Query 008352
Match_columns 569
No_of_seqs 411 out of 2351
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 00:11:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 9E-55 3.1E-59 468.4 35.7 315 252-566 91-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 6.7E-55 2.3E-59 469.1 26.8 311 253-566 77-423 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 5.2E-42 1.8E-46 384.4 0.8 251 316-566 358-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 2.9E-36 9.8E-41 302.6 15.4 209 253-461 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 6.3E-32 2.1E-36 263.0 20.5 222 327-558 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 1.3E-31 4.4E-36 260.6 6.0 216 326-553 26-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 9.4E-23 3.2E-27 192.9 14.9 180 316-558 10-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 2.7E-23 9.1E-28 195.4 10.3 171 314-556 11-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 2.9E-21 9.9E-26 176.7 14.2 155 352-560 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 1.8E-19 6.3E-24 167.3 -2.9 143 330-560 3-145 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 2.7E-16 9.4E-21 163.8 9.2 85 317-401 250-338 (339)
12 3n0r_A Response regulator; sig 99.6 2.2E-15 7.5E-20 153.4 7.1 142 326-557 19-160 (286)
13 3t72_q RNA polymerase sigma fa 99.5 2.8E-14 9.7E-19 124.1 10.4 80 488-567 3-82 (99)
14 1tty_A Sigma-A, RNA polymerase 99.3 1.8E-12 6E-17 109.4 7.3 72 496-567 10-81 (87)
15 1ku3_A Sigma factor SIGA; heli 99.3 9.6E-13 3.3E-17 107.1 3.7 68 498-565 4-72 (73)
16 3hug_A RNA polymerase sigma fa 99.3 1.3E-11 4.4E-16 104.8 10.7 75 482-560 15-89 (92)
17 2p7v_B Sigma-70, RNA polymeras 99.3 2.1E-12 7E-17 103.7 3.9 66 501-566 2-67 (68)
18 2o8x_A Probable RNA polymerase 99.0 6.4E-10 2.2E-14 88.5 7.1 64 494-561 5-68 (70)
19 2o7g_A Probable RNA polymerase 99.0 1.5E-09 5.1E-14 94.4 8.5 82 318-402 13-95 (112)
20 1h3l_A RNA polymerase sigma fa 98.9 2.7E-09 9.4E-14 88.5 6.3 75 325-401 9-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 1.2E-08 4.1E-13 90.3 10.2 69 489-561 9-78 (113)
22 3clo_A Transcriptional regulat 98.7 1E-11 3.5E-16 124.2 -15.2 153 318-555 86-243 (258)
23 1s7o_A Hypothetical UPF0122 pr 98.7 2.5E-08 8.7E-13 88.4 7.3 63 495-561 12-75 (113)
24 2rnj_A Response regulator prot 98.5 3.6E-08 1.2E-12 83.3 3.1 59 492-555 17-75 (91)
25 1x3u_A Transcriptional regulat 98.5 1.8E-07 6E-12 76.2 6.4 54 496-554 8-61 (79)
26 3c57_A Two component transcrip 98.5 1.9E-07 6.4E-12 79.8 6.4 58 494-556 17-74 (95)
27 1jhg_A Trp operon repressor; c 98.5 1.2E-07 4.1E-12 82.5 5.0 64 493-557 23-90 (101)
28 1je8_A Nitrate/nitrite respons 98.4 3E-07 1E-11 76.4 4.6 55 497-556 14-68 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.4E-06 4.7E-11 69.7 5.1 53 498-555 5-57 (74)
30 3ulq_B Transcriptional regulat 98.0 1E-05 3.4E-10 68.6 6.3 49 500-553 25-73 (90)
31 2jpc_A SSRB; DNA binding prote 97.9 7.9E-06 2.7E-10 63.1 4.3 43 507-554 1-43 (61)
32 1p4w_A RCSB; solution structur 97.9 1.9E-05 6.3E-10 68.3 6.1 47 503-554 33-79 (99)
33 2q0o_A Probable transcriptiona 97.5 0.00016 5.6E-09 70.7 7.0 46 504-554 175-220 (236)
34 1l3l_A Transcriptional activat 97.4 0.00017 5.7E-09 70.5 6.8 46 504-554 173-218 (234)
35 3szt_A QCSR, quorum-sensing co 97.3 0.00028 9.7E-09 69.3 6.3 46 503-553 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.2 0.00041 1.4E-08 69.5 6.3 46 504-554 197-242 (265)
37 1tc3_C Protein (TC3 transposas 96.9 0.0013 4.4E-08 47.3 5.2 40 504-547 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.5 0.005 1.7E-07 53.4 7.0 46 504-553 18-63 (101)
39 1yio_A Response regulatory pro 96.5 0.0059 2E-07 56.9 7.8 51 498-553 136-186 (208)
40 2x48_A CAG38821; archeal virus 96.3 0.0024 8.3E-08 48.0 3.2 39 505-548 17-55 (55)
41 1a04_A Nitrate/nitrite respons 96.2 0.0084 2.9E-07 56.3 7.0 46 503-553 153-198 (215)
42 3c3w_A Two component transcrip 95.9 0.011 3.8E-07 56.4 6.4 46 503-553 148-193 (225)
43 3klo_A Transcriptional regulat 95.2 0.018 6.2E-07 54.7 5.0 47 502-553 157-203 (225)
44 3p7n_A Sensor histidine kinase 94.9 0.066 2.2E-06 51.3 8.3 55 494-553 188-242 (258)
45 3iyd_F RNA polymerase sigma fa 94.3 0.011 3.8E-07 66.1 1.3 34 253-286 94-127 (613)
46 1qgp_A Protein (double strande 93.4 0.087 3E-06 43.0 4.8 40 507-546 14-53 (77)
47 1jko_C HIN recombinase, DNA-in 93.2 0.043 1.5E-06 39.6 2.4 33 510-547 12-44 (52)
48 2oqr_A Sensory transduction pr 93.0 0.1 3.4E-06 49.2 5.3 50 504-554 156-210 (230)
49 1p2f_A Response regulator; DRR 93.0 0.081 2.8E-06 49.6 4.6 50 504-554 145-197 (220)
50 1qbj_A Protein (double-strande 92.8 0.15 5.3E-06 42.1 5.5 44 507-554 10-53 (81)
51 2gwr_A DNA-binding response re 92.7 0.11 3.8E-06 49.5 5.2 50 504-554 153-207 (238)
52 1kgs_A DRRD, DNA binding respo 92.0 0.12 4E-06 48.5 4.2 50 504-554 151-205 (225)
53 3ugo_A RNA polymerase sigma fa 91.7 0.032 1.1E-06 55.3 0.0 51 498-553 192-244 (245)
54 1ys7_A Transcriptional regulat 91.5 0.11 3.9E-06 48.9 3.7 50 504-554 159-213 (233)
55 3kor_A Possible Trp repressor; 91.2 0.19 6.5E-06 44.7 4.4 35 503-543 60-94 (119)
56 1u78_A TC3 transposase, transp 91.0 0.26 9E-06 43.1 5.2 40 504-547 6-45 (141)
57 3r0j_A Possible two component 90.8 0.35 1.2E-05 46.5 6.4 50 504-554 176-230 (250)
58 1zx4_A P1 PARB, plasmid partit 90.7 0.22 7.5E-06 47.8 4.8 36 509-549 14-49 (192)
59 3q9s_A DNA-binding response re 90.7 0.2 6.9E-06 48.6 4.6 50 504-554 182-236 (249)
60 1pdn_C Protein (PRD paired); p 90.4 0.42 1.4E-05 40.6 5.9 42 504-549 17-58 (128)
61 2hqr_A Putative transcriptiona 89.9 0.099 3.4E-06 49.1 1.6 50 504-554 143-197 (223)
62 1k78_A Paired box protein PAX5 88.6 0.65 2.2E-05 41.4 5.9 42 504-549 32-73 (149)
63 2d1h_A ST1889, 109AA long hypo 88.5 0.9 3.1E-05 37.4 6.4 43 502-546 16-58 (109)
64 2heo_A Z-DNA binding protein 1 88.5 0.48 1.7E-05 37.3 4.4 44 505-554 8-51 (67)
65 1oyi_A Double-stranded RNA-bin 88.4 0.35 1.2E-05 40.2 3.7 24 524-547 30-53 (82)
66 3k2z_A LEXA repressor; winged 88.2 0.5 1.7E-05 44.6 5.1 42 504-545 2-45 (196)
67 2w48_A Sorbitol operon regulat 87.4 0.56 1.9E-05 47.6 5.3 36 511-550 12-47 (315)
68 3r0a_A Putative transcriptiona 87.3 1.1 3.9E-05 39.1 6.6 49 500-554 19-68 (123)
69 2elh_A CG11849-PA, LD40883P; s 86.9 1 3.6E-05 36.9 5.7 27 523-549 37-63 (87)
70 2o3f_A Putative HTH-type trans 86.8 1.6 5.6E-05 37.7 7.2 50 496-547 10-62 (111)
71 1y0u_A Arsenical resistance op 86.8 3 0.0001 34.3 8.6 36 506-546 30-65 (96)
72 2dbb_A Putative HTH-type trans 86.2 1.3 4.5E-05 39.6 6.6 42 503-547 5-46 (151)
73 3nqo_A MARR-family transcripti 86.2 1.7 5.7E-05 40.4 7.5 53 494-547 28-80 (189)
74 2cfx_A HTH-type transcriptiona 85.8 1.3 4.4E-05 39.5 6.2 41 504-547 2-42 (144)
75 1sfu_A 34L protein; protein/Z- 85.0 1.3 4.6E-05 36.1 5.3 33 518-554 23-55 (75)
76 2cyy_A Putative HTH-type trans 85.0 1.7 6E-05 38.9 6.7 41 504-547 4-44 (151)
77 3tgn_A ADC operon repressor AD 84.7 1.6 5.5E-05 38.0 6.2 40 504-547 35-74 (146)
78 2cg4_A Regulatory protein ASNC 84.6 1.8 6.2E-05 38.8 6.7 41 504-547 5-45 (152)
79 1r1u_A CZRA, repressor protein 84.5 2.9 0.0001 35.1 7.6 46 497-546 15-61 (106)
80 1i1g_A Transcriptional regulat 84.4 1.5 5.3E-05 38.4 6.0 40 505-547 2-41 (141)
81 2x4h_A Hypothetical protein SS 84.3 1.4 4.9E-05 38.4 5.7 46 503-548 9-55 (139)
82 2glo_A Brinker CG9653-PA; prot 84.0 1.8 6.2E-05 32.7 5.5 32 524-556 21-56 (59)
83 3bro_A Transcriptional regulat 84.0 4 0.00014 35.0 8.5 52 495-547 20-73 (141)
84 2p5v_A Transcriptional regulat 83.9 1.7 5.8E-05 39.5 6.2 41 504-547 7-47 (162)
85 3i4p_A Transcriptional regulat 83.5 1.7 5.9E-05 39.6 6.1 40 505-547 1-40 (162)
86 2w25_A Probable transcriptiona 83.5 1.9 6.3E-05 38.6 6.2 41 504-547 4-44 (150)
87 2gxg_A 146AA long hypothetical 83.4 3.3 0.00011 35.8 7.7 48 497-548 25-74 (146)
88 2pn6_A ST1022, 150AA long hypo 83.2 1.8 6.3E-05 38.5 6.0 40 505-547 1-40 (150)
89 3eco_A MEPR; mutlidrug efflux 82.9 3.9 0.00013 35.2 7.9 54 494-548 16-71 (139)
90 3ech_A MEXR, multidrug resista 82.9 2.7 9.1E-05 36.6 6.9 52 494-548 20-75 (142)
91 3sqn_A Conserved domain protei 82.5 1.5 5.2E-05 47.4 6.1 107 431-554 32-138 (485)
92 1q1h_A TFE, transcription fact 82.5 1.2 4E-05 37.8 4.2 45 504-554 15-59 (110)
93 2jn6_A Protein CGL2762, transp 82.5 2.2 7.4E-05 35.3 5.8 41 505-548 6-47 (97)
94 1sfx_A Conserved hypothetical 82.4 1.8 6.2E-05 35.4 5.3 41 504-547 17-57 (109)
95 2k27_A Paired box protein PAX- 82.3 0.73 2.5E-05 41.7 3.0 40 504-547 25-64 (159)
96 3frw_A Putative Trp repressor 82.1 2 7E-05 37.4 5.5 40 504-543 36-77 (107)
97 3jth_A Transcription activator 82.1 4 0.00014 33.5 7.3 50 497-554 12-62 (98)
98 3pqk_A Biofilm growth-associat 82.0 3.7 0.00013 34.0 7.2 45 497-545 12-57 (102)
99 3cuo_A Uncharacterized HTH-typ 81.9 2 6.7E-05 35.0 5.3 46 498-546 14-60 (99)
100 2e1c_A Putative HTH-type trans 81.4 2.3 8E-05 39.3 6.2 41 504-547 24-64 (171)
101 3iwf_A Transcription regulator 81.4 4.1 0.00014 35.1 7.3 61 495-557 5-72 (107)
102 2l0k_A Stage III sporulation p 81.4 1.4 4.9E-05 37.3 4.2 38 507-548 7-44 (93)
103 3bpv_A Transcriptional regulat 81.3 4.4 0.00015 34.6 7.6 50 495-547 15-66 (138)
104 2zkz_A Transcriptional repress 80.7 2.5 8.5E-05 35.3 5.6 38 506-547 26-64 (99)
105 2oqg_A Possible transcriptiona 80.6 3.3 0.00011 34.7 6.4 46 498-547 11-57 (114)
106 2lkp_A Transcriptional regulat 80.4 3.9 0.00013 34.8 6.9 46 498-547 22-68 (119)
107 2ia0_A Putative HTH-type trans 80.4 2.5 8.6E-05 39.1 6.0 42 503-547 13-54 (171)
108 2qvo_A Uncharacterized protein 80.3 1.7 5.9E-05 35.8 4.4 45 504-548 9-54 (95)
109 2fa5_A Transcriptional regulat 80.3 6.2 0.00021 34.8 8.5 52 496-550 35-89 (162)
110 3bdd_A Regulatory protein MARR 80.3 4.8 0.00016 34.5 7.5 42 504-548 28-69 (142)
111 1ku9_A Hypothetical protein MJ 80.0 4.8 0.00016 34.7 7.5 42 504-547 23-64 (152)
112 1u78_A TC3 transposase, transp 80.0 9.2 0.00031 32.9 9.3 78 432-548 23-103 (141)
113 2nnn_A Probable transcriptiona 79.7 3.6 0.00012 35.2 6.5 49 496-547 26-75 (140)
114 1uly_A Hypothetical protein PH 79.7 3.1 0.0001 39.4 6.5 39 505-547 18-56 (192)
115 3qq6_A HTH-type transcriptiona 79.3 2.1 7.2E-05 34.0 4.5 25 523-547 22-46 (78)
116 1jhf_A LEXA repressor; LEXA SO 79.1 1.2 3.9E-05 42.0 3.3 44 504-547 3-49 (202)
117 2fbh_A Transcriptional regulat 79.1 4.8 0.00016 34.7 7.2 51 495-547 23-75 (146)
118 1r1t_A Transcriptional repress 78.9 5 0.00017 34.9 7.2 45 499-547 37-82 (122)
119 3cdh_A Transcriptional regulat 78.4 6.9 0.00023 34.3 8.1 51 495-548 29-81 (155)
120 3fm5_A Transcriptional regulat 78.3 5.9 0.0002 34.6 7.6 52 494-547 24-77 (150)
121 1zug_A Phage 434 CRO protein; 78.2 2.4 8.3E-05 32.1 4.4 25 523-547 15-39 (71)
122 3mn2_A Probable ARAC family tr 78.1 20 0.00069 29.7 10.6 36 419-454 6-41 (108)
123 2kko_A Possible transcriptiona 78.1 3.4 0.00012 35.0 5.7 45 498-546 15-60 (108)
124 4hbl_A Transcriptional regulat 78.1 6.8 0.00023 34.3 7.9 50 497-549 29-80 (149)
125 1uxc_A FRUR (1-57), fructose r 78.0 1.8 6.1E-05 34.0 3.6 23 525-547 1-23 (65)
126 2rdp_A Putative transcriptiona 77.9 6.2 0.00021 34.3 7.6 52 495-549 28-81 (150)
127 2htj_A P fimbrial regulatory p 77.9 4.8 0.00016 32.1 6.3 24 523-546 13-36 (81)
128 1r69_A Repressor protein CI; g 77.7 2.6 8.9E-05 31.7 4.4 25 523-547 13-37 (69)
129 1jgs_A Multiple antibiotic res 77.6 7.4 0.00025 33.2 7.9 53 494-549 19-73 (138)
130 2qww_A Transcriptional regulat 77.6 6.1 0.00021 34.6 7.5 42 504-548 38-79 (154)
131 3o9x_A Uncharacterized HTH-typ 77.5 6.4 0.00022 34.2 7.5 39 503-547 69-107 (133)
132 2xi8_A Putative transcription 77.5 2.4 8.1E-05 31.6 4.1 25 523-547 13-37 (66)
133 2a6c_A Helix-turn-helix motif; 77.4 2.6 8.9E-05 33.7 4.5 25 523-547 30-54 (83)
134 3hsr_A HTH-type transcriptiona 77.2 4.9 0.00017 34.8 6.7 52 494-548 21-74 (140)
135 1y7y_A C.AHDI; helix-turn-heli 77.0 2.8 9.6E-05 32.0 4.5 25 523-547 25-49 (74)
136 3kp7_A Transcriptional regulat 76.8 4.9 0.00017 35.2 6.6 49 496-548 25-75 (151)
137 3cjn_A Transcriptional regulat 76.8 4.4 0.00015 35.9 6.3 42 504-548 49-90 (162)
138 3b7h_A Prophage LP1 protein 11 76.6 3.3 0.00011 32.1 4.8 25 523-547 19-43 (78)
139 2b5a_A C.BCLI; helix-turn-heli 76.6 2.9 9.9E-05 32.3 4.5 25 523-547 22-46 (77)
140 3f6w_A XRE-family like protein 76.4 2.1 7.3E-05 33.8 3.7 25 523-547 26-50 (83)
141 3f3x_A Transcriptional regulat 76.3 6.8 0.00023 33.9 7.3 42 504-549 34-75 (144)
142 4ghj_A Probable transcriptiona 76.3 2.6 8.9E-05 35.9 4.4 31 513-547 42-72 (101)
143 3bj6_A Transcriptional regulat 76.3 7.1 0.00024 34.0 7.5 48 497-547 28-77 (152)
144 2wiu_B HTH-type transcriptiona 76.1 3.5 0.00012 32.7 5.0 25 523-547 24-48 (88)
145 4b8x_A SCO5413, possible MARR- 76.1 5.3 0.00018 35.4 6.7 53 494-547 20-74 (147)
146 1s3j_A YUSO protein; structura 76.0 4.7 0.00016 35.3 6.2 49 497-548 25-75 (155)
147 3eus_A DNA-binding protein; st 75.8 2.8 9.5E-05 33.9 4.3 25 523-547 26-50 (86)
148 2k9q_A Uncharacterized protein 75.7 2.3 7.9E-05 33.3 3.7 25 523-547 14-38 (77)
149 2r1j_L Repressor protein C2; p 75.6 2.5 8.4E-05 31.7 3.7 25 523-547 17-41 (68)
150 3oop_A LIN2960 protein; protei 75.5 5.1 0.00017 34.7 6.3 51 495-548 23-75 (143)
151 2pex_A Transcriptional regulat 75.5 6.3 0.00022 34.5 7.0 52 495-549 33-86 (153)
152 1neq_A DNA-binding protein NER 75.4 1.6 5.6E-05 35.0 2.7 25 523-547 21-45 (74)
153 2nyx_A Probable transcriptiona 75.4 5 0.00017 36.1 6.4 42 504-548 42-83 (168)
154 1u2w_A CADC repressor, cadmium 75.4 5.8 0.0002 34.3 6.6 39 506-547 41-79 (122)
155 3t76_A VANU, transcriptional r 75.4 3 0.0001 34.5 4.5 25 523-547 36-60 (88)
156 3s2w_A Transcriptional regulat 75.1 5.1 0.00017 35.5 6.3 52 494-548 35-88 (159)
157 3s8q_A R-M controller protein; 75.0 3.3 0.00011 32.7 4.5 25 523-547 23-47 (82)
158 2p5k_A Arginine repressor; DNA 74.8 4.1 0.00014 30.6 4.8 25 522-546 17-46 (64)
159 3nrv_A Putative transcriptiona 74.8 4.8 0.00016 35.0 5.9 44 504-550 37-80 (148)
160 1on2_A Transcriptional regulat 74.7 2.6 9E-05 36.9 4.2 43 505-547 2-45 (142)
161 3boq_A Transcriptional regulat 74.2 4.2 0.00014 35.9 5.5 52 496-549 33-87 (160)
162 3k0l_A Repressor protein; heli 74.2 7.7 0.00026 34.5 7.3 52 494-548 31-84 (162)
163 3g3z_A NMB1585, transcriptiona 74.0 8.1 0.00028 33.4 7.2 49 496-547 18-68 (145)
164 3oio_A Transcriptional regulat 74.0 29 0.00099 29.0 10.6 36 419-454 11-46 (113)
165 2ef8_A C.ECOT38IS, putative tr 73.9 3.6 0.00012 32.3 4.5 25 523-547 22-46 (84)
166 2ewt_A BLDD, putative DNA-bind 73.8 4.3 0.00015 30.8 4.8 25 523-547 20-46 (71)
167 2jt1_A PEFI protein; solution 73.7 2.4 8.1E-05 34.6 3.3 24 523-546 23-46 (77)
168 3fmy_A HTH-type transcriptiona 73.7 2.5 8.6E-05 33.1 3.4 25 523-547 23-47 (73)
169 1hlv_A CENP-B, major centromer 73.4 4.7 0.00016 34.8 5.5 46 504-553 7-54 (131)
170 1adr_A P22 C2 repressor; trans 73.4 2.9 0.0001 32.1 3.7 25 523-547 17-41 (76)
171 2b0l_A GTP-sensing transcripti 73.2 2.5 8.5E-05 36.0 3.5 30 521-554 39-69 (102)
172 3kz3_A Repressor protein CI; f 73.2 2.2 7.6E-05 33.7 3.0 25 523-547 24-48 (80)
173 2a61_A Transcriptional regulat 73.1 4.6 0.00016 34.8 5.3 42 504-548 30-71 (145)
174 2k9s_A Arabinose operon regula 72.8 33 0.0011 28.3 10.5 36 418-453 6-42 (107)
175 4fx0_A Probable transcriptiona 72.8 9.5 0.00033 33.9 7.5 53 496-548 20-76 (148)
176 1p6r_A Penicillinase repressor 72.6 4.1 0.00014 32.5 4.5 43 503-548 5-51 (82)
177 1lj9_A Transcriptional regulat 72.6 6.4 0.00022 33.9 6.2 51 495-548 15-67 (144)
178 3hyi_A Protein DUF199/WHIA; la 72.5 8.9 0.0003 39.0 7.9 51 496-549 233-285 (295)
179 1x57_A Endothelial differentia 72.4 4.9 0.00017 32.4 5.0 25 523-547 25-49 (91)
180 2kpj_A SOS-response transcript 72.4 3.9 0.00013 33.4 4.4 25 523-547 21-45 (94)
181 3ryp_A Catabolite gene activat 72.2 17 0.00057 33.0 9.2 27 524-554 167-193 (210)
182 2hr3_A Probable transcriptiona 72.1 3.8 0.00013 35.5 4.6 42 505-548 33-74 (147)
183 3f6o_A Probable transcriptiona 71.9 3.7 0.00013 35.3 4.3 45 498-546 8-53 (118)
184 3bs3_A Putative DNA-binding pr 71.8 3.9 0.00013 31.4 4.1 25 523-547 22-46 (76)
185 3g5g_A Regulatory protein; tra 71.7 4.1 0.00014 34.1 4.5 25 523-547 40-64 (99)
186 3omt_A Uncharacterized protein 71.6 2.7 9.1E-05 32.5 3.1 25 523-547 20-44 (73)
187 2dk5_A DNA-directed RNA polyme 71.5 3.2 0.00011 34.7 3.7 44 503-547 16-59 (91)
188 3deu_A Transcriptional regulat 71.3 9 0.00031 34.5 7.1 53 494-548 38-92 (166)
189 2ppx_A AGR_C_3184P, uncharacte 71.3 4 0.00014 33.8 4.3 25 523-547 42-66 (99)
190 2gau_A Transcriptional regulat 71.0 19 0.00065 33.3 9.5 49 502-554 148-206 (232)
191 3bja_A Transcriptional regulat 70.9 4.8 0.00017 34.3 4.9 51 495-548 19-71 (139)
192 2fbi_A Probable transcriptiona 70.8 4 0.00014 35.0 4.4 42 504-548 33-74 (142)
193 4ham_A LMO2241 protein; struct 70.5 3.6 0.00012 36.3 4.0 30 521-554 34-64 (134)
194 1j5y_A Transcriptional regulat 70.0 5.7 0.0002 37.0 5.6 38 507-546 21-58 (187)
195 2wus_R RODZ, putative uncharac 70.0 5 0.00017 34.6 4.8 25 523-547 19-43 (112)
196 3u2r_A Regulatory protein MARR 70.0 5.5 0.00019 35.7 5.3 54 494-548 31-86 (168)
197 3tqn_A Transcriptional regulat 69.8 3.9 0.00013 35.1 4.0 29 522-554 30-59 (113)
198 1ais_B TFB TFIIB, protein (tra 69.7 70 0.0024 29.5 18.0 177 334-552 9-193 (200)
199 2eth_A Transcriptional regulat 69.6 5 0.00017 35.3 4.8 43 504-549 41-83 (154)
200 2fu4_A Ferric uptake regulatio 69.6 9.7 0.00033 30.2 6.1 45 504-554 14-64 (83)
201 2o38_A Hypothetical protein; a 69.5 4.6 0.00016 35.2 4.5 25 523-547 52-76 (120)
202 2fbk_A Transcriptional regulat 69.1 5.2 0.00018 36.4 5.0 54 495-548 55-110 (181)
203 1ub9_A Hypothetical protein PH 68.7 4.6 0.00016 32.7 4.0 39 506-547 15-53 (100)
204 3bd1_A CRO protein; transcript 68.7 4.8 0.00016 31.7 4.0 25 523-548 11-35 (79)
205 3jw4_A Transcriptional regulat 68.7 5.4 0.00019 34.8 4.8 50 497-547 29-80 (148)
206 3vk0_A NHTF, transcriptional r 68.3 4.3 0.00015 34.5 3.9 25 523-547 33-57 (114)
207 4aik_A Transcriptional regulat 68.3 14 0.00048 32.8 7.6 51 495-547 17-69 (151)
208 2auw_A Hypothetical protein NE 68.2 4.6 0.00016 37.9 4.4 37 505-547 90-126 (170)
209 2frh_A SARA, staphylococcal ac 67.5 4.2 0.00015 35.1 3.8 50 497-547 25-76 (127)
210 2oz6_A Virulence factor regula 67.3 22 0.00074 32.1 8.9 27 524-554 164-190 (207)
211 3e6m_A MARR family transcripti 67.2 9.2 0.00031 33.9 6.1 50 496-548 40-91 (161)
212 2jsc_A Transcriptional regulat 67.2 5 0.00017 34.5 4.2 36 507-546 21-56 (118)
213 2r0q_C Putative transposon TN5 67.1 3.8 0.00013 38.8 3.7 32 510-546 166-197 (209)
214 3by6_A Predicted transcription 67.0 4.7 0.00016 35.4 4.0 30 521-554 31-61 (126)
215 2ao9_A Phage protein; structur 67.0 10 0.00036 34.9 6.4 44 503-546 22-70 (155)
216 3trb_A Virulence-associated pr 66.9 5.5 0.00019 33.8 4.3 25 523-547 26-50 (104)
217 2hzt_A Putative HTH-type trans 66.8 5.4 0.00018 33.6 4.2 46 498-547 4-51 (107)
218 3oou_A LIN2118 protein; protei 66.8 53 0.0018 27.1 12.3 34 420-453 10-43 (108)
219 3kxa_A NGO0477 protein, putati 66.5 5.6 0.00019 35.6 4.5 25 523-547 80-104 (141)
220 3dv8_A Transcriptional regulat 66.3 15 0.00053 33.5 7.7 27 524-554 169-195 (220)
221 3iwz_A CAP-like, catabolite ac 66.3 29 0.001 31.8 9.7 27 524-554 187-213 (230)
222 3neu_A LIN1836 protein; struct 66.2 6.6 0.00022 34.3 4.8 30 521-554 33-63 (125)
223 2jt1_A PEFI protein; solution 66.1 9.1 0.00031 31.1 5.2 25 429-453 22-46 (77)
224 2zcw_A TTHA1359, transcription 66.1 26 0.0009 31.7 9.2 49 502-554 114-172 (202)
225 1rr7_A Middle operon regulator 66.1 8.2 0.00028 34.4 5.4 39 507-551 81-119 (129)
226 3mlf_A Transcriptional regulat 66.0 6.4 0.00022 33.5 4.6 25 523-547 35-59 (111)
227 1xmk_A Double-stranded RNA-spe 66.0 4.8 0.00016 33.0 3.5 25 523-547 24-49 (79)
228 3mkl_A HTH-type transcriptiona 65.9 49 0.0017 27.9 10.3 30 424-453 16-45 (120)
229 1gdt_A GD resolvase, protein ( 65.8 5.6 0.00019 36.7 4.5 24 523-546 157-180 (183)
230 2hin_A GP39, repressor protein 65.8 6.5 0.00022 31.5 4.2 22 526-547 12-33 (71)
231 3op9_A PLI0006 protein; struct 65.6 5.8 0.0002 33.4 4.2 25 523-547 21-45 (114)
232 2rn7_A IS629 ORFA; helix, all 65.3 4.1 0.00014 34.2 3.2 25 525-549 31-55 (108)
233 2pij_A Prophage PFL 6 CRO; tra 65.3 7.6 0.00026 29.3 4.5 22 523-545 13-34 (67)
234 2wte_A CSA3; antiviral protein 65.0 12 0.0004 36.8 6.9 43 501-546 146-188 (244)
235 2bv6_A MGRA, HTH-type transcri 64.7 7.1 0.00024 33.6 4.7 42 504-548 34-75 (142)
236 2pg4_A Uncharacterized protein 64.6 6.1 0.00021 32.3 4.1 26 523-548 29-55 (95)
237 1lmb_3 Protein (lambda repress 64.5 5.5 0.00019 32.0 3.7 25 523-547 29-53 (92)
238 2l49_A C protein; P2 bacteriop 64.5 6 0.0002 32.2 4.0 25 523-547 16-40 (99)
239 1ft9_A Carbon monoxide oxidati 64.5 22 0.00074 32.8 8.4 27 524-554 163-189 (222)
240 2vn2_A DNAD, chromosome replic 64.3 7.7 0.00026 34.0 4.9 46 504-549 29-76 (128)
241 1b0n_A Protein (SINR protein); 64.1 7.1 0.00024 32.3 4.5 25 523-547 13-37 (111)
242 1tbx_A ORF F-93, hypothetical 64.1 5.6 0.00019 32.6 3.7 42 504-548 5-50 (99)
243 3ivp_A Putative transposon-rel 63.8 8.4 0.00029 33.1 5.0 25 523-547 24-48 (126)
244 1l9z_H Sigma factor SIGA; heli 63.8 87 0.003 33.4 13.8 34 287-320 285-320 (438)
245 2o0m_A Transcriptional regulat 63.6 1.5 5E-05 45.2 0.0 43 505-550 18-60 (345)
246 1z4h_A TORI, TOR inhibition pr 63.4 5.6 0.00019 30.8 3.4 26 523-548 9-34 (66)
247 4ev0_A Transcription regulator 63.2 14 0.00048 33.7 6.7 28 523-554 162-189 (216)
248 2ict_A Antitoxin HIGA; helix-t 63.2 7.4 0.00025 31.5 4.3 25 523-547 20-44 (94)
249 3mky_B Protein SOPB; partition 63.1 10 0.00036 36.1 5.8 46 502-548 21-66 (189)
250 2y75_A HTH-type transcriptiona 63.0 7.6 0.00026 33.7 4.6 29 522-554 24-52 (129)
251 1okr_A MECI, methicillin resis 62.7 8.7 0.0003 32.5 4.8 44 503-549 6-53 (123)
252 2l8n_A Transcriptional repress 62.5 3.5 0.00012 32.5 2.0 23 524-546 9-31 (67)
253 1xn7_A Hypothetical protein YH 62.4 5.8 0.0002 32.3 3.4 25 523-547 15-39 (78)
254 1z7u_A Hypothetical protein EF 62.3 11 0.00038 31.9 5.4 46 498-547 12-59 (112)
255 3e97_A Transcriptional regulat 62.3 6.8 0.00023 36.4 4.4 28 523-554 174-201 (231)
256 2hwv_A DNA-binding response re 62.0 17 0.00059 31.4 6.7 50 504-554 43-97 (121)
257 2g9w_A Conserved hypothetical 61.9 9.8 0.00033 33.4 5.1 46 502-549 4-53 (138)
258 3qwg_A ESX-1 secretion-associa 61.9 5.9 0.0002 34.8 3.7 26 521-546 21-51 (123)
259 3e6c_C CPRK, cyclic nucleotide 61.8 32 0.0011 32.3 9.2 28 523-554 176-203 (250)
260 1z91_A Organic hydroperoxide r 61.7 6.3 0.00021 34.1 3.8 44 504-550 37-80 (147)
261 3fym_A Putative uncharacterize 61.6 8 0.00027 34.0 4.5 26 523-548 15-40 (130)
262 3d0s_A Transcriptional regulat 61.4 34 0.0012 31.5 9.1 28 523-554 176-203 (227)
263 3kcc_A Catabolite gene activat 61.4 26 0.00089 33.5 8.6 27 524-554 217-243 (260)
264 1g2h_A Transcriptional regulat 61.3 7.8 0.00027 29.6 3.8 21 526-546 35-55 (61)
265 3c7j_A Transcriptional regulat 61.2 7.8 0.00027 37.5 4.7 30 521-554 46-75 (237)
266 1rzs_A Antirepressor, regulato 61.0 3.6 0.00012 31.5 1.8 21 525-545 11-31 (61)
267 2h09_A Transcriptional regulat 60.8 6.6 0.00023 34.8 3.8 25 523-547 53-77 (155)
268 3fm5_A Transcriptional regulat 60.8 54 0.0019 28.2 9.9 63 383-453 14-76 (150)
269 3f52_A CLP gene regulator (CLG 60.6 6.3 0.00022 33.3 3.5 25 523-547 40-64 (117)
270 2k4j_A Putative transcriptiona 60.6 14 0.00048 31.7 5.8 50 504-554 41-95 (115)
271 2fmy_A COOA, carbon monoxide o 60.5 7.3 0.00025 36.0 4.3 28 523-554 166-193 (220)
272 1j1v_A Chromosomal replication 60.4 21 0.00072 29.9 6.7 30 523-552 45-75 (94)
273 3sxy_A Transcriptional regulat 59.7 7.4 0.00025 36.8 4.2 37 512-554 25-61 (218)
274 2jvl_A TRMBF1; coactivator, he 59.4 8.1 0.00028 32.6 4.0 25 523-547 48-72 (107)
275 2fxa_A Protease production reg 59.3 16 0.00056 34.3 6.5 41 504-547 45-85 (207)
276 3la7_A Global nitrogen regulat 59.3 29 0.001 32.6 8.4 28 523-554 192-219 (243)
277 2ek5_A Predicted transcription 59.2 8.1 0.00028 34.1 4.1 30 521-554 24-54 (129)
278 1fx7_A Iron-dependent represso 58.9 4 0.00014 39.3 2.2 43 504-547 3-47 (230)
279 2eby_A Putative HTH-type trans 58.3 8.3 0.00028 32.4 3.8 25 523-547 23-47 (113)
280 2kfs_A Conserved hypothetical 58.1 5.1 0.00018 36.8 2.6 25 523-547 30-54 (148)
281 3lsg_A Two-component response 58.0 23 0.0008 29.0 6.6 25 524-548 19-43 (103)
282 1r71_A Transcriptional repress 57.9 11 0.00036 35.5 4.8 41 503-546 34-74 (178)
283 3lfp_A CSP231I C protein; tran 57.7 9.8 0.00033 31.1 4.1 25 523-547 13-41 (98)
284 3cec_A Putative antidote prote 57.7 8.3 0.00028 31.9 3.7 25 523-547 30-54 (104)
285 1v4r_A Transcriptional repress 57.2 3.5 0.00012 34.4 1.2 30 521-554 31-61 (102)
286 2v79_A DNA replication protein 57.0 12 0.00042 33.3 4.9 48 504-551 29-78 (135)
287 2ecc_A Homeobox and leucine zi 57.0 15 0.00051 29.9 4.9 51 505-555 10-61 (76)
288 3eco_A MEPR; mutlidrug efflux 56.9 37 0.0013 28.7 8.0 63 384-453 7-69 (139)
289 3r1f_A ESX-1 secretion-associa 56.6 7.5 0.00026 34.6 3.4 25 522-546 24-53 (135)
290 2bnm_A Epoxidase; oxidoreducta 56.5 10 0.00035 34.9 4.5 25 523-547 22-46 (198)
291 1zyb_A Transcription regulator 56.3 8.2 0.00028 36.2 3.9 27 524-554 186-212 (232)
292 1y9q_A Transcriptional regulat 56.2 10 0.00035 34.9 4.4 25 523-547 23-47 (192)
293 3b73_A PHIH1 repressor-like pr 56.1 11 0.00037 32.7 4.2 40 505-547 11-52 (111)
294 3e7l_A Transcriptional regulat 56.1 13 0.00045 28.4 4.3 35 509-546 20-54 (63)
295 2cw1_A SN4M; lambda CRO fold, 56.0 8 0.00027 30.4 3.1 23 524-546 13-35 (65)
296 3bdn_A Lambda repressor; repre 55.8 7 0.00024 37.1 3.3 25 523-547 29-53 (236)
297 3nrv_A Putative transcriptiona 55.5 35 0.0012 29.3 7.6 72 370-453 4-76 (148)
298 1y6u_A XIS, excisionase from t 55.3 6.8 0.00023 31.3 2.6 25 523-547 15-39 (70)
299 2da1_A Alpha-fetoprotein enhan 55.2 20 0.00068 27.8 5.3 51 505-555 14-65 (70)
300 2di3_A Bacterial regulatory pr 55.0 12 0.00042 35.7 5.0 37 512-554 17-54 (239)
301 3b02_A Transcriptional regulat 54.6 44 0.0015 30.0 8.5 49 502-554 107-165 (195)
302 2k9l_A RNA polymerase sigma fa 54.4 24 0.00083 28.2 5.8 51 491-544 15-68 (76)
303 2k02_A Ferrous iron transport 54.3 5.4 0.00018 33.3 1.9 25 523-547 15-39 (87)
304 1sd4_A Penicillinase repressor 54.3 13 0.00043 31.6 4.4 44 503-549 6-53 (126)
305 3f6v_A Possible transcriptiona 54.2 8.7 0.0003 34.8 3.5 36 507-546 58-93 (151)
306 3rkx_A Biotin-[acetyl-COA-carb 53.9 12 0.00041 38.3 4.8 44 507-555 3-46 (323)
307 1vz0_A PARB, chromosome partit 53.9 14 0.00049 35.8 5.2 41 503-546 116-156 (230)
308 3oou_A LIN2118 protein; protei 53.8 20 0.00069 29.8 5.5 26 523-548 20-45 (108)
309 3hrs_A Metalloregulator SCAR; 53.8 14 0.00049 35.1 5.2 35 513-547 8-43 (214)
310 4ich_A Transcriptional regulat 53.7 8 0.00027 38.2 3.4 22 523-544 139-160 (311)
311 3mn2_A Probable ARAC family tr 53.4 20 0.00067 29.7 5.4 26 523-548 17-42 (108)
312 3deu_A Transcriptional regulat 53.3 68 0.0023 28.5 9.4 63 383-453 28-90 (166)
313 2qq9_A Diphtheria toxin repres 53.2 6.1 0.00021 38.0 2.4 44 504-547 3-47 (226)
314 1bia_A BIRA bifunctional prote 53.1 17 0.00059 36.8 5.9 38 506-546 4-41 (321)
315 3bro_A Transcriptional regulat 53.1 48 0.0016 28.0 8.0 63 384-453 10-72 (141)
316 3rjp_A COVR; winged helix-turn 53.0 29 0.00099 28.2 6.3 50 504-554 22-76 (96)
317 3a03_A T-cell leukemia homeobo 52.8 24 0.00081 26.2 5.2 51 504-554 3-54 (56)
318 1gxq_A PHOB, phosphate regulon 52.8 19 0.00064 30.1 5.2 50 504-554 31-85 (106)
319 2hs5_A Putative transcriptiona 52.7 10 0.00036 36.5 4.0 37 512-554 41-77 (239)
320 4a0z_A Transcription factor FA 52.6 15 0.0005 34.8 4.9 36 507-545 12-47 (190)
321 1hw1_A FADR, fatty acid metabo 52.6 11 0.00039 35.8 4.2 30 521-554 27-57 (239)
322 1pdn_C Protein (PRD paired); p 52.3 51 0.0017 27.2 8.0 24 432-455 34-57 (128)
323 3edp_A LIN2111 protein; APC883 52.2 13 0.00044 36.0 4.6 30 521-554 29-59 (236)
324 1j9i_A GPNU1 DBD;, terminase s 51.8 6.9 0.00024 30.3 2.1 24 525-548 3-26 (68)
325 2da4_A Hypothetical protein DK 51.6 28 0.00094 27.8 5.8 51 505-555 15-70 (80)
326 1hkq_A REPA, replication prote 51.5 34 0.0012 30.1 6.8 58 497-554 11-77 (132)
327 2p5t_A Putative transcriptiona 51.2 3.2 0.00011 37.5 0.0 25 523-547 13-37 (158)
328 3lsg_A Two-component response 51.2 97 0.0033 25.1 12.6 31 424-454 11-42 (103)
329 2vz4_A Tipal, HTH-type transcr 51.1 8.7 0.0003 32.6 2.8 26 524-549 1-26 (108)
330 2pmu_A Response regulator PHOP 51.0 20 0.00069 30.2 5.1 50 504-554 34-88 (110)
331 2wv0_A YVOA, HTH-type transcri 50.9 15 0.00051 35.7 4.8 30 521-554 30-60 (243)
332 3k2a_A Homeobox protein MEIS2; 50.7 31 0.0011 26.7 5.8 54 504-557 4-61 (67)
333 1k78_A Paired box protein PAX5 50.6 83 0.0029 27.3 9.4 24 432-455 49-72 (149)
334 3bwg_A Uncharacterized HTH-typ 50.3 15 0.0005 35.6 4.6 30 521-554 25-55 (239)
335 1yz8_P Pituitary homeobox 2; D 50.1 44 0.0015 25.7 6.6 52 505-556 10-62 (68)
336 1rp3_A RNA polymerase sigma fa 49.9 1.5E+02 0.0052 27.0 15.0 34 288-321 101-134 (239)
337 2h8r_A Hepatocyte nuclear fact 49.7 18 0.00063 35.2 5.1 25 523-547 43-67 (221)
338 1ic8_A Hepatocyte nuclear fact 49.3 29 0.00098 33.0 6.4 24 523-546 42-65 (194)
339 2bgc_A PRFA; bacterial infecti 49.1 11 0.00038 35.4 3.5 27 524-554 169-196 (238)
340 3uj3_X DNA-invertase; helix-tu 49.1 3.6 0.00012 38.4 0.0 34 510-548 149-182 (193)
341 1stz_A Heat-inducible transcri 49.0 19 0.00064 37.1 5.4 42 505-546 15-60 (338)
342 4aik_A Transcriptional regulat 48.9 1.2E+02 0.0042 26.5 10.3 26 428-453 43-68 (151)
343 2dmq_A LIM/homeobox protein LH 48.8 29 0.00099 27.6 5.5 53 505-557 14-67 (80)
344 1opc_A OMPR, OMPRC; transcript 48.6 14 0.00049 31.0 3.8 50 504-554 31-85 (110)
345 2fbh_A Transcriptional regulat 48.3 1.2E+02 0.0042 25.4 10.0 62 384-453 13-74 (146)
346 1ntc_A Protein (nitrogen regul 48.3 12 0.00041 30.8 3.1 37 507-546 50-86 (91)
347 3eet_A Putative GNTR-family tr 48.2 17 0.00057 36.1 4.7 30 521-554 49-79 (272)
348 1ahd_P Antennapedia protein mu 48.1 50 0.0017 25.4 6.6 53 505-557 9-62 (68)
349 3f8m_A GNTR-family protein tra 48.0 16 0.00056 35.5 4.6 32 519-554 30-62 (248)
350 2fa5_A Transcriptional regulat 48.0 95 0.0033 26.8 9.4 63 382-453 22-85 (162)
351 1p4x_A Staphylococcal accessor 48.0 23 0.0008 34.7 5.7 44 504-548 155-198 (250)
352 2ofy_A Putative XRE-family tra 47.8 19 0.00065 28.3 4.2 22 526-547 29-50 (86)
353 3fx3_A Cyclic nucleotide-bindi 47.5 11 0.00038 35.1 3.2 28 523-554 177-204 (237)
354 2fsw_A PG_0823 protein; alpha- 47.3 12 0.00042 31.3 3.1 45 499-547 16-62 (107)
355 2p4w_A Transcriptional regulat 47.3 13 0.00045 35.3 3.7 43 500-546 7-50 (202)
356 3dn7_A Cyclic nucleotide bindi 47.3 8.6 0.0003 34.7 2.3 25 523-547 167-191 (194)
357 3lwf_A LIN1550 protein, putati 47.1 29 0.001 31.7 5.9 43 504-546 21-66 (159)
358 2l1p_A DNA-binding protein SAT 47.1 12 0.0004 31.1 2.8 24 524-547 32-55 (83)
359 3rqi_A Response regulator prot 46.9 10 0.00035 34.1 2.7 39 504-545 139-177 (184)
360 3dkw_A DNR protein; CRP-FNR, H 46.9 14 0.00049 33.9 3.8 29 523-555 177-205 (227)
361 4bbr_M Transcription initiatio 46.9 34 0.0012 35.2 7.0 180 338-557 130-325 (345)
362 2dmn_A Homeobox protein TGIF2L 46.7 48 0.0016 26.7 6.5 54 505-558 14-71 (83)
363 2xrn_A HTH-type transcriptiona 46.6 16 0.00053 35.4 4.2 26 522-547 19-44 (241)
364 3pvv_A Chromosomal replication 46.6 48 0.0016 28.1 6.7 31 523-553 49-79 (101)
365 3oop_A LIN2960 protein; protei 46.6 65 0.0022 27.4 7.9 61 384-453 13-73 (143)
366 1mkm_A ICLR transcriptional re 46.5 18 0.0006 35.1 4.6 25 523-547 22-46 (249)
367 3knw_A Putative transcriptiona 46.4 1.4E+02 0.0048 26.3 10.5 79 297-375 28-108 (212)
368 2oa4_A SIR5; structure, struct 46.3 7 0.00024 33.6 1.4 35 511-549 41-75 (101)
369 1ig7_A Homeotic protein MSX-1; 46.3 31 0.0011 25.6 4.9 50 505-554 7-57 (58)
370 2f2e_A PA1607; transcription f 46.2 24 0.00083 31.4 5.1 25 523-547 36-60 (146)
371 2g7u_A Transcriptional regulat 45.9 25 0.00086 34.2 5.6 25 522-546 27-51 (257)
372 2e1o_A Homeobox protein PRH; D 45.9 31 0.001 26.8 5.1 52 505-556 14-66 (70)
373 1ylf_A RRF2 family protein; st 45.6 25 0.00087 31.3 5.1 26 521-546 27-52 (149)
374 1jgg_A Segmentation protein EV 45.6 33 0.0011 25.7 5.1 50 505-554 8-58 (60)
375 3oio_A Transcriptional regulat 45.5 49 0.0017 27.5 6.7 46 343-388 14-59 (113)
376 2dmu_A Homeobox protein goosec 45.3 28 0.00097 26.9 4.8 51 505-555 14-65 (70)
377 1umq_A Photosynthetic apparatu 45.2 19 0.00064 29.5 3.8 22 525-546 55-76 (81)
378 3nau_A Zinc fingers and homeob 44.6 38 0.0013 26.8 5.3 51 506-556 12-63 (66)
379 1puf_B PRE-B-cell leukemia tra 44.6 37 0.0013 26.5 5.4 56 504-559 7-66 (73)
380 2hdd_A Protein (engrailed home 44.4 31 0.0011 25.9 4.7 50 505-554 10-60 (61)
381 2htj_A P fimbrial regulatory p 44.4 28 0.00096 27.5 4.7 24 431-454 14-37 (81)
382 2qlz_A Transcription factor PF 44.3 35 0.0012 33.2 6.3 25 523-547 177-201 (232)
383 1xn7_A Hypothetical protein YH 44.2 30 0.001 27.9 4.9 23 431-453 16-38 (78)
384 2jml_A DNA binding domain/tran 44.0 13 0.00045 29.7 2.7 24 524-547 5-28 (81)
385 3plo_X DNA-invertase; resolvas 43.8 4.9 0.00017 37.6 0.0 29 523-551 157-185 (193)
386 2jzy_A Transcriptional regulat 43.7 20 0.00069 30.4 4.0 49 504-553 28-81 (112)
387 1x2n_A Homeobox protein pknox1 43.4 24 0.00083 27.6 4.1 55 504-558 13-71 (73)
388 3t8r_A Staphylococcus aureus C 43.3 30 0.001 30.8 5.2 25 522-546 26-50 (143)
389 3e6m_A MARR family transcripti 43.3 67 0.0023 28.1 7.6 62 383-453 28-89 (161)
390 3zq7_A KDP operon transcriptio 43.3 35 0.0012 28.0 5.4 50 504-554 28-82 (102)
391 1r8d_A Transcription activator 43.0 11 0.00037 32.0 2.1 25 525-549 3-27 (109)
392 2k9s_A Arabinose operon regula 42.9 53 0.0018 27.0 6.5 26 523-548 19-44 (107)
393 1b72_B Protein (PBX1); homeodo 42.7 34 0.0012 27.6 5.1 55 504-558 7-65 (87)
394 2cue_A Paired box protein PAX6 42.7 42 0.0014 26.7 5.6 52 505-556 14-66 (80)
395 1yyv_A Putative transcriptiona 42.6 24 0.00081 31.0 4.4 25 523-547 47-72 (131)
396 2o0y_A Transcriptional regulat 42.6 25 0.00085 34.3 5.0 25 522-546 36-60 (260)
397 1hqc_A RUVB; extended AAA-ATPa 42.3 27 0.00094 34.1 5.3 44 504-547 244-287 (324)
398 2h1k_A IPF-1, pancreatic and d 42.3 42 0.0014 25.4 5.2 51 505-555 10-61 (63)
399 1b72_A Protein (homeobox prote 42.3 46 0.0016 27.6 5.9 54 504-557 40-94 (97)
400 1zq3_P PRD-4, homeotic bicoid 42.2 54 0.0018 25.2 5.9 53 505-557 9-62 (68)
401 1nk2_P Homeobox protein VND; h 41.9 41 0.0014 26.6 5.3 54 505-558 16-70 (77)
402 3gbg_A TCP pilus virulence reg 41.9 1.8E+02 0.0062 27.6 11.1 77 416-537 170-246 (276)
403 2k9m_A RNA polymerase sigma fa 41.8 63 0.0021 28.6 7.0 48 503-554 15-65 (130)
404 2k40_A Homeobox expressed in E 41.7 39 0.0013 25.9 5.0 51 505-555 8-59 (67)
405 1k61_A Mating-type protein alp 41.6 92 0.0031 23.1 7.0 51 504-554 4-58 (60)
406 2ia2_A Putative transcriptiona 41.0 24 0.00084 34.5 4.6 26 522-547 34-59 (265)
407 3a02_A Homeobox protein arista 41.0 29 0.00099 26.0 4.1 50 505-554 6-56 (60)
408 2obp_A Putative DNA-binding pr 40.9 56 0.0019 27.5 6.2 44 504-547 13-59 (96)
409 3ihu_A Transcriptional regulat 40.8 18 0.00061 34.2 3.5 37 512-554 29-65 (222)
410 3k2z_A LEXA repressor; winged 40.3 40 0.0014 31.3 5.8 33 421-453 14-46 (196)
411 3tgn_A ADC operon repressor AD 40.3 34 0.0012 29.2 5.0 22 432-453 52-73 (146)
412 2k27_A Paired box protein PAX- 40.0 1.2E+02 0.0041 26.6 8.8 25 432-456 42-66 (159)
413 1xmk_A Double-stranded RNA-spe 39.9 34 0.0012 27.9 4.5 24 431-454 25-49 (79)
414 2rdp_A Putative transcriptiona 39.8 1.1E+02 0.0039 25.9 8.4 23 431-453 56-78 (150)
415 3mkl_A HTH-type transcriptiona 39.6 51 0.0017 27.8 6.0 45 343-388 14-58 (120)
416 1akh_A Protein (mating-type pr 39.3 29 0.001 26.0 3.9 48 504-551 11-59 (61)
417 3bpv_A Transcriptional regulat 39.2 89 0.0031 26.1 7.5 61 384-453 5-65 (138)
418 3rkq_A Homeobox protein NKX-2. 39.0 41 0.0014 24.6 4.6 48 505-552 9-57 (58)
419 1b0n_A Protein (SINR protein); 38.5 38 0.0013 27.7 4.8 24 431-454 14-37 (111)
420 1d5y_A ROB transcription facto 38.4 63 0.0022 31.2 7.2 34 289-322 6-39 (292)
421 3lfp_A CSP231I C protein; tran 38.2 53 0.0018 26.6 5.6 70 431-513 14-89 (98)
422 1fjl_A Paired protein; DNA-bin 38.0 49 0.0017 26.4 5.2 52 505-556 25-77 (81)
423 2fjr_A Repressor protein CI; g 37.8 28 0.00095 31.7 4.2 22 526-547 22-43 (189)
424 1eto_A FIS, factor for inversi 37.1 35 0.0012 28.8 4.3 22 525-546 72-93 (98)
425 3jw4_A Transcriptional regulat 37.0 53 0.0018 28.2 5.8 24 430-453 56-79 (148)
426 1ftt_A TTF-1 HD, thyroid trans 36.9 51 0.0017 25.4 5.0 52 505-556 9-61 (68)
427 2ovg_A Phage lambda CRO; trans 36.8 28 0.00095 27.2 3.4 20 526-545 15-34 (66)
428 3k0l_A Repressor protein; heli 36.8 80 0.0027 27.6 7.0 63 382-453 20-82 (162)
429 2jrt_A Uncharacterized protein 36.7 14 0.00046 31.3 1.7 26 523-548 48-73 (95)
430 2k02_A Ferrous iron transport 36.6 34 0.0012 28.4 4.1 23 431-453 16-38 (87)
431 3r4k_A Transcriptional regulat 36.3 23 0.00077 34.7 3.5 25 522-546 19-43 (260)
432 1q06_A Transcriptional regulat 36.3 17 0.00057 32.3 2.3 25 525-549 1-25 (135)
433 2dms_A Homeobox protein OTX2; 36.2 39 0.0013 26.9 4.4 53 505-557 14-67 (80)
434 1bl0_A Protein (multiple antib 35.9 29 0.00098 29.9 3.8 26 523-548 26-51 (129)
435 2da2_A Alpha-fetoprotein enhan 35.9 23 0.0008 27.4 2.9 50 505-554 14-64 (70)
436 2da3_A Alpha-fetoprotein enhan 35.7 26 0.00088 27.8 3.2 30 526-555 46-75 (80)
437 2nnn_A Probable transcriptiona 35.6 1.4E+02 0.0048 24.8 8.2 61 383-453 14-74 (140)
438 2dn0_A Zinc fingers and homeob 35.3 35 0.0012 26.9 3.9 51 505-555 15-66 (76)
439 1iuf_A Centromere ABP1 protein 35.0 18 0.00062 32.2 2.4 43 504-548 11-60 (144)
440 4dyq_A Gene 1 protein; GP1, oc 34.7 29 0.001 30.8 3.7 32 512-547 20-52 (140)
441 1u8b_A ADA polyprotein; protei 34.5 68 0.0023 27.5 6.0 25 523-547 92-116 (133)
442 3bja_A Transcriptional regulat 34.3 77 0.0026 26.5 6.3 23 431-453 47-69 (139)
443 1uhs_A HOP, homeodomain only p 34.2 74 0.0025 24.6 5.6 52 505-556 8-61 (72)
444 2yu3_A DNA-directed RNA polyme 34.2 50 0.0017 27.8 4.8 47 502-553 32-78 (95)
445 2k4b_A Transcriptional regulat 34.2 13 0.00046 31.3 1.3 46 501-549 29-78 (99)
446 3mq0_A Transcriptional repress 33.6 20 0.00069 35.4 2.7 25 522-546 43-67 (275)
447 3hh0_A Transcriptional regulat 33.6 20 0.00069 32.3 2.4 27 523-549 3-29 (146)
448 3hot_A Transposable element ma 33.4 39 0.0013 33.6 4.8 36 509-548 11-53 (345)
449 1puf_A HOX-1.7, homeobox prote 33.4 59 0.002 25.6 5.0 52 505-556 20-72 (77)
450 1b8i_A Ultrabithorax, protein 33.4 43 0.0015 26.8 4.2 52 504-555 26-78 (81)
451 2p8t_A Hypothetical protein PH 33.3 41 0.0014 32.2 4.6 44 505-554 13-56 (200)
452 2dmt_A Homeobox protein BARH-l 33.3 30 0.001 27.6 3.2 50 505-554 24-74 (80)
453 1lj9_A Transcriptional regulat 33.3 1.5E+02 0.0052 24.8 8.1 61 384-453 5-65 (144)
454 1z6r_A MLC protein; transcript 33.3 54 0.0019 33.7 6.0 38 510-550 19-56 (406)
455 1o5l_A Transcriptional regulat 33.2 22 0.00076 32.7 2.8 28 523-554 163-190 (213)
456 3df8_A Possible HXLR family tr 33.1 39 0.0013 28.5 4.1 24 523-546 39-65 (111)
457 2dmp_A Zinc fingers and homeob 33.0 53 0.0018 26.9 4.7 51 505-555 20-71 (89)
458 3bj6_A Transcriptional regulat 32.8 1.2E+02 0.0041 25.8 7.4 23 431-453 54-76 (152)
459 3t72_q RNA polymerase sigma fa 32.6 1.2E+02 0.0041 25.4 7.0 25 430-454 38-62 (99)
460 2ly9_A Zinc fingers and homeob 32.6 36 0.0012 26.5 3.5 54 505-558 13-67 (74)
461 3pxp_A Helix-turn-helix domain 32.5 30 0.001 34.9 3.7 25 523-547 24-48 (292)
462 3s2w_A Transcriptional regulat 32.4 1.2E+02 0.0043 26.2 7.5 63 382-453 24-86 (159)
463 2cra_A Homeobox protein HOX-B1 32.2 25 0.00084 27.3 2.4 50 505-554 14-64 (70)
464 2pjp_A Selenocysteine-specific 31.9 77 0.0026 27.1 5.9 25 523-547 19-43 (121)
465 2hi3_A Homeodomain-only protei 31.9 81 0.0028 24.5 5.5 52 505-556 9-62 (73)
466 2gxg_A 146AA long hypothetical 31.9 1.4E+02 0.0048 25.1 7.6 23 431-453 50-72 (146)
467 2z9m_A Response regulator YYCF 31.7 76 0.0026 26.9 5.8 50 504-554 36-90 (120)
468 2r5y_A Homeotic protein sex co 31.7 64 0.0022 26.1 5.0 51 504-554 34-85 (88)
469 3cta_A Riboflavin kinase; stru 31.2 27 0.00091 33.3 3.0 28 521-548 24-51 (230)
470 3k69_A Putative transcription 31.1 33 0.0011 31.3 3.5 29 522-554 26-54 (162)
471 2hr3_A Probable transcriptiona 30.9 2E+02 0.007 24.1 8.6 23 431-453 50-72 (147)
472 2m0c_A Homeobox protein arista 30.8 49 0.0017 25.7 4.0 51 505-555 16-67 (75)
473 3cjn_A Transcriptional regulat 30.8 1.1E+02 0.0037 26.5 6.9 62 383-453 27-88 (162)
474 2a61_A Transcriptional regulat 30.6 1.1E+02 0.0039 25.7 6.8 23 431-453 47-69 (145)
475 1bl0_A Protein (multiple antib 30.4 74 0.0025 27.2 5.5 42 346-387 21-62 (129)
476 1s3j_A YUSO protein; structura 30.2 1.2E+02 0.0042 25.8 7.1 23 431-453 51-73 (155)
477 3g3z_A NMB1585, transcriptiona 30.0 2.1E+02 0.0071 24.1 8.5 23 431-453 45-67 (145)
478 1x3u_A Transcriptional regulat 29.9 1E+02 0.0035 23.5 5.8 26 429-454 29-54 (79)
479 3gpv_A Transcriptional regulat 29.7 21 0.00073 32.1 1.9 26 524-549 16-41 (148)
480 3ech_A MEXR, multidrug resista 29.7 2E+02 0.0067 24.2 8.2 23 431-453 51-73 (142)
481 4a5n_A Uncharacterized HTH-typ 29.6 45 0.0015 29.5 4.0 46 498-546 16-62 (131)
482 1hsj_A Fusion protein consisti 29.5 41 0.0014 35.2 4.4 53 494-547 389-443 (487)
483 2zhg_A Redox-sensitive transcr 29.4 26 0.00087 31.9 2.4 27 523-549 10-36 (154)
484 1mnm_C Protein (MAT alpha-2 tr 29.4 60 0.002 26.2 4.4 50 504-553 33-86 (87)
485 2da5_A Zinc fingers and homeob 29.0 55 0.0019 25.8 4.0 51 505-555 14-65 (75)
486 3ppb_A Putative TETR family tr 28.5 2.8E+02 0.0095 23.7 11.5 75 297-371 23-98 (195)
487 3u1d_A Uncharacterized protein 28.5 74 0.0025 29.1 5.3 46 500-546 21-68 (151)
488 2hqn_A Putative transcriptiona 28.3 18 0.00061 30.3 1.1 50 504-554 29-83 (109)
489 3eup_A Transcriptional regulat 28.3 1.6E+02 0.0055 25.6 7.6 72 303-374 32-103 (204)
490 2heo_A Z-DNA binding protein 1 28.1 59 0.002 25.0 4.0 27 428-454 22-48 (67)
491 3gp4_A Transcriptional regulat 28.1 1.3E+02 0.0045 26.6 6.9 22 433-454 4-25 (142)
492 1dw9_A Cyanate lyase; cyanate 28.1 40 0.0014 31.1 3.4 32 511-546 17-48 (156)
493 3qbm_A TETR transcriptional re 28.0 2.9E+02 0.0098 23.7 11.0 78 296-373 20-98 (199)
494 1d5y_A ROB transcription facto 28.0 1.6E+02 0.0055 28.2 8.1 36 418-453 6-41 (292)
495 2qww_A Transcriptional regulat 28.0 1.1E+02 0.0039 26.1 6.4 23 431-453 55-77 (154)
496 2lk2_A Homeobox protein TGIF1; 27.9 1.3E+02 0.0045 25.0 6.3 54 504-557 11-68 (89)
497 2gqq_A Leucine-responsive regu 27.9 4.1 0.00014 37.0 -3.3 43 505-554 11-53 (163)
498 1bw5_A ISL-1HD, insulin gene e 27.5 43 0.0015 25.5 3.1 49 505-553 10-59 (66)
499 3nxc_A HTH-type protein SLMA; 27.4 2.3E+02 0.0077 24.8 8.5 72 299-370 41-113 (212)
500 2djn_A Homeobox protein DLX-5; 27.3 38 0.0013 26.2 2.8 50 505-554 14-64 (70)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=9e-55 Score=468.44 Aligned_cols=315 Identities=31% Similarity=0.569 Sum_probs=284.2
Q ss_pred CCCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhhCCCCcHHHHHH---
Q 008352 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 310 (569)
Q Consensus 252 ~~~d~l~~yl~~~~~~~lLT~eEE~eL~~~iq~~~~le~~~~------------------~l~~~~g~~pt~~ewA~--- 310 (569)
...|+++.||++|+++||||+|||++|+++|+.+..++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 356899999999999999999999999999998754332211 11223567788888743
Q ss_pred ---------HcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCch
Q 008352 311 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381 (569)
Q Consensus 311 ---------a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rF 381 (569)
+.|++...|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23566788889998999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCc
Q 008352 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 459 (569)
Q Consensus 382 STYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~ 459 (569)
+|||+||||+.|.++|++++|.||+|.|+...+++++++.+.+.+.+||.|+.++||+.+| +++++|..++.....++
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999998888899
Q ss_pred ccCCCCCCCCCcchhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHH
Q 008352 460 SMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKE 539 (569)
Q Consensus 460 SLD~~v~~d~~~~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISre 539 (569)
|+|.+++++++..+.+++.+....+|++.+...++...|..+|+.||++||.||.+||||+||+++|++|||+.||||++
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~e 410 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRE 410 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHH
Confidence 99999887766677888877665678888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 008352 540 RVRQLESRALYRLK-QSLGGKASYGYAD 566 (569)
Q Consensus 540 rVRqie~RALkKLR-~~l~~~~L~~yld 566 (569)
||||+++||++||| +.+....|++|++
T Consensus 411 rVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 411 RIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999 7888888999874
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=6.7e-55 Score=469.14 Aligned_cols=311 Identities=33% Similarity=0.589 Sum_probs=276.1
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hhCCCCcHHH----
Q 008352 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQS---------------------QFGREPTLIE---- 307 (569)
Q Consensus 253 ~~d~l~~yl~~~~~~~lLT~eEE~eL~~~iq~~~~le~~~~~l~~---------------------~~g~~pt~~e---- 307 (569)
..|+++.||++|+++|+||+|||++|+++|+.+..+.. .|.. ..++.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDP 153 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTT
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhh
Confidence 56899999999999999999999999999998654332 2222 2234555433
Q ss_pred -----HHH---HcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCC
Q 008352 308 -----WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379 (569)
Q Consensus 308 -----wA~---a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~ 379 (569)
|+. ++++++..|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||+|||+|+++|||.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~ 233 (423)
T 2a6h_F 154 KTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRF 233 (423)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred hhhhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 332 346678889999988899999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCC
Q 008352 380 RFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRM 457 (569)
Q Consensus 380 rFSTYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~ 457 (569)
+|+|||+||||+.|.++|++++|+||+|.|+...+++++++.+.+.+.+||.|+.++||+.+| +++++|..++.....
T Consensus 234 ~FstYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~ 313 (423)
T 2a6h_F 234 KFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQE 313 (423)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999998889
Q ss_pred CcccCCCCCCCCCcchhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCC
Q 008352 458 PLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 537 (569)
Q Consensus 458 ~~SLD~~v~~d~~~~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGIS 537 (569)
++|+|.+++++++..+.+++++....+|++.+...++...|..+|+.||++||.||.+||||+||+++|++|||+.||||
T Consensus 314 ~~Sld~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS 393 (423)
T 2a6h_F 314 PVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVT 393 (423)
T ss_dssp CEESSCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSC
T ss_pred CcccccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcC
Confidence 99999999877777788888877666888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhcCchhhhhh
Q 008352 538 KERVRQLESRALYRLK-QSLGGKASYGYAD 566 (569)
Q Consensus 538 rerVRqie~RALkKLR-~~l~~~~L~~yld 566 (569)
++||||++.+|++||| +.+....|++|++
T Consensus 394 ~erVrqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 394 RERIRQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 9999999999999999 8888888998874
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=5.2e-42 Score=384.36 Aligned_cols=251 Identities=34% Similarity=0.671 Sum_probs=236.9
Q ss_pred HHHHHHHHhccH-HH---HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHH
Q 008352 316 CRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391 (569)
Q Consensus 316 ~~~L~~~l~~G~-~A---re~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRq 391 (569)
...|+.+++.|+ .| ++.||..|+++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+||++|||||
T Consensus 358 ~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 456777777666 66 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCc
Q 008352 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471 (569)
Q Consensus 392 aI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~ 471 (569)
.|.++++++.+.+|+|.|+...+++++++.+.+.+++||.||.+|||+.+|+++++++.++.....++|++.+++++++.
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred chhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 472 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 472 ~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
.+.+++.+....+|++.+...++...|..+|..||+++|.||.||||+++++++|++|||+.||||++||+++++||+++
T Consensus 518 ~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp CGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred cHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88888888777789998888888889999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhhcCchhhhhh
Q 008352 552 LKQSLGGKASYGYAD 566 (569)
Q Consensus 552 LR~~l~~~~L~~yld 566 (569)
||+++....++.|+|
T Consensus 598 LR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 598 LRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTSCSSSCSSTTCC-
T ss_pred hhCcchhhHHHHHhc
Confidence 999999999999986
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=2.9e-36 Score=302.60 Aligned_cols=209 Identities=33% Similarity=0.577 Sum_probs=132.0
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHh--h-----------------------hhCCCCcHH
Q 008352 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 306 (569)
Q Consensus 253 ~~d~l~~yl~~~~~~~lLT~eEE~eL~~~iq~~~~-le~~~~~l~--~-----------------------~~g~~pt~~ 306 (569)
.+|+++.||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 57899999999999999999999999999999765 222221100 0 024789999
Q ss_pred HHHHHcCCC----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchh
Q 008352 307 EWAKAIGLS----CRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (569)
Q Consensus 307 ewA~a~g~~----~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFS 382 (569)
+||++.|++ ...|...+++|+.|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 999998885 3456677888899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCCcc
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 460 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lg--is~e~v~~ll~~~~~~~S 460 (569)
||++||||++|.++++++.+.+++|.++...++++.++.+.+...+++.||.+|||+.|| +++++|...+...+..+|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999988877776
Q ss_pred c
Q 008352 461 M 461 (569)
Q Consensus 461 L 461 (569)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=100.00 E-value=6.3e-32 Score=262.97 Aligned_cols=222 Identities=22% Similarity=0.304 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcccc
Q 008352 327 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (569)
Q Consensus 327 ~~Are~LI~~nlrLV~sIArry~---~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~ 403 (569)
..|++.|+..|.++|+++|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||++.+.++++++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 35899999999999999999998 6789999999999999999999999999999999999999999999999876
Q ss_pred eecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcC--CCcccCCCCCCCCCcchhhcccCCC
Q 008352 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR--MPLSMQQPVWADQDTTFQEITADTG 481 (569)
Q Consensus 404 IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~--~~~SLD~~v~~d~~~~l~d~i~D~~ 481 (569)
+.|.+.....++++++...+....|+.|+.+++|+.+|++++++..++.... ...|++.++.++++.. .++ +++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~- 164 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS- 164 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC-
Confidence 4678888889999999999999999999999999999999999988775432 2345554432222122 233 222
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 482 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 482 ~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
..+|++.+...+....|..+|..||+++|.||.++|+ +++|++|||+.||||.++|++++++|+++||+.+..
T Consensus 165 ~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3367888888888889999999999999999999998 899999999999999999999999999999998754
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=1.3e-31 Score=260.55 Aligned_cols=216 Identities=26% Similarity=0.440 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhccccee
Q 008352 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405 (569)
Q Consensus 326 G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IR 405 (569)
+..|++.|+..|.++|+++|++|.++..+++||+|||+++||+++++||+.+|.+|.||+++|+++.+.++++++. .++
T Consensus 26 d~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~ 104 (243)
T 1l0o_C 26 DQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVK 104 (243)
T ss_dssp --------------------------------------------------------------------------CC-CCT
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-Ccc
Confidence 3489999999999999999999999999999999999999999999999998889999999999999999999987 789
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCC--cchhhcccCCCCC
Q 008352 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD--TTFQEITADTGVE 483 (569)
Q Consensus 406 lP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~--~~l~d~i~D~~~~ 483 (569)
+|.++.....+++++...+.+..++.|+.++++..+|++.+.+...+.......|++.++.++++ .++.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~------ 178 (243)
T 1l0o_C 105 VSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITLLDQI------ 178 (243)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccchhhcc------
Confidence 99999999999999999999999999999999999999999998887766667788776543322 2223322
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 484 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 484 ~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
|++.+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||.++|++++.+|+++||
T Consensus 179 -~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 179 -ADADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ----------------------------------------------------------------------
T ss_pred -CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 2223344456678899999999999999999998 8999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.89 E-value=9.4e-23 Score=192.94 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=136.5
Q ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHH
Q 008352 316 CRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIR 394 (569)
Q Consensus 316 ~~~L~~~l~~G-~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~ 394 (569)
+.+|+..+..| ..|++.|+..|.+.|+++|+++.+ ..+.+|++||+++++|+++++|++.. .|.+|++.++++.+.
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 45566666555 599999999999999999999999 89999999999999999999999874 599999999999999
Q ss_pred HHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh
Q 008352 395 KAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ 474 (569)
Q Consensus 395 ~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~ 474 (569)
+++++..+..+. .++.. ... ..++.. ..
T Consensus 87 d~~R~~~~~~~~----------------------------~~~~~-----------~~~-----~~~~~~------~~-- 114 (194)
T 1or7_A 87 NYLVAQGRRPPS----------------------------SDVDA-----------IEA-----ENFESG------GA-- 114 (194)
T ss_dssp HHHHHHTTCCTH----------------------------HHHHH-----------HHH-----HSCCSS------CC--
T ss_pred HHHHHHhccCcc----------------------------ccccc-----------ccc-----cccccc------cc--
Confidence 999886532210 00000 000 000000 00
Q ss_pred hcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 475 EITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 475 d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.+. .+|++.+...+....|..+|..||+++|+||.++|+ +++|++|||+.||||..+|++++.||+++||+
T Consensus 115 --~~~~--~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 115 --LKEI--SNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp ------------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred --ccCC--CChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 0010 123333333455667889999999999999999998 89999999999999999999999999999999
Q ss_pred Hhhc
Q 008352 555 SLGG 558 (569)
Q Consensus 555 ~l~~ 558 (569)
.+..
T Consensus 187 ~l~~ 190 (194)
T 1or7_A 187 KVQP 190 (194)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 8753
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=2.7e-23 Score=195.39 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=144.0
Q ss_pred CCHHHHHHH-Hhcc-HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHH
Q 008352 314 LSCRDLKSE-LHSG-NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391 (569)
Q Consensus 314 ~~~~~L~~~-l~~G-~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRq 391 (569)
+++..|+.. +..| ..|++.|+..|.+.|+.+|+++.++..+.+|++||+++.+|+++++|++..| .|.+|++.++++
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 556777777 6555 5999999999999999999999999899999999999999999999999875 799999999999
Q ss_pred HHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCc
Q 008352 392 TIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDT 471 (569)
Q Consensus 392 aI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~ 471 (569)
.+.+++++..+... ++. ..
T Consensus 90 ~~~d~~R~~~~~~~-------------------------------------------------------~~~------~~ 108 (184)
T 2q1z_A 90 RRIDGLRKDRQPEP-------------------------------------------------------EDL------FW 108 (184)
T ss_dssp SCCTTTCSSSCCCC-------------------------------------------------------CCC------CC
T ss_pred HHHHHHHhhccccc-------------------------------------------------------ccc------cc
Confidence 99888876542110 000 00
Q ss_pred chhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 472 TFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 472 ~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
..+ ...+|++.+...+....|..+|..||+++|+||.++|. +++|++|||+.||||..+|++++.||+++
T Consensus 109 -----~~~-~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 109 -----GPD-SEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPLGTIKSRIRLALDR 178 (184)
T ss_dssp -----CSS-CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCCHHHHHHHHHHHHH
T ss_pred -----cCC-CCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 011 12357777777778888999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHh
Q 008352 552 LKQSL 556 (569)
Q Consensus 552 LR~~l 556 (569)
||+.+
T Consensus 179 Lr~~l 183 (184)
T 2q1z_A 179 LRQHM 183 (184)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 99875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.86 E-value=2.9e-21 Score=176.71 Aligned_cols=155 Identities=15% Similarity=0.189 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCC
Q 008352 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHS 431 (569)
Q Consensus 352 g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~ 431 (569)
|.+++|++|||++++|+++.+||+.+ .+|.||+++++++.+.++++++.+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 57899999999999999999999987 7899999999999999999986533222110
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchh----hcccCCCCCChhHHHHHHHHHHHHHHHHh-cCC
Q 008352 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQ----EITADTGVEIPDISVQKQLMRQHVRNLLT-LLN 506 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~----d~i~D~~~~~pee~l~~~el~e~L~~aL~-~L~ 506 (569)
..++.+.+..++....+. +.+.+ ...+|++.+...+....|..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYKS-SESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhcc-cCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 011111111111111111 11111 22367777888888889999999 999
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 560 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 560 (569)
+++|.||. +|. +|+|++|||+.||||..+|++++.||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 676 89999999999999999999999999999999987543
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.71 E-value=1.8e-19 Score=167.34 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcccceecchh
Q 008352 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 409 (569)
Q Consensus 330 re~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IRlP~~ 409 (569)
++.|+..|.+.|+.+|.++.++..+++|++||+|+++|+++++|++.. .|.+|++..++|.+.+++++..
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~-------- 72 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGE-------- 72 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTS--------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccC--------
Confidence 567899999999999999999989999999999999999999999763 6999999999999999886531
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhcccCCCCCChhHHH
Q 008352 410 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISV 489 (569)
Q Consensus 410 ~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~i~D~~~~~pee~l 489 (569)
.+ +.+. + .
T Consensus 73 ---------------------~~-----------------------------~~~~--e-----------~--------- 80 (157)
T 2lfw_A 73 ---------------------AQ-----------------------------TSQS--D-----------A--------- 80 (157)
T ss_dssp ---------------------CC-----------------------------CCCC--S-----------C---------
T ss_pred ---------------------cc-----------------------------cCCc--c-----------h---------
Confidence 00 0000 0 0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008352 490 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 560 (569)
Q Consensus 490 ~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 560 (569)
.+....|..+|..||+++|+||.|+|. +|+|++|||+.||||..+|++.+.||+++||+.+....
T Consensus 81 --~~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 81 --EGTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp --SSSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 001124667889999999999999998 89999999999999999999999999999999886543
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.64 E-value=2.7e-16 Score=163.85 Aligned_cols=85 Identities=41% Similarity=0.902 Sum_probs=77.2
Q ss_pred HHHHHHHhcc-H---HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHH
Q 008352 317 RDLKSELHSG-N---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (569)
Q Consensus 317 ~~L~~~l~~G-~---~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqa 392 (569)
..|...+..| . .|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|++.+|++|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 3455555555 4 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 008352 393 IRKAIFQHS 401 (569)
Q Consensus 393 I~~~Ir~~~ 401 (569)
|.++++++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999999865
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.56 E-value=2.2e-15 Score=153.39 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhccccee
Q 008352 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIR 405 (569)
Q Consensus 326 G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IR 405 (569)
+..+|+.|+..|.+.++.+|++|.++..+.+|++||.|+.+|+..++|++. ..|.+|++.+++|.+.+++++..
T Consensus 19 ~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~---- 92 (286)
T 3n0r_A 19 SEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLE---- 92 (286)
T ss_dssp -CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC-------
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccc----
Confidence 347999999999999999999999999999999999999999999999975 46999999999998877664210
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhcccCCCCCCh
Q 008352 406 LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIP 485 (569)
Q Consensus 406 lP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~i~D~~~~~p 485 (569)
. . ... +. .
T Consensus 93 -------------------------~--------------------------------~--~~~---------~~---~- 100 (286)
T 3n0r_A 93 -------------------------V--------------------------------G--HDQ---------GL---H- 100 (286)
T ss_dssp ----------------------------------------------------------C--CCC---------CC---C-
T ss_pred -------------------------c--------------------------------C--CCc---------cc---c-
Confidence 0 0 000 00 0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 486 DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 486 ee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
....|..+|+.||+++|+||.|+|. +++|++|||+.+|+|..+|+....+|+++|+..+.
T Consensus 101 --------~~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 101 --------AGDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp --------TTSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred --------hHHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 0124788999999999999999998 99999999999999999999999999999997654
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.53 E-value=2.8e-14 Score=124.11 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 008352 488 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 567 (569)
Q Consensus 488 ~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yldl 567 (569)
.+...++...|..+|+.||++||+||.+|||++|++++|++|||+.||||++||++++.+|+++||..+....++.|+..
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~~ 82 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSSG 82 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999988999999999999999999999999999999999999999999753
No 14
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.33 E-value=1.8e-12 Score=109.37 Aligned_cols=72 Identities=38% Similarity=0.713 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 008352 496 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 567 (569)
Q Consensus 496 e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yldl 567 (569)
..|..+|+.||+++|+||.++|+|++++++|++|||+.||||+++|++++.+|+++||..+....+..|+..
T Consensus 10 ~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 367889999999999999999999988999999999999999999999999999999999988888888754
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.30 E-value=9.6e-13 Score=107.11 Aligned_cols=68 Identities=32% Similarity=0.627 Sum_probs=55.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHhhcCchhhhh
Q 008352 498 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK-QSLGGKASYGYA 565 (569)
Q Consensus 498 L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR-~~l~~~~L~~yl 565 (569)
|..+|+.||++||+||.++|+|+|++++|++|||+.||+|.++|++++.+|+++|| ..+....++.|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999998889999999999999999999999999999999 888888888775
No 16
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.29 E-value=1.3e-11 Score=104.80 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCc
Q 008352 482 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 560 (569)
Q Consensus 482 ~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~ 560 (569)
..+|++.+...+....|..+|..||+++|+||.|+|. +++|++|||+.||||..+|++++.||+++||+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3478888999999999999999999999999999998 89999999999999999999999999999999987654
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.26 E-value=2.1e-12 Score=103.71 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCchhhhhh
Q 008352 501 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 566 (569)
Q Consensus 501 aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L~~yld 566 (569)
+|+.||++||+||.++|||++.+++|++|||+.||+|.++|++++.+|++|||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999887799999999999999999999999999999999998888887764
No 18
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=6.4e-10 Score=88.52 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008352 494 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 561 (569)
Q Consensus 494 l~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 561 (569)
....|..+|+.||++++.||.++|. +++|++|||+.+|+|+.+|+++.++|+++||..+....+
T Consensus 5 ~~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 5 DLVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4557888999999999999999998 899999999999999999999999999999998876543
No 19
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.96 E-value=1.5e-09 Score=94.37 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHH
Q 008352 318 DLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396 (569)
Q Consensus 318 ~L~~~l~~-G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~ 396 (569)
.|+..+.. +..|++.|+..|.+.|+.+|.++ ++..+.+|++||+|+.+|+.+.+|++. ..|.+|++..++|.+.++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 34444444 45999999999999999999999 888899999999999999999999974 369999999999999999
Q ss_pred HHhccc
Q 008352 397 IFQHSR 402 (569)
Q Consensus 397 Ir~~~r 402 (569)
++++.+
T Consensus 90 ~R~~~~ 95 (112)
T 2o7g_A 90 IRHVRS 95 (112)
T ss_dssp TC----
T ss_pred HHHhhc
Confidence 987654
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.86 E-value=2.7e-09 Score=88.53 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=67.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcc
Q 008352 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 401 (569)
Q Consensus 325 ~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~ 401 (569)
++..+++.|+..|.+.++.+|.++.++..+.+|++||+++.+|+.+++|++. ..|.+|++.++++.+.++++++.
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 4458999999999999999999999999999999999999999999999975 47999999999999999988654
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.84 E-value=1.2e-08 Score=90.30 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008352 489 VQKQLMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 561 (569)
Q Consensus 489 l~~~el~e~L~~aL-~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 561 (569)
++..+....+..++ ..||+++|+||.++|. +++|++|||+.||+|..+|+.+..||+++||..+...++
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455566788999 9999999999999998 899999999999999999999999999999999876554
No 22
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.73 E-value=1e-11 Score=124.23 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=109.5
Q ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHH----HHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHH
Q 008352 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (569)
Q Consensus 318 ~L~~~l~~G~-~Are~LI~~nlrLV~sIArry~~~g~~~EDLI----QEG~IGLirAiekFDp~kG~rFSTYA~~wIRqa 392 (569)
.|..+++.++ .+++.+...|.+++..+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 4556666555 78999999999999999988777777788886 999999999999998754 5888877655543
Q ss_pred HHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcc
Q 008352 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTT 472 (569)
Q Consensus 393 I~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~ 472 (569)
+.++.+... +...+.....
T Consensus 164 ~~d~~r~~~-----------------------------------------------------------~~~~~~~~~~-- 182 (258)
T 3clo_A 164 SADQRPEQG-----------------------------------------------------------IYATITQMER-- 182 (258)
T ss_dssp CSCCCCCSS-----------------------------------------------------------CCCEEEETTT--
T ss_pred HcchhhhhH-----------------------------------------------------------HHHHHHhhcc--
Confidence 322211000 0000000000
Q ss_pred hhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008352 473 FQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 552 (569)
Q Consensus 473 l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKL 552 (569)
.+... .. .+..++..||+++|+||.|++ +|+|.+|||+.||||..||+.+..||++||
T Consensus 183 -~~~~~-----~~-----------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 183 -GEVET-----LS-----------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp -TEEEE-----CC-----------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred -ccccc-----ch-----------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 00000 00 145567899999999999984 799999999999999999999999999999
Q ss_pred HHH
Q 008352 553 KQS 555 (569)
Q Consensus 553 R~~ 555 (569)
|..
T Consensus 241 ~~~ 243 (258)
T 3clo_A 241 SVG 243 (258)
T ss_dssp TCS
T ss_pred cCC
Confidence 864
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.69 E-value=2.5e-08 Score=88.35 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=57.4
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcCch
Q 008352 495 RQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 561 (569)
Q Consensus 495 ~e~L~~aL-~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~~L 561 (569)
...+..++ ..||+++++||.++|. +|+|++|||+.+|||+.+|+....+|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44677888 8999999999999998 899999999999999999999999999999998876554
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.52 E-value=3.6e-08 Score=83.31 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 492 QLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 492 ~el~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
......+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+.+..++++||+..
T Consensus 17 ~~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 17 GSHMKKRAELYEMLTEREMEILLLI-A----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp --------CTGGGCCSHHHHHHHHH-H----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3445578889999999999999995 4 799999999999999999999999999999753
No 25
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.49 E-value=1.8e-07 Score=76.20 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 496 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 496 e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
..+..++..|+++|++||.++ . +++|.+|||+.||+|..+|++...++++||+.
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAV-V----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH-T----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 357788999999999999995 4 79999999999999999999999999999985
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.47 E-value=1.9e-07 Score=79.79 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 494 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 494 l~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
....|..++..|+++|++||.++ . +|+|.+|||+.||||..+|+..+.++++||+..-
T Consensus 17 ~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 17 RGSHMQDPLSGLTDQERTLLGLL-S----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp ----------CCCHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 34567889999999999999997 4 7999999999999999999999999999998643
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.46 E-value=1.2e-07 Score=82.53 Aligned_cols=64 Identities=23% Similarity=0.206 Sum_probs=54.7
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHhcccC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 493 LMRQHVRNLL-TLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 493 el~e~L~~aL-~~L~~rER~VL~LRygL~d---~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
...+.+..++ ..|+++|+.+|.+|||+.+ +.++|++|||+.+|+|+.+|.++ +|+|++|...+.
T Consensus 23 ~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 23 YQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 3344566777 6799999999999999975 45699999999999999999999 999999987653
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.35 E-value=3e-07 Score=76.44 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 497 HVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 497 ~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
.+..++..|+++|++||.++ . +|+|.+|||+.||||..+|+....++++||+...
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLI-A----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35677899999999999995 4 7899999999999999999999999999998643
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.19 E-value=1.4e-06 Score=69.68 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 498 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 498 L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+...+..|+++|++||.+. . +++|.+|||+.||+|..+|++...++++||+..
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-V----QDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCHHHHHHHHHH-H----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4456788999999999994 4 789999999999999999999999999999753
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=97.97 E-value=1e-05 Score=68.62 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=43.1
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 500 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 500 ~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
.....|+++|++||.+.+ +|+|.+|||+.||||..||+....++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 346789999999999987 6999999999999999999999999999985
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.91 E-value=7.9e-06 Score=63.12 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
++|++|+.+ +. +|+|.+|||+.||+|..+|+....++++||+.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 479999999 55 89999999999999999999999999999975
No 32
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.86 E-value=1.9e-05 Score=68.27 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
..|+++|++||.+.+ +|+|.+|||+.||||..+|+....++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999965 69999999999999999999999999999953
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.46 E-value=0.00016 Score=70.69 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+++|++||.+.+ +|+|.+|||++||||..||+....++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999964 79999999999999999999999999999953
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.45 E-value=0.00017 Score=70.54 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+++|++||.+.+ +|+|.+|||++||||..||+..+.++++||.-
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999964 79999999999999999999999999999953
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.28 E-value=0.00028 Score=69.32 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=43.0
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
..|+++|++|+.+.. +|+|.+|||+.||||..||+....++++||.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 469999999999975 7999999999999999999999999999985
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.17 E-value=0.00041 Score=69.52 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+++|++||.+.. +|+|.+|||++||||..||+..+.++++||.-
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999985 79999999999999999999999999999953
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.90 E-value=0.0013 Score=47.33 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++..|...|. +++|..|||+.||||+.+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 478888866666665 7899999999999999999987654
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.53 E-value=0.005 Score=53.39 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
.+++.-..|-.++|. +|+|..|||+.||||+.+|.+++.+|...+.
T Consensus 18 ~~~~~~~~~A~lyYv----~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 678888899999998 9999999999999999999999999998864
No 39
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.47 E-value=0.0059 Score=56.93 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 498 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 498 L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
+...+..|+++|++|+.+.. +++|.+|||+.+|+|..||+....++++||.
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34456689999999998864 6899999999999999999999999999995
No 40
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.30 E-value=0.0024 Score=48.02 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+++..+.|+.+ +. +++|..|||+.||||+.+|+.++.+|
T Consensus 17 ~~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34455666666 44 68999999999999999999987654
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.16 E-value=0.0084 Score=56.27 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=42.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
..|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999998876 6899999999999999999999999999995
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=95.87 E-value=0.011 Score=56.37 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=42.2
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
..|+++|++|+.+-. +++|.+|||+.+++|..||+....+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998865 6799999999999999999999999999984
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.15 E-value=0.018 Score=54.67 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
...|+++|++|+.+.. +++|.+|||+.+++|..||+....+.++||.
T Consensus 157 ~~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 157 YAKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HHTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3469999999999854 6899999999999999999999999999984
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.92 E-value=0.066 Score=51.35 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 494 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 494 l~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
........+..|++++++|+.+.. .+++.++||..||+|..+|+....++++||.
T Consensus 188 ~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 188 RRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 345667889999999999999876 5899999999999999999999999999985
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.30 E-value=0.011 Score=66.14 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=13.4
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHH
Q 008352 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286 (569)
Q Consensus 253 ~~d~l~~yl~~~~~~~lLT~eEE~eL~~~iq~~~ 286 (569)
.+||+++||++||+.||||+|+|++||++|..+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 6799999999999999999999999999998743
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.43 E-value=0.087 Score=43.00 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.++.||.+-.-...|++.|..|||+.+|||+.+|++++.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~ 53 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 53 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4456777665554445689999999999999999886544
No 47
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.22 E-value=0.043 Score=39.63 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 510 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 510 R~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+.|+.+ +. ++.|..+||+.+|||+.+|..++.+
T Consensus 12 ~~i~~l-~~----~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-LE----KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HH----TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HH----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 345555 43 5699999999999999999987643
No 48
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.03 E-value=0.1 Score=49.21 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|.+||.+-.- +.|+.+|.+|||+.+ ++|..||+....+.++||..
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 599999999987653 334569999999999 99999999999999999963
No 49
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.03 E-value=0.081 Score=49.63 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG---LSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG---ISrerVRqie~RALkKLR~ 554 (569)
.|+++|++|+.+-.- +.|+.+|.+|||+.++ +|..||+....+.++||..
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 599999999987553 2345699999999999 9999999999999999963
No 50
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.85 E-value=0.15 Score=42.11 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.++.||.+......|+..|..|||+.||||+.+|++ +|.+|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~----~L~~Le~ 53 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINR----VLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3456666655544445789999999999999988875 5566654
No 51
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=92.70 E-value=0.11 Score=49.53 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|.+||.+-.- +.|..+|.+|||+.+ ++|..||+....+.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 599999999987653 334569999999999 99999999999999999963
No 52
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=91.96 E-value=0.12 Score=48.47 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 554 (569)
.|+++|++|+.+-.- +.|..+|.+|||+.++ +|..||+....+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 599999999987652 2235599999999998 9999999999999999964
No 53
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.72 E-value=0.032 Score=55.35 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 008352 498 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRALYRLK 553 (569)
Q Consensus 498 L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG--ISrerVRqie~RALkKLR 553 (569)
+...+..|++.++. |...|| .+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~-L~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQ-LQQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566778777777 445666 7899999999999 999999999999988763
No 54
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=91.55 E-value=0.11 Score=48.85 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 554 (569)
.|+++|.+|+.+-.- +.|..+|.+|||+.++ +|..+|+....+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 599999999987653 2334599999999998 9999999999999999974
No 55
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=91.21 E-value=0.19 Score=44.66 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQ 543 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRq 543 (569)
..|..| .+|+.+.. +|+|+.|||+.+|+|..||..
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR 94 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR 94 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH
Confidence 456666 67777755 579999999999999999976
No 56
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=90.97 E-value=0.26 Score=43.05 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++..|...+. .|+|..+||+.||||+.+|+....+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777766665555 6899999999999999999988765
No 57
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=90.78 E-value=0.35 Score=46.46 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|.+||.+... +.|+..|.+||++.+ +++..+|+....+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 599999999988653 446889999999999 78999999999999999964
No 58
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.74 E-value=0.22 Score=47.82 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 509 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 509 ER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
-.++..+ |. .|+|..|||+.||||+.+|.+++..|.
T Consensus 14 G~ria~~-y~----~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 14 GLRLMRM-KN----DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHH-HH----TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHH-HH----cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3445555 65 789999999999999999999988775
No 59
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.74 E-value=0.2 Score=48.56 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGN-----IFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe-----~LGISrerVRqie~RALkKLR~ 554 (569)
.|+++|++||.+..- +.|+.+|.+|||+ .++++..+|+....+.++||..
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 599999999998763 3356799999999 5888999999999999999864
No 60
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.42 E-value=0.42 Score=40.62 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.+++.+|.-|...+. .++|..+||+.||||+.+|+.+..+..
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555554444444 679999999999999999999887643
No 61
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=89.93 E-value=0.099 Score=49.12 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=42.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG-----ISrerVRqie~RALkKLR~ 554 (569)
.|+++|++||.+-.- +.|+.+|.+|||+.++ +|..+|+....+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 599999999987652 1223499999999999 9999999999999999974
No 62
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.57 E-value=0.65 Score=41.39 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.++..+|.-|...+. .++|..+||+.||||+.+|+.++.+..
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355555554444444 679999999999999999999987754
No 63
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=88.55 E-value=0.9 Score=37.43 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=33.0
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
...|++.+..+|...+. .+.+.|..|||+.+|+|+.+|++++.
T Consensus 16 ~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45789888887755441 12679999999999999999986543
No 64
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.51 E-value=0.48 Score=37.28 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++..+.||.+--- ++.+.|..|||+.+|+|+.+|.+ .++.|++
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~----~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQ----VLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34445556654321 23679999999999999888875 4555654
No 65
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.40 E-value=0.35 Score=40.20 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+.|..|||+.||||+.+|++++.+
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 499999999999999999987654
No 66
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.15 E-value=0.5 Score=44.60 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHhcc--cCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 504 ~L~~rER~VL~LRygL--~d~e~~Tl~EIAe~LGISrerVRqie 545 (569)
.|+++|++|+.+-..+ ..|.+.|.+|||+.||+|..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875432 23468999999999999988876543
No 67
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=87.36 E-value=0.56 Score=47.61 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.6
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 511 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 511 ~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
.|..++|. +++|.+|||+.||||+.|||+.+..+.+
T Consensus 12 ~ia~l~~~----~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYYE----QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46777776 7899999999999999999988776644
No 68
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.35 E-value=1.1 Score=39.09 Aligned_cols=49 Identities=8% Similarity=0.137 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 500 NLLTLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 500 ~aL~~L~~rER~VL~LRygL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
...-.|++.+..|+..-.. .+.+ .|..|||+.+|+++.+|.. ++++|.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r----~L~~L~~ 68 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQR----SVKKLHE 68 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3456799999999876553 2234 8999999999999999984 5555543
No 69
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=86.92 E-value=1 Score=36.91 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.+.|..+||+.||||+.+|+++..+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 70
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=86.78 E-value=1.6 Score=37.70 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCC---CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 496 QHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 496 e~L~~aL~~L~~rER~VL~LRygL~d~---e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..|...+..|++.|+.|..+... .. ..+|..|||+..|+|..+|-+..++
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILA--HPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHH--CHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHH--ChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45777788999999999876542 11 3699999999999999999876643
No 71
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.77 E-value=3 Score=34.34 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 506 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 506 ~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
++....||.+- . .++|..|||+.+|+|+.+|++.+.
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45566676655 3 579999999999999999986543
No 72
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.24 E-value=1.3 Score=39.56 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..|++.++.||.+-.. +...|..|||+.+|+|+.+|+.++++
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3488999988875432 25799999999999999999865443
No 73
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.21 E-value=1.7 Score=40.40 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 494 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 494 l~e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+...+...+..|++.|..||..-+... +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344556667779999999998766321 25899999999999999999865544
No 74
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=85.81 E-value=1.3 Score=39.48 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|+.++++
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 378888888876432 25799999999999999999865543
No 75
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=85.02 E-value=1.3 Score=36.14 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=23.7
Q ss_pred cccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 518 GIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 518 gL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+|..|+..|..+||+.||+++..|. |+|.+|.+
T Consensus 23 ~L~~~~~~Ta~~IAkkLg~sK~~vN----r~LY~L~k 55 (75)
T 1sfu_A 23 SLNTNDYTTAISLSNRLKINKKKIN----QQLYKLQK 55 (75)
T ss_dssp TSCTTCEECHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred hCCCCcchHHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 3444466899999999999987765 45555543
No 76
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.96 E-value=1.7 Score=38.87 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++++
T Consensus 4 ~ld~~~~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875432 2 4799999999999999999866544
No 77
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.73 E-value=1.6 Score=37.97 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..||..-+. .+.|..|||+.+|+|+.+|++++.+
T Consensus 35 ~lt~~~~~iL~~l~~----~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE----ESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHTT----CCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 467888888776553 2399999999999999999865544
No 78
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=84.61 E-value=1.8 Score=38.76 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+-.. +...|..|||+.+|+|+.+|++++++
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875432 25789999999999999999876544
No 79
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.49 E-value=2.9 Score=35.14 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.4
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 497 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 497 ~L~~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.+..++..|. +....||.+-.. .++|..|||+.+|+|+.+|++.++
T Consensus 15 ~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 15 RVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445555555 445566665432 578999999999999999986544
No 80
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=84.40 E-value=1.5 Score=38.43 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
|++.++.||..-.. +...|..|||+.+|+|+.+|++.+++
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 67777888875321 25689999999999999999865443
No 81
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.34 E-value=1.4 Score=38.43 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL-~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
..|++.+..+|..-+.+ ..+.+.|..+||+.+|+++.+|++++++-
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 46888888877765543 23468999999999999999998655543
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=84.04 E-value=1.8 Score=32.70 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=25.8
Q ss_pred CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 524 PKS----LSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 524 ~~T----l~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+.| ..+||..+||++.+|++...+ ...++..+
T Consensus 21 g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 21 DNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 567 999999999999999999764 45555544
No 83
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.00 E-value=4 Score=35.01 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=38.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 495 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 495 ~e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
...+...+ ..|++.+..||..-+.- ++.+.|..|||+.+|+++.+|..++.+
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~~-~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 20 STRFDIFAKKYDLTGTQMTIIDYLSRN-KNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-TTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 34455555 35899999988776642 223799999999999999999865544
No 84
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=83.91 E-value=1.7 Score=39.46 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=32.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--N-GRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876432 2 4689999999999999999876544
No 85
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=83.54 E-value=1.7 Score=39.64 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
|++.++.||.+--. +...|..|||+.+|+|+.+|+.++++
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777888876432 25789999999999999999976544
No 86
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=83.50 E-value=1.9 Score=38.59 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+-.. + ...|..|||+.+|+|+.+|++++++
T Consensus 4 ~ld~~~~~iL~~L~~--~-~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 4 ALDDIDRILVRELAA--D-GRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888876432 2 4799999999999999999866543
No 87
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=83.37 E-value=3.3 Score=35.78 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 497 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 497 ~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.+...+ ..|++.+..||..-+ +.+.|..|||+.+|+|+.+|..++.+-
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 25 ELNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHHH
Confidence 344444 358999999887765 268999999999999999998655443
No 88
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=83.21 E-value=1.8 Score=38.50 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
|++.++.||.+-- .+...|..|||+.+|+|+.+|++++++
T Consensus 1 ld~~~~~il~~L~---~~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQ---YNAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHT---TCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHH---HcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4677777876543 225799999999999999999865443
No 89
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.93 E-value=3.9 Score=35.18 Aligned_cols=54 Identities=9% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+. .|++.+..||..-+. .++++.|..|||+.+|+++.+|.+++.+-
T Consensus 16 ~~~~~~~~~~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 16 MKQKADQKLEQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 3445555554 589999999887664 22258999999999999999998665543
No 90
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.87 E-value=2.7 Score=36.57 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHHHHhc----CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~~----L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+.. |++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34456666654 99999998887654 247999999999999999998766543
No 91
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=82.49 E-value=1.5 Score=47.37 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=61.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER 510 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER 510 (569)
..|..+||+.+|+|...|+.-+..-+..+.-...+.....+- .+......... .....+.+.+|
T Consensus 32 ~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy---~L~~~~~~~~~-------------~~~~~~~~~eR 95 (485)
T 3sqn_A 32 QLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGI---RLRNQGNAQTN-------------ELWSLFLPQSI 95 (485)
T ss_dssp SCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEE---EEEEC---CTH-------------HHHHHHGGGSH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEE---EEecCcHHHHH-------------HHHHhcCHHHH
Confidence 578999999999999999987764433321000111000010 11111000110 01122345555
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 511 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 511 ~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
....+.+.|.. ++.|+.++|+.++||+.||.+-+++..+.|++
T Consensus 96 ~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 96 SIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp HHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 54444444443 58999999999999999999877777666654
No 92
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.48 E-value=1.2 Score=37.75 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+.+....||...+- .|+..|..|||+.+|||+.+|+ +++++|.+
T Consensus 15 ~~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~ 59 (110)
T 1q1h_A 15 LLGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVR----KKLNLLEE 59 (110)
T ss_dssp TSCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HcChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345666677765532 3467999999999999999998 56666665
No 93
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.48 E-value=2.2 Score=35.31 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=29.1
Q ss_pred CCHHHHH-HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 505 LNPKERC-IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 505 L~~rER~-VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.++..+. |+.+... + .+.|..+||..+|||+.+|+++..+.
T Consensus 6 ys~e~k~~~v~~~~~--~-~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYEN--S-DGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTT--G-GGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--c-CCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 4444432 1 26899999999999999999987653
No 94
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.37 E-value=1.8 Score=35.42 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..||..-.. +.+.|..|||+.+|+++.+|++++.+
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578888888876532 25799999999999999999865544
No 95
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.30 E-value=0.73 Score=41.67 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++..+|.-|...+- .++|..+||+.||||+.+|+.++++
T Consensus 25 ~~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355555544444443 5799999999999999999998765
No 96
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=82.11 E-value=2 Score=37.36 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQ 543 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d--~e~~Tl~EIAe~LGISrerVRq 543 (569)
-+++.|+.-|..|+-+.. .+|+|+.||++.+|+|..||.+
T Consensus 36 L~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 36 VCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 366776665555443321 1579999999999999999975
No 97
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.07 E-value=4 Score=33.49 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 497 HVRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 497 ~L~~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+..++..|. +....||.+- .+ .+.|..|||+.+|+|+.+|++. +++|++
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L---~~-~~~~~~ela~~l~is~~tvs~~----L~~L~~ 62 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCML---HN-QELSVGELCAKLQLSQSALSQH----LAWLRR 62 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHT---TT-SCEEHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH---hc-CCCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 3445555554 4444555433 23 5899999999999999999754 455544
No 98
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.01 E-value=3.7 Score=34.02 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHhcCCH-HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008352 497 HVRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 497 ~L~~aL~~L~~-rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie 545 (569)
.+..++..|.. .-..||.+-. + .++|..|||+.+|+|+.+|++.+
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~~L 57 (102)
T 3pqk_A 12 EVANLLKTLSHPVRLMLVCTLV---E-GEFSVGELEQQIGIGQPTLSQQL 57 (102)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHH---T-CCBCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH---h-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 34455555554 4444544432 2 46999999999999999998644
No 99
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.90 E-value=2 Score=35.02 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 498 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 498 L~~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+..++..|. +.+..||.+-. .+.+.|..|||+.+|+|+.+|++.+.
T Consensus 14 ~~~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 14 AAALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 334444443 56666665432 34589999999999999999986554
No 100
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=81.42 E-value=2.3 Score=39.31 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.++.||.+--. + ...|..|||+.+|+|+.+|++++++
T Consensus 24 ~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--D-GKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588999988876432 2 4799999999999999999876543
No 101
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=81.41 E-value=4.1 Score=35.07 Aligned_cols=61 Identities=16% Similarity=0.222 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhcccCC---CCCCHHHHHHHhCCCHHHHHHHHHH----HHHHHHHHhh
Q 008352 495 RQHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLESR----ALYRLKQSLG 557 (569)
Q Consensus 495 ~e~L~~aL~~L~~rER~VL~LRygL~d~---e~~Tl~EIAe~LGISrerVRqie~R----ALkKLR~~l~ 557 (569)
...|...+..|++.|+.|..+.. ... ..+|..|||+..|+|..+|-+..++ ...-||..+.
T Consensus 5 ~~~I~~~~~~lt~~e~~ia~yil--~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 5 LYKIDNQYPYFTKNEKKIAQFIL--NYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHH--HCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH--hCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34677888999999999987543 221 4799999999999999999876654 3444554443
No 102
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.36 E-value=1.4 Score=37.26 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+|...|+.+... .+.|..+||+.+|||..||+..++.-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345556555443 34899999999999999999988753
No 103
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.26 E-value=4.4 Score=34.60 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+|+.+|..++.+
T Consensus 15 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 15 RVFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 334455553 589999888876553 26799999999999999999865544
No 104
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=80.71 E-value=2.5 Score=35.28 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=28.5
Q ss_pred CHHHHHHHH-HHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 506 NPKERCIVR-LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 506 ~~rER~VL~-LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+|....||. +.-. .+++..|||+.+|+|+.+|++.++.
T Consensus 26 ~~~Rl~IL~~l~~~----~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYKH----KALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC----CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 466666773 3222 4799999999999999999977654
No 105
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.61 E-value=3.3 Score=34.71 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=31.8
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 498 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 498 L~~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+..++..|. +....||.+-. + .+.|..|||+.+|+|+.+|++.+.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~---~-~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG---R-ADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH---H-SCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344455554 55556666432 2 4699999999999999999865543
No 106
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=80.44 E-value=3.9 Score=34.77 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHhc-CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 498 VRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 498 L~~aL~~-L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+..++.. .++.+..||.+-.. .+.|..|||+.+|+|+.+|.+.+++
T Consensus 22 ~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 22 VASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344433 34667777766543 4799999999999999999866544
No 107
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.38 E-value=2.5 Score=39.06 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..|++.++.||.+-.. + ...|..|||+.+|+|+.+|+.++++
T Consensus 13 ~~ld~~d~~IL~~L~~--~-~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--D-ARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH--C-TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888888876432 2 4689999999999999999866544
No 108
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=80.34 E-value=1.7 Score=35.82 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhccc-CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~-d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|+.++..||...+.-. +|.+.|..|||+.+|+++.+|.+++.+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47888888887655322 2344899999999999999998765543
No 109
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=80.29 E-value=6.2 Score=34.81 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=39.0
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 496 QHVRNLL---TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 496 e~L~~aL---~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
..+...+ -.|++.|..||..-+. +.+.|..|||+.+|+++.+|.+++.+-.+
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444 3699999998877654 25899999999999999999876655433
No 110
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.27 E-value=4.8 Score=34.49 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. +.+.|..|||+.+|+|+.+|.+.+.+-
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 799999988877543 247999999999999999998655443
No 111
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=80.03 E-value=4.8 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..|+.+.+ +.+ .+.|..|||+.+|+++.+|..++.+
T Consensus 23 gl~~~~~~il~~L~-~~~-~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSD-KPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHH-HCS-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 58999998887764 223 5799999999999999999865543
No 112
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=80.01 E-value=9.2 Score=32.89 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhcccCCCCCChhHHHHHHHHHHHHHHHHhcCCHHHH-
Q 008352 432 PDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKER- 510 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~L~~rER- 510 (569)
-+..+||+.+|++...|...+......- .. . .... | ..|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g-------~~---~------~~gr--~-----------------~~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYG-------TS---K------RAPR--R-----------------KALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTT-------CC---C------CCCC--C-----------------CSSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccC-------Cc---C------CCCC--C-----------------CcCCHHHHH
Confidence 4789999999999999999886432110 00 0 0000 0 01222222
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhC--CCHHHHHHHHHHH
Q 008352 511 CIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRA 548 (569)
Q Consensus 511 ~VL~LRygL~d~e~~Tl~EIAe~LG--ISrerVRqie~RA 548 (569)
.|+.+.-. ..+|..+|+..|| +|.++|++++.+.
T Consensus 68 ~i~~~~~~----~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 68 NVIRAASN----SCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp HHHHHHHH----CCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 23333111 4589999999999 8999999998763
No 113
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.72 E-value=3.6 Score=35.22 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 496 QHVRNLLT-LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 496 e~L~~aL~-~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+
T Consensus 26 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 26 ALFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 33444443 799999988877543 14799999999999999999865544
No 114
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=79.68 E-value=3.1 Score=39.42 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+++.++.||.+-. + .+.|..|||+.+|+|+.+|++++.+
T Consensus 18 ~d~~~~~IL~~L~---~-~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---N-KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6788888887654 2 4799999999999999999976544
No 115
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=79.27 E-value=2.1 Score=33.99 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999875
No 116
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=79.10 E-value=1.2 Score=41.99 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPK--SLSEVGNIFGLS-KERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~--Tl~EIAe~LGIS-rerVRqie~R 547 (569)
.|+++|+.++...--+-...++ |.+|+|+.+|++ +.+|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5788888776543221111356 999999999999 9999988763
No 117
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.08 E-value=4.8 Score=34.68 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
...+...+. .|++.+..||..-+. .+.+.|..|||+.+|+|+.+|..++.+
T Consensus 23 ~~~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 23 RAELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 334455553 588999888877632 236899999999999999999865544
No 118
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=78.85 E-value=5 Score=34.89 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=30.9
Q ss_pred HHHHhcC-CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 499 RNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 499 ~~aL~~L-~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..++..| ++....||.+-. + .+++..|||+.+|+|+.+|++.+++
T Consensus 37 ~~~~kaL~~~~rl~IL~~L~---~-~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 37 AEFFAVLADPNRLRLLSLLA---R-SELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp HHHHHHHCCHHHHHHHHHHT---T-CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334333 455556766543 2 4789999999999999999865543
No 119
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.43 E-value=6.9 Score=34.32 Aligned_cols=51 Identities=6% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 495 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 495 ~e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
...+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 29 ~~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 29 SAQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444 3589999888876543 357999999999999999998765543
No 120
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=78.29 E-value=5.9 Score=34.64 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+...+...+. .|++.|..||..-+. .+.+.|..|||+.+|+++.+|..++.+
T Consensus 24 ~~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 24 VLGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 3445555553 589999998876542 225689999999999999999876554
No 121
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=78.24 E-value=2.4 Score=32.08 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999998863
No 122
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=78.11 E-value=20 Score=29.68 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 419 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
++...+........+.++||+.+|+++..+..+...
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344445555666789999999999999999988663
No 123
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.09 E-value=3.4 Score=34.99 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHHHHhcCCH-HHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 498 VRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 498 L~~aL~~L~~-rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+..++..|.. ....||.+-. + .+.|..|||+.+|+|+.+|++.++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~---~-~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA---Q-GERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT---T-CCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH---c-CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3344444443 3345665433 2 578999999999999999986543
No 124
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.07 E-value=6.8 Score=34.30 Aligned_cols=50 Identities=14% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 497 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 497 ~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.+...+ ..|++.|..||..-+. +.+.|..|||+.+|+++.+|.+++.+-.
T Consensus 29 ~~~~~~~~~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 29 FYEKKLKQFGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444 3589999988877653 2678999999999999999987655543
No 125
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=78.00 E-value=1.8 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++|||+.+|||+.+|+++++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 48899999999999999999874
No 126
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.88 E-value=6.2 Score=34.26 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
...+...+. .|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-.
T Consensus 28 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 28 KQRGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 334555553 589999888876553 1479999999999999999987655433
No 127
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=77.86 E-value=4.8 Score=32.14 Aligned_cols=24 Identities=8% Similarity=0.122 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.+.|..|||+.+|+|+.+|++.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999999985544
No 128
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=77.68 E-value=2.6 Score=31.71 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998864
No 129
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=77.64 E-value=7.4 Score=33.24 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=39.5
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
+...+...+. .|++.+..||..-+. ..+.|..+||+.+|+++.+|.+++.+-.
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 3445556663 589999988877653 2478999999999999999987655433
No 130
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=77.63 E-value=6.1 Score=34.56 Aligned_cols=42 Identities=5% Similarity=0.040 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 38 ~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 38 GLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999988877654 246999999999999999998765543
No 131
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=77.54 E-value=6.4 Score=34.24 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..+++.+-.-++.. .++|.+|+|+.+|||+.+|++++..
T Consensus 69 ~~~~~~~l~~~R~~------~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKK------LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHH------TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHH------cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34566655555554 4699999999999999999999974
No 132
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=77.49 E-value=2.4 Score=31.58 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|+++++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 133
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=77.35 E-value=2.6 Score=33.73 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 134
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=77.25 E-value=4.9 Score=34.83 Aligned_cols=52 Identities=12% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|..++.+-
T Consensus 21 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 21 IIKKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3344555553 589999888876542 368999999999999999998665543
No 135
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=76.98 E-value=2.8 Score=32.01 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 136
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.83 E-value=4.9 Score=35.20 Aligned_cols=49 Identities=8% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 496 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 496 e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
..+...+ ..|++.|..||..-. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 25 ~~~~~~~~~~~lt~~q~~iL~~l~----~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 25 KLLKDLQTEYGISAEQSHVLNMLS----IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH----HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHH----cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444 358999988887652 268999999999999999998765543
No 137
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=76.76 E-value=4.4 Score=35.91 Aligned_cols=42 Identities=5% Similarity=-0.019 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. +.+.|..|||+.+|+++.+|..++.+-
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 589999998877653 257899999999999999998765543
No 138
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=76.64 E-value=3.3 Score=32.05 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999864
No 139
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=76.55 E-value=2.9 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5799999999999999999999863
No 140
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=76.35 E-value=2.1 Score=33.79 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 141
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.33 E-value=6.8 Score=33.88 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.|++.+..||..-+. +.+ |..|||+.+|+++.+|.+++.+-.
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHHH
Confidence 789999998887654 134 999999999999999987655443
No 142
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=76.30 E-value=2.6 Score=35.88 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=26.1
Q ss_pred HHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 513 VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 513 L~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
=.+|-- .++|++|+|+.+|||+.+|.++++-
T Consensus 42 r~~R~~----~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 42 KQARLN----RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHH----cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 344554 6899999999999999999999963
No 143
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=76.30 E-value=7.1 Score=33.97 Aligned_cols=48 Identities=8% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 497 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 497 ~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+...+ ..|++.+..||..-+. +.+.|..+||+.+|+++.+|..++.+
T Consensus 28 ~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 28 AVERGTLREGVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444 3589999888877653 24799999999999999999865544
No 144
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=76.13 E-value=3.5 Score=32.74 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999974
No 145
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=76.11 E-value=5.3 Score=35.38 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=39.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+...+...|. .|+..|-.||.+-+. ..+.+.|..|||+.+|+++.+|..++.+
T Consensus 20 l~~~~~~~l~~~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 20 LLGEVDAVVKPYGLTFARYEALVLLTF-SKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3445666664 589999999887653 2224689999999999999999876554
No 146
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=75.99 E-value=4.7 Score=35.29 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=37.0
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 497 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 497 ~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.+...+ ..|++.+..||..-+. +.+.|..+||+.+|+|+.+|.+++.+-
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 25 EMLESMEKQGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444 4799999988877653 247899999999999999998765443
No 147
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=75.81 E-value=2.8 Score=33.87 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 148
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=75.74 E-value=2.3 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|.++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4799999999999999999999864
No 149
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=75.59 E-value=2.5 Score=31.69 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999864
No 150
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=75.50 E-value=5.1 Score=34.69 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=38.1
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 23 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 23 HLFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 344455553 589999998877553 157999999999999999998665543
No 151
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=75.46 E-value=6.3 Score=34.47 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=38.4
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 495 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 495 ~e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
...+...+ ..|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+-.
T Consensus 33 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 33 HKLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 34444554 3588999888876553 2579999999999999999987665433
No 152
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=75.44 E-value=1.6 Score=35.00 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|+.++|+.+|||+.+|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999998765
No 153
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.42 E-value=5 Score=36.13 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 699999998876553 147999999999999999998765543
No 154
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=75.40 E-value=5.8 Score=34.28 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 506 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 506 ~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
++....||.+-.. + .++|..|||+.+|+|+.+|++.++.
T Consensus 41 ~~~rl~IL~~L~~--~-~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ--D-EELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH--S-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--C-CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4555567765441 1 5799999999999999999876543
No 155
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=75.39 E-value=3 Score=34.49 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999874
No 156
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.12 E-value=5.1 Score=35.49 Aligned_cols=52 Identities=2% Similarity=-0.022 Sum_probs=39.0
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+. .|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 35 ~~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 35 GQIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555554 589999888876553 257999999999999999998766553
No 157
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=74.97 E-value=3.3 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|+++++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 158
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.80 E-value=4.1 Score=30.63 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIF-----GLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~L-----GISrerVRqie~ 546 (569)
+...|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3689999999999 999999998776
No 159
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=74.76 E-value=4.8 Score=35.01 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 588888888876553 24899999999999999999876655433
No 160
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=74.72 E-value=2.6 Score=36.87 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHhcc-cCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL-~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
|++.+..+|...+.+ ..+.+.|..+||+.+|||+.+|+.++.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 444444444443322 1225799999999999999999975544
No 161
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=74.20 E-value=4.2 Score=35.86 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=38.4
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 496 QHVRNLLT---LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 496 e~L~~aL~---~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
..+...+. .|++.+..||..-+. .+.+.|..|||+.+|+++.+|.+++.+-.
T Consensus 33 ~~~~~~l~~~~~l~~~~~~iL~~L~~--~~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 33 GDLNRQLLDETGLSLAKFDAMAQLAR--NPDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHH--CTTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 33444443 699999999887642 22579999999999999999987665443
No 162
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.17 E-value=7.7 Score=34.48 Aligned_cols=52 Identities=4% Similarity=-0.021 Sum_probs=38.9
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+. .|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 31 ~~~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 31 ISKYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555553 699999998877553 257999999999999999998665543
No 163
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=73.99 E-value=8.1 Score=33.42 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.8
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 496 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 496 e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..+...+ ..|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 18 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444445 3589999988877543 14699999999999999999865554
No 164
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.97 E-value=29 Score=28.98 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 419 ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
++...+.......++.++||+.+|+++..+..+...
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333444445566789999999999999999988763
No 165
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=73.93 E-value=3.6 Score=32.28 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999873
No 166
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=73.81 E-value=4.3 Score=30.77 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFG--LSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LG--ISrerVRqie~R 547 (569)
.++|.+|+|+.+| +|+.+|.++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5799999999999 999999999874
No 167
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=73.74 E-value=2.4 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.+.|..|||+.||||..+||..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999999986554
No 168
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=73.66 E-value=2.5 Score=33.14 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4699999999999999999999864
No 169
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=73.44 E-value=4.7 Score=34.83 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=32.3
Q ss_pred cCCHHHH-HHHHHHhcccCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKER-CIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 504 ~L~~rER-~VL~LRygL~d~e~-~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
.++..++ +|+.+.+- .+ .+..+||+.|||++.+|+.+++..-..+.
T Consensus 7 ~~t~e~K~~iv~~~~~----~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE----NPDLRKGEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp CCCHHHHHHHHHHHHH----CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred eCCHHHHHHHHHHHHH----CCCCcHHHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 4666666 45555533 34 45569999999999999999877555443
No 170
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=73.37 E-value=2.9 Score=32.08 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999873
No 171
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=73.16 E-value=2.5 Score=36.00 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|..+ |..|||+.||||+.+|| +|+++|..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34555 99999999999999998 47777765
No 172
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=73.16 E-value=2.2 Score=33.71 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 173
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.12 E-value=4.6 Score=34.84 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. +.+.|..+||+.+|+|+.+|..++.+-
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 588988888877653 257999999999999999998655443
No 174
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=72.83 E-value=33 Score=28.31 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcC-CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 418 LEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 418 ~ka~~~l~~~~g-r~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.++...+.+... ..++.++||+.+|+++..+..+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 42 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555 689999999999999999988865
No 175
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=72.81 E-value=9.5 Score=33.85 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhcccC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 496 QHVRNLLT--LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 496 e~L~~aL~--~L~~rER~VL~LRygL~d--~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
..+...|. .|++.|-.||..-+...+ +.++|..|||+.+|+++.+|..++.+-
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34455553 589999988877664332 256899999999999999998776654
No 176
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=72.64 E-value=4.1 Score=32.46 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.9
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 548 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG----ISrerVRqie~RA 548 (569)
..|++.|..|+..-+. +.+.|..||++.++ +++.+|..++.+-
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4689999998887654 25799999999997 7999998665543
No 177
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=72.64 E-value=6.4 Score=33.90 Aligned_cols=51 Identities=4% Similarity=-0.048 Sum_probs=37.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
...+...+. .|++.+..||..-+. ..+.|..+||+.+|+|+.+|.+++.+-
T Consensus 15 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 15 DSISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 344555553 588888888876553 247899999999999999998655543
No 178
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=72.49 E-value=8.9 Score=39.00 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=41.3
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 496 QHVRNL--LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 496 e~L~~a--L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
+.|.+. |+.||+.-+++-.+|.- ..+.|++|+|+.++||++.|.-++.|..
T Consensus 233 ~~i~e~~Gl~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 233 ELIKENMGLENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp HHHHHHTCGGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 344444 47899999999999875 3789999999999999999988766543
No 179
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=72.41 E-value=4.9 Score=32.40 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 180
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=72.36 E-value=3.9 Score=33.36 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 6799999999999999999999864
No 181
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=72.17 E-value=17 Score=33.03 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999987 56667765
No 182
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=72.09 E-value=3.8 Score=35.53 Aligned_cols=42 Identities=10% Similarity=-0.014 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
|++.+..||..-+. .+.+.|..+||+.+|+++.+|.+++.+-
T Consensus 33 l~~~~~~iL~~l~~--~~~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 33 VQFSQLVVLGAIDR--LGGDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp HHHHHHHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 56667777665442 0258999999999999999998765543
No 183
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=71.90 E-value=3.7 Score=35.27 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 498 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 498 L~~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+..++..|. |.-..||.+-.. .+++..|||+.+|+|+.+|++.++
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~hL~ 53 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKHIH 53 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHHHH
Confidence 344455554 455556655442 578999999999999999986543
No 184
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=71.81 E-value=3.9 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 185
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=71.71 E-value=4.1 Score=34.10 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|.++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 186
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=71.55 E-value=2.7 Score=32.49 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 187
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=71.54 E-value=3.2 Score=34.74 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
..|++.|..|+..-+.. ++++.+.+||++.+|++..+|..++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 46788888888776632 236899999999999999998755443
No 188
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.26 E-value=9 Score=34.48 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=38.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+ ..|++.|..||..-+.. +.+.|..|||+.+|+++.+|..++.+-
T Consensus 38 ~~~~~~~~l~~~glt~~q~~vL~~L~~~--~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 38 WRALIDHRLKPLELTQTHWVTLHNIHQL--PPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHTTTTTCCHHHHHHHHHHHHS--CSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 344455555 35899998888765431 257999999999999999998765543
No 189
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=71.26 E-value=4 Score=33.76 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 190
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=70.98 E-value=19 Score=33.32 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHH-----Hhcc-----cCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRL-----RFGI-----EDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 502 L~~L~~rER~VL~L-----RygL-----~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+...+..+|-.-.+ ++|- .-.-+.|.++||..+|+|+++|. |++++|++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 45677777765444 4432 00146899999999999999987 56666765
No 191
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.85 E-value=4.8 Score=34.33 Aligned_cols=51 Identities=8% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
...+...+. .|++.+..||..-+. +.+.|..|||+.+|+++.+|.+++.+-
T Consensus 19 ~~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 19 QKNLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp HHHHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 334444443 589999988877653 257999999999999999998765543
No 192
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.80 E-value=4 Score=35.02 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 589998888876553 146899999999999999998665443
No 193
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=70.47 E-value=3.6 Score=36.34 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 34 pG~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34666 89999999999999998 67777765
No 194
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.04 E-value=5.7 Score=37.00 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+|.+.|+.+-. .++.+.|..|||+.+|||+.+|++.+.
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 55666666533 123569999999999999999997765
No 195
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=70.03 E-value=5 Score=34.64 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|++|+|+.+|||+.+|.+++.-
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999975
No 196
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=69.97 E-value=5.5 Score=35.70 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=36.8
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+...+...+. .|++.|..||..-+.. ++.+.|..|||+.+|+++.+|.+++.+-
T Consensus 31 ~~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 31 MKAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3444555553 5899999988766542 2368999999999999999998766543
No 197
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=69.76 E-value=3.9 Score=35.06 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 522 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 522 ~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
|+.+ |..++|+.||||+.+|| +|+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 4566 99999999999999998 57777765
No 198
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=69.73 E-value=70 Score=29.53 Aligned_cols=177 Identities=12% Similarity=0.115 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcccceecchhHHHH
Q 008352 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTL 413 (569)
Q Consensus 334 I~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~ 413 (569)
+..-..++..++.++ |++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.-+++
T Consensus 9 l~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr------------------- 64 (200)
T 1ais_B 9 LAFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACR------------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHH-------------------
Confidence 334455666666665 333 56667777777777666666776555544444432221
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCC-CCCCcchhhcccCCCCCChhHHHHHH
Q 008352 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVW-ADQDTTFQEITADTGVEIPDISVQKQ 492 (569)
Q Consensus 414 l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~-~d~~~~l~d~i~D~~~~~pee~l~~~ 492 (569)
..|.+.+..||+..+|++..++..........+.++-+.. .+...-+..+...-+. +++ +. +
T Consensus 65 -------------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l--~~~-v~-~ 127 (200)
T 1ais_B 65 -------------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGL--SEK-VR-R 127 (200)
T ss_dssp -------------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTC--CHH-HH-H
T ss_pred -------------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCC--CHH-HH-H
Confidence 1234778999999999999888775543222222222210 0011111111111111 111 11 1
Q ss_pred HHHHHHHHHHh-----cCCHHHHH--HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008352 493 LMRQHVRNLLT-----LLNPKERC--IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 552 (569)
Q Consensus 493 el~e~L~~aL~-----~L~~rER~--VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKL 552 (569)
.-...++.++. .-+|.--- +|.+--.+. |.+.|.+||++..|+|..+|+...+.-.+.|
T Consensus 128 ~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~-~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 128 RAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLE-GEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHh-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 12223333332 12232211 222211112 3789999999999999999997665555444
No 199
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.58 E-value=5 Score=35.32 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-.
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478888888876543 1479999999999999999987655433
No 200
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=69.57 E-value=9.7 Score=30.20 Aligned_cols=45 Identities=9% Similarity=0.041 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.++++...||.+-.. .+ .+.|..||++.+ +||..||.. .|+.|.+
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVyR----~L~~L~~ 64 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVYR----VLNQFDD 64 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHHH----HHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHHH----HHHHHHH
Confidence 478887778776542 22 579999999999 999999985 4455544
No 201
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=69.49 E-value=4.6 Score=35.22 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|.++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 202
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=69.15 E-value=5.2 Score=36.44 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=38.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
...+...+. .|++.+..||..-+.-+++.+.|..|||+.+|+++.+|.+++.+-
T Consensus 55 ~~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 110 (181)
T 2fbk_A 55 GREIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRL 110 (181)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555553 589999999887664222224899999999999999998765543
No 203
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=68.66 E-value=4.6 Score=32.74 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 506 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 506 ~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
++....||..-.. + .+.|..|||+.+|+|+.+|.+++++
T Consensus 15 ~~~~~~iL~~L~~--~-~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--R-RKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH--H-SEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh--c-CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4556666654431 1 4799999999999999999866543
No 204
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=68.66 E-value=4.8 Score=31.68 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.+ |..++|+.+|||+.+|+++++.-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 46 99999999999999999999863
No 205
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=68.66 E-value=5.4 Score=34.79 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 497 HVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 497 ~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+...+ ..|++.|..||..-+. .++.+.|..|||+.+|+++.+|..++.+
T Consensus 29 ~~~~~~~~~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 29 SADARLAELGLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 344444 3699999998887654 2225899999999999999999865554
No 206
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=68.31 E-value=4.3 Score=34.49 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 207
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=68.30 E-value=14 Score=32.83 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=37.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 495 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 495 ~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+..+...|. .|++.+-.||..-+. .+.+.+..|||+.+|+++.+|..++.+
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~--~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINR--LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHH--SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH--cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 444555553 589998888766542 236789999999999999999866554
No 208
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=68.22 E-value=4.6 Score=37.86 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+++ .+-.+|-. .++|++|+|+.+|||+.+|.++++-
T Consensus 90 ~s~~--~lk~lR~~----~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHE--MFGDWMHR----NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHH--HHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcH--HHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4444 34455554 6799999999999999999999874
No 209
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=67.51 E-value=4.2 Score=35.10 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=37.2
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 497 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 497 ~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+...+. .|++.|-.||..-+. .++.+.|..|||+.+|+++.+|.+++.+
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444443 599999998887664 2225789999999999999998865544
No 210
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.34 E-value=22 Score=32.14 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5899999999999999987 56666665
No 211
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=67.19 E-value=9.2 Score=33.91 Aligned_cols=50 Identities=4% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 496 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 496 e~L~~aL--~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
..+...+ ..|++.|..||..-+. ..+.|..|||+.+|+++.+|..++.+-
T Consensus 40 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 40 SELNQALASEKLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444 3699999988877653 147999999999999999998765543
No 212
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=67.18 E-value=5 Score=34.48 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+....||.+-. + .+.+..|||+.+|+|+.+|++.++
T Consensus 21 ~~r~~IL~~L~---~-~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 21 PTRCRILVALL---D-GVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp HHHHHHHHHHH---T-TCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHH---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 54556666533 2 468999999999999999986544
No 213
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=67.07 E-value=3.8 Score=38.78 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 510 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 510 R~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.|+.++- +|+|..+||+.||||+.+|.+++.
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555543 679999999999999999987654
No 214
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=67.02 E-value=4.7 Score=35.39 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|..+ |..++|+.||||+.+||. |++.|..
T Consensus 31 ~G~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 61 (126)
T 3by6_A 31 ANDQLPSVRETALQEKINPNTVAK----AYKELEA 61 (126)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 999999999999999984 6666754
No 215
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=66.96 E-value=10 Score=34.94 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHH--hcc---cCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLR--FGI---EDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 503 ~~L~~rER~VL~LR--ygL---~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
..+++..+.-..++ -++ ++++++|..|||+.+|||+.++.+..+
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 45666655544322 121 133479999999999999999999777
No 216
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=66.91 E-value=5.5 Score=33.80 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..|+|+.+|||+.+|.++++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999873
No 217
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=66.82 E-value=5.4 Score=33.63 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 008352 498 VRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 547 (569)
Q Consensus 498 L~~aL~~L~~rER~-VL~LRygL~d~e~~Tl~EIAe~L-GISrerVRqie~R 547 (569)
+..+++.|..+-+. ||..-+ + .+.++.||++.+ |+|+.+|.+.+++
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~---~-~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLT---H-GKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHT---T-CCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH---h-CCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 34566677777664 333322 2 579999999999 9999999865543
No 218
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=66.76 E-value=53 Score=27.06 Aligned_cols=34 Identities=12% Similarity=0.034 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 420 a~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
+...+........+.++||+.+|+++..+..+..
T Consensus 10 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 43 (108)
T 3oou_A 10 VLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQ 43 (108)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344455556688999999999999999988865
No 219
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=66.52 E-value=5.6 Score=35.61 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999974
No 220
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=66.32 E-value=15 Score=33.52 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 7899999999999999987 56667765
No 221
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=66.32 E-value=29 Score=31.80 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4799999999999999987 56667765
No 222
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=66.16 E-value=6.6 Score=34.29 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.2
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..+||+.||||+.+|| +|+..|..
T Consensus 33 ~g~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 33 GEDKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34566 69999999999999998 56777754
No 223
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.14 E-value=9.1 Score=31.07 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 429 NHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 429 gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|.+|+..|||+.+|++...|+.-+.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 5689999999999999999987765
No 224
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=66.09 E-value=26 Score=31.70 Aligned_cols=49 Identities=20% Similarity=0.134 Sum_probs=32.2
Q ss_pred HhcCCHHHHHHHHHHhccc-C---------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIE-D---------GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~-d---------~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+...+.++|-.-.+..... . .-+.|.++||..+|+|+++|. |++++|++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4566777775433322111 0 024899999999999999987 56666665
No 225
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=66.07 E-value=8.2 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
.|.++|... | .|.+..|+|..+|+|..+|++|.++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455666654 4 47899999999999999999999876654
No 226
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=66.01 E-value=6.4 Score=33.53 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||+.+|.+++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999884
No 227
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=65.96 E-value=4.8 Score=33.00 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHH-HHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKE-RVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISre-rVRqie~R 547 (569)
.+.|..+||+.||||.. .||+.+.+
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 47899999999999999 99976543
No 228
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=65.88 E-value=49 Score=27.90 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=24.2
Q ss_pred HHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 424 YIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 424 l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
+........+.++||+.+|+++..+..+..
T Consensus 16 i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 16 INNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp HHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334445578999999999999999988765
No 229
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=65.85 E-value=5.6 Score=36.71 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+|+|..+||+.||||+.+|.+++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 689999999999999999998764
No 230
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=65.76 E-value=6.5 Score=31.51 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie~R 547 (569)
+..++|+.||||+.+|++.+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999764
No 231
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=65.64 E-value=5.8 Score=33.40 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4789999999999999999999974
No 232
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=65.32 E-value=4.1 Score=34.19 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.|..+||..+|||..+|+++..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999987653
No 233
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=65.31 E-value=7.6 Score=29.32 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie 545 (569)
.+ |+.++|+.+|||+.+|.+++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999988
No 234
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=65.02 E-value=12 Score=36.77 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 501 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 501 aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.-..|++.+..||..-.. + .+.|..|||+.+|+++.+|.++++
T Consensus 146 ~~~~L~~~~~~IL~~L~~--~-~~~s~~eLA~~lglsksTv~r~L~ 188 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE--T-KGTGITELAKMLDKSEKTLINKIA 188 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH--H-TCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH--c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 345799999999986432 1 479999999999999999885544
No 235
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=64.74 E-value=7.1 Score=33.61 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.+..||..-+. +.+.|..|||+.+|+++.+|...+.+-
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 689999888877653 246899999999999999998655443
No 236
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=64.61 E-value=6.1 Score=32.28 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKER-VRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrer-VRqie~RA 548 (569)
.+.|..|||+.+|+++.+ |.+++.+-
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 479999999999999999 88666543
No 237
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=64.55 E-value=5.5 Score=31.98 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|.++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 238
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=64.53 E-value=6 Score=32.23 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 239
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=64.51 E-value=22 Score=32.81 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999987 56666765
No 240
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=64.33 E-value=7.7 Score=34.02 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhccc-CC-CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIE-DG-KPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~-d~-e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.|++.|-.|+..-+.+. .| ...|..+||+.+|+|..+|.+++.+-.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46677766655544332 22 347999999999999999987655443
No 241
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=64.13 E-value=7.1 Score=32.33 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999975
No 242
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=64.12 E-value=5.6 Score=32.60 Aligned_cols=42 Identities=7% Similarity=0.042 Sum_probs=31.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHH----HHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEV----GNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EI----Ae~LGISrerVRqie~RA 548 (569)
.|++.|..||..-+. ..+.|..|| |+.+|+++.+|.+++.+-
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 367777777766543 357999999 899999999998765543
No 243
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=63.85 E-value=8.4 Score=33.06 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+++|+.+|||+.+|.++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6799999999999999999999874
No 244
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=63.84 E-value=87 Score=33.36 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhCCCCcHHHHHHHcC--CCHHHHH
Q 008352 287 RLEKEKSKLQSQFGREPTLIEWAKAIG--LSCRDLK 320 (569)
Q Consensus 287 ~le~~~~~l~~~~g~~pt~~ewA~a~g--~~~~~L~ 320 (569)
++.+.+..+...+|++|+..+.|...| ++.+.+.
T Consensus 285 ~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~ 320 (438)
T 1l9z_H 285 KLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVE 320 (438)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHH
Confidence 344556677778999999999999988 8766554
No 245
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=63.63 E-value=1.5 Score=45.19 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
+.+++..||..-|. .++.|.+|||+.||+|+.+||+.+.+.-+
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55666677766443 26899999999999999999987776543
No 246
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=63.36 E-value=5.6 Score=30.84 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.-++.+|+++.+|||+.+|..+.++.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 34689999999999999999988764
No 247
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.20 E-value=14 Score=33.71 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+.|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 46799999999999999987 66677765
No 248
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=63.16 E-value=7.4 Score=31.52 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999875
No 249
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=63.09 E-value=10 Score=36.09 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
-.-|+..||-.=..++ |+.|...+.+++|+.+|||+..|...+.-|
T Consensus 21 ~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 21 YRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp --CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3457777776665555 566677899999999999999998766554
No 250
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=63.01 E-value=7.6 Score=33.65 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.+.|.+|||+.+|||+.+|+++ +.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~i----l~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQL----VSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 47899999999999999998854 455554
No 251
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=62.67 E-value=8.7 Score=32.47 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=34.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 549 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG----ISrerVRqie~RAL 549 (569)
..|++.|..||..-+. +.+.|..|||+.+| +++.+|..++.+-.
T Consensus 6 ~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp CCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 4688888888876543 25799999999999 89999987665543
No 252
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=62.54 E-value=3.5 Score=32.49 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~ 546 (569)
..|+.|||+..|||+.+|+..++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 46999999999999999998765
No 253
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.37 E-value=5.8 Score=32.31 Aligned_cols=25 Identities=0% Similarity=0.105 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
...+..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999976654
No 254
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=62.34 E-value=11 Score=31.88 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHH-HHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 008352 498 VRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 547 (569)
Q Consensus 498 L~~aL~~L~~rER-~VL~LRygL~d~e~~Tl~EIAe~L-GISrerVRqie~R 547 (569)
+..++..+..+-+ .||..-.. .+.+..|||+.+ ||++.+|.+++.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ----GTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH----SCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 4556677776544 34443322 479999999999 9999999865543
No 255
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.26 E-value=6.8 Score=36.43 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36799999999999999987 56667765
No 256
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=61.96 E-value=17 Score=31.40 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+.++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999887755 3556899999999988 67888998888888887753
No 257
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=61.91 E-value=9.8 Score=33.41 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 549 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG----ISrerVRqie~RAL 549 (569)
+..|++.|..|+..-+.. +.+.|..||++.++ +++.+|..++.+-.
T Consensus 4 ~~~lt~~e~~vL~~L~~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR--TEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC--SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhc--CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 357999999998876531 25799999999998 89999987665543
No 258
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=61.91 E-value=5.9 Score=34.82 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008352 521 DGKPKSLSEVGNIFG-----LSKERVRQLES 546 (569)
Q Consensus 521 d~e~~Tl~EIAe~LG-----ISrerVRqie~ 546 (569)
++.++|++|+|+.+| ||+..|.++++
T Consensus 21 ~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 21 GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 346899999999998 99999999996
No 259
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.80 E-value=32 Score=32.32 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999997 56667765
No 260
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=61.68 E-value=6.3 Score=34.10 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
.|++.+..||..-+. +.+.|..+||+.+|+++.+|.+++.+-.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 478888887766543 14789999999999999999876554443
No 261
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=61.59 E-value=8 Score=33.97 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.++|++|+|+.+|||+.+|.++++.-
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 68999999999999999999999754
No 262
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=61.40 E-value=34 Score=31.46 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+.|.++||..+|+|+++|. |++++|++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 35899999999999999987 55666665
No 263
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=61.36 E-value=26 Score=33.46 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999987 66667765
No 264
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=61.32 E-value=7.8 Score=29.63 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=17.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie~ 546 (569)
+..+.|+.||||+.++...++
T Consensus 35 n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 788999999999999876543
No 265
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=61.23 E-value=7.8 Score=37.49 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.++..++|+.||||+.+|| +||+.|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VR----eAL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVR----EALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 4578899999999999999998 67777754
No 266
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.97 E-value=3.6 Score=31.45 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie 545 (569)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 399999999999999999986
No 267
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=60.78 E-value=6.6 Score=34.85 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+.|..+||+.+|||+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999865544
No 268
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.76 E-value=54 Score=28.21 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.|..+.+.+.+.+.+.+......++...+..+..+ ...+...+..+||+.+|++...+..++.
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA--------CEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH--------HHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhCCCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 45555555566666555433334444333333322 1233235899999999999999988875
No 269
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=60.65 E-value=6.3 Score=33.32 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999864
No 270
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=60.59 E-value=14 Score=31.71 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+.++||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999887754 3456889999999999 67889999998888888864
No 271
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=60.51 E-value=7.3 Score=35.99 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 46899999999999999987 56666765
No 272
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=60.36 E-value=21 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIF-GLSKERVRQLESRALYRL 552 (569)
Q Consensus 523 e~~Tl~EIAe~L-GISrerVRqie~RALkKL 552 (569)
-++|+.+||+.| |....||.....+.-+.+
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 589999999999 899999986655554444
No 273
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=59.65 E-value=7.4 Score=36.78 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=28.8
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 512 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 512 VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
|+.-.| ..|+.++..++|+.||||+..|| .|+++|..
T Consensus 25 I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 25 ILNHEL--KLGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHTTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 34578899999999999999998 67777765
No 274
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=59.45 E-value=8.1 Score=32.58 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999863
No 275
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=59.34 E-value=16 Score=34.32 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..||..-+. ..+.|..|||+.+|+++.+|..++.+
T Consensus 45 gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp TCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999998876553 14799999999999999999865544
No 276
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=59.31 E-value=29 Score=32.58 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 36899999999999999987 56667765
No 277
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=59.21 E-value=8.1 Score=34.07 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..++|+.||||+.+|| +|++.|..
T Consensus 24 ~G~~LPse~~La~~~gvSr~tVr----~Al~~L~~ 54 (129)
T 2ek5_A 24 IDQRVPSTNELAAFHRINPATAR----NGLTLLVE 54 (129)
T ss_dssp TTSCBCCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 44666 99999999999999998 47777754
No 278
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=58.92 E-value=4 Score=39.30 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSL--SEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl--~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..+|..-|.+.. ++.|. .+||+.+|+|+.+|+..+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 477777777776665543 24555 99999999999999865544
No 279
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=58.31 E-value=8.3 Score=32.37 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|.++++.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999864
No 280
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=58.12 E-value=5.1 Score=36.78 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+-+|+.|+|+.||||+.+|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 3479999999999999999997653
No 281
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.97 E-value=23 Score=29.00 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+.++.+||+.+|+|+.++.++.++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 8999999999999999999888776
No 282
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=57.87 E-value=11 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.123 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
..|+|-|+-....++. + .++|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L~-~--~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGREL-A--KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH-H--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888776555442 2 479999999999999999998764
No 283
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=57.71 E-value=9.8 Score=31.15 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKER----VRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrer----VRqie~R 547 (569)
.++|.+|+|+.+|||+.+ |.++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 579999999999999999 8888865
No 284
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=57.68 E-value=8.3 Score=31.90 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 285
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=57.18 E-value=3.5 Score=34.45 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|..+ |..|||+.||||+.+|++ |++.|.+
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~----al~~L~~ 61 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSR----ALAVLKS 61 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHH----HTTTTTT
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 999999999999999985 5555543
No 286
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=56.95 E-value=12 Score=33.33 Aligned_cols=48 Identities=13% Similarity=-0.028 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHhcccC-C-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIED-G-KPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d-~-e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
.|++.|-.||..-+.+.+ | .+.|.++||+.+|+|...|-+++.+-++|
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 588888887766555432 3 55799999999999999998777665543
No 287
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=56.95 E-value=15 Score=29.87 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
.++.+..+|.-.|..+.. .....++||+.+|+|+..|.........|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 566667777776653321 345678999999999999999999999888864
No 288
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=56.92 E-value=37 Score=28.74 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|..+.+.+.+.+.+.+......++...+..+..+ ....+...+..+||+.+|++...+..++.
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLR 69 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHH
Confidence 4445555555555555443344444444333332 12222367899999999999999988765
No 289
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=56.59 E-value=7.5 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFG-----LSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LG-----ISrerVRqie~ 546 (569)
+.++|++|+|+.+| ||+..|.++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 46899999999999 99999999996
No 290
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=56.47 E-value=10 Score=34.94 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|++|+|+.+|||+.+|.++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999974
No 291
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=56.34 E-value=8.2 Score=36.19 Aligned_cols=27 Identities=7% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 5799999999999999987 66666765
No 292
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=56.15 E-value=10 Score=34.89 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|++++|+.+|||+.+|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999974
No 293
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=56.09 E-value=11 Score=32.73 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIF--GLSKERVRQLESR 547 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~L--GISrerVRqie~R 547 (569)
+++-++.||.+--- + .+.|..+||+.+ |+|+.+|++++++
T Consensus 11 md~~d~~IL~~L~~--~-g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--E-GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--H-SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--c-CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 66777788765321 1 389999999999 9999999977654
No 294
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=56.09 E-value=13 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 509 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 509 ER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
|+.+|..-+-- .+.+..+.|+.||||+.++...++
T Consensus 20 E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 20 EKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44554443321 234788999999999999887554
No 295
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=56.01 E-value=8 Score=30.38 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~ 546 (569)
..|..++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999873
No 296
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=55.82 E-value=7 Score=37.15 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|+|+.+|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6789999999999999999999875
No 297
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=55.47 E-value=35 Score=29.27 Aligned_cols=72 Identities=7% Similarity=0.102 Sum_probs=41.3
Q ss_pred hhhcCCCCCCchhhHHHHHHHHHHHHHHHhcc-cceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHH
Q 008352 370 VEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (569)
Q Consensus 370 iekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~-r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v 448 (569)
..+|++.. +-.|..+++.+.+.+.+.+.. ....++...+..+..+ ...+ ..+..+||+.+|++...+
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 34455542 345666666666666665432 2234444444333332 2234 678999999999999999
Q ss_pred HHHHH
Q 008352 449 ERLIF 453 (569)
Q Consensus 449 ~~ll~ 453 (569)
..++.
T Consensus 72 s~~l~ 76 (148)
T 3nrv_A 72 SRTVK 76 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 298
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=55.27 E-value=6.8 Score=31.28 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.-+|.+|+|+.|||++.+|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 3479999999999999999998754
No 299
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=55.24 E-value=20 Score=27.81 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 456666677766653321 344678999999999999999998888887753
No 300
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=55.02 E-value=12 Score=35.73 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHHhcccCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 512 IVRLRFGIEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 512 VL~LRygL~d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
|+.-.| ..|+.+ +-.++|+.||||+..|| .||+.|..
T Consensus 17 I~~g~l--~pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 17 LRSGRL--KIGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHTSS--CTTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 345778 67899999999999998 57777765
No 301
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=54.63 E-value=44 Score=30.02 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHhccc-CC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIE-DG---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~-d~---------e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+...+..+|-.-.+..... .| -+.|.++||..+|+|+++|. |++++|++
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 165 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVS----KVLADLRR 165 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4567777776543332111 01 24899999999999999987 66667765
No 302
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=54.38 E-value=24 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhcccCCC---CCCHHHHHHHhCCCHHHHHHH
Q 008352 491 KQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGK---PKSLSEVGNIFGLSKERVRQL 544 (569)
Q Consensus 491 ~~el~e~L~~aL~~L~~rER~VL~LRygL~d~e---~~Tl~EIAe~LGISrerVRqi 544 (569)
.+.+...|. ..++++++.|...--+--|.. ..++.+||+.+|++.+.|...
T Consensus 15 ~ehL~~Ql~---~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~v 68 (76)
T 2k9l_A 15 LEELQQNIK---LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKV 68 (76)
T ss_dssp HHHHHHHHH---HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHc---ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHH
Confidence 334444454 368999998877654433333 458999999999999988644
No 303
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.33 E-value=5.4 Score=33.31 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
...+..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999976654
No 304
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=54.27 E-value=13 Score=31.57 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=34.4
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 549 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG----ISrerVRqie~RAL 549 (569)
..|++.|..|+..-+- ..+.|..|||+.++ +++.+|..++.|-.
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 4689999988877654 24799999999997 58999987766543
No 305
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=54.20 E-value=8.7 Score=34.82 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.-..||.+-.. .++|..|||+.+|+|+.+|++.++
T Consensus 58 p~R~~IL~~L~~----~~~t~~eLa~~lgls~stvs~hL~ 93 (151)
T 3f6v_A 58 PTRRRLVQLLTS----GEQTVNNLAAHFPASRSAISQHLR 93 (151)
T ss_dssp HHHHHHHHHGGG----CCEEHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 445556655432 579999999999999999986554
No 306
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.95 E-value=12 Score=38.26 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+..++||.+-. ..+|+..|-+|||+.||||+.+|++ +++.||+.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k----~i~~L~~~ 46 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKK----VIDQLKLE 46 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHH----HHHHHHHT
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHH----HHHHHHhc
Confidence 34456665542 1234789999999999999999985 45566653
No 307
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=53.94 E-value=14 Score=35.77 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
..|++-|+-....+.. ..++|.++||+.+|+|+.+|++++.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4688888765554443 1579999999999999999998765
No 308
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=53.81 E-value=20 Score=29.75 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999999999888776
No 309
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=53.77 E-value=14 Score=35.06 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=25.6
Q ss_pred HHHHhccc-CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 513 VRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 513 L~LRygL~-d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
|..-|.|. .+.+.+..+||+.||+|+.+|...+++
T Consensus 8 L~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 8 LKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp HHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 33333333 346899999999999999999865544
No 310
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=53.72 E-value=8 Score=38.18 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQL 544 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqi 544 (569)
.+.|..+||+..|||+.++...
T Consensus 139 ~~~T~~~IA~~AGvs~gtlY~y 160 (311)
T 4ich_A 139 HNVRIHDIASELGTSNATIHYH 160 (311)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHh
Confidence 6799999999999999999764
No 311
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=53.39 E-value=20 Score=29.74 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999888775
No 312
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=53.25 E-value=68 Score=28.50 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.|..+.+.+.+.+.+........++...+..+..+ ...+...+..+||+.+|++...+..++.
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L--------~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 90 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI--------HQLPPDQSQIQLAKAIGIEQPSLVRTLD 90 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH--------HHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH--------HHcCCCCCHHHHHHHHCCCHhhHHHHHH
Confidence 35555566666666655444444544433333332 2223357899999999999999988765
No 313
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=53.22 E-value=6.1 Score=37.96 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhcccC-CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d-~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.+..+|..-|.+.. |...+..+||+.||+++.+|.+++.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 467777777777776542 22234599999999999999875544
No 314
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=53.15 E-value=17 Score=36.79 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 506 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 506 ~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.++...|+.+- .++...|.+|||+.||||+.+|++.+.
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~ 41 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQ 41 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45666676654 234679999999999999999987655
No 315
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.10 E-value=48 Score=27.97 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|..+.+.+.+.+.+.+......++...+..+.-+ ....+...+..+||+.+|++...+..++.
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~~~~~~~~~~~ela~~l~~~~~tvs~~l~ 72 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYL-------SRNKNKEVLQRDLESEFSIKSSTATVLLQ 72 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-------HHTTTSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HHCCCCCcCHHHHHHHHCCCcchHHHHHH
Confidence 4444444444444444332233443333333322 22233367999999999999999988775
No 316
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=53.04 E-value=29 Score=28.17 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|.+.+.+-++||..
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 76 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDI 76 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCC
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 58999999988765 3556889999999987 26788888887777777754
No 317
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=52.84 E-value=24 Score=26.20 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+++.+..+|...|.-+.. ......+||..+|++...|+.....-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4567777788777754321 22345789999999999999998887777765
No 318
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=52.79 E-value=19 Score=30.07 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. .+.|+..|.++|.+.+ ..+..+|...+.+.++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP 85 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 48999999988755 3556889999999988 46788899888888888764
No 319
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=52.68 E-value=10 Score=36.51 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.5
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 512 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 512 VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
|+.-.| ..|+.++..++|+.||||+..|| .||++|..
T Consensus 41 I~~g~l--~pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 77 (239)
T 2hs5_A 41 IIDGTF--RPGARLSEPDICAALDVSRNTVR----EAFQILIE 77 (239)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHcCCC--CCcCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444433 35578899999999999999998 57777754
No 320
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=52.64 E-value=15 Score=34.76 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie 545 (569)
+|++.|+.+--- ..-.|.+|+|+.||||..|||.-+
T Consensus 12 eR~~~i~~~l~~---~~~~~~~~la~~~~vs~~TiRrDl 47 (190)
T 4a0z_A 12 KRREAIRQQIDS---NPFITDHELSDLFQVSIQTIRLDR 47 (190)
T ss_dssp HHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEeHHHHHHHHCCCHHHHHHHH
Confidence 445555555332 245799999999999999999753
No 321
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=52.57 E-value=11 Score=35.75 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.2
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |-.|+|+.||||+.+|| .|++.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVR----eAL~~L~~ 57 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLR----EVLQRLAR 57 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 45778 89999999999999999 57777764
No 322
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=52.27 E-value=51 Score=27.20 Aligned_cols=24 Identities=4% Similarity=0.050 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008352 432 PDKEDLARRVGITVEKLERLIFIT 455 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~~~ 455 (569)
-+..+||+.+|++...|...+...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999887653
No 323
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=52.23 E-value=13 Score=35.95 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=23.6
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..|+|+.+|||+.+|| +|+..|.+
T Consensus 29 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 29 TGMLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp CCC--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 34667 89999999999999998 57777765
No 324
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=51.78 E-value=6.9 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+|.+|+|+.||||+.||.+.....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999887654
No 325
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.56 E-value=28 Score=27.80 Aligned_cols=51 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHhcccC---C--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIED---G--KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d---~--e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|--+. . ......+||..+|++...|+........|.|..
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 56777788887775210 0 012457899999999999999999988888764
No 326
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=51.45 E-value=34 Score=30.06 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhcccCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 497 HVRNLLTLLNPKERCIVRLRFGIEDGK---------PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 497 ~L~~aL~~L~~rER~VL~LRygL~d~e---------~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|-.+--.|+..|++||.+....-+.. ..+..|+++.+|++..+.-+.++.|.+.|.+
T Consensus 11 ~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 11 KLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 455666789999999998866544322 2568999999999999999999999999975
No 327
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=51.22 E-value=3.2 Score=37.54 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|||+.+|||+.+|.++++.
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999998764
No 328
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=51.20 E-value=97 Score=25.10 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=24.5
Q ss_pred HHHhcCC-CCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 424 YIQEGNH-SPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 424 l~~~~gr-~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
+.+.... .++.++||+.+|+++..+..+...
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344444 789999999999999999888653
No 329
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=51.10 E-value=8.7 Score=32.64 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
++|..|+|+.+|||..++|..+...+
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999988754
No 330
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=51.00 E-value=20 Score=30.18 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+.++||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 48999999887755 3556889999999988 56778888888888887753
No 331
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=50.86 E-value=15 Score=35.66 Aligned_cols=30 Identities=40% Similarity=0.472 Sum_probs=24.7
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..|+|+.||||+.+||+ |++.|..
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 60 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQ----ALSNLVN 60 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 34666 899999999999999984 7777765
No 332
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=50.71 E-value=31 Score=26.75 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 504 LLNPKERCIVRLRFGIEDGKPK----SLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~----Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
.+|+.+..+|.-.|.-+-..++ .-.+||..+|+|...|.........|++..+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 5788888888877751111222 36889999999999999999999999887543
No 333
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=50.63 E-value=83 Score=27.28 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhc
Q 008352 432 PDKEDLARRVGITVEKLERLIFIT 455 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~~~ 455 (569)
-+..+||+.+|++...|...+...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 578999999999999999887643
No 334
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=50.31 E-value=15 Score=35.58 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|+.+ |..|+|+.+|||+.+||+ |+..|..
T Consensus 25 ~g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 55 (239)
T 3bwg_A 25 QGDKLPVLETLMAQFEVSKSTITK----SLELLEQ 55 (239)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 34667 899999999999999984 7777765
No 335
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=50.08 E-value=44 Score=25.70 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..-
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 10 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 567777788877764322 3345689999999999999999988888887654
No 336
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=49.92 E-value=1.5e+02 Score=27.02 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhCCCCcHHHHHHHcCCCHHHHHH
Q 008352 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321 (569)
Q Consensus 288 le~~~~~l~~~~g~~pt~~ewA~a~g~~~~~L~~ 321 (569)
+.+....+....|+.|+..+.|...|++.+.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (239)
T 1rp3_A 101 IKEVVEKLKEKLGREPTDEEVAKELGISTEELFK 134 (239)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHH
Confidence 4456667778889999999999999998776643
No 337
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=49.74 E-value=18 Score=35.21 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|..+||+.+|||..+|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 4689999999999999999999973
No 338
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=49.32 E-value=29 Score=33.05 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.++|..++|+.+|||..+|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 679999999999999999999975
No 339
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=49.12 E-value=11 Score=35.41 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSK-ERVRQLESRALYRLKQ 554 (569)
Q Consensus 524 ~~Tl~EIAe~LGISr-erVRqie~RALkKLR~ 554 (569)
+.|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7887 66666765
No 340
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=49.10 E-value=3.6 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 510 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 510 R~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
+.|+.++- .|+|..+||+.||||+.||.+++...
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 44555543 57999999999999999999877654
No 341
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=49.01 E-value=19 Score=37.07 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCHHHHHHHHH--HhcccCCCCCCHHHHHHHh--CCCHHHHHHHHH
Q 008352 505 LNPKERCIVRL--RFGIEDGKPKSLSEVGNIF--GLSKERVRQLES 546 (569)
Q Consensus 505 L~~rER~VL~L--RygL~d~e~~Tl~EIAe~L--GISrerVRqie~ 546 (569)
|++|++.||.. ...+..+++-+.+++++.+ |||..|||.-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999983 1123445899999999999 999999996543
No 342
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=48.90 E-value=1.2e+02 Score=26.51 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.2
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 428 GNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 428 ~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.+...+..+||+.+|++...+..++.
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 34456779999999999999988765
No 343
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.78 E-value=29 Score=27.56 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 456666666666653221 22346789999999999999999998888887654
No 344
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=48.60 E-value=14 Score=30.96 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+-++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 48999999887755 3556889999999998 56778888888887777753
No 345
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.33 E-value=1.2e+02 Score=25.42 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
+..+.+.+.+.+.+.+......++...+..+..+ ... +...+..+||+.+|++...+..++.
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~-~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 13 TLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHL-------ARH-RDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHH-------HHC-SSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHc-CCCCCHHHHHHHhCCChhhHHHHHH
Confidence 3344444445455444333334444444333332 112 2367899999999999999988775
No 346
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=48.25 E-value=12 Score=30.81 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 507 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 507 ~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.-|+.+|..-+-.. +.+..+.|+.||||+.++...++
T Consensus 50 ~~E~~~i~~aL~~~---~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 50 ELERTLLTTALRHT---QGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHT---TTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCHHHHHHHHCcCHHHHHHHHH
Confidence 44666665544322 23567999999999999976544
No 347
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=48.17 E-value=17 Score=36.05 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=24.9
Q ss_pred CCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 521 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 521 d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.|..+ |..|+|+.||||+.+|| +|+..|..
T Consensus 49 ~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 49 PHTRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 34667 99999999999999998 57777765
No 348
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=48.09 E-value=50 Score=25.43 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 566677777777754322 34467899999999999999999888888877543
No 349
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=48.05 E-value=16 Score=35.49 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=25.5
Q ss_pred ccCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 519 IEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 519 L~d~e~~-Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+..|+.+ |..|+|+.+|||+.||| +|+..|.+
T Consensus 30 ~~~g~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 62 (248)
T 3f8m_A 30 MRIGDPFPAEREIAEQFEVARETVR----QALRELLI 62 (248)
T ss_dssp CCTTCBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3344677 99999999999999998 56777654
No 350
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=47.99 E-value=95 Score=26.84 Aligned_cols=63 Identities=8% Similarity=0.093 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHhcc-cceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 382 ASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 382 STYA~~wIRqaI~~~Ir~~~-r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
-.|..+.+.+.+.+.+.+.. ....++...+..+..+ ...+ ..+..+||+.+|++...+..++.
T Consensus 22 l~~~l~~~~~~~~~~~~~~l~~~~~lt~~~~~iL~~l--------~~~~-~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 22 LPYRLSVLSNRISGNIAKVYGDRYGMAIPEWRVITIL--------ALYP-GSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--------HHST-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HhCC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 34444455555555544332 2233444333333322 1233 67899999999999999988765
No 351
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.98 E-value=23 Score=34.66 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.|++.|-.||..-+. .+|.+.|..|||+.+++++.+|..++.+-
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~rL 198 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNNL 198 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 699999988877654 22236999999999999999998665543
No 352
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=47.78 E-value=19 Score=28.31 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie~R 547 (569)
|+.++|+.+|||+.+|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 353
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=47.53 E-value=11 Score=35.10 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-++|.++||..+|+|+++|. |++++|++
T Consensus 177 l~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36789999999999999987 55566654
No 354
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=47.33 E-value=12 Score=31.28 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=29.4
Q ss_pred HHHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 008352 499 RNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 547 (569)
Q Consensus 499 ~~aL~~L~~rER~-VL~LRygL~d~e~~Tl~EIAe~L-GISrerVRqie~R 547 (569)
..+++.+..+-+. ||..-+ + .+++..||++.+ |+|+.+|.+++++
T Consensus 16 ~~~l~~l~~~~~~~IL~~L~---~-~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 16 RKSMQIFAGKWTLLIIFQIN---R-RIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp HHHHHHHTSSSHHHHHHHHT---T-SCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHH---h-CCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 3444555555443 333322 2 579999999999 5999999865543
No 355
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=47.32 E-value=13 Score=35.35 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHhcCC-HHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 500 NLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 500 ~aL~~L~-~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.++..|. +-...||.+-.. .+++..|||+.+|+|..+|.+.++
T Consensus 7 ~ilkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 7 RLLDVLGNETRRRILFLLTK----RPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp HHHHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344443 455556655432 589999999999999999986554
No 356
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=47.31 E-value=8.6 Score=34.65 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+.|.++||..+|+|+++|.++.++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999877654
No 357
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=47.11 E-value=29 Score=31.68 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHhccc---CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIE---DGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~---d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.|+.+.+..|+.-..|. ++.+.|.+|||+.+|+|+..|++++.
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~ 66 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIG 66 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45555555444433332 34579999999999999998886543
No 358
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=47.09 E-value=12 Score=31.07 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+++..++|+..|||+.++..|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 589999999999999999998864
No 359
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=46.92 E-value=10 Score=34.13 Aligned_cols=39 Identities=5% Similarity=0.107 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie 545 (569)
.+++.+++++..... +.+.+..+||+.+|+|+.+|++.+
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHH
Confidence 355666676665443 157899999999999999998654
No 360
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=46.89 E-value=14 Score=33.91 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
-+.|.++||..+|+|+++|. |++++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFS----RIMHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHH----HHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHH----HHHHHHHHC
Confidence 46799999999999999987 566677663
No 361
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=46.87 E-value=34 Score=35.23 Aligned_cols=180 Identities=8% Similarity=0.038 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHH
Q 008352 338 LRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKV 417 (569)
Q Consensus 338 lrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki 417 (569)
+..|..++.++ .+.+-+.|.-.-+++-+...+.-+|-+....+.-.|.-+++ .
T Consensus 130 ~~~I~~~~~~L-----~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR----~------------------ 182 (345)
T 4bbr_M 130 FAKITMLCDAA-----ELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCR----R------------------ 182 (345)
T ss_dssp HHHHHHHHHHT-----TCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHH----H------------------
T ss_pred HHHHHHHHHHc-----CCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHH----h------------------
Confidence 44556666555 23477888888888888777777887666555544443332 1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCC-------CCCcchhhcccCC--CCCChhHH
Q 008352 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA-------DQDTTFQEITADT--GVEIPDIS 488 (569)
Q Consensus 418 ~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~-------d~~~~l~d~i~D~--~~~~pee~ 488 (569)
.+.+-+..||+..++++..++..........+.+....+. -......++++.- ...-+. .
T Consensus 183 ----------~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-~ 251 (345)
T 4bbr_M 183 ----------AEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-Q 251 (345)
T ss_dssp ----------TCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC--------------------------------------
T ss_pred ----------cCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-H
Confidence 2335678888888888888877665443333332210000 0000001111100 000000 0
Q ss_pred HHHHHHHHHHHHHHh--cCCHHH-----HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 489 VQKQLMRQHVRNLLT--LLNPKE-----RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 489 l~~~el~e~L~~aL~--~L~~rE-----R~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
+.. .-.+.+..+.. .+.-|- --+|.+--.+. |...|.+|||+..|||..|||+..+.-+..+...+.
T Consensus 252 v~~-~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~-g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~ 325 (345)
T 4bbr_M 252 VTT-SAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLF-QIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVD 325 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Confidence 000 00011111110 011110 11122221122 378999999999999999999988877777666553
No 362
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=46.67 E-value=48 Score=26.74 Aligned_cols=54 Identities=13% Similarity=-0.038 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 505 LNPKERCIVRLRFGIEDG----KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~----e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
++..+..+|.-.|.-+-. ....-.+||..+|+|...|......+..+.+..+..
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 566667777665531100 122567899999999999999999999999876644
No 363
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=46.64 E-value=16 Score=35.37 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+.++|+.|||+.+|+++.+|..++..
T Consensus 19 ~~~~s~~ela~~~gl~~stv~r~l~~ 44 (241)
T 2xrn_A 19 PHGLSLAAIAQLVGLPRSTVQRIINA 44 (241)
T ss_dssp TTCEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999866543
No 364
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=46.63 E-value=48 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
-++|+.+||+.||-...||..-..+.-+.++
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999865555555444
No 365
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.62 E-value=65 Score=27.39 Aligned_cols=61 Identities=5% Similarity=0.129 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|..+.+.+.+.+.+........++...+..+.-+. .. + ..+..+||+.+|++...+..++.
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~~-~-~~t~~eLa~~l~~~~~~vs~~l~ 73 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------AN-E-PISQKEIALWTKKDTPTVNRIVD 73 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------HH-S-SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------Hc-C-CcCHHHHHHHHCCCHhhHHHHHH
Confidence 44445555555555555444445544444444331 11 2 57899999999999999988765
No 366
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=46.54 E-value=18 Score=35.06 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|+.|||+.+|+++.+|.++++.
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999876653
No 367
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=46.44 E-value=1.4e+02 Score=26.26 Aligned_cols=79 Identities=15% Similarity=-0.016 Sum_probs=56.6
Q ss_pred hhhC-CCCcHHHHHHHcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHh-hhhcC
Q 008352 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS-VEKFK 374 (569)
Q Consensus 297 ~~~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirA-iekFD 374 (569)
...| ...|..+.|+.+|++...+-....+-+.-+..++..+..-+..........+.+..+.+...+..++.. +...+
T Consensus 28 ~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 28 LRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred HHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 3346 457999999999999999999888877888888888777777666666555677777777777766666 44444
Q ss_pred C
Q 008352 375 P 375 (569)
Q Consensus 375 p 375 (569)
+
T Consensus 108 ~ 108 (212)
T 3knw_A 108 W 108 (212)
T ss_dssp -
T ss_pred c
Confidence 3
No 368
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=46.33 E-value=7 Score=33.61 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=28.6
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 511 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 511 ~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.||....+ ..+|+.|.++.+|||.+.|...+....
T Consensus 41 ~VV~~v~~----g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 41 AVVRGVIY----GLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp HHHHHHHH----TTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35555554 689999999999999999999987753
No 369
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=46.29 E-value=31 Score=25.56 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566677777777753321 12346789999999999999998887777664
No 370
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=46.16 E-value=24 Score=31.40 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++++.||++.+|||+.+|.+++++
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999999999999866543
No 371
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=45.90 E-value=25 Score=34.16 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.++|+.|||+.+|+++.+|..+++
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999986654
No 372
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.85 E-value=31 Score=26.77 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..-
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 566666777766653221 2234678999999999999999998888887654
No 373
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=45.64 E-value=25 Score=31.33 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 521 DGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 521 d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
++...|.+|||+.+|||+..|++++.
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~kil~ 52 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKIMS 52 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34679999999999999998886543
No 374
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=45.61 E-value=33 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566677777777753321 22346789999999999999999887777664
No 375
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=45.51 E-value=49 Score=27.52 Aligned_cols=46 Identities=13% Similarity=0.023 Sum_probs=30.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 008352 343 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388 (569)
Q Consensus 343 sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~w 388 (569)
.+.........+++||.+...+.--.--..|.-..|..|..|+..+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 59 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLEL 59 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3344444556889999988777766655666666677777765543
No 376
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.33 E-value=28 Score=26.92 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 456666667666653211 223467899999999999999998888888764
No 377
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=45.21 E-value=19 Score=29.51 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=18.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~ 546 (569)
.+..+.|+.||||+.++...++
T Consensus 55 GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4688999999999999876543
No 378
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=44.58 E-value=38 Score=26.84 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 506 NPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 506 ~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+..+..+|.-.|..+.. .+....+||..+|+|+..|+.....-..|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 34555666666653321 3456789999999999999999999999888643
No 379
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=44.57 E-value=37 Score=26.50 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHh---cccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhcC
Q 008352 504 LLNPKERCIVRLRF---GIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 559 (569)
Q Consensus 504 ~L~~rER~VL~LRy---gL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~~ 559 (569)
.+++.+..+|.-.| .-+.. ....-.+||..+|+|...|.........+.|......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46777888888777 32111 1224578999999999999999999999998765443
No 380
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=44.41 E-value=31 Score=25.94 Aligned_cols=50 Identities=8% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 10 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 566777777777753321 22346789999999999999998777777653
No 381
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=44.39 E-value=28 Score=27.47 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 431 SPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
.++..|||+.+|++...+...+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 689999999999999999887753
No 382
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.32 E-value=35 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+.|.++||+.+|+++++|+..+.+
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 5899999999999999999976543
No 383
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=44.24 E-value=30 Score=27.94 Aligned_cols=23 Identities=0% Similarity=0.150 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..|||+.+|+++..|+..+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 67899999999999999998765
No 384
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.96 E-value=13 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+|..|+|+.+|||..++|..+.+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 478999999999999999999876
No 385
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=43.78 E-value=4.9 Score=37.59 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
.|+|..+||+.||||+.||.+++.+....
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 57999999999999999998876654433
No 386
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=43.70 E-value=20 Score=30.35 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 553 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR 553 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|+..+.+.++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999987755 3566899999999988 4677888888887777774
No 387
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.39 E-value=24 Score=27.55 Aligned_cols=55 Identities=15% Similarity=0.016 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 504 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 504 ~L~~rER~VL~LRygL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
.+++.+..+|.-.|.- +.. ....-.+||..+|+|...|.........|.+..+..
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3566677777766631 100 122456899999999999999999999998876543
No 388
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=43.34 E-value=30 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+...|.+|||+.+|||+..|++++.
T Consensus 26 ~~~~s~~~IA~~~~i~~~~l~kil~ 50 (143)
T 3t8r_A 26 QGCISLKSIAEENNLSDLYLEQLVG 50 (143)
T ss_dssp SCCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3578999999999999998886544
No 389
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.33 E-value=67 Score=28.09 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.|...++.+.+.+.+.+...-..++...+..+..+. ..+ ..+..+||+.+|++...+..++.
T Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~--------~~~-~~t~~eLa~~l~~~~~~vs~~l~ 89 (161)
T 3e6m_A 28 PYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLS--------AYG-ELTVGQLATLGVMEQSTTSRTVD 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH--------HHS-EEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------hCC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555555443333334444343333321 123 57899999999999999988765
No 390
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=43.26 E-value=35 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 58999999887754 3556889999999987 35667788777777777653
No 391
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=42.98 E-value=11 Score=32.05 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
+|..|+|+.+|||..|+|..+...+
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6899999999999999999987543
No 392
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=42.94 E-value=53 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
++.|+++||+.+|+|+.++..+.++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999888775
No 393
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=42.74 E-value=34 Score=27.60 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHhcccCCCC----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 504 LLNPKERCIVRLRFGIEDGKP----KSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~----~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
.+++.+..+|.-.|.-....+ ....+||..+|++...|.........|.|.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 467778888888873111122 2457899999999999999999999999876543
No 394
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.68 E-value=42 Score=26.71 Aligned_cols=52 Identities=8% Similarity=0.037 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 567777788877753221 1224678999999999999999988777777643
No 395
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=42.64 E-value=24 Score=30.98 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIF-GLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~L-GISrerVRqie~R 547 (569)
.++++.||++.+ |||+.+|.+++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 479999999999 7999999866543
No 396
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.62 E-value=25 Score=34.32 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.++|+.|||+.+|+++.+|.++++
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3689999999999999999986654
No 397
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=42.34 E-value=27 Score=34.11 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++.|+.+|..-.-..+|.+.+..++|+.||+++.++...+.+
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 46777777776543222346789999999999999999876555
No 398
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=42.34 E-value=42 Score=25.41 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|..
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566667777777753321 223467899999999999999998888777753
No 399
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=42.30 E-value=46 Score=27.57 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
.+++.+..+|...|.-+.. ......+||..+|++...|+.....-..|.|....
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4778888888888853221 12246789999999999999999888888877543
No 400
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=42.15 E-value=54 Score=25.21 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 567777888888763321 12245789999999999999999888888776543
No 401
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=41.93 E-value=41 Score=26.59 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 455666667666653221 122457899999999999999998888888765543
No 402
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=41.89 E-value=1.8e+02 Score=27.58 Aligned_cols=77 Identities=8% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHhcCCCcccCCCCCCCCCcchhhcccCCCCCChhHHHHHHHHH
Q 008352 416 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADTGVEIPDISVQKQLMR 495 (569)
Q Consensus 416 ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~~~~~~~SLD~~v~~d~~~~l~d~i~D~~~~~pee~l~~~el~ 495 (569)
.+.++...+.+......+.+++|+.+|+++..+..+.+. -.. +|-+.+...-+
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~-------------------------t~~~~l~~~Rl- 222 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGV-------------------------KFRELINSIRI- 222 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTC-------------------------CHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCC-------------------------CHHHHHHHHHH-
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCC
Q 008352 496 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLS 537 (569)
Q Consensus 496 e~L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGIS 537 (569)
..+..+--. ..+|..|||..+|-+
T Consensus 223 --------------~~A~~lL~~----~~~si~eIA~~~Gf~ 246 (276)
T 3gbg_A 223 --------------SYSISLMKT----GEFKIKQIAYQSGFA 246 (276)
T ss_dssp --------------HHHHHHHHH----TCCCHHHHHHHTTCS
T ss_pred --------------HHHHHHHhC----CCCCHHHHHHHhCCC
No 403
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=41.78 E-value=63 Score=28.61 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHHHhcccCCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 503 TLLNPKERCIVRLRFGIEDGKP---KSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 503 ~~L~~rER~VL~LRygL~d~e~---~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
..++++++.|...--+--|..| .+++|||+.+|++.+.|. ++++.|+.
T Consensus 15 ~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ~ 65 (130)
T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVLR 65 (130)
T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHhc
Confidence 3689999988776554334344 589999999999999886 45556654
No 404
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=41.75 E-value=39 Score=25.89 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|.-+.. ......+||..+|+|...|......-..|.|..
T Consensus 8 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 8 FTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 567777888888753221 122457899999999999999998888887754
No 405
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=41.58 E-value=92 Score=23.06 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+++.+..+|.-.|.- +.. ......+||..+|+|...|.........+.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4677788888877763 111 11235689999999999999999888877664
No 406
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=41.00 E-value=24 Score=34.46 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+.++|+.|||+.+|+++.+|.+++..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~t 59 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLT 59 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46899999999999999999876553
No 407
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=40.96 E-value=29 Score=25.99 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|.
T Consensus 6 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 6 FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 566777777777753321 12246789999999999999998887777664
No 408
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=40.87 E-value=56 Score=27.54 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred cCCHHHHHHHH-HHhc--ccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 504 LLNPKERCIVR-LRFG--IEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 504 ~L~~rER~VL~-LRyg--L~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.|++-+-.|+. |... .-.|..+++.+||+.+++++.+++..+.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 46676666666 3322 11335689999999999999999865544
No 409
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=40.81 E-value=18 Score=34.15 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.6
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 512 IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 512 VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
|+.-.| ..|+.++..++|+.||||+..|| .|+++|..
T Consensus 29 I~~g~l--~pG~~L~E~~La~~lgVSRtpVR----EAl~~L~~ 65 (222)
T 3ihu_A 29 LELGTF--VPGQRLVETDLVAHFGVGRNSVR----EALQRLAA 65 (222)
T ss_dssp HHHTSS--CTTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHhCCC--CCCCccCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 444443 34588899999999999999998 57777764
No 410
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=40.34 E-value=40 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 421 ~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..++..+.|..||..|||+.+|++...+...+.
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 334455677899999999999999888877654
No 411
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=40.30 E-value=34 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 008352 432 PDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.+..+||+.+|++...+..++.
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~ 73 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIK 73 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 8899999999999999988875
No 412
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=39.97 E-value=1.2e+02 Score=26.65 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=21.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcC
Q 008352 432 PDKEDLARRVGITVEKLERLIFITR 456 (569)
Q Consensus 432 Pt~eEIA~~lgis~e~v~~ll~~~~ 456 (569)
-+..+||+.+|++...|...+....
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4789999999999999999886543
No 413
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=39.88 E-value=34 Score=27.87 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHH-HHHHHHHh
Q 008352 431 SPDKEDLARRVGITVE-KLERLIFI 454 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e-~v~~ll~~ 454 (569)
+.+..+||+.||++.. .|+..+..
T Consensus 25 ~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 25 DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 6679999999999999 99887753
No 414
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=39.77 E-value=1.1e+02 Score=25.86 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~ 78 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVD 78 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHH
Confidence 57899999999999999988775
No 415
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=39.59 E-value=51 Score=27.78 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHHH
Q 008352 343 HVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388 (569)
Q Consensus 343 sIArry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~w 388 (569)
.+.........+++||.+...+.--.--..|.-. |..|..|...+
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~ 58 (120)
T 3mkl_A 14 TVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTEC 58 (120)
T ss_dssp HHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3333334456888999888777665555556555 77777665543
No 416
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=39.31 E-value=29 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 551 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkK 551 (569)
.+++.+..+|...|.-+.. ......+||..+|+|...|.........+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4677788888887764321 12346789999999999999988766554
No 417
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=39.15 E-value=89 Score=26.09 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|..+.+.+.+.+.+........++...+..+.-+ ...+ ..+..+||+.+|++...+..++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~~~~ela~~l~~s~~tvs~~l~ 65 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI--------HREP-GIKQDELATFFHVDKGTIARTLR 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH--------HHST-TCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HHcC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3444455555555554443334444333333322 1222 67899999999999999988775
No 418
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=39.00 E-value=41 Score=24.65 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRL 552 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKL 552 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 567777788877753321 123467899999999999999887665553
No 419
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=38.47 E-value=38 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 431 SPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
.-|..++|+.+|++...|..+...
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 357788999999998888888664
No 420
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=38.44 E-value=63 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.078 Sum_probs=25.2
Q ss_pred HHHHHHHhhhhCCCCcHHHHHHHcCCCHHHHHHH
Q 008352 289 EKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322 (569)
Q Consensus 289 e~~~~~l~~~~g~~pt~~ewA~a~g~~~~~L~~~ 322 (569)
.++..-++..+..++++.++|+.+|++...|.+.
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~ 39 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRM 39 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3444455666777889999999999988777655
No 421
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=38.19 E-value=53 Score=26.56 Aligned_cols=70 Identities=11% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CCCHHHHHHHhCCCHHH----HHHHHHhcCCCcccCCCC--CCCCCcchhhcccCCCCCChhHHHHHHHHHHHHHHHHhc
Q 008352 431 SPDKEDLARRVGITVEK----LERLIFITRMPLSMQQPV--WADQDTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTL 504 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~----v~~ll~~~~~~~SLD~~v--~~d~~~~l~d~i~D~~~~~pee~l~~~el~e~L~~aL~~ 504 (569)
.-|..++|+.+|++... |..+...... .+++.-. ..--+.++.+++..+ + ....+...+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~-p~~~~l~~la~~l~v~~~~l~~~~------~------~~~~~~~~~~~ 80 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHA-PDFEMANRLAKVLKIPVSYLYTPE------D------DLAQIILTWNE 80 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHTSCGGGGGCCC------H------HHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCC-CCHHHHHHHHHHHCcCHHHHhCCC------h------hHHHHHHHHHh
Confidence 45789999999999999 8877664332 2222100 000011222222211 1 12345567899
Q ss_pred CCHHHHHHH
Q 008352 505 LNPKERCIV 513 (569)
Q Consensus 505 L~~rER~VL 513 (569)
|++.++..|
T Consensus 81 l~~~~~~~~ 89 (98)
T 3lfp_A 81 LNEQERKRI 89 (98)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999988
No 422
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=38.03 E-value=49 Score=26.37 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 566666777776653211 1223578999999999999999988888887643
No 423
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=37.83 E-value=28 Score=31.70 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie~R 547 (569)
|.+|+|+.+|||+.+|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 424
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=37.08 E-value=35 Score=28.76 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=18.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~ 546 (569)
....+.|+.||||+.+++..++
T Consensus 72 gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 72 GNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp TCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4788999999999999986544
No 425
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.04 E-value=53 Score=28.22 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 430 HSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 430 r~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
...+..+||+.+|++...+..++.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~ 79 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQ 79 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHH
Confidence 367899999999999888877765
No 426
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=36.92 E-value=51 Score=25.37 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|+|...|......-..|.|...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 566677777777753321 2234678999999999999999988888887644
No 427
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=36.79 E-value=28 Score=27.23 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=19.1
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLE 545 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie 545 (569)
++.+.|+.||||+.+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999986
No 428
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=36.77 E-value=80 Score=27.59 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 382 STYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..|..+.+.+.+.+.+........++...+..+..+ ...+ ..+..+||+.+|++...+..++.
T Consensus 20 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l--------~~~~-~~t~~eLa~~l~~~~~tvs~~l~ 82 (162)
T 3k0l_A 20 LSYMIARVDRIISKYLTEHLSALEISLPQFTALSVL--------AAKP-NLSNAKLAERSFIKPQSANKILQ 82 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH--------HHCT-TCCHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 445566666666666655433334444444443332 2233 67899999999999988887765
No 429
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=36.73 E-value=14 Score=31.27 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.+.|+.|+|+.+|||.+.|......-
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 47899999999999999999988664
No 430
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=36.58 E-value=34 Score=28.36 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..|||+.+|+++..|+..+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 67899999999999999998775
No 431
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=36.33 E-value=23 Score=34.66 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.++|+.|||+.+|+++.+|..++.
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4689999999999999999986654
No 432
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=36.31 E-value=17 Score=32.25 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 525 KSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 525 ~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
+|..|+|+.+|||..++|..+...+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999999987643
No 433
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.21 E-value=39 Score=26.87 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 556666777777653321 12246789999999999999999888888877543
No 434
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=35.94 E-value=29 Score=29.87 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
++.|+.+||+.+|+|+.++.++.++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999998888775
No 435
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.94 E-value=23 Score=27.37 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 456666677766653221 22346789999999999999999888777665
No 436
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=35.73 E-value=26 Score=27.79 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=25.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 526 SLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 526 Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
...+||..+|++...|......-..|.|..
T Consensus 46 ~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 46 MLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 357899999999999999999888887753
No 437
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=35.60 E-value=1.4e+02 Score=24.79 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.|..+.+.+.+.+.+...... .++...+..+..+. ..+ ..+..+||+.+|++...+..++.
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l~--------~~~-~~t~~ela~~l~~~~~tvs~~l~ 74 (140)
T 2nnn_A 14 GFILRQANQRYAALFANGIGN-GLTPTQWAALVRLG--------ETG-PCPQNQLGRLTAMDAATIKGVVE 74 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHH--------HHS-SBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--------HcC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 344555555666666554443 45544444433321 123 67899999999999999988775
No 438
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.30 E-value=35 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 455566666666643321 334578999999999999999998887777653
No 439
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=35.05 E-value=18 Score=32.19 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHh-cccCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRF-GIEDGKPKSLSEVGN----IF--GLSKERVRQLESRA 548 (569)
Q Consensus 504 ~L~~rER~VL~LRy-gL~d~e~~Tl~EIAe----~L--GISrerVRqie~RA 548 (569)
.|+-.|+.-|..++ - ...++|..+||+ .| ||++.+|+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~--~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQ--LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHS--SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46767777666666 2 125789999999 99 99999999998764
No 440
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=34.74 E-value=29 Score=30.78 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=26.5
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhCC-CHHHHHHHHHH
Q 008352 512 IVRLRFGIEDGKPKSLSEVGNIFGL-SKERVRQLESR 547 (569)
Q Consensus 512 VL~LRygL~d~e~~Tl~EIAe~LGI-SrerVRqie~R 547 (569)
-|..+.. .|+|+.+|+...|| |+.||...+.+
T Consensus 20 ~I~~~i~----~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 20 DICSLLS----SGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HHHHHHH----TTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHH----CCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3444444 78999999999999 99999998876
No 441
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=34.45 E-value=68 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
++.|+.+||+.+|+|.....++.++
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6899999999999998888876654
No 442
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=34.28 E-value=77 Score=26.49 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=19.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~ 69 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQ 69 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHH
Confidence 57899999999999888877665
No 443
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.16 E-value=74 Score=24.64 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|.- +.. ......+||..+|++...|......-..|.|...
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 567777888888752 211 1224678999999999999999988888877754
No 444
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.16 E-value=50 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=35.8
Q ss_pred HhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 502 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 502 L~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
+..|++.|+.|+.+..-- +++|.+.++|...+|++..+|. ++|++|-
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-Gn~GIw~kdL~~~tnL~~~~vt----kiLK~LE 78 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEIN----KILKNLE 78 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-TTSCEEHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHhCCCHHHHH----HHHHHHH
Confidence 357888888888876542 3488999999999999988766 4555553
No 445
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=34.15 E-value=13 Score=31.32 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 008352 501 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 549 (569)
Q Consensus 501 aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LG----ISrerVRqie~RAL 549 (569)
....|++.|..|+..-+. . .+.|..||++.++ ++..+|..++.+-.
T Consensus 29 ~~~~LT~~e~~VL~~L~~--~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 29 VEFNVSNAELIVMRVIWS--L-GEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp --CCCCCSCSHHHHHHHH--H-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHh--C-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 345699999888877654 2 4799999999997 57888886665543
No 446
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=33.64 E-value=20 Score=35.41 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
+.++|+.|||+.+|+++.+|..++.
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~ 67 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLA 67 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3679999999999999999986654
No 447
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=33.63 E-value=20 Score=32.27 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
..+|..|+|+.+|||..++|..+...+
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~GL 29 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKINL 29 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHCCC
Confidence 357999999999999999999987643
No 448
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=33.44 E-value=39 Score=33.61 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 008352 509 ERCIVRLRFGIEDGKPKSLSEVGNIFG-------LSKERVRQLESRA 548 (569)
Q Consensus 509 ER~VL~LRygL~d~e~~Tl~EIAe~LG-------ISrerVRqie~RA 548 (569)
.|.+|.+.|- .|++..+|++.|+ +|+.+|..+.++-
T Consensus 11 ~R~~i~~~~~----~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFH----LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 3555666666 7899999999987 9999999988764
No 449
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=33.43 E-value=59 Score=25.63 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 444555556555542211 2234578999999999999999988888777654
No 450
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=33.42 E-value=43 Score=26.83 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=38.1
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4667777777777753321 223467899999999999999998888887753
No 451
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=33.35 E-value=41 Score=32.21 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.....|..-|.|. ++.+..+||+.||+|+.+|+. ++++|++
T Consensus 13 ls~s~EdYLk~I~~L~--~~V~~~~LA~~LgvS~~SV~~----~lkkL~e 56 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLLK--EPLGRKQISERLELGEGSVRT----LLRKLSH 56 (200)
T ss_dssp -CCCHHHHHHHHHHTT--SCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCccHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 4444455555555552 578999999999999999985 5666665
No 452
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.32 E-value=30 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 455555566665543211 22346789999999999999999887777665
No 453
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=33.28 E-value=1.5e+02 Score=24.84 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 384 YA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
|..+.+.+.+.+++........++...+..+..+ ...+ ..+..+||+.+|++...+..++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l--------~~~~-~~t~~~la~~l~~s~~~vs~~l~ 65 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRV--------CENP-GIIQEKIAELIKVDRTTAARAIK 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHH--------HHST-TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCc-CcCHHHHHHHHCCCHhHHHHHHH
Confidence 3444455555555554443344554444443332 1222 56899999999999999988775
No 454
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=33.27 E-value=54 Score=33.69 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 008352 510 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 550 (569)
Q Consensus 510 R~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALk 550 (569)
+.||.+-+- ..+.|..|||+.+|+|+.||.++..+-+.
T Consensus 19 ~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555432 25799999999999999999988766554
No 455
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=33.24 E-value=22 Score=32.65 Aligned_cols=28 Identities=25% Similarity=0.560 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
-+.|.++||..+|+|+++|. |++++|++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp --------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 36899999999999999987 45555554
No 456
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=33.06 E-value=39 Score=28.50 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCCC--HHHHHHHh-CCCHHHHHHHHH
Q 008352 523 KPKS--LSEVGNIF-GLSKERVRQLES 546 (569)
Q Consensus 523 e~~T--l~EIAe~L-GISrerVRqie~ 546 (569)
.+++ +.||++.+ |||..++.+.++
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~ 65 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIK 65 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHH
Confidence 3556 99999999 999999886554
No 457
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.01 E-value=53 Score=26.91 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
.++.+..+|...|.-+.. ......+||..+|++...|......-..|.|..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 566666777777653321 223467899999999999999998888777653
No 458
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=32.78 E-value=1.2e+02 Score=25.80 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~ 76 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQ 76 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 57899999999999999988775
No 459
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.63 E-value=1.2e+02 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 430 HSPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 430 r~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
..-|.+|||+.+|++...|...+..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4679999999999999999987653
No 460
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.62 E-value=36 Score=26.54 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhc
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 558 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~~ 558 (569)
.++.+..+|...|-.+.. ......+||..+|++...|+.....-..|.|+.-..
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 455566666666643211 233567899999999999999999888887764433
No 461
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=32.47 E-value=30 Score=34.88 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.++|.+|+|+.+|||..+|.+++.-
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999999974
No 462
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=32.44 E-value=1.2e+02 Score=26.15 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 382 STYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
-.|....+.+.+.+.+.+......++...+..+.-+. ..+ ..+..+||+.+|++...+..++.
T Consensus 24 l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~--------~~~-~~t~~eLa~~l~~~~~tvs~~l~ 86 (159)
T 3s2w_A 24 IGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLY--------RED-GINQESLSDYLKIDKGTTARAIQ 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHH--------HSC-SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH--------HCC-CCCHHHHHHHHCCCHHHHHHHHH
Confidence 3455556666666666655444445544444444331 122 56899999999999999988765
No 463
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.16 E-value=25 Score=27.33 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 456666677766653221 12346789999999999999998877776654
No 464
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.93 E-value=77 Score=27.10 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
.+.+..|+++.+|+++..++.++..
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5679999999999999999876544
No 465
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.91 E-value=81 Score=24.52 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHhcc-cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Q 008352 505 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 556 (569)
Q Consensus 505 L~~rER~VL~LRygL-~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l 556 (569)
+++.+..+|...|.. +.. ......+||..+|++...|......-..|.|..-
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 566777777777752 221 2234678999999999999999988888877654
No 466
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=31.86 E-value=1.4e+02 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHH
Confidence 67899999999999999988775
No 467
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=31.72 E-value=76 Score=26.93 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-C----CCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-G----LSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-G----ISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|+..|.++|.+.+ | .+..+|...+.+.++||..
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 58999999988765 4566889999999865 3 5677888887777777753
No 468
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=31.68 E-value=64 Score=26.10 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
.+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 4677788888888853321 12246789999999999999999888777764
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=31.18 E-value=27 Score=33.29 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 008352 521 DGKPKSLSEVGNIFGLSKERVRQLESRA 548 (569)
Q Consensus 521 d~e~~Tl~EIAe~LGISrerVRqie~RA 548 (569)
.+++.|+.++|+.||+|+.+|.+.+++-
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~L 51 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDL 51 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3467899999999999999999766543
No 470
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.08 E-value=33 Score=31.28 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 522 GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 522 ~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
++..|.++||+.+|||+..|+++ +.+|++
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~ki----l~~L~~ 54 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNI----LSVLHK 54 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 46789999999999999888865 445554
No 471
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.94 E-value=2e+02 Score=24.11 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~ 72 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLR 72 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHH
Confidence 57899999999999999988775
No 472
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.79 E-value=49 Score=25.70 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
+++.+..+|...|-.+.. ......+||..+|++...|......-..|.|..
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 455566666666643221 233567899999999999999999888887653
No 473
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=30.75 E-value=1.1e+02 Score=26.51 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhcccceecchhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 383 TYA~~wIRqaI~~~Ir~~~r~IRlP~~~~~~l~ki~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.|..+.+.+.+.+.+........++...+..+..+ ...+ ..+..+||+.+|++...+..++.
T Consensus 27 ~~~l~~~~~~~~~~~~~~l~~~~lt~~~~~iL~~l--------~~~~-~~t~~ela~~l~is~~tvs~~l~ 88 (162)
T 3cjn_A 27 PYLMNRIMGRYNANLRKEMTALGLSTAKMRALAIL--------SAKD-GLPIGTLGIFAVVEQSTLSRALD 88 (162)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHHH--------HHSC-SEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH--------HHCC-CCCHHHHHHHHCCChhHHHHHHH
Confidence 35555555556555554433333443333333322 2233 57899999999999999988775
No 474
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.64 E-value=1.1e+02 Score=25.66 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~ 69 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVK 69 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHH
Confidence 57899999999999999988775
No 475
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.44 E-value=74 Score=27.16 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHhhhhcCCCCCCchhhHHHH
Q 008352 346 KQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYW 387 (569)
Q Consensus 346 rry~~~g~~~EDLIQEG~IGLirAiekFDp~kG~rFSTYA~~ 387 (569)
........+++||..+..+.--.--..|.-..|..|..|...
T Consensus 21 ~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~ 62 (129)
T 1bl0_A 21 EDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRS 62 (129)
T ss_dssp HTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHH
Confidence 333344588899988877765555555655556666666544
No 476
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.23 E-value=1.2e+02 Score=25.79 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~ 73 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMAD 73 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 46899999999999999988775
No 477
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.00 E-value=2.1e+02 Score=24.10 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~ 67 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCK 67 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999988765
No 478
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.88 E-value=1e+02 Score=23.47 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 429 gr~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
...-+..|||+.+|++...|...+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r 54 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRAN 54 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44678999999999999999877653
No 479
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=29.73 E-value=21 Score=32.10 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 524 PKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 524 ~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
.+|..|+|+.+|||..++|..+...+
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~~Gl 41 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQGL 41 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHTTC
T ss_pred ceeHHHHHHHHCcCHHHHHHHHHCCC
Confidence 47899999999999999999988654
No 480
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.67 E-value=2e+02 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~ 73 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIR 73 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999988887765
No 481
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.61 E-value=45 Score=29.47 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-CCCHHHHHHHHH
Q 008352 498 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLES 546 (569)
Q Consensus 498 L~~aL~~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-GISrerVRqie~ 546 (569)
+..+++.|..+-+..|..... + .++++.||++.+ |||..++.+.+.
T Consensus 16 i~~~l~~lg~kW~l~IL~~L~--~-g~~rf~eL~~~l~gIs~~~Ls~~L~ 62 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHMI--D-GKKRFNEFRRICPSITQRMLTLQLR 62 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHT--T-SCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCcCHHHHHHHHh--c-CCcCHHHHHHHhcccCHHHHHHHHH
Confidence 455667777776544333221 2 579999999999 999988876543
No 482
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=29.46 E-value=41 Score=35.17 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=38.7
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 008352 494 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 547 (569)
Q Consensus 494 l~e~L~~aL~--~L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~R 547 (569)
+...+...+. .|+..|-.||..-+. ..+.++|..|||+.+++++.+|..++.|
T Consensus 389 ~~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 389 VKKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555554 589999888877654 2125799999999999999999865544
No 483
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=29.40 E-value=26 Score=31.86 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 008352 523 KPKSLSEVGNIFGLSKERVRQLESRAL 549 (569)
Q Consensus 523 e~~Tl~EIAe~LGISrerVRqie~RAL 549 (569)
..+|..|+|+.+|||..++|..+...+
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~~Gl 36 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYESKGL 36 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHHTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHcCC
Confidence 458999999999999999999988764
No 484
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=29.38 E-value=60 Score=26.25 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHhcc---cCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 504 ~L~~rER~VL~LRygL---~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
.+++.+..+|...|.- +.. ......+||..+|++...|.........|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4777778888877763 111 1224568899999999999999988877754
No 485
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.05 E-value=55 Score=25.78 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 555 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~ 555 (569)
.++.+..+|...|..+.. ......+||..+|++...|......-..|.|..
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 456666677666653321 223467899999999999999998877777653
No 486
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.50 E-value=2.8e+02 Score=23.68 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=57.1
Q ss_pred hhhC-CCCcHHHHHHHcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhh
Q 008352 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371 (569)
Q Consensus 297 ~~~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAie 371 (569)
...| ...|..+.|+.+|++...+-....+-+.-+..++......+..........+.+..+.+...+..++..+.
T Consensus 23 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (195)
T 3ppb_A 23 VSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAM 98 (195)
T ss_dssp HHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhh
Confidence 3446 45789999999999999999888877788888888887777777666666666777777776666665543
No 487
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=28.48 E-value=74 Score=29.07 Aligned_cols=46 Identities=9% Similarity=-0.006 Sum_probs=28.9
Q ss_pred HHHhcCCHHHHH-HHHHHhcccCCCCCCHHHHHHHhC-CCHHHHHHHHH
Q 008352 500 NLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIFG-LSKERVRQLES 546 (569)
Q Consensus 500 ~aL~~L~~rER~-VL~LRygL~d~e~~Tl~EIAe~LG-ISrerVRqie~ 546 (569)
+.+.-|....|. ||.+-.+ ......|..||++.++ ||+.+|++.++
T Consensus 21 ~~~~~l~~~tR~~IL~~Ll~-~p~~~~ta~eL~~~l~~lS~aTVyrhL~ 68 (151)
T 3u1d_A 21 ERRRFVLHETRLDVLHQILA-QPDGVLSVEELLYRNPDETEANLRYHVD 68 (151)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-STTSCBCHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHc-CCCCCCCHHHHHHhcCCCCHHHHHHHHH
Confidence 334444444444 4444333 1123479999999999 99999997654
No 488
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=28.29 E-value=18 Score=30.28 Aligned_cols=50 Identities=4% Similarity=-0.056 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHhcccCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHH
Q 008352 504 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~e~~Tl~EIAe~L-----GISrerVRqie~RALkKLR~ 554 (569)
.|+++|..+|.+-. ...|...|.++|.+.+ .++..+|++.+.+.++||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 47888888887654 2445789999999988 46778888888887777754
No 489
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=28.27 E-value=1.6e+02 Score=25.60 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=53.1
Q ss_pred CcHHHHHHHcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhcC
Q 008352 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374 (569)
Q Consensus 303 pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekFD 374 (569)
.|..+.|+.+|++...+-.-..+-+.-+..++..+..-+..........+.+..+.+...+..++.......
T Consensus 32 ~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (204)
T 3eup_A 32 TSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSLF 103 (204)
T ss_dssp CCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGTTS
T ss_pred CCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhccC
Confidence 589999999999999988887777777788887777766666666555566777777766666666554443
No 490
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=28.12 E-value=59 Score=24.98 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=22.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 008352 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 428 ~gr~Pt~eEIA~~lgis~e~v~~ll~~ 454 (569)
.+...+..|||+.+|++...|..++..
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344678999999999999999988764
No 491
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.12 E-value=1.3e+02 Score=26.65 Aligned_cols=22 Identities=9% Similarity=0.298 Sum_probs=19.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHHh
Q 008352 433 DKEDLARRVGITVEKLERLIFI 454 (569)
Q Consensus 433 t~eEIA~~lgis~e~v~~ll~~ 454 (569)
++.|+|+.+|+++..++.+...
T Consensus 4 ~I~e~A~~~gvs~~tLR~Ye~~ 25 (142)
T 3gp4_A 4 NIKEASEKSGVSADTIRYYERI 25 (142)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHC
Confidence 6789999999999999988664
No 492
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=28.06 E-value=40 Score=31.12 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 511 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 546 (569)
Q Consensus 511 ~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~ 546 (569)
.|+..+-- .++|.++||+.+|+|+..|-.++.
T Consensus 17 ~I~~AK~~----KGLTwe~IAe~iG~S~v~vtaa~l 48 (156)
T 1dw9_A 17 AILLSKAK----KDLSFAEIADGTGLAEAFVTAALL 48 (156)
T ss_dssp HHHHHHHH----TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHH----cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 35556655 889999999999999999988764
No 493
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=28.04 E-value=2.9e+02 Score=23.73 Aligned_cols=78 Identities=10% Similarity=-0.082 Sum_probs=56.7
Q ss_pred hhhhC-CCCcHHHHHHHcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhhhhc
Q 008352 296 QSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373 (569)
Q Consensus 296 ~~~~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAiekF 373 (569)
-...| ...|..+.|+.+|++...+-....+-+.-+..++..+..-+............+..+.+...+-.++..+...
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERP 98 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGGTCC
T ss_pred HHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhhhC
Confidence 34456 4479999999999999999888877778888888887777766666665555677777776666655554433
No 494
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=28.02 E-value=1.6e+02 Score=28.18 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHH
Q 008352 418 LEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 418 ~ka~~~l~~~~gr~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
.++...+.+......+.++||+.+|+++..+..+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444555566789999999999999999988865
No 495
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=27.99 E-value=1.1e+02 Score=26.06 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 008352 431 SPDKEDLARRVGITVEKLERLIF 453 (569)
Q Consensus 431 ~Pt~eEIA~~lgis~e~v~~ll~ 453 (569)
..+..+||+.+|++...+..++.
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~ 77 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVD 77 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999988775
No 496
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=27.91 E-value=1.3e+02 Score=24.99 Aligned_cols=54 Identities=17% Similarity=-0.010 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHhcccCC----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhh
Q 008352 504 LLNPKERCIVRLRFGIEDG----KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 557 (569)
Q Consensus 504 ~L~~rER~VL~LRygL~d~----e~~Tl~EIAe~LGISrerVRqie~RALkKLR~~l~ 557 (569)
.|++....||.-.|.-.-. ....-.+||+.+|+|...|......+..+.+..+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 3677777777766641100 12234689999999999999999999999987553
No 497
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=27.87 E-value=4.1 Score=36.99 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhcccCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+....+.|+. .+. .|...|..|||+.+|+|+.+||. |+++|..
T Consensus 11 ~d~l~~~Il~-~l~--~~~~ls~~eLa~~lgvSr~~vr~----al~~L~~ 53 (163)
T 2gqq_A 11 LDRIDRNILN-ELQ--KDGRISNVELSKRVGLSPTPCLE----RVRRLER 53 (163)
T ss_dssp CCSHHHHHHH-HHH--HCSSCCTTGGGTSSSCCTTTSSS----THHHHHH
T ss_pred hhHHHHHHHH-HHH--hCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4555666766 332 33678999999999999999984 5666654
No 498
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=27.48 E-value=43 Score=25.54 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 553 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR 553 (569)
+++.+..+|.-.|.-+.. ......+||..+|+|...|......-..+.|
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 566677777777753321 1224578999999999999999877776654
No 499
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=27.40 E-value=2.3e+02 Score=24.82 Aligned_cols=72 Identities=15% Similarity=0.014 Sum_probs=47.6
Q ss_pred hC-CCCcHHHHHHHcCCCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhh
Q 008352 299 FG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (569)
Q Consensus 299 ~g-~~pt~~ewA~a~g~~~~~L~~~l~~G~~Are~LI~~nlrLV~sIArry~~~g~~~EDLIQEG~IGLirAi 370 (569)
.| ...|..+.|+.+|++...+-.-..+-+.-+..++.....-+..........+.+..+.+...+..++...
T Consensus 41 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (212)
T 3nxc_A 41 DGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFG 113 (212)
T ss_dssp -----CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 35 4579999999999999988887777667777777776666555555544444566666655555555443
No 500
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.28 E-value=38 Score=26.22 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhcccCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 008352 505 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 554 (569)
Q Consensus 505 L~~rER~VL~LRygL~d~-e~~Tl~EIAe~LGISrerVRqie~RALkKLR~ 554 (569)
+++.+..+|...|..+.. ......+||..+|++...|......-..|.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 566667777777753211 12246789999999999999998777666543
Done!