.-....+...+.
T Consensus 13 kG~~i~~~g~p~~---------V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~ 60 (129)
T PRK03999 13 EGSYVVIDGEPCK---------IVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQP 60 (129)
T ss_pred CCCEEEECCEEEE---------EEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEec
Confidence 3568888998541 11223466787 78999999877665555543
No 156
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.85 E-value=3.9e+02 Score=25.58 Aligned_cols=75 Identities=12% Similarity=0.237 Sum_probs=52.6
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|..+++.+.+.+ ..|.|.+-+... ..|. -||....+.|.++
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~-------------------------k~da---iPG~~~~~~~~~~ 187 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGV-------------------------KVDA---VPGRLNQIGFTIT 187 (228)
T ss_pred ceEEEecCCEEEEEEEeCC----ccccccccccCc-------------------------ceec---CCCceEEEEEEeC
Confidence 5678899999999998754 566655443211 1233 3677778889999
Q ss_pred CceeEEEeeccccccc-cccEEEEEEec
Q 008351 525 NPGVWFVHCHLDVHLP-WGLATAFVVEN 551 (569)
Q Consensus 525 npG~w~~HCHil~H~d-~GM~~~~~V~~ 551 (569)
.||.+.--|.-+-... .-|-..++|.+
T Consensus 188 ~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 188 RPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 9999999998877663 45556666554
No 157
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=22.00 E-value=2.6e+02 Score=26.59 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=8.5
Q ss_pred eeEEEEcCCcEEEE
Q 008351 258 TDVVVIAPGQTTDV 271 (569)
Q Consensus 258 ~d~v~l~pgeR~dv 271 (569)
...|.|.|||++.+
T Consensus 153 G~~l~L~PGESiTL 166 (225)
T PF07385_consen 153 GTQLRLNPGESITL 166 (225)
T ss_dssp T-EEEE-TT-EEEE
T ss_pred CceEEeCCCCeEee
Confidence 46788999998765
No 158
>PRK01904 hypothetical protein; Provisional
Probab=21.25 E-value=1.8e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCC-------CeEEEecC--CEEEEEEE
Q 008351 44 RVITAVNGRLPG-------PTIRVHEG--DTLVVHVF 71 (569)
Q Consensus 44 ~~~~~~NG~~Pg-------P~i~~~~G--d~v~i~l~ 71 (569)
..++++||+-+. -.|++..| ..|.+|+.
T Consensus 30 i~lL~vnG~kv~~s~~~~~~~l~L~dgg~hQIv~ry~ 66 (219)
T PRK01904 30 IDFLAIDGQKASKSLLKEAKSFNINDTQVHQVVVRVS 66 (219)
T ss_pred eEEEEECCEECccccccCCcceEeCCCCceEEEEEEe
Confidence 556777777542 24667664 45555544
No 159
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=21.05 E-value=1.6e+02 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=16.5
Q ss_pred CCCCCee----EEEEEeCCCCcceeEec
Q 008351 104 ITPGRSY----TYKFNVINQEGTLWWHG 127 (569)
Q Consensus 104 i~pG~~~----~y~~~~~~~~Gt~wYH~ 127 (569)
+..|.+. .|+|.. ...+.+|-|-
T Consensus 86 l~~GD~V~f~GeYe~n~-kggvIHWTH~ 112 (131)
T PF11948_consen 86 LQKGDQVEFYGEYEWNP-KGGVIHWTHH 112 (131)
T ss_pred cCCCCEEEEEEEEEECC-CCCEEEeecc
Confidence 6677765 578875 6677888873
No 160
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=20.76 E-value=1.2e+02 Score=30.44 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=30.4
Q ss_pred ChhhhHHHHHHHHHHHhhcccc--cceEEEEEEEEEEEeccCceeeEEEEEcCCCCCCeEEEecCCEEE
Q 008351 1 MERSMLLLAFASVLIVSSTLAS--AAIVEHSFHVKNLTIGRLCRQRVITAVNGRLPGPTIRVHEGDTLV 67 (569)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~ 67 (569)
|-|+++++++++++++++..|. ++-..++=.|.....+++. ...+.+.-|.. =.|.+.+|++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~a~A~~~p~~~~~D~RIr~v~Y~p~~-V~~V~~~~G~~--T~I~f~~gE~I~ 66 (292)
T PRK13861 1 MIKKLFLTLACLLFAAIGALAEDTPAAGKLDPRMRYLAYNPDQ-VVRLSTAVGAT--LVVTFGANETVT 66 (292)
T ss_pred ChhHHHHHHHHHHHhccchhHhhcCCCCCCCCceEEEEeCCCC-EEEEEEECCcE--EEEEECCCCEEE
Confidence 5566655444443332222221 2223345555555555433 23333333332 578888888873
No 161
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.45 E-value=2.9e+02 Score=22.73 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEEcC-cEEEEEEEecCCCCeEEEEEeCceeEE--------EEecCCCCCceEeeEEEEcCCcEEEEEEEe
Q 008351 213 LKVVEG-KTYLLRIINAALNNQLFFKIANHKFTV--------VSVDASYTDPYVTDVVVIAPGQTTDVLLKA 275 (569)
Q Consensus 213 ~~v~~G-~~~rlRliN~~~~~~~~~~i~gh~~~v--------ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~ 275 (569)
+.+.+| +++.+++.|.| .+.+.+.-|-|-+++ -++=|..+.=.....+...|||..+|.+..
T Consensus 13 I~ln~gr~~~~l~V~NtG-DRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (102)
T PRK13203 13 IELNAGRETVTLTVANTG-DRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVP 83 (102)
T ss_pred EEeCCCCCEEEEEEEeCC-CCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 555555 66789999999 454544333332222 222232232223467888899888887654
No 162
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=20.32 E-value=2e+02 Score=30.32 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=45.3
Q ss_pred eEEEecCCEEEEEEEeCCCCceeEeeecccccCCCCCCCCCCcccccCCCCCeeEEEEEeCCCCcceeEecc
Q 008351 57 TIRVHEGDTLVVHVFNESPYNITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTYKFNVINQEGTLWWHGH 128 (569)
Q Consensus 57 ~i~~~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y~~~~~~~~Gt~wYH~H 128 (569)
+..++.++.+++.|+|. ..+++-.||+.... |+.-+ -+.|......+|.+ ++.|.+||.+-
T Consensus 549 ~staps~~l~ef~Vkq~--DEVt~l~tnld~Ve----d~thg----fv~p~~~v~~~v~p-q~tasvtf~a~ 609 (637)
T COG4263 549 TSTAPSFGLTEFKVKQG--DEVTVLTTNLDEVE----DLTHG----FVIPNYGVNMEVKP-QRTASVTFYAD 609 (637)
T ss_pred eeccCCCceEEEEEecC--cEEEEEecccceec----cccce----eeeccCceEEEEcc-CCceEEEEEcc
Confidence 45677889999999986 44556667876542 55443 47788888888987 99999999874
No 163
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.30 E-value=4.9e+02 Score=25.16 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=53.0
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCeeeecCcEEEEEeCcCcCCcccccccccCCCCCccceEEeCCCcEEEEEEEeC
Q 008351 445 SVKTLKFNSTVEIVLQNTALIAVENHPIHIHGFDFHVLAQGFGNYNAARDIKKFNLVNPQRRNTIAVPVGGWAVIRFQAN 524 (569)
Q Consensus 445 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 524 (569)
..+.++.|..+++.+... +..|.|.+-.-.. .+|.+ ||-...+.|.++
T Consensus 151 n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-------------------------K~Dai---PG~~n~~~~~~~ 198 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-------------------------KIDAV---PGRLNQTGFFIK 198 (240)
T ss_pred ceEEEecCCEEEEEEEcC----CcccceeecccCc-------------------------eeecC---CCcceeEEEEcC
Confidence 557899999999999854 3677766553211 23443 566667889999
Q ss_pred CceeEEEeeccccccc-cccEEEEEEec
Q 008351 525 NPGVWFVHCHLDVHLP-WGLATAFVVEN 551 (569)
Q Consensus 525 npG~w~~HCHil~H~d-~GM~~~~~V~~ 551 (569)
.||.+.-.|.-+--.. .-|-..++|.+
T Consensus 199 ~~G~y~g~C~e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 199 RPGVFYGQCSEICGANHSFMPIVIEAVS 226 (240)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999998887664 45556666554
No 164
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.22 E-value=2.7e+02 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=23.8
Q ss_pred EcCCcEEEEEEEeCCC---CceeEEEeeecccCC
Q 008351 263 IAPGQTTDVLLKADQP---VGSYYMAARAYASAP 293 (569)
Q Consensus 263 l~pgeR~dv~v~~~~~---~G~y~l~~~~~~~~~ 293 (569)
|.||+.+.|.++.-.+ .|.|.+.+.....+.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~ 132 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGD 132 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCC
Confidence 4799999999954333 488999999876665
No 165
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=20.20 E-value=4.5e+02 Score=22.58 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHH
Q 008351 1 MERSMLLLAFASV 13 (569)
Q Consensus 1 m~~~~~~~~~~~~ 13 (569)
|++..++++++++
T Consensus 1 MK~~~~~~s~~l~ 13 (124)
T PF14263_consen 1 MKKSYMLASVALA 13 (124)
T ss_dssp -------------
T ss_pred CchhHHHHHHHHH
Confidence 6776555543333
No 166
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=20.19 E-value=4.7e+02 Score=24.92 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=59.2
Q ss_pred ccCceeeEEEEEcCCCCCCeEEEecCCEEEEEEEeCCCC-----ceeEeeecccccCCCCCCCCCCcccccCCCCCeeEE
Q 008351 38 GRLCRQRVITAVNGRLPGPTIRVHEGDTLVVHVFNESPY-----NITIHWHGIFQLLSPWADGPNMITQCPITPGRSYTY 112 (569)
Q Consensus 38 ~~~g~~~~~~~~NG~~PgP~i~~~~Gd~v~i~l~N~l~~-----~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pG~~~~y 112 (569)
+++|..--.+++.|.+-.-.|.|..|..+|+++.=..+- ..+-.+|+.. .++-+|....
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ssI 142 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSSI 142 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeEE
Confidence 333333333455555544689999999999999887543 2334444431 2455888888
Q ss_pred EEEeCCCCcceeEecchhhhhccceeeEEEeCCCCC
Q 008351 113 KFNVINQEGTLWWHGHVSLLRATVYGALIIRPKSGH 148 (569)
Q Consensus 113 ~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~ 148 (569)
+|+. .+.|.|=+-|-... |.|.++|++....
T Consensus 143 e~T~-~s~ge~af~cgmnm----~~G~~~vet~~~~ 173 (272)
T COG4633 143 EFTP-ISKGEYAFLCGMNM----FRGNIQVETLTGK 173 (272)
T ss_pred Eecc-ccccchhhhcchhh----ccCeeEEEecCCc
Confidence 9986 89999877776544 4499999976543
Done!