Query 008353
Match_columns 569
No_of_seqs 280 out of 375
Neff 5.2
Searched_HMMs 13730
Date Tue Mar 26 00:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008353.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008353hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfca3 b.42.5.1 (A:1260-1382) 10.2 53 0.0038 26.5 1.8 18 391-408 106-123 (123)
2 d1iyjb4 b.40.4.3 (B:2732-2760, 8.4 91 0.0066 25.3 2.5 49 55-103 19-75 (111)
3 d1vgya2 d.58.19.1 (A:181-293) 7.7 61 0.0044 25.3 1.1 16 443-458 9-24 (113)
4 d2d3na1 b.71.1.1 (A:399-485) B 7.6 1.8E+02 0.013 22.4 3.9 45 373-429 7-56 (87)
5 d1ud2a1 b.71.1.1 (A:391-480) B 7.4 1.9E+02 0.014 22.5 3.9 45 373-429 10-59 (90)
6 d1jkna_ d.113.1.1 (A:) Diadeno 7.3 1.1E+02 0.0076 25.2 2.6 16 151-166 8-24 (165)
7 d1zhva1 d.58.18.8 (A:2-61) Hyp 6.7 1.9E+02 0.014 20.7 3.4 26 34-59 22-47 (60)
8 d1oh0a_ d.17.4.3 (A:) Delta-5- 6.0 1.1E+02 0.0078 23.2 1.8 15 257-271 1-15 (125)
9 d1e43a1 b.71.1.1 (A:394-483) B 5.6 2.7E+02 0.019 21.5 3.9 45 373-429 10-59 (90)
10 d1ysja2 d.58.19.1 (A:178-292) 5.4 1E+02 0.0075 23.8 1.4 18 441-458 7-24 (115)
No 1
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.23 E-value=53 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.7
Q ss_pred CccCcccceeeeEEEEeC
Q 008353 391 KIGEHVGDWEHVTLRISN 408 (569)
Q Consensus 391 ~~G~HvGDWEh~tvr~~n 408 (569)
-.++++|+||.++|++.|
T Consensus 106 a~~~~~g~~e~f~i~l~N 123 (123)
T d1dfca3 106 ASVETAGDSELFLMKLIN 123 (123)
T ss_dssp SCCSSCCSSSEEEEEECS
T ss_pred EccCCCCCceEEEEEEcC
Confidence 467899999999999976
No 2
>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.43 E-value=91 Score=25.31 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=25.4
Q ss_pred eEEEEccccceeeecc----cCCCCCCceEEeeecCC--C-CCCc-eEEccccccCC
Q 008353 55 LQVRQITSFKKIWATH----EGGPDNAGTTFFEPSTI--D-IPPG-FFMLGCYAQPN 103 (569)
Q Consensus 55 L~v~~~t~F~rVW~~~----~g~~~~~~~SfWrP~~~--~-~P~G-y~~LGdy~~~~ 103 (569)
+.|..+--.+++|... .-.....-+|||||... + +-+| .+-+.+.+..+
T Consensus 19 ~~~~r~yp~~~~~~lRV~DYrk~EKsalLSIWRP~~dl~~lL~EG~r~riyhlt~S~ 75 (111)
T d1iyjb4 19 VIVQRVYPLQWVWKLRVTSYKKREKSALLSIWRPSSDLPSLLTEGQRYRIYHLSVSK 75 (111)
T ss_dssp BCCCEECCCEEEEEEEECBSSSSCCCEEEEEESCCTTTTTTCCTTCCEEEESCCCCC
T ss_pred EEEEecccHHHhhhhheeeccccccceEEEEeCCcHHHHHHHhcCcEEEEEEEeccc
Confidence 3444444555677632 22223457999999952 0 2223 44555555443
No 3
>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}
Probab=7.68 E-value=61 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.5
Q ss_pred EEccCCccCCCCCccc
Q 008353 443 YASLNGHAMYAKPGLV 458 (569)
Q Consensus 443 Ysa~gsHa~Yp~~G~~ 458 (569)
--++++||.||+-|..
T Consensus 9 i~Gk~gHaa~P~~g~N 24 (113)
T d1vgya2 9 VKGKQGHIAYPHLAIN 24 (113)
T ss_dssp EECBCEETTCGGGCBC
T ss_pred EEEEeecccCcccCCC
Confidence 3578999999999875
No 4
>d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=7.59 E-value=1.8e+02 Score=22.43 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=30.2
Q ss_pred CCCCccceeeeeeccCCCCccCcccceee----eEEEEeCCCCeEeEEEeec-cCCCeeeec
Q 008353 373 FNGPARAKVKFINNIPLGKIGEHVGDWEH----VTLRISNFNGELWRVFLSQ-HSGGTWVNA 429 (569)
Q Consensus 373 fNg~~~~~~g~~~~~~~~~~G~HvGDWEh----~tvr~~n~~G~p~~v~~S~-H~~G~~~~~ 429 (569)
|+.++ |||+. +. ||.|| +.|-++|-.+--+.||... |.+=.|++.
T Consensus 7 FD~~n--cIGwv------R~----G~~~hp~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~ 56 (87)
T d2d3na1 7 LDHHN--IIGWT------RE----GNTAHPNSGLATIMSDGAGGSKWMFVGRNKAGQVWSDI 56 (87)
T ss_dssp CCSSS--EEEEE------EC----CCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred cCCCC--EEEEE------ec----CCccCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEc
Confidence 35555 57875 33 56676 7888998656668888865 555557774
No 5
>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=7.39 E-value=1.9e+02 Score=22.49 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=30.3
Q ss_pred CCCCccceeeeeeccCCCCccCcccceee----eEEEEeCCCCeEeEEEeeccC-CCeeeec
Q 008353 373 FNGPARAKVKFINNIPLGKIGEHVGDWEH----VTLRISNFNGELWRVFLSQHS-GGTWVNA 429 (569)
Q Consensus 373 fNg~~~~~~g~~~~~~~~~~G~HvGDWEh----~tvr~~n~~G~p~~v~~S~H~-~G~~~~~ 429 (569)
|+.++ |||+. +. ||.|| +.|-++|-.+--+.|+...+. +-.|++.
T Consensus 10 fD~~n--cIGwv------R~----G~~~~p~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~ 59 (90)
T d1ud2a1 10 FDHWD--VVGWT------RE----GSSSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDL 59 (90)
T ss_dssp CCSSS--EEEEE------EC----CCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred cCCCC--EEEEE------Ee----CCcCCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEc
Confidence 56665 57885 33 56666 788889866666888887655 5557763
No 6
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}
Probab=7.26 E-value=1.1e+02 Score=25.18 Aligned_cols=16 Identities=50% Similarity=1.072 Sum_probs=12.7
Q ss_pred cCCCCce-eecEEEeCC
Q 008353 151 TPPDGYK-NVGHAITNF 166 (569)
Q Consensus 151 vpP~GYv-ALG~Vvt~~ 166 (569)
.||+||+ ++|.|+.+.
T Consensus 8 ~~~~~yR~~Vg~vI~n~ 24 (165)
T d1jkna_ 8 SPPEGYRRNVGICLMNN 24 (165)
T ss_dssp SCCSSEEEEEEEEEECT
T ss_pred CCCCCccccEEEEEEeC
Confidence 4789999 589888764
No 7
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.70 E-value=1.9e+02 Score=20.75 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCceeeeeecCCeEEEE
Q 008353 34 APIPTWPPGEGFGSGTIDLGGLQVRQ 59 (569)
Q Consensus 34 ~~~p~~p~g~~Fa~g~i~lg~L~v~~ 59 (569)
+++|.|-.+++|.+-.-.-.||-|+-
T Consensus 22 s~iP~w~~~~~f~sItrT~dELSvVC 47 (60)
T d1zhva1 22 EAIPAWADGGGFVSITRTDDELSIVC 47 (60)
T ss_dssp CCCCTTTSSSSCCEEEECSSCEEEEE
T ss_pred CCCCccccCCCEEEEEecCCceEEEE
Confidence 78999999999988777777887654
No 8
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Probab=6.05 E-value=1.1e+02 Score=23.23 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=11.7
Q ss_pred CCChhhHHHHHHHcC
Q 008353 257 MPNLQQIETMVQAYS 271 (569)
Q Consensus 257 ~P~~~qi~~lv~~yA 271 (569)
||+.+++.++|++|.
T Consensus 1 mpt~e~~~~~v~~y~ 15 (125)
T d1oh0a_ 1 LPTAQEVQGLMARYI 15 (125)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 788888888888773
No 9
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]}
Probab=5.55 E-value=2.7e+02 Score=21.49 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=30.7
Q ss_pred CCCCccceeeeeeccCCCCccCcccceee----eEEEEeCCCCeEeEEEeeccCCCe-eeec
Q 008353 373 FNGPARAKVKFINNIPLGKIGEHVGDWEH----VTLRISNFNGELWRVFLSQHSGGT-WVNA 429 (569)
Q Consensus 373 fNg~~~~~~g~~~~~~~~~~G~HvGDWEh----~tvr~~n~~G~p~~v~~S~H~~G~-~~~~ 429 (569)
|+.++ |||+. +. ||.|| +.|-++|-.+--+.|+...+..|+ |++.
T Consensus 10 fD~~n--cIGwv------R~----G~~~~~~sGlavviSng~~g~K~M~VG~~~ag~~~~D~ 59 (90)
T d1e43a1 10 FDHHD--IVGWT------RE----GDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDI 59 (90)
T ss_dssp CCSSS--EEEEE------EC----CCTTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred cCCCC--EEEEE------ec----CCccCCCCCEEEEEeCCCcccEEEEeCcccCCCEEEec
Confidence 46665 57875 34 45553 788889866667899988876665 6663
No 10
>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]}
Probab=5.41 E-value=1e+02 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=6.9
Q ss_pred EEEEccCCccCCCCCccc
Q 008353 441 VTYASLNGHAMYAKPGLV 458 (569)
Q Consensus 441 vvYsa~gsHa~Yp~~G~~ 458 (569)
|-+-++++||.+|.-|..
T Consensus 7 v~v~Gk~aHaa~P~~g~n 24 (115)
T d1ysja2 7 IVIKGKGGHASIPNNSID 24 (115)
T ss_dssp EEEECC--------CCCC
T ss_pred EEEEEecccccCcccCcC
Confidence 456788999999988864
Done!