BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008353
         (569 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53285|VPS62_YEAST Vacuolar protein sorting-associated protein 62 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=VPS62 PE=1
           SV=1
          Length = 467

 Score = 43.1 bits (100), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 41/217 (18%)

Query: 271 SPYIYLHPDEKYLPSSVSWYFDNGALLYRKGEESKPIPIEPMGS-------NLPQGG--- 320
           SP ++L+ +EKY P+ V  +     L    GE+     +  +          L  G    
Sbjct: 91  SPLLHLYSEEKYWPADVKDFVKRFQLRDHSGEKIINEHLRDLSDLQEYYSVELENGTWGR 150

Query: 321 -SNDGAYWLDLPVNDKAKERVKKGDLQNSQVYLHIKPML------GATYTDIAIWIFYPF 373
            S++G Y   L   DK  + +     +    ++   P +      G  + D   + FYPF
Sbjct: 151 VSSEGTYMTSLDDFDKGPDWLLGEQPEYGTGHIKKAPAVLFVVDKGNGWVDAFWFYFYPF 210

Query: 374 N-GPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNFNGELWRVFLSQHSGGTWVNASEL 432
           N GP      +I  +  G  G HVGDWEH  +R   + GE   +++S H GG+      +
Sbjct: 211 NWGP------YI--MGSGPWGNHVGDWEHSLVRF--YKGEPQYLWMSAHGGGSAYKFEAI 260

Query: 433 EF-------------QSGNKPVTYASLNGHAMYAKPG 456
           E              +   KP+ +++   HA YA  G
Sbjct: 261 EKIKRLRRVDGKLTNEVIKKPLIFSARGTHAHYASVG 297


>sp|Q06466|TDA6_YEAST Putative vacuolar protein sorting-associated protein TDA6
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=TDA6 PE=2 SV=1
          Length = 467

 Score = 38.5 bits (88), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 46/231 (19%)

Query: 262 QIETMVQAYSPYIYLHPDEKYLPSSVSWYFDNGALLYRKG------------EESKPIPI 309
           +I + V  + P ++L+ +EKY PS ++ Y  N  +  + G            +      +
Sbjct: 77  EIPSYVINHCPLVHLYSEEKYWPSDIAEYVQNFQIKDKNGNSISTHENLTLHDLKAEYHV 136

Query: 310 EPMGSNLPQGGSNDGAYWLDLPVNDKAKERV-----KKGDLQNSQV-YLHIKPMLGATYT 363
           +  G+       +   +   L   DK  + +     + G   NS+   + I    G  + 
Sbjct: 137 DLFGNKTETHIPSSEVFLTSLDDFDKDPKWLLGHLPEYGTGYNSKAPAILIVVDKGNGWV 196

Query: 364 DIAIWIFYPFN-GPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNFNGELWRVFLSQHS 422
           D   + FYPFN GP      FI  +  G  G HVGDWEH  +R   + G    +++S HS
Sbjct: 197 DAFWFFFYPFNHGP------FI--MGHGPWGNHVGDWEHSLVRF--YKGIPKYLWMSAHS 246

Query: 423 GGTWVNASELE-FQSGNK----------------PVTYASLNGHAMYAKPG 456
            GT      +E F+   K                P+ +++   HA YA  G
Sbjct: 247 SGTGYRYEAVEKFKKLRKRKQQDSDDGGDTILERPLIFSARGTHANYASAG 297


>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF
            PE=1 SV=3
          Length = 3046

 Score = 33.1 bits (74), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 210  RGTEEMGVSVGTFAAQINGNDNSPSTSTTLACLKNIMAKSNLSSYNYMPNLQQIETMV 267
            R +E+ G    TF  QING DN P       CLK I ++S + S N  P +  I  ++
Sbjct: 1519 RESEKKGQRTSTF--QINGKDNKPKIYLKGECLKEI-SESRVVSGNVEPKVNNINKII 1573


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.135    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,338,095
Number of Sequences: 539616
Number of extensions: 11311818
Number of successful extensions: 17681
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 17679
Number of HSP's gapped (non-prelim): 6
length of query: 569
length of database: 191,569,459
effective HSP length: 123
effective length of query: 446
effective length of database: 125,196,691
effective search space: 55837724186
effective search space used: 55837724186
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)