Query 008353
Match_columns 569
No_of_seqs 280 out of 375
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3st1_A Necrosis-and ethylene-i 96.0 0.042 1.5E-06 53.9 11.4 85 347-446 67-152 (214)
2 3gnz_P 25 kDa protein elicitor 93.0 0.31 1.1E-05 47.7 8.7 83 348-445 69-153 (213)
3 3nsw_A Excretory-secretory pro 10.0 86 0.0029 26.1 0.9 34 30-66 46-80 (106)
4 3tow_A Multivesicular BODY sub 8.4 3.8E+02 0.013 24.6 4.7 27 89-115 77-103 (152)
5 2yb5_A FUSC, putative fusidic 7.4 1.7E+02 0.0059 28.4 2.0 51 196-269 163-213 (215)
6 1jmt_B Splicing factor U2AF 65 7.2 1E+02 0.0036 20.7 0.2 10 150-159 9-18 (28)
7 3qds_A Boletus edulis lectin; 7.1 3.2E+02 0.011 24.9 3.5 27 403-429 54-80 (143)
8 2ofc_A Sclerotium rolfsii lect 5.6 4.3E+02 0.015 24.1 3.4 27 403-429 53-79 (142)
9 4b2v_A S64; toxin, ICK; NMR {S 4.5 2.1E+02 0.0073 19.2 0.5 11 1-11 16-26 (32)
10 2d9t_A Tudor domain-containing 4.5 2.8E+02 0.0094 22.2 1.2 18 542-559 59-76 (78)
No 1
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=96.04 E-value=0.042 Score=53.86 Aligned_cols=85 Identities=15% Similarity=0.132 Sum_probs=54.8
Q ss_pred CccEEEEEEecCCCcEEEEEEEEEccCCCCccceeeeeeccCCCCccCcccceeeeEEEEeCCCCeEeEEEeeccCCCee
Q 008353 347 NSQVYLHIKPMLGATYTDIAIWIFYPFNGPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNFNGELWRVFLSQHSGGTW 426 (569)
Q Consensus 347 ~a~~y~~v~p~~g~~~~di~yw~FY~fNg~~~~~~g~~~~~~~~~~G~HvGDWEh~tvr~~n~~G~p~~v~~S~H~~G~~ 426 (569)
.+.+|...+= ..+ +.-|.|=+|+|=..+. ..+ -|-=||||+-|-+.|.+.++.+|-+|+|++=.-
T Consensus 67 gsqvY~R~~~-~~g-~~aimYawYFpKD~~~------------~g~-GHRHDWE~vVVWidn~~~~i~~vs~S~hg~y~~ 131 (214)
T 3st1_A 67 KAQTYVRSAT-FQG-KTALVYAWYMPKDEIS------------TGI-GHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRK 131 (214)
T ss_dssp GCCEEEEEEE-ETT-EEEEEEEEEEEEEEEE------------TTE-EEEEEEEEEEEEEETTTCCEEEEEEEETTEEEE
T ss_pred CCCcEeEEEE-eCC-EEEEEEEEeccCCccC------------CCC-CccccceEEEEEEcCCCCeEEEEEeeccCCccc
Confidence 3468887764 333 4466666666654321 112 477799999999998667889999999975222
Q ss_pred eecCccceecCCccEE-EEcc
Q 008353 427 VNASELEFQSGNKPVT-YASL 446 (569)
Q Consensus 427 ~~~~~le~~~g~rPvv-Ysa~ 446 (569)
....+..+.+|+||.| |-..
T Consensus 132 ~~~~~~~~~~Gt~~kv~Y~~~ 152 (214)
T 3st1_A 132 YPNPGGANIDDTHVKLQYSAE 152 (214)
T ss_dssp EESCCGGGEETTEEEEEEEEE
T ss_pred cCCCccccccCCeeEEEEEec
Confidence 2223344467899865 7543
No 2
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=92.96 E-value=0.31 Score=47.72 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=53.9
Q ss_pred ccEEEEEEecCCCcEEEEEEEEEccCCCCccceeeeeeccCCCCccCcccceeeeEEEEeCC-CCeEeEEEeeccCCCee
Q 008353 348 SQVYLHIKPMLGATYTDIAIWIFYPFNGPARAKVKFINNIPLGKIGEHVGDWEHVTLRISNF-NGELWRVFLSQHSGGTW 426 (569)
Q Consensus 348 a~~y~~v~p~~g~~~~di~yw~FY~fNg~~~~~~g~~~~~~~~~~G~HvGDWEh~tvr~~n~-~G~p~~v~~S~H~~G~~ 426 (569)
..+|+..+= .++ +.-|.|=+||+=..+.. .+ -|-=||||+-|-+.|. +.++.+|-+|+|++=.-
T Consensus 69 ~qvY~R~~~-~~g-~~aimYawYFpKD~~~~------------g~-GHRHDWE~vVVWidnp~~~~i~~vs~S~hg~y~~ 133 (213)
T 3gnz_P 69 AQVYSRSGT-YNG-YYAIMYSWYMPKDSPST------------GI-GHRHDWENVVVWLDNAASANIVALSASAHSGYKK 133 (213)
T ss_dssp CCEEEEEEE-ETT-EEEEEEEEEEEEECCSS------------SC-CEEEEEEEEEEEESCTTTCCEEEEEEEETTEEEE
T ss_pred CCceeEEEE-cCC-EEEEEEEEeccCCccCC------------CC-CccccceEEEEEecCCCCceeEEEEeeccCCccc
Confidence 367877764 333 44677767777665421 12 4777999999999873 45889999999976222
Q ss_pred eecCccceecCCccEE-EEc
Q 008353 427 VNASELEFQSGNKPVT-YAS 445 (569)
Q Consensus 427 ~~~~~le~~~g~rPvv-Ysa 445 (569)
....+..+.+|+||.| |-.
T Consensus 134 ~~~~~~~~~~Gt~~kv~Y~~ 153 (213)
T 3gnz_P 134 SFPADKSYLDGITAKISYKS 153 (213)
T ss_dssp ESSCCGGGEETTEEEEEEEC
T ss_pred cCCCccceecCCceEEEEEe
Confidence 2222334457899865 744
No 3
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=10.04 E-value=86 Score=26.09 Aligned_cols=34 Identities=29% Similarity=0.638 Sum_probs=24.9
Q ss_pred ccCCCCCCC-CCCCCCceeeeeecCCeEEEEcccccee
Q 008353 30 FKLPAPIPT-WPPGEGFGSGTIDLGGLQVRQITSFKKI 66 (569)
Q Consensus 30 f~~p~~~p~-~p~g~~Fa~g~i~lg~L~v~~~t~F~rV 66 (569)
+..|..+|+ ||. |.+=+-+-|.+.+..-+++..-
T Consensus 46 ydvpktapsqwps---fgtlrddcgniqltadtdyvlg 80 (106)
T 3nsw_A 46 YDVPKTAPSQWPS---FGTLRDDCGNIQLTADTDYVLG 80 (106)
T ss_dssp CCCSSCCCSCCCS---EEEEECSSCSCCCCTTEEEEEE
T ss_pred ecCCCCCcccCCc---ccccccccCceEEecccCEEEe
Confidence 446766665 997 9777778899998888887443
No 4
>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}
Probab=8.42 E-value=3.8e+02 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=15.5
Q ss_pred CCCceEEccccccCCCCCCCccEEEEE
Q 008353 89 IPPGFFMLGCYAQPNNTPLFGWVLAAK 115 (569)
Q Consensus 89 ~P~Gy~~LGdy~~~~~~Pp~~~Vlvvr 115 (569)
+|.||..+-.-+....+-...--||+|
T Consensus 77 lP~Gf~~I~~T~dt~~~a~rKkrLCvK 103 (152)
T 3tow_A 77 LPVGFIPIQETVDTQEVAFRKKRLCIK 103 (152)
T ss_dssp CCTTCEECCBCTTTCCBCCSSEEEEEE
T ss_pred CCCCcEEeeccCCcchhhhceeEEEEE
Confidence 477887777655444433334446665
No 5
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=7.41 E-value=1.7e+02 Score=28.41 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=30.3
Q ss_pred CCCCeEEEeecCCCCCccccccceeeEEEeeCCCCCCCCCccccceeecccccccCCCCCCCCChhhHHHHHHH
Q 008353 196 NKYGLNVFSVRPSVRGTEEMGVSVGTFAAQINGNDNSPSTSTTLACLKNIMAKSNLSSYNYMPNLQQIETMVQA 269 (569)
Q Consensus 196 ~~s~~svW~v~p~~rg~~~~gv~~gTF~~~~~~~~~~p~~~~~~~cLkn~~~~~~~~~~~~~P~~~qi~~lv~~ 269 (569)
..+.++++..+-...|..+.+-.+||++|.- ..+|-.|+.. .++++.++.+
T Consensus 163 ~~~~VsLf~a~~~g~g~~g~y~tvG~YIC~D-----------~~~Cn~~i~~------------~~~L~~Fi~~ 213 (215)
T 2yb5_A 163 QESDTSLFLNKTKHNKSSGTYTKKGDYICYD-----------SFKCNQNLDD------------INNLYEFIVK 213 (215)
T ss_dssp SEEEEEEEEECC--------CCCEEEEEESS-----------HHHHHHHCCC------------HHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCCCCCCCCceEEEEeCC-----------HHHHHHHhcC------------HHHHHHHHHh
Confidence 3456888888665445566678999999982 3378777654 3667776654
No 6
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=7.21 E-value=1e+02 Score=20.74 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=7.2
Q ss_pred ecCCCCceee
Q 008353 150 PTPPDGYKNV 159 (569)
Q Consensus 150 PvpP~GYvAL 159 (569)
=|||+||..|
T Consensus 9 DvpP~GyE~v 18 (28)
T 1jmt_B 9 DVPPPGFEHI 18 (28)
T ss_dssp TCCCTTCTTS
T ss_pred CCCCCCcccc
Confidence 5788888643
No 7
>3qds_A Boletus edulis lectin; mushroom, T-antigen, carbohydrate, S binding, sugar binding protein; 1.15A {Boletus edulis} SCOP: b.97.1.2 PDB: 3qdt_A* 3qdu_A* 3qdv_A* 3qdw_A* 3qdx_A* 3qdy_A* 1x99_A* 1xi0_A
Probab=7.11 E-value=3.2e+02 Score=24.92 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.9
Q ss_pred EEEEeCCCCeEeEEEeeccCCCeeeec
Q 008353 403 TLRISNFNGELWRVFLSQHSGGTWVNA 429 (569)
Q Consensus 403 tvr~~n~~G~p~~v~~S~H~~G~~~~~ 429 (569)
||||.+.+|+-..|-+.-|.-..|+|.
T Consensus 54 ~LRf~~~~Ge~f~v~~GVHNYk~WcDI 80 (143)
T 3qds_A 54 VLRFMSDKGELITVAVGVHNYKRWCDV 80 (143)
T ss_dssp EEEEEETTCCEEEEEEEEETTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEccccCCcceeE
Confidence 799999999999999999999998873
No 8
>2ofc_A Sclerotium rolfsii lectin; dual specificity, sugar binding protein; 1.11A {Athelia rolfsii} PDB: 2ofd_A* 2ofe_A*
Probab=5.59 E-value=4.3e+02 Score=24.10 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=25.0
Q ss_pred EEEEeCCCCeEeEEEeeccCCCeeeec
Q 008353 403 TLRISNFNGELWRVFLSQHSGGTWVNA 429 (569)
Q Consensus 403 tvr~~n~~G~p~~v~~S~H~~G~~~~~ 429 (569)
||||.+..|+-..|-+.-|.-..|+|.
T Consensus 53 ~LRf~~~~Ge~F~v~vGVHNyk~WcDi 79 (142)
T 2ofc_A 53 TLRFHADNGESFTATFGVHNYKRWCDI 79 (142)
T ss_dssp EEEEEETTSCEEEEEEEEETTEEEEEE
T ss_pred eEEEecCCCCEEEEEEeeccCcchhhe
Confidence 899999999999999999999998884
No 9
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=4.51 E-value=2.1e+02 Score=19.22 Aligned_cols=11 Identities=36% Similarity=0.900 Sum_probs=8.5
Q ss_pred CCCCccccCCC
Q 008353 1 MGNNCLNNCST 11 (569)
Q Consensus 1 ~~~~~~~~~~~ 11 (569)
||.-||+.|..
T Consensus 16 mgdwccgrcir 26 (32)
T 4b2v_A 16 MGDWCCGRCIR 26 (32)
T ss_dssp TCCCCSSEEET
T ss_pred hcchhhhHHHH
Confidence 78888888764
No 10
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=4.48 E-value=2.8e+02 Score=22.23 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=13.6
Q ss_pred hhcCCccccCCcCCCCCc
Q 008353 542 VNSLPNEVLGEEGPTGPK 559 (569)
Q Consensus 542 ~~~~p~e~~~~~GPtGPk 559 (569)
|+.||.+++.++|=+||.
T Consensus 59 Lr~l~~~ll~~~~~~~~~ 76 (78)
T 2d9t_A 59 IKPVQTEAWVRDPNSGPS 76 (78)
T ss_dssp EEECCCCCCCCCSSCCSC
T ss_pred eEeCCHHHhhhcCCcCCC
Confidence 455677788888888885
Done!