Query 008353
Match_columns 569
No_of_seqs 280 out of 375
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 22:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008353.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008353hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06101 DUF946: Plant protein 100.0 5E-169 1E-173 1363.3 50.4 527 26-568 1-535 (535)
2 PF06101 DUF946: Plant protein 98.9 4.7E-09 1E-13 116.1 10.8 144 23-180 49-217 (535)
3 PF05630 NPP1: Necrosis induci 95.9 0.014 3.1E-07 58.2 5.9 89 343-444 49-137 (206)
4 PF01705 CX: CX module; Inter 12.2 1.6E+02 0.0035 23.9 2.0 25 397-423 24-49 (61)
5 PF15584 Imm44: Immunity prote 11.6 2.5E+02 0.0054 25.2 3.1 15 122-136 65-79 (94)
6 COG3657 Uncharacterized protei 11.0 1.6E+02 0.0036 26.5 1.8 33 386-423 34-70 (100)
7 PF10240 DUF2464: Protein of u 9.4 2.7E+02 0.0059 29.0 3.0 27 89-115 74-100 (251)
8 COG5508 Uncharacterized conser 8.6 1.3E+02 0.0027 26.4 0.2 8 395-402 71-78 (84)
9 PF06424 PRP1_N: PRP1 splicing 8.2 1.4E+02 0.0031 28.2 0.4 7 152-158 1-7 (133)
10 PF03351 DOMON: DOMON domain; 7.5 9E+02 0.02 21.0 5.2 51 127-181 4-54 (124)
No 1
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=100.00 E-value=5.1e-169 Score=1363.27 Aligned_cols=527 Identities=57% Similarity=1.058 Sum_probs=504.0
Q ss_pred CcccccCCCCCCCCCCCCCceeeeeecCCeEEEEccccceeeecccCCCCCCceEEeeecCCCCCCceEEccccccCCCC
Q 008353 26 IETTFKLPAPIPTWPPGEGFGSGTIDLGGLQVRQITSFKKIWATHEGGPDNAGTTFFEPSTIDIPPGFFMLGCYAQPNNT 105 (569)
Q Consensus 26 ~~~~f~~p~~~p~~p~g~~Fa~g~i~lg~L~v~~~t~F~rVW~~~~g~~~~~~~SfWrP~~~~~P~Gy~~LGdy~~~~~~ 105 (569)
+|++|+||+|||+||||+|||+|+|+||+|+|++|++|+|||.+.+++++++++|||||++ +|+||++||||||+|++
T Consensus 1 ~~~~f~~p~~~~~~p~g~~fa~g~I~lG~L~V~~~s~F~rVW~~~~g~~~~~~vSfwRP~~--vP~Gf~~LGdyaqpn~~ 78 (535)
T PF06101_consen 1 IPTPFSLPAPLPSWPQGGGFASGRIDLGELEVAQVSTFERVWWDKGGGGSRKGVSFWRPVG--VPPGFVILGDYAQPNNK 78 (535)
T ss_pred CCccccCCCCCCCCCCCCCceeeeEecCCEEEEEeccceEEEECCCCCCCCCceEEeccCC--CCCCceEEeeEeCCCCC
Confidence 5899999999999999999999999999999999999999998777778899999999998 79999999999999999
Q ss_pred CCCccEEEEECCC----CCCccCCCCceEEEecCCcccccC-CceEEEeecCCCCceeecEEEeCCCCCCCCCeEEEecc
Q 008353 106 PLFGWVLAAKDSS----GLSLKKPVDYTLVWSSESLKIKQD-GVAYVWLPTPPDGYKNVGHAITNFPEKPALDKMRCVRS 180 (569)
Q Consensus 106 Pp~~~Vlvvrd~~----~~~l~~P~~f~lVW~d~~sg~k~~-~~~s~W~PvpP~GYvALG~Vvt~~~~kP~ld~vrCVR~ 180 (569)
|++++|||+++.+ .++|++|++|+|||++.+++++++ .++|||+|+||+||+|||||||+++++|++++|||||+
T Consensus 79 P~~G~VLva~d~~~~~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~PvaP~GYvALG~Vvt~~~~~P~ld~vrCVR~ 158 (535)
T PF06101_consen 79 PPNGFVLVARDVSGSPSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLPVAPPGYVALGCVVTTGPEKPSLDSVRCVRS 158 (535)
T ss_pred CCcceEEEEecCCcccCCcccCCCCcceEEEecCCCCcccCCccEEEEecCCCCCceEEEEEEeCCCCCCCCceEEEEch
Confidence 9999999999864 479999999999999998887654 37999999999999999999999999999999999999
Q ss_pred cccccCCCccceeecCCCCeEEEeecCCCCCccccccceeeEEEeeCCCCCCCCCccccceeecccccccCCCCCCCCCh
Q 008353 181 DFTDQCQTDTWIWGANKYGLNVFSVRPSVRGTEEMGVSVGTFAAQINGNDNSPSTSTTLACLKNIMAKSNLSSYNYMPNL 260 (569)
Q Consensus 181 DLv~~~~~~~~iW~d~~s~~svW~v~p~~rg~~~~gv~~gTF~~~~~~~~~~p~~~~~~~cLkn~~~~~~~~~~~~~P~~ 260 (569)
|||++|+..++||++.+ |+||++||++|||+++||++|||+|+++..++ .+..|+||||+++ +|++||++
T Consensus 159 DLv~~~~~~~~Iw~~~~--f~vw~vrP~~rG~~~~Gv~vGTF~~~~~~~~~---~~~~i~cLkn~~~-----~l~~mp~~ 228 (535)
T PF06101_consen 159 DLVDQCEFSESIWDSSS--FSVWSVRPCDRGMWAKGVSVGTFFCQSGWSSS---EPPPIACLKNLDS-----SLSAMPNL 228 (535)
T ss_pred HhcccccccceEEccCC--eEEEecCcccceeecCCCceeeEEeecCCCCC---cccChhHhhcCCc-----ccccCCch
Confidence 99999999999998444 99999999999999999999999999988632 3569999999999 89999999
Q ss_pred hhHHHHHHHcCCeEEeCCCCCcCCCCHHHHHhcCeeeeecCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCcccccCcc
Q 008353 261 QQIETMVQAYSPYIYLHPDEKYLPSSVSWYFDNGALLYRKGEESKPIPIEPMGSNLPQGGSNDGAYWLDLPVNDKAKERV 340 (569)
Q Consensus 261 ~qi~~lv~~yAPlv~Lh~~E~y~PSsv~~f~~n~~l~~~~g~~~~p~~i~~~gsnLp~g~~nd~~~wldlp~d~~~~~~~ 340 (569)
+||++||++|||+|||||||+|+||||+|||+|++++|++++.+.+.+|+.+|+|||++++||+.||||||.+..+++.+
T Consensus 229 ~qi~~li~~YaP~vylhpeE~YlPssV~~Ff~Ng~l~~~~g~~~~~~~i~~~gsnLp~~~~nd~~~~ldl~~~~~~~~~v 308 (535)
T PF06101_consen 229 DQIHALIQKYAPLVYLHPEERYLPSSVEWFFENGALLYKKGNESNPKPIDPNGSNLPQGGTNDGDYWLDLPDDDKNKESV 308 (535)
T ss_pred HHHHHHHHhhCceEEecCccccCCccHHHHhhCceEEEcCCCccCCeecccccccCCCCCCCCccccccCcccccccccc
Confidence 99999999999999999999999999999999999999999998778999999999999999999999999998888999
Q ss_pred ccCccCCccEEEEEEecCCCcEEEEEEEEEccCCCCccceeeeeeccCCCCccCcccceeeeEEEEeCCCCeEeEEEeec
Q 008353 341 KKGDLQNSQVYLHIKPMLGATYTDIAIWIFYPFNGPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNFNGELWRVFLSQ 420 (569)
Q Consensus 341 ~~G~~~~a~~y~~v~p~~g~~~~di~yw~FY~fNg~~~~~~g~~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~v~~S~ 420 (569)
++|+|++|++|+||||++|+++|||+||+||||||++++|||++ ++++++||+|||||||+||||+|++|+|++|||||
T Consensus 309 k~G~l~~a~~yv~Vkp~~Ggt~tDi~~w~FypfNg~~~~~vg~~-~~~~~~~G~HvGDWEH~tvR~~n~~g~~~~v~~S~ 387 (535)
T PF06101_consen 309 KKGNLESAPAYVHVKPDKGGTFTDIFYWYFYPFNGPARLKVGPI-NIPLGKFGNHVGDWEHVTVRFSNFDGEPQAVYFSQ 387 (535)
T ss_pred ccCCcCCCcEEEEEEEcCCCcEEEEEEEEEecCCCCccccccee-eecccccccccccceeEEEEEECCCCcEEEEEeee
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cCCCeeeecCcccee-cCCccEEEEccCCccCCCCCccccCCCC--CCcccccccCCCceecCCCceeEEEeeccCCCCC
Q 008353 421 HSGGTWVNASELEFQ-SGNKPVTYASLNGHAMYAKPGLVLQGSG--GIGIRNDTAKSRMLLDTGRHFSIVAADYLSGSAS 497 (569)
Q Consensus 421 H~~G~~~~~~~le~~-~g~rPvvYsa~gsHa~Yp~~G~~~~~~~--~~g~~~dt~~~~~~wD~~~~~~~~~~~yl~g~~~ 497 (569)
|++|+||+++++|+. .++|||||||+||||+||+||+|+|+.. ++||++|+++++.+||++++|++|+++|+ + +
T Consensus 388 H~~G~~~~~~~le~~~~~~rPvvYsa~g~Ha~y~~~G~~~~g~~~l~~gi~~D~~~~~~~~D~~~~y~~v~~~y~-~--~ 464 (535)
T PF06101_consen 388 HSGGQWYDYSDLEFIQDGNRPVVYSARGSHANYPSPGTHLQGSPKLGIGIRNDTTDSGPLWDSSLNYEVVAAEYL-G--S 464 (535)
T ss_pred cCCCceechhhhccccCCCceEEEecCCcccCCCCCcccccCccccCccceecccCCcceEcCCcceEEEecccc-C--C
Confidence 999999999999984 5999999999999999999999999987 99999999999999999999999999998 7 5
Q ss_pred CCCCCCccccccccCCCcCCCChHHHHHHHHhCCCCchhHHHHhhhcCCccccCCcCCCCCcccCCCCCCC
Q 008353 498 VITEPPWLNYFREWGPKISYDISHEIKEIEKLLPGKLKPAFQKFVNSLPNEVLGEEGPTGPKAKSNWNGDE 568 (569)
Q Consensus 498 ~~~~~~Wl~f~G~WG~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~p~e~~~~~GPtGPk~K~~w~gde 568 (569)
.+.+|+||+|+|+|||+++||++.|+++|+++||++||+++|+|+++||.|+++||||||||+|+||.|||
T Consensus 465 ~~~ep~WL~y~g~WG~~i~y~~~~e~~~~~~~lp~~~~~~~~~~~~~~p~e~~~eegptgpk~k~~w~gde 535 (535)
T PF06101_consen 465 GVVEPPWLNYMGRWGPKIVYDSRSEIDKVEKFLPGKLRFSFENIFNKLPNELYGEEGPTGPKEKNNWEGDE 535 (535)
T ss_pred CCcCcchhhcccccCCcccCchHHHHHHHHHhChHHHHHHHHHHHHhCcHHhccCCCCCCcccccCCCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999998
No 2
>PF06101 DUF946: Plant protein of unknown function (DUF946); InterPro: IPR009291 This family consists of several hypothetical proteins, which includes vacuolar protein sorting protein 62. The function of this family is unknown.
Probab=98.91 E-value=4.7e-09 Score=116.08 Aligned_cols=144 Identities=23% Similarity=0.435 Sum_probs=96.7
Q ss_pred CCCCcccccCCCCCCC--CCCC----------CCceeeeeecCC----eEEEEccccceeeecccCCCC--CCceEEeee
Q 008353 23 GFPIETTFKLPAPIPT--WPPG----------EGFGSGTIDLGG----LQVRQITSFKKIWATHEGGPD--NAGTTFFEP 84 (569)
Q Consensus 23 ~~~~~~~f~~p~~~p~--~p~g----------~~Fa~g~i~lg~----L~v~~~t~F~rVW~~~~g~~~--~~~~SfWrP 84 (569)
......+|++|.++|+ ..+| .|+.-..-+... -.++...+|++||++...+.. ...++||+|
T Consensus 49 ~~~~~vSfwRP~~vP~Gf~~LGdyaqpn~~P~~G~VLva~d~~~~~~~p~l~~Pv~f~lVW~~~~~~~~~~~~~~sfW~P 128 (535)
T PF06101_consen 49 GSRKGVSFWRPVGVPPGFVILGDYAQPNNKPPNGFVLVARDVSGSPSNPALAKPVDFTLVWSDSGSGGKQDSEDVSFWLP 128 (535)
T ss_pred CCCCceEEeccCCCCCCceEEeeEeCCCCCCCcceEEEEecCCcccCCcccCCCCcceEEEecCCCCcccCCccEEEEec
Confidence 4556678999998775 2232 122211112211 236677899999986643332 237999999
Q ss_pred cCCCCCCceEEccccccCCC-CCCCccEEEEECCCCCCccCCCCceEEEecCCcccccCCceEEEeecCCC-Cc----ee
Q 008353 85 STIDIPPGFFMLGCYAQPNN-TPLFGWVLAAKDSSGLSLKKPVDYTLVWSSESLKIKQDGVAYVWLPTPPD-GY----KN 158 (569)
Q Consensus 85 ~~~~~P~Gy~~LGdy~~~~~-~Pp~~~Vlvvrd~~~~~l~~P~~f~lVW~d~~sg~k~~~~~s~W~PvpP~-GY----vA 158 (569)
++ |+||++||++++.+. +|+...|.|+|. .++....-.+.||.+.+ +++|.-.|-. |. ++
T Consensus 129 va---P~GYvALG~Vvt~~~~~P~ld~vrCVR~---DLv~~~~~~~~Iw~~~~--------f~vw~vrP~~rG~~~~Gv~ 194 (535)
T PF06101_consen 129 VA---PPGYVALGCVVTTGPEKPSLDSVRCVRS---DLVDQCEFSESIWDSSS--------FSVWSVRPCDRGMWAKGVS 194 (535)
T ss_pred CC---CCCceEEEEEEeCCCCCCCCceEEEEch---HhcccccccceEEccCC--------eEEEecCcccceeecCCCc
Confidence 98 999999999998765 467788999995 46666666799998643 7899555553 32 67
Q ss_pred ecEEEeCCC-CCCCCCeEEEecc
Q 008353 159 VGHAITNFP-EKPALDKMRCVRS 180 (569)
Q Consensus 159 LG~Vvt~~~-~kP~ld~vrCVR~ 180 (569)
+|.++..+. ..+..-.+.|++.
T Consensus 195 vGTF~~~~~~~~~~~~~i~cLkn 217 (535)
T PF06101_consen 195 VGTFFCQSGWSSSEPPPIACLKN 217 (535)
T ss_pred eeeEEeecCCCCCcccChhHhhc
Confidence 777775443 3555567888877
No 3
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=95.90 E-value=0.014 Score=58.25 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=55.5
Q ss_pred CccCCccEEEEEEecCCCcEEEEEEEEEccCCCCccceeeeeeccCCCCccCcccceeeeEEEEeCCCCeEeEEEeeccC
Q 008353 343 GDLQNSQVYLHIKPMLGATYTDIAIWIFYPFNGPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNFNGELWRVFLSQHS 422 (569)
Q Consensus 343 G~~~~a~~y~~v~p~~g~~~~di~yw~FY~fNg~~~~~~g~~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~v~~S~H~ 422 (569)
+.|..+.||+..+-- . +..-|.|.+|||=+.+.. |. ..+-|-=||||+.|-+.|..+++.+|-+|+|+
T Consensus 49 ~~L~gsqVY~R~~~~-~-~~~aimYawYfpKd~~~~---~~-------~~~GHRHDWE~vVVWidn~~~~i~~Vs~S~hg 116 (206)
T PF05630_consen 49 SRLDGSQVYSRSRCY-N-GWCAIMYAWYFPKDQPSP---GS-------GDGGHRHDWENVVVWIDNNPSTILGVSASAHG 116 (206)
T ss_dssp GG-----EEEEEEEE-T-TEEEEEEEEEEEEEEECT------------T-EEEEEEEEEEEEEECTTT--EEEEEEEETT
T ss_pred ccccccceeeEEEEE-C-CEEEEEEEEECCCCCccc---cc-------cCCCcccceeEEEEEEcCCCCceEEEEeeecC
Confidence 456677899888753 3 466799999988775532 11 24678889999999998744699999999997
Q ss_pred CCeeeecCccceecCCccEEEE
Q 008353 423 GGTWVNASELEFQSGNKPVTYA 444 (569)
Q Consensus 423 ~G~~~~~~~le~~~g~rPvvYs 444 (569)
+-.-....+.. .+|+||.|-.
T Consensus 117 ~y~~~~~~~~~-~~Gt~pk~~Y 137 (206)
T PF05630_consen 117 GYYKRPPDSIR-FDGTHPKVVY 137 (206)
T ss_dssp EEEEES--GGG-EETTEEEEEE
T ss_pred CceEecCcccc-ccCCCeeEEE
Confidence 63323223344 5688986544
No 4
>PF01705 CX: CX module; InterPro: IPR002619 This domain has no known function. It is found in several Caenorhabditis elegans proteins. The domain contains 6 conserved cysteines that probably form three disulphide bridges.
Probab=12.21 E-value=1.6e+02 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.9
Q ss_pred cceeeeEEEEeCCCC-eEeEEEeeccCC
Q 008353 397 GDWEHVTLRISNFNG-ELWRVFLSQHSG 423 (569)
Q Consensus 397 GDWEh~tvr~~n~~G-~p~~v~~S~H~~ 423 (569)
-|||--.|+|.| | +|++|+|.=|..
T Consensus 24 ~d~el~~v~F~n--Gt~p~si~fgC~~~ 49 (61)
T PF01705_consen 24 DDWELGNVTFPN--GTRPKSIFFGCPSY 49 (61)
T ss_pred CCccccceEccC--CCcceeEEEeCCCC
Confidence 699999999987 7 899999988875
No 5
>PF15584 Imm44: Immunity protein 44
Probab=11.57 E-value=2.5e+02 Score=25.17 Aligned_cols=15 Identities=13% Similarity=0.477 Sum_probs=12.5
Q ss_pred ccCCCCceEEEecCC
Q 008353 122 LKKPVDYTLVWSSES 136 (569)
Q Consensus 122 l~~P~~f~lVW~d~~ 136 (569)
...++.|+|||.|+-
T Consensus 65 ~~~~t~WRLiWeD~R 79 (94)
T PF15584_consen 65 DEVDTRWRLIWEDKR 79 (94)
T ss_pred CccceEEEEEEeccc
Confidence 446899999999973
No 6
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=11.01 E-value=1.6e+02 Score=26.47 Aligned_cols=33 Identities=36% Similarity=0.609 Sum_probs=24.4
Q ss_pred ccCCCCccCcc----cceeeeEEEEeCCCCeEeEEEeeccCC
Q 008353 386 NIPLGKIGEHV----GDWEHVTLRISNFNGELWRVFLSQHSG 423 (569)
Q Consensus 386 ~~~~~~~G~Hv----GDWEh~tvr~~n~~G~p~~v~~S~H~~ 423 (569)
.+.+|+||+|. |=|| +|+. .|-=.+|||.||+.
T Consensus 34 rl~~GN~GD~kpvgeGV~E---LRId--~GpGyRvY~~~~g~ 70 (100)
T COG3657 34 RLALGNFGDVKPVGEGVSE---LRID--HGPGYRVYFQQRGL 70 (100)
T ss_pred HHhcCCCcCccccccchhh---heec--cCCceEEEEEecCc
Confidence 34567888873 5565 6874 48889999999975
No 7
>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor [].; PDB: 3TOW_A.
Probab=9.38 E-value=2.7e+02 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=9.0
Q ss_pred CCCceEEccccccCCCCCCCccEEEEE
Q 008353 89 IPPGFFMLGCYAQPNNTPLFGWVLAAK 115 (569)
Q Consensus 89 ~P~Gy~~LGdy~~~~~~Pp~~~Vlvvr 115 (569)
+|.||..+...+....+-...--||+|
T Consensus 74 ~P~Gy~~i~~t~dt~~~a~rKkrLCvK 100 (251)
T PF10240_consen 74 IPHGYSYISETVDTKEKALRKKRLCVK 100 (251)
T ss_dssp --TT-EE--B-TTT--B--SSEEEEEE
T ss_pred CCCCcEeccccccchhhhhcceEEEEE
Confidence 366666665554444433334445555
No 8
>COG5508 Uncharacterized conserved small protein [Function unknown]
Probab=8.58 E-value=1.3e+02 Score=26.41 Aligned_cols=8 Identities=63% Similarity=1.369 Sum_probs=6.0
Q ss_pred cccceeee
Q 008353 395 HVGDWEHV 402 (569)
Q Consensus 395 HvGDWEh~ 402 (569)
-.|||||=
T Consensus 71 RyGDWe~K 78 (84)
T COG5508 71 RYGDWEHK 78 (84)
T ss_pred cccccccc
Confidence 46899984
No 9
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=8.23 E-value=1.4e+02 Score=28.19 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=5.1
Q ss_pred CCCCcee
Q 008353 152 PPDGYKN 158 (569)
Q Consensus 152 pP~GYvA 158 (569)
||+||||
T Consensus 1 pPpgYVa 7 (133)
T PF06424_consen 1 PPPGYVA 7 (133)
T ss_pred CCCCcCC
Confidence 6778775
No 10
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=7.47 E-value=9e+02 Score=20.95 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=32.0
Q ss_pred CceEEEecCCcccccCCceEEEeecCCCCceeecEEEeCCCCCCCCCeEEEeccc
Q 008353 127 DYTLVWSSESLKIKQDGVAYVWLPTPPDGYKNVGHAITNFPEKPALDKMRCVRSD 181 (569)
Q Consensus 127 ~f~lVW~d~~sg~k~~~~~s~W~PvpP~GYvALG~Vvt~~~~kP~ld~vrCVR~D 181 (569)
.|.+=|.....+.. -...+.-|....||+|||. +....+-..|.|.|...+
T Consensus 4 ~~~l~w~~~~~~~~--i~~~l~~~~~~~~w~aiGf--s~~~~M~~~Dvv~~~~~~ 54 (124)
T PF03351_consen 4 NFSLSWTVDGDNNT--IEFELTGPANTNGWVAIGF--SDDGGMGGSDVVVCWVDD 54 (124)
T ss_pred eEEEEEEEECCCCE--EEEEEEeccCCCCEEEEEE--ccccCCCCCcEEEEEEcC
Confidence 45666766531111 2234444455589999997 333457778999998876
Done!