Query 008356
Match_columns 568
No_of_seqs 553 out of 2941
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4378 Nuclear protein COP1 [ 100.0 5.4E-40 1.2E-44 341.7 27.5 456 1-560 128-587 (673)
2 KOG0271 Notchless-like WD40 re 100.0 3.2E-27 6.9E-32 240.7 19.1 282 1-344 122-440 (480)
3 KOG0272 U4/U6 small nuclear ri 99.9 2.3E-27 5.1E-32 244.3 16.8 196 1-213 182-379 (459)
4 KOG0263 Transcription initiati 99.9 7.3E-27 1.6E-31 255.6 18.0 195 1-213 458-653 (707)
5 KOG0272 U4/U6 small nuclear ri 99.9 1.5E-26 3.3E-31 238.3 13.9 200 2-218 225-427 (459)
6 KOG0279 G protein beta subunit 99.9 1.1E-24 2.5E-29 215.0 22.0 190 2-211 71-264 (315)
7 KOG0271 Notchless-like WD40 re 99.9 1.9E-25 4.2E-30 227.8 16.4 181 1-186 164-386 (480)
8 KOG0266 WD40 repeat-containing 99.9 3.6E-24 7.7E-29 234.2 27.1 200 1-216 166-371 (456)
9 KOG0286 G-protein beta subunit 99.9 2.3E-23 5E-28 206.9 22.6 198 1-215 104-309 (343)
10 KOG0279 G protein beta subunit 99.9 6.3E-23 1.4E-27 202.7 22.2 190 6-213 28-226 (315)
11 KOG0285 Pleiotropic regulator 99.9 6.8E-23 1.5E-27 207.8 18.6 205 2-212 159-392 (460)
12 KOG0265 U5 snRNP-specific prot 99.9 7.2E-23 1.6E-27 204.0 18.1 198 1-216 54-253 (338)
13 KOG0284 Polyadenylation factor 99.9 5E-24 1.1E-28 219.0 10.1 191 2-209 146-337 (464)
14 KOG0286 G-protein beta subunit 99.9 2.6E-22 5.7E-27 199.4 21.5 186 5-207 155-343 (343)
15 KOG0263 Transcription initiati 99.9 6.7E-23 1.4E-27 224.7 18.4 197 2-216 386-614 (707)
16 KOG0273 Beta-transducin family 99.9 2.1E-22 4.5E-27 210.1 21.1 199 1-217 242-490 (524)
17 KOG0315 G-protein beta subunit 99.9 3.8E-22 8.3E-27 194.5 21.1 195 2-213 91-292 (311)
18 KOG0284 Polyadenylation factor 99.9 2.2E-23 4.7E-28 214.3 11.6 194 2-214 104-299 (464)
19 KOG1272 WD40-repeat-containing 99.9 8.4E-24 1.8E-28 220.2 7.7 249 2-287 137-393 (545)
20 cd00200 WD40 WD40 domain, foun 99.9 1.1E-20 2.3E-25 183.9 28.8 193 1-211 16-209 (289)
21 KOG0266 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 214.1 24.7 202 1-217 210-417 (456)
22 PTZ00421 coronin; Provisional 99.9 1.5E-20 3.3E-25 206.8 33.2 199 1-213 82-294 (493)
23 KOG0315 G-protein beta subunit 99.9 9.3E-22 2E-26 191.9 20.8 174 7-185 11-185 (311)
24 KOG0283 WD40 repeat-containing 99.9 9.1E-22 2E-26 217.3 23.1 199 2-217 275-540 (712)
25 KOG0310 Conserved WD40 repeat- 99.9 2E-22 4.3E-27 211.2 16.1 205 2-223 76-282 (487)
26 KOG0277 Peroxisomal targeting 99.9 3.5E-22 7.6E-27 195.3 16.5 195 1-210 67-266 (311)
27 KOG0276 Vesicle coat complex C 99.9 7.8E-22 1.7E-26 211.1 18.9 196 5-217 66-265 (794)
28 KOG0291 WD40-repeat-containing 99.9 2.9E-21 6.3E-26 210.4 22.1 198 1-215 357-556 (893)
29 KOG0291 WD40-repeat-containing 99.9 2.7E-21 5.9E-26 210.6 20.8 193 1-211 314-510 (893)
30 KOG0316 Conserved WD40 repeat- 99.9 3E-21 6.6E-26 187.0 18.7 202 2-213 25-261 (307)
31 cd00200 WD40 WD40 domain, foun 99.9 2.1E-20 4.6E-25 181.8 24.5 188 2-207 101-289 (289)
32 KOG0295 WD40 repeat-containing 99.9 4E-21 8.6E-26 195.5 19.4 190 2-209 201-406 (406)
33 KOG0273 Beta-transducin family 99.9 6.9E-21 1.5E-25 198.8 21.4 189 2-209 284-523 (524)
34 KOG0645 WD40 repeat protein [G 99.9 2.1E-20 4.6E-25 184.3 23.6 194 1-209 21-225 (312)
35 PLN00181 protein SPA1-RELATED; 99.9 1.9E-20 4.1E-25 217.8 27.0 192 1-210 490-691 (793)
36 PTZ00420 coronin; Provisional 99.9 5.3E-20 1.1E-24 204.5 28.1 196 1-211 81-295 (568)
37 KOG0295 WD40 repeat-containing 99.9 3E-21 6.6E-26 196.4 15.2 199 1-217 157-372 (406)
38 PTZ00420 coronin; Provisional 99.9 7.9E-20 1.7E-24 203.1 27.0 185 12-212 50-251 (568)
39 PTZ00421 coronin; Provisional 99.9 1.4E-19 3.1E-24 199.2 27.4 197 3-212 29-248 (493)
40 KOG0282 mRNA splicing factor [ 99.9 7.9E-21 1.7E-25 199.0 15.6 190 1-207 265-503 (503)
41 KOG0318 WD40 repeat stress pro 99.8 1.8E-19 3.8E-24 190.4 25.3 182 2-185 198-505 (603)
42 KOG0292 Vesicle coat complex C 99.8 2.4E-20 5.2E-25 205.7 19.4 198 1-214 58-285 (1202)
43 KOG0292 Vesicle coat complex C 99.8 2.7E-20 5.8E-25 205.3 19.2 194 1-209 16-236 (1202)
44 PLN00181 protein SPA1-RELATED; 99.8 2.8E-19 6.1E-24 208.1 28.7 190 2-209 540-738 (793)
45 KOG0281 Beta-TrCP (transducin 99.8 2.4E-21 5.3E-26 195.8 9.9 182 4-210 245-429 (499)
46 KOG0285 Pleiotropic regulator 99.8 5.2E-20 1.1E-24 187.0 19.4 170 29-216 144-314 (460)
47 KOG0313 Microtubule binding pr 99.8 5.9E-20 1.3E-24 187.9 18.5 192 7-212 160-379 (423)
48 KOG0282 mRNA splicing factor [ 99.8 1.3E-20 2.8E-25 197.4 13.7 210 2-217 222-470 (503)
49 KOG0264 Nucleosome remodeling 99.8 7.5E-20 1.6E-24 190.7 19.2 197 1-209 184-404 (422)
50 KOG0264 Nucleosome remodeling 99.8 5.8E-20 1.3E-24 191.5 18.1 196 4-213 134-351 (422)
51 KOG0277 Peroxisomal targeting 99.8 1.4E-19 3.1E-24 177.1 18.1 186 14-213 36-225 (311)
52 KOG0319 WD40-repeat-containing 99.8 8.7E-20 1.9E-24 198.8 18.2 199 4-218 375-586 (775)
53 KOG0269 WD40 repeat-containing 99.8 2.5E-20 5.4E-25 203.8 13.7 197 5-216 99-304 (839)
54 KOG0305 Anaphase promoting com 99.8 1.8E-19 3.8E-24 194.4 19.8 176 1-183 224-403 (484)
55 KOG0276 Vesicle coat complex C 99.8 2.6E-19 5.6E-24 192.0 19.7 200 2-217 21-223 (794)
56 KOG1446 Histone H3 (Lys4) meth 99.8 2.7E-18 5.8E-23 172.6 25.7 213 1-217 21-270 (311)
57 KOG0293 WD40 repeat-containing 99.8 9.1E-20 2E-24 187.9 15.3 194 1-211 276-515 (519)
58 KOG0275 Conserved WD40 repeat- 99.8 2.2E-20 4.7E-25 187.5 10.2 175 2-178 221-403 (508)
59 KOG0645 WD40 repeat protein [G 99.8 1.8E-18 3.9E-23 170.7 23.2 196 1-209 68-311 (312)
60 KOG0274 Cdc4 and related F-box 99.8 1.4E-18 3E-23 192.5 24.9 268 6-350 218-489 (537)
61 KOG0772 Uncharacterized conser 99.8 2.1E-19 4.6E-24 189.3 17.1 200 1-214 174-399 (641)
62 KOG0643 Translation initiation 99.8 1.6E-18 3.4E-23 170.9 20.7 204 2-223 18-234 (327)
63 KOG0640 mRNA cleavage stimulat 99.8 1.4E-19 3.1E-24 181.0 13.7 202 1-217 119-343 (430)
64 KOG0772 Uncharacterized conser 99.8 2E-19 4.3E-24 189.5 14.9 212 1-219 221-455 (641)
65 KOG0265 U5 snRNP-specific prot 99.8 6.5E-19 1.4E-23 175.9 17.0 194 2-210 98-297 (338)
66 KOG0289 mRNA splicing factor [ 99.8 7.6E-19 1.7E-23 182.1 18.1 196 6-219 231-429 (506)
67 KOG0296 Angio-associated migra 99.8 3.6E-18 7.7E-23 174.2 22.0 190 1-209 113-398 (399)
68 KOG0646 WD40 repeat protein [G 99.8 2E-18 4.3E-23 180.5 20.3 201 3-217 90-315 (476)
69 KOG0319 WD40-repeat-containing 99.8 5.2E-19 1.1E-23 192.8 16.5 184 7-207 425-617 (775)
70 KOG0318 WD40 repeat stress pro 99.8 3.1E-18 6.7E-23 181.1 21.8 200 2-217 67-273 (603)
71 KOG0293 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 178.3 19.6 282 1-350 231-518 (519)
72 KOG0302 Ribosome Assembly prot 99.8 2.2E-18 4.7E-23 176.3 17.2 190 7-210 166-379 (440)
73 KOG0647 mRNA export protein (c 99.8 6.6E-18 1.4E-22 168.9 20.1 219 1-237 34-306 (347)
74 KOG0296 Angio-associated migra 99.8 2.7E-17 5.9E-22 167.8 24.7 199 2-206 72-271 (399)
75 KOG1036 Mitotic spindle checkp 99.8 1.3E-17 2.8E-22 167.2 21.8 239 2-252 21-302 (323)
76 KOG1407 WD40 repeat protein [F 99.8 3.5E-18 7.6E-23 168.0 16.8 200 1-208 27-310 (313)
77 KOG0278 Serine/threonine kinas 99.8 1.3E-18 2.7E-23 170.1 13.6 195 1-214 107-302 (334)
78 KOG0274 Cdc4 and related F-box 99.8 4.5E-18 9.8E-23 188.4 19.7 190 5-218 260-450 (537)
79 KOG0639 Transducin-like enhanc 99.8 8.6E-19 1.9E-23 184.1 13.1 188 2-208 473-662 (705)
80 KOG0269 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 189.4 15.8 195 2-210 141-341 (839)
81 KOG0281 Beta-TrCP (transducin 99.8 5.2E-19 1.1E-23 179.1 10.3 186 5-213 286-481 (499)
82 KOG0316 Conserved WD40 repeat- 99.8 5.7E-18 1.2E-22 164.4 16.6 255 29-315 10-271 (307)
83 KOG0283 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 185.3 20.6 194 2-213 377-580 (712)
84 KOG0294 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 167.3 19.3 193 3-211 50-283 (362)
85 KOG0308 Conserved WD40 repeat- 99.8 1.4E-18 3.1E-23 187.2 12.7 197 4-217 35-251 (735)
86 KOG0268 Sof1-like rRNA process 99.8 1.8E-18 4E-23 176.1 12.7 197 7-209 80-345 (433)
87 KOG0310 Conserved WD40 repeat- 99.8 2.8E-17 6.2E-22 172.7 21.8 177 2-185 118-297 (487)
88 KOG0300 WD40 repeat-containing 99.8 3.5E-18 7.5E-23 171.4 13.7 189 8-213 162-390 (481)
89 KOG0267 Microtubule severing p 99.8 3.7E-19 8E-24 193.5 6.8 194 5-216 39-233 (825)
90 KOG0313 Microtubule binding pr 99.8 2.6E-17 5.5E-22 168.7 19.5 189 3-211 202-420 (423)
91 KOG0306 WD40-repeat-containing 99.8 2.3E-17 5E-22 180.1 19.1 191 2-209 462-664 (888)
92 KOG0270 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 171.3 17.7 194 5-212 191-407 (463)
93 KOG0299 U3 snoRNP-associated p 99.8 1.8E-17 4E-22 173.1 16.4 194 1-211 209-412 (479)
94 KOG0289 mRNA splicing factor [ 99.7 5.6E-17 1.2E-21 168.4 19.7 180 2-185 269-450 (506)
95 KOG0641 WD40 repeat protein [G 99.7 2E-16 4.3E-21 152.9 21.3 194 1-210 39-304 (350)
96 KOG0308 Conserved WD40 repeat- 99.7 6.2E-17 1.3E-21 174.7 18.7 194 3-213 82-289 (735)
97 KOG1332 Vesicle coat complex C 99.7 3.2E-17 7E-22 160.0 14.8 193 5-209 22-241 (299)
98 KOG0973 Histone transcription 99.7 1.1E-16 2.5E-21 181.0 20.3 180 2-184 21-236 (942)
99 KOG0306 WD40-repeat-containing 99.7 1E-16 2.3E-21 175.1 19.3 200 2-218 420-631 (888)
100 KOG0305 Anaphase promoting com 99.7 1.2E-16 2.6E-21 172.6 19.6 195 2-216 185-383 (484)
101 KOG0302 Ribosome Assembly prot 99.7 6.1E-17 1.3E-21 165.8 15.6 176 2-178 219-419 (440)
102 KOG0973 Histone transcription 99.7 1.4E-16 3E-21 180.4 19.6 191 2-209 77-355 (942)
103 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 3.4E-15 7.5E-20 150.2 27.5 191 6-215 1-193 (300)
104 KOG4283 Transcription-coupled 99.7 1.9E-16 4.2E-21 157.9 16.8 193 5-211 55-278 (397)
105 KOG0275 Conserved WD40 repeat- 99.7 1.5E-17 3.1E-22 167.3 8.8 190 1-207 270-507 (508)
106 KOG0643 Translation initiation 99.7 7.2E-16 1.6E-20 152.2 20.1 148 3-153 61-221 (327)
107 KOG0640 mRNA cleavage stimulat 99.7 1.5E-16 3.2E-21 159.6 15.0 165 35-212 110-294 (430)
108 KOG0288 WD40 repeat protein Ti 99.7 1.6E-16 3.5E-21 164.2 14.5 189 2-206 227-458 (459)
109 KOG1408 WD40 repeat protein [F 99.7 1.6E-16 3.5E-21 172.4 14.6 192 2-209 467-713 (1080)
110 KOG0288 WD40 repeat protein Ti 99.7 4.1E-17 8.9E-22 168.6 8.8 207 2-217 183-425 (459)
111 KOG1274 WD40 repeat protein [G 99.7 1.3E-15 2.8E-20 169.8 20.4 192 3-210 63-263 (933)
112 KOG1445 Tumor-specific antigen 99.7 4.7E-16 1E-20 167.0 16.2 200 2-212 587-801 (1012)
113 KOG0647 mRNA export protein (c 99.7 9E-16 2E-20 153.7 16.8 167 28-212 18-187 (347)
114 KOG0300 WD40 repeat-containing 99.7 7.4E-16 1.6E-20 154.8 16.2 195 2-210 280-477 (481)
115 KOG0641 WD40 repeat protein [G 99.7 4.9E-15 1.1E-19 143.3 21.2 192 1-209 96-349 (350)
116 KOG0267 Microtubule severing p 99.7 4E-17 8.6E-22 177.8 7.5 178 2-185 78-256 (825)
117 KOG0270 WD40 repeat-containing 99.7 1.8E-15 3.9E-20 157.8 19.3 195 6-214 256-454 (463)
118 KOG0278 Serine/threonine kinas 99.7 1.2E-16 2.6E-21 156.4 8.6 193 4-216 69-261 (334)
119 KOG0299 U3 snoRNP-associated p 99.7 1.1E-15 2.4E-20 159.9 16.2 199 1-218 149-365 (479)
120 KOG0307 Vesicle coat complex C 99.7 2.2E-16 4.7E-21 179.5 9.9 197 2-212 72-287 (1049)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 3.7E-14 8.1E-19 142.7 24.2 199 1-219 79-289 (300)
122 KOG1446 Histone H3 (Lys4) meth 99.6 1.7E-14 3.6E-19 145.5 20.9 178 2-185 108-293 (311)
123 KOG2096 WD40 repeat protein [G 99.6 5.7E-15 1.2E-19 148.8 17.1 196 1-209 93-308 (420)
124 KOG0303 Actin-binding protein 99.6 1.1E-14 2.3E-19 150.2 18.9 198 1-213 88-298 (472)
125 KOG1036 Mitotic spindle checkp 99.6 7.8E-15 1.7E-19 147.4 16.7 161 31-213 7-167 (323)
126 KOG1273 WD40 repeat protein [G 99.6 8.9E-15 1.9E-19 147.2 16.2 202 2-205 31-287 (405)
127 KOG1332 Vesicle coat complex C 99.6 6.3E-15 1.4E-19 144.1 14.6 188 5-207 69-284 (299)
128 KOG1188 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 147.7 16.6 195 7-213 41-246 (376)
129 KOG2445 Nuclear pore complex c 99.6 6E-14 1.3E-18 141.0 20.5 199 1-210 20-257 (361)
130 KOG1407 WD40 repeat protein [F 99.6 2.2E-14 4.7E-19 141.5 16.6 170 31-214 15-224 (313)
131 KOG0301 Phospholipase A2-activ 99.6 1.2E-14 2.7E-19 158.1 15.8 179 5-209 70-249 (745)
132 KOG0290 Conserved WD40 repeat- 99.6 1.2E-14 2.5E-19 145.1 14.2 196 2-212 104-321 (364)
133 KOG1539 WD repeat protein [Gen 99.6 2.3E-14 5E-19 158.5 17.8 179 2-187 456-637 (910)
134 KOG0303 Actin-binding protein 99.6 1E-14 2.3E-19 150.3 14.1 168 35-214 79-254 (472)
135 KOG2055 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 146.6 20.1 192 1-209 220-417 (514)
136 KOG1034 Transcriptional repres 99.6 2.2E-14 4.7E-19 145.2 15.7 189 7-208 106-382 (385)
137 KOG4378 Nuclear protein COP1 [ 99.6 2.2E-14 4.8E-19 151.1 15.8 188 6-212 91-283 (673)
138 KOG4328 WD40 protein [Function 99.6 1.7E-14 3.7E-19 150.9 14.7 196 1-209 193-399 (498)
139 KOG4283 Transcription-coupled 99.6 2.8E-14 6.1E-19 142.6 15.1 166 32-211 38-221 (397)
140 KOG2055 WD40 repeat protein [G 99.6 2E-14 4.3E-19 150.6 14.7 219 1-234 264-492 (514)
141 KOG2048 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 149.1 22.2 195 1-212 32-236 (691)
142 KOG0321 WD40 repeat-containing 99.6 6.5E-14 1.4E-18 151.4 18.6 192 7-212 65-304 (720)
143 KOG0321 WD40 repeat-containing 99.6 3.2E-14 7E-19 153.7 16.1 151 2-153 108-302 (720)
144 KOG1274 WD40 repeat protein [G 99.6 6.8E-14 1.5E-18 156.3 18.9 172 1-182 103-285 (933)
145 KOG2096 WD40 repeat protein [G 99.6 3.3E-14 7.2E-19 143.3 14.7 176 5-186 198-392 (420)
146 KOG2394 WD40 protein DMR-N9 [G 99.6 5.9E-14 1.3E-18 149.2 16.2 171 4-177 183-384 (636)
147 KOG0639 Transducin-like enhanc 99.6 2.8E-14 6.1E-19 150.4 13.4 188 1-208 516-703 (705)
148 KOG2919 Guanine nucleotide-bin 99.6 7.8E-14 1.7E-18 140.9 15.8 196 4-213 121-331 (406)
149 KOG0294 WD40 repeat-containing 99.5 4.9E-13 1.1E-17 134.9 20.7 168 8-184 3-185 (362)
150 KOG0301 Phospholipase A2-activ 99.5 1.2E-13 2.6E-18 150.5 17.3 175 8-210 114-289 (745)
151 KOG0771 Prolactin regulatory e 99.5 7.5E-14 1.6E-18 145.2 14.7 204 1-210 151-366 (398)
152 KOG1063 RNA polymerase II elon 99.5 1.6E-13 3.4E-18 149.5 16.4 204 2-209 533-763 (764)
153 KOG1007 WD repeat protein TSSC 99.5 3E-13 6.4E-18 135.0 17.0 196 2-211 131-363 (370)
154 KOG0649 WD40 repeat protein [G 99.5 9.4E-13 2E-17 128.9 19.2 205 1-219 17-245 (325)
155 KOG0307 Vesicle coat complex C 99.5 2.9E-14 6.4E-19 162.4 10.0 195 2-211 124-329 (1049)
156 KOG1539 WD repeat protein [Gen 99.5 1.8E-12 3.8E-17 143.8 23.0 306 4-343 212-648 (910)
157 KOG1007 WD repeat protein TSSC 99.5 1.8E-13 3.9E-18 136.6 13.7 152 1-153 177-362 (370)
158 KOG1273 WD40 repeat protein [G 99.5 4.1E-13 8.8E-18 135.4 16.1 157 40-212 26-229 (405)
159 KOG0650 WD40 repeat nucleolar 99.5 1.7E-13 3.7E-18 147.2 14.0 190 3-208 409-679 (733)
160 KOG2106 Uncharacterized conser 99.5 2.3E-12 5E-17 136.4 22.1 173 2-185 254-465 (626)
161 KOG0646 WD40 repeat protein [G 99.5 4.6E-13 1E-17 140.6 16.5 170 2-177 131-329 (476)
162 KOG1408 WD40 repeat protein [F 99.5 4.3E-13 9.4E-18 146.1 16.0 195 8-216 394-678 (1080)
163 KOG2919 Guanine nucleotide-bin 99.5 7.4E-13 1.6E-17 133.9 16.1 181 1-185 165-358 (406)
164 COG2319 FOG: WD40 repeat [Gene 99.5 9.8E-12 2.1E-16 125.9 24.6 192 3-212 119-317 (466)
165 KOG4328 WD40 protein [Function 99.5 4.1E-13 8.9E-18 140.7 13.9 168 36-216 185-360 (498)
166 KOG0642 Cell-cycle nuclear pro 99.5 1.2E-12 2.7E-17 140.1 17.8 195 1-212 301-564 (577)
167 KOG0268 Sof1-like rRNA process 99.5 9.9E-14 2.2E-18 141.9 9.1 150 2-154 195-347 (433)
168 KOG2106 Uncharacterized conser 99.5 2.4E-12 5.3E-17 136.2 19.2 143 36-185 367-509 (626)
169 KOG1009 Chromatin assembly com 99.4 7.5E-13 1.6E-17 137.2 13.5 150 2-153 21-196 (434)
170 KOG2048 WD40 repeat protein [G 99.4 4.4E-12 9.5E-17 138.2 19.9 178 1-185 76-263 (691)
171 KOG2445 Nuclear pore complex c 99.4 1E-11 2.2E-16 125.1 20.4 189 6-208 73-317 (361)
172 COG2319 FOG: WD40 repeat [Gene 99.4 3.8E-11 8.3E-16 121.6 24.8 196 2-213 73-275 (466)
173 PF08662 eIF2A: Eukaryotic tra 99.4 9.8E-12 2.1E-16 121.3 18.6 148 2-154 13-181 (194)
174 PRK04922 tolB translocation pr 99.4 3.9E-11 8.5E-16 130.6 25.4 177 1-186 210-397 (433)
175 PRK02889 tolB translocation pr 99.4 3.3E-11 7.1E-16 131.1 24.5 187 1-196 202-399 (427)
176 KOG0290 Conserved WD40 repeat- 99.4 4.8E-12 1E-16 126.6 16.0 180 5-185 162-354 (364)
177 KOG1445 Tumor-specific antigen 99.4 2.8E-12 6.2E-17 138.3 15.0 198 2-213 635-848 (1012)
178 PF08662 eIF2A: Eukaryotic tra 99.4 1.8E-11 3.8E-16 119.5 19.0 155 42-209 10-179 (194)
179 KOG2139 WD40 repeat protein [G 99.4 1.2E-11 2.6E-16 126.8 18.0 198 1-206 105-317 (445)
180 PRK03629 tolB translocation pr 99.4 7.6E-11 1.7E-15 128.4 24.7 178 1-187 205-393 (429)
181 KOG1524 WD40 repeat-containing 99.4 4.9E-12 1.1E-16 134.6 14.4 189 7-205 76-282 (737)
182 KOG1524 WD40 repeat-containing 99.4 5.9E-12 1.3E-16 134.0 15.0 178 2-202 112-289 (737)
183 PRK05137 tolB translocation pr 99.4 9.3E-11 2E-15 127.7 24.7 176 1-185 208-394 (435)
184 PRK11028 6-phosphogluconolacto 99.4 1.5E-10 3.2E-15 121.0 25.3 197 1-211 41-260 (330)
185 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.5E-15 124.1 25.8 179 1-188 196-385 (417)
186 PRK11028 6-phosphogluconolacto 99.4 8.2E-11 1.8E-15 122.9 22.9 196 1-210 86-305 (330)
187 KOG1063 RNA polymerase II elon 99.4 1.9E-11 4E-16 133.6 18.2 196 2-211 324-650 (764)
188 KOG2110 Uncharacterized conser 99.4 6.4E-11 1.4E-15 121.9 20.4 146 6-153 97-249 (391)
189 KOG1188 WD40 repeat protein [G 99.4 6.2E-12 1.3E-16 128.1 12.9 148 51-211 41-198 (376)
190 PRK01742 tolB translocation pr 99.4 6.2E-11 1.4E-15 129.0 21.6 173 1-185 210-389 (429)
191 KOG1538 Uncharacterized conser 99.3 9.5E-12 2.1E-16 134.9 14.3 169 1-178 19-187 (1081)
192 KOG4227 WD40 repeat protein [G 99.3 1.9E-11 4E-16 126.2 15.6 152 2-156 64-229 (609)
193 KOG1310 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 131.4 14.3 152 1-152 57-231 (758)
194 KOG1523 Actin-related protein 99.3 2.5E-11 5.4E-16 122.9 15.2 195 1-209 17-236 (361)
195 KOG1517 Guanine nucleotide bin 99.3 2.6E-11 5.6E-16 137.3 16.8 194 2-210 1173-1382(1387)
196 KOG1517 Guanine nucleotide bin 99.3 4.2E-11 9.1E-16 135.6 18.0 197 2-211 1072-1289(1387)
197 KOG2110 Uncharacterized conser 99.3 1.7E-10 3.8E-15 118.7 21.0 184 8-211 58-250 (391)
198 KOG4227 WD40 repeat protein [G 99.3 4.2E-11 9E-16 123.6 16.0 165 36-212 55-228 (609)
199 KOG0322 G-protein beta subunit 99.3 2.1E-11 4.6E-16 120.7 13.0 185 7-208 26-322 (323)
200 KOG3881 Uncharacterized conser 99.3 9.4E-11 2E-15 121.3 17.9 194 6-216 115-327 (412)
201 KOG1034 Transcriptional repres 99.3 2.4E-11 5.3E-16 123.3 13.0 144 8-153 57-212 (385)
202 KOG1009 Chromatin assembly com 99.3 3.9E-11 8.4E-16 124.6 14.5 152 32-186 8-184 (434)
203 KOG0650 WD40 repeat nucleolar 99.3 2.8E-11 6E-16 130.4 12.9 188 1-206 528-732 (733)
204 PRK00178 tolB translocation pr 99.3 1.3E-09 2.9E-14 118.2 25.0 178 1-187 205-393 (430)
205 KOG1310 WD40 repeat protein [G 99.2 1.9E-11 4.2E-16 130.5 9.6 169 29-210 43-232 (758)
206 KOG0644 Uncharacterized conser 99.2 1.1E-11 2.3E-16 137.5 6.9 192 2-214 198-431 (1113)
207 PRK04792 tolB translocation pr 99.2 2.1E-09 4.6E-14 117.7 25.0 176 1-185 224-410 (448)
208 KOG1587 Cytoplasmic dynein int 99.2 4.2E-10 9E-15 125.0 18.5 198 2-212 250-475 (555)
209 KOG4497 Uncharacterized conser 99.2 6.8E-11 1.5E-15 120.1 10.9 138 1-142 15-153 (447)
210 KOG2111 Uncharacterized conser 99.2 2.7E-09 5.8E-14 108.3 22.3 178 16-212 75-259 (346)
211 PRK01742 tolB translocation pr 99.2 3.3E-10 7.1E-15 123.3 17.0 169 1-178 254-426 (429)
212 KOG1523 Actin-related protein 99.2 2.4E-10 5.3E-15 115.8 13.8 158 37-207 10-174 (361)
213 KOG0322 G-protein beta subunit 99.2 1.2E-10 2.6E-15 115.4 11.0 143 8-151 167-322 (323)
214 KOG1272 WD40-repeat-containing 99.2 8.1E-11 1.8E-15 123.9 9.4 208 2-214 217-426 (545)
215 KOG0649 WD40 repeat protein [G 99.1 5.7E-09 1.2E-13 102.7 20.8 144 3-154 123-276 (325)
216 KOG2111 Uncharacterized conser 99.1 7.8E-09 1.7E-13 105.0 21.8 147 6-154 104-258 (346)
217 KOG0974 WD-repeat protein WDR6 99.1 1.7E-09 3.7E-14 123.1 18.6 189 4-212 97-291 (967)
218 KOG2394 WD40 protein DMR-N9 [G 99.1 4.2E-10 9.1E-15 120.3 12.9 94 37-132 290-384 (636)
219 KOG3881 Uncharacterized conser 99.1 9.7E-10 2.1E-14 113.9 15.1 167 7-177 162-341 (412)
220 KOG1240 Protein kinase contain 99.1 2.9E-09 6.3E-14 122.6 20.4 204 4-219 1059-1283(1431)
221 KOG4547 WD40 repeat-containing 99.1 5.2E-09 1.1E-13 113.3 21.0 199 3-212 2-223 (541)
222 PRK03629 tolB translocation pr 99.1 3E-09 6.6E-14 115.9 18.7 168 1-177 249-427 (429)
223 PRK05137 tolB translocation pr 99.1 1.9E-08 4E-13 109.7 24.7 161 17-185 183-351 (435)
224 KOG0771 Prolactin regulatory e 99.1 4.7E-10 1E-14 117.1 10.8 158 41-213 148-315 (398)
225 KOG2321 WD40 repeat protein [G 99.1 6.8E-09 1.5E-13 112.0 18.1 196 2-212 59-305 (703)
226 KOG1538 Uncharacterized conser 99.0 7.8E-09 1.7E-13 112.8 18.4 188 1-209 60-293 (1081)
227 PRK04922 tolB translocation pr 99.0 1E-08 2.2E-13 111.8 19.7 168 1-177 254-432 (433)
228 KOG1587 Cytoplasmic dynein int 99.0 4.9E-09 1.1E-13 116.5 16.5 188 7-209 306-516 (555)
229 KOG0644 Uncharacterized conser 99.0 3.6E-10 7.9E-15 125.6 7.0 231 74-341 183-424 (1113)
230 KOG1963 WD40 repeat protein [G 99.0 6.4E-09 1.4E-13 116.7 16.7 220 1-225 212-454 (792)
231 PRK01029 tolB translocation pr 99.0 6.6E-08 1.4E-12 105.5 23.9 195 1-210 191-404 (428)
232 PRK04043 tolB translocation pr 99.0 1.3E-07 2.8E-12 102.9 25.9 191 1-202 194-402 (419)
233 TIGR02800 propeller_TolB tol-p 99.0 9.5E-08 2.1E-12 102.7 23.9 177 17-210 171-355 (417)
234 PRK02889 tolB translocation pr 99.0 5.3E-08 1.2E-12 106.1 21.9 179 17-210 177-361 (427)
235 KOG0642 Cell-cycle nuclear pro 99.0 4.9E-09 1.1E-13 112.9 12.9 118 36-154 293-428 (577)
236 PRK01029 tolB translocation pr 99.0 4.6E-08 9.9E-13 106.7 20.8 174 1-178 237-425 (428)
237 PF02239 Cytochrom_D1: Cytochr 99.0 1.9E-07 4E-12 100.1 24.8 176 6-187 5-191 (369)
238 KOG2321 WD40 repeat protein [G 98.9 2.3E-08 4.9E-13 108.0 15.9 170 9-185 148-331 (703)
239 KOG0280 Uncharacterized conser 98.9 1.5E-08 3.3E-13 102.0 13.4 182 2-185 129-319 (339)
240 KOG0974 WD-repeat protein WDR6 98.9 9.5E-09 2.1E-13 117.1 13.2 147 3-154 142-290 (967)
241 KOG1334 WD40 repeat protein [G 98.9 1.5E-08 3.3E-13 107.6 13.1 296 2-348 150-469 (559)
242 KOG1963 WD40 repeat protein [G 98.9 7.9E-08 1.7E-12 108.1 19.4 197 2-213 168-379 (792)
243 KOG1240 Protein kinase contain 98.9 1.9E-08 4.1E-13 116.1 14.8 184 21-219 1034-1235(1431)
244 KOG2139 WD40 repeat protein [G 98.9 1.1E-07 2.4E-12 98.2 18.5 204 2-213 148-387 (445)
245 PRK00178 tolB translocation pr 98.9 4.9E-07 1.1E-11 98.2 24.3 161 17-185 180-348 (430)
246 PF10282 Lactonase: Lactonase, 98.8 2.7E-06 5.8E-11 90.1 28.6 197 2-209 94-322 (345)
247 PRK04792 tolB translocation pr 98.8 5.8E-07 1.3E-11 98.7 22.6 161 17-185 199-367 (448)
248 PF02239 Cytochrom_D1: Cytochr 98.8 1.7E-06 3.6E-11 92.7 24.9 210 2-219 44-267 (369)
249 KOG1354 Serine/threonine prote 98.8 9.6E-08 2.1E-12 98.0 14.2 195 2-210 33-302 (433)
250 KOG4532 WD40-like repeat conta 98.8 4.7E-07 1E-11 90.5 18.1 200 5-215 83-288 (344)
251 KOG1064 RAVE (regulator of V-A 98.8 2.6E-08 5.5E-13 118.3 10.2 185 3-217 2217-2406(2439)
252 PF10282 Lactonase: Lactonase, 98.8 6.6E-06 1.4E-10 87.1 27.7 198 1-210 43-276 (345)
253 KOG4497 Uncharacterized conser 98.7 3E-07 6.5E-12 94.0 15.6 146 2-150 56-238 (447)
254 KOG0280 Uncharacterized conser 98.7 3.5E-07 7.6E-12 92.4 15.9 167 8-178 87-264 (339)
255 KOG2315 Predicted translation 98.7 1.2E-06 2.5E-11 94.9 20.3 179 13-209 191-390 (566)
256 COG2706 3-carboxymuconate cycl 98.7 1E-05 2.2E-10 84.0 25.9 185 1-187 46-263 (346)
257 COG4946 Uncharacterized protei 98.7 3.2E-06 6.9E-11 90.0 21.6 170 5-185 331-506 (668)
258 KOG1064 RAVE (regulator of V-A 98.6 6.4E-08 1.4E-12 115.0 9.2 178 1-201 2258-2438(2439)
259 PLN02919 haloacid dehalogenase 98.6 8E-06 1.7E-10 98.3 26.0 194 2-212 631-891 (1057)
260 KOG4547 WD40 repeat-containing 98.6 3.8E-06 8.2E-11 91.5 20.6 145 5-153 69-221 (541)
261 KOG0309 Conserved WD40 repeat- 98.6 1.4E-07 3.1E-12 104.3 9.5 202 2-209 122-339 (1081)
262 KOG3914 WD repeat protein WDR4 98.5 1E-06 2.3E-11 92.1 13.9 151 2-157 70-228 (390)
263 KOG1334 WD40 repeat protein [G 98.5 2.8E-07 6E-12 98.2 9.4 167 35-213 140-316 (559)
264 KOG1409 Uncharacterized conser 98.5 2.8E-06 6E-11 87.5 15.4 192 4-210 34-271 (404)
265 KOG3914 WD repeat protein WDR4 98.5 1.5E-06 3.1E-11 91.0 13.1 163 41-219 66-233 (390)
266 KOG1354 Serine/threonine prote 98.5 1.4E-06 3E-11 89.7 12.5 199 7-210 99-360 (433)
267 KOG1275 PAB-dependent poly(A) 98.4 4.7E-06 1E-10 94.5 16.7 189 5-212 146-345 (1118)
268 COG4946 Uncharacterized protei 98.4 3E-05 6.4E-10 82.9 21.3 191 3-210 275-478 (668)
269 KOG1409 Uncharacterized conser 98.4 1.6E-06 3.4E-11 89.3 10.9 102 10-113 169-272 (404)
270 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00014 3.1E-09 77.2 25.9 199 2-216 53-337 (352)
271 PLN02919 haloacid dehalogenase 98.4 2.3E-05 4.9E-10 94.5 22.0 153 2-155 690-891 (1057)
272 KOG0309 Conserved WD40 repeat- 98.4 1.4E-06 3.1E-11 96.6 10.4 198 2-213 32-236 (1081)
273 COG2706 3-carboxymuconate cycl 98.3 0.00021 4.6E-09 74.4 24.6 184 1-187 95-310 (346)
274 COG0823 TolB Periplasmic compo 98.3 1.9E-05 4.1E-10 86.1 17.8 197 1-205 199-407 (425)
275 KOG2315 Predicted translation 98.3 3.7E-05 8.1E-10 83.5 17.9 150 17-178 252-411 (566)
276 COG5354 Uncharacterized protei 98.2 4.9E-05 1.1E-09 81.9 17.3 184 12-210 198-396 (561)
277 PRK04043 tolB translocation pr 98.2 0.00041 9E-09 75.7 24.7 160 16-186 169-337 (419)
278 KOG4714 Nucleoporin [Nuclear s 98.2 4.7E-06 1E-10 83.1 8.5 75 38-112 180-255 (319)
279 PF15492 Nbas_N: Neuroblastoma 98.2 0.00011 2.4E-09 74.5 18.5 153 1-154 50-261 (282)
280 KOG4532 WD40-like repeat conta 98.2 4.5E-05 9.9E-10 76.6 15.3 155 52-218 86-242 (344)
281 KOG4714 Nucleoporin [Nuclear s 98.2 2.9E-06 6.3E-11 84.6 6.6 144 52-209 103-254 (319)
282 KOG2695 WD40 repeat protein [G 98.2 4E-06 8.6E-11 86.4 7.8 161 44-217 218-384 (425)
283 PF08450 SGL: SMP-30/Gluconola 98.2 0.00063 1.4E-08 68.1 23.6 176 2-185 7-201 (246)
284 COG5170 CDC55 Serine/threonine 98.2 1.5E-05 3.2E-10 81.3 11.4 197 2-212 34-312 (460)
285 PF15492 Nbas_N: Neuroblastoma 98.2 0.00086 1.9E-08 68.1 23.7 202 2-219 5-269 (282)
286 KOG2695 WD40 repeat protein [G 98.1 7.4E-06 1.6E-10 84.5 8.2 140 10-154 228-378 (425)
287 KOG2114 Vacuolar assembly/sort 98.1 0.00022 4.7E-09 81.1 19.8 176 1-180 30-227 (933)
288 KOG4190 Uncharacterized conser 98.1 1.1E-05 2.4E-10 87.1 9.2 174 29-207 728-915 (1034)
289 KOG2314 Translation initiation 98.1 0.00012 2.6E-09 79.6 16.8 197 1-210 256-526 (698)
290 PF08450 SGL: SMP-30/Gluconola 98.1 0.0013 2.7E-08 66.0 23.4 162 6-176 51-233 (246)
291 KOG1832 HIV-1 Vpr-binding prot 98.1 1.8E-06 3.9E-11 97.3 2.5 201 1-237 1108-1314(1516)
292 KOG2041 WD40 repeat protein [G 98.0 1.4E-05 3.1E-10 88.5 8.7 151 1-153 21-187 (1189)
293 PF11768 DUF3312: Protein of u 98.0 0.00034 7.3E-09 77.0 19.3 112 42-154 210-331 (545)
294 PF04762 IKI3: IKI3 family; I 98.0 0.00027 5.8E-09 84.1 19.7 180 2-185 83-322 (928)
295 KOG2041 WD40 repeat protein [G 98.0 2.9E-05 6.3E-10 86.2 10.6 145 35-184 12-173 (1189)
296 PF04762 IKI3: IKI3 family; I 98.0 0.0002 4.3E-09 85.2 18.4 173 1-179 127-360 (928)
297 KOG4190 Uncharacterized conser 98.0 4E-05 8.6E-10 82.9 11.2 146 5-155 746-909 (1034)
298 PF07433 DUF1513: Protein of u 98.0 0.0017 3.7E-08 67.5 22.6 198 2-214 12-252 (305)
299 KOG2066 Vacuolar assembly/sort 98.0 0.00017 3.6E-09 81.4 15.9 135 5-155 48-190 (846)
300 PF00400 WD40: WD domain, G-be 98.0 2.8E-05 6.1E-10 55.0 6.4 37 73-109 3-39 (39)
301 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.0026 5.6E-08 67.8 23.4 143 5-153 11-176 (352)
302 PF13360 PQQ_2: PQQ-like domai 97.9 0.0013 2.7E-08 64.8 19.7 185 5-212 35-233 (238)
303 COG5354 Uncharacterized protei 97.9 0.00099 2.1E-08 72.1 19.6 193 1-210 78-307 (561)
304 TIGR03300 assembly_YfgL outer 97.9 0.0014 2.9E-08 69.9 21.0 142 5-155 64-211 (377)
305 PF07433 DUF1513: Protein of u 97.8 0.0053 1.1E-07 63.8 23.2 171 1-179 57-269 (305)
306 PF00400 WD40: WD domain, G-be 97.8 5.6E-05 1.2E-09 53.5 6.2 38 27-66 2-39 (39)
307 KOG1008 Uncharacterized conser 97.8 4.9E-06 1.1E-10 91.4 0.8 195 6-211 70-277 (783)
308 PRK02888 nitrous-oxide reducta 97.8 0.0025 5.4E-08 71.8 21.7 208 3-213 201-489 (635)
309 KOG1645 RING-finger-containing 97.8 0.00076 1.6E-08 71.2 15.8 135 1-139 200-347 (463)
310 KOG2066 Vacuolar assembly/sort 97.8 0.001 2.2E-08 75.3 17.7 140 5-153 82-234 (846)
311 KOG1912 WD40 repeat protein [G 97.8 0.0006 1.3E-08 76.8 15.6 187 8-209 81-304 (1062)
312 PF13360 PQQ_2: PQQ-like domai 97.8 0.0021 4.6E-08 63.1 18.3 137 14-155 1-143 (238)
313 COG5170 CDC55 Serine/threonine 97.7 0.0002 4.4E-09 73.2 10.6 125 35-162 170-319 (460)
314 TIGR03300 assembly_YfgL outer 97.7 0.0026 5.5E-08 67.8 19.5 139 7-155 191-341 (377)
315 KOG1275 PAB-dependent poly(A) 97.7 0.00028 6E-09 80.6 11.8 143 4-152 185-342 (1118)
316 KOG1912 WD40 repeat protein [G 97.7 0.0009 2E-08 75.4 15.1 147 2-152 23-186 (1062)
317 PF03178 CPSF_A: CPSF A subuni 97.6 0.0023 4.9E-08 67.0 17.4 178 16-210 2-203 (321)
318 PF11768 DUF3312: Protein of u 97.6 0.0015 3.2E-08 72.1 16.2 111 82-209 206-329 (545)
319 KOG2314 Translation initiation 97.6 0.0014 3E-08 71.6 15.4 174 2-185 218-411 (698)
320 KOG1645 RING-finger-containing 97.6 0.00056 1.2E-08 72.2 11.9 115 62-177 175-291 (463)
321 KOG1920 IkappaB kinase complex 97.6 0.0032 6.9E-08 74.2 18.8 179 2-184 76-306 (1265)
322 KOG0882 Cyclophilin-related pe 97.5 0.0024 5.1E-08 68.4 15.6 201 3-207 62-314 (558)
323 KOG3621 WD40 repeat-containing 97.4 0.00074 1.6E-08 75.5 10.4 147 2-152 41-197 (726)
324 PF08553 VID27: VID27 cytoplas 97.4 0.005 1.1E-07 71.5 17.4 134 14-151 502-646 (794)
325 COG3391 Uncharacterized conser 97.4 0.055 1.2E-06 58.3 23.9 178 2-185 81-270 (381)
326 PF06977 SdiA-regulated: SdiA- 97.3 0.021 4.5E-07 58.1 19.0 181 1-185 28-239 (248)
327 PRK02888 nitrous-oxide reducta 97.3 0.011 2.5E-07 66.6 18.4 193 4-210 139-405 (635)
328 PF04053 Coatomer_WDAD: Coatom 97.3 0.0037 8E-08 68.7 13.8 159 1-178 39-207 (443)
329 PRK11138 outer membrane biogen 97.2 0.017 3.7E-07 62.2 18.3 144 6-155 120-277 (394)
330 COG0823 TolB Periplasmic compo 97.2 0.0065 1.4E-07 66.5 15.0 138 1-142 244-389 (425)
331 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.3E-06 56.7 23.6 60 123-184 217-276 (410)
332 KOG1920 IkappaB kinase complex 97.1 0.013 2.8E-07 69.4 16.6 110 43-155 201-325 (1265)
333 KOG3617 WD40 and TPR repeat-co 97.1 0.0025 5.4E-08 72.5 10.4 106 1-111 22-131 (1416)
334 PRK11138 outer membrane biogen 97.1 0.023 4.9E-07 61.2 17.4 136 6-151 256-393 (394)
335 KOG1832 HIV-1 Vpr-binding prot 97.1 0.00056 1.2E-08 77.9 4.9 165 29-216 1094-1262(1516)
336 KOG1008 Uncharacterized conser 97.1 0.00017 3.8E-09 79.6 0.8 158 38-212 57-229 (783)
337 KOG0882 Cyclophilin-related pe 97.0 0.002 4.4E-08 68.9 8.5 159 36-209 8-174 (558)
338 PF08553 VID27: VID27 cytoplas 97.0 0.019 4.1E-07 66.9 17.1 129 52-185 495-636 (794)
339 KOG3621 WD40 repeat-containing 97.0 0.0052 1.1E-07 69.0 11.7 121 32-153 28-155 (726)
340 KOG4640 Anaphase-promoting com 97.0 0.0029 6.3E-08 70.2 9.6 91 39-132 22-115 (665)
341 KOG4640 Anaphase-promoting com 97.0 0.0027 5.8E-08 70.5 8.8 87 2-90 28-114 (665)
342 PF00780 CNH: CNH domain; Int 96.9 0.34 7.3E-06 49.1 23.0 143 4-154 5-167 (275)
343 PF02897 Peptidase_S9_N: Proly 96.8 0.49 1.1E-05 51.1 25.2 150 2-155 131-312 (414)
344 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.09 1.9E-06 53.3 17.3 99 6-107 63-161 (354)
345 COG3391 Uncharacterized conser 96.8 0.16 3.4E-06 54.9 20.8 151 1-154 122-285 (381)
346 KOG2114 Vacuolar assembly/sort 96.8 0.14 3E-06 59.1 20.7 148 7-156 78-247 (933)
347 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.093 2E-06 46.7 15.4 104 84-204 2-109 (111)
348 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.096 2.1E-06 46.6 15.2 99 43-148 8-110 (111)
349 PF03178 CPSF_A: CPSF A subuni 96.6 0.25 5.4E-06 51.6 20.1 162 6-173 42-230 (321)
350 cd00216 PQQ_DH Dehydrogenases 96.5 0.17 3.7E-06 56.4 19.2 147 5-157 227-429 (488)
351 PF06977 SdiA-regulated: SdiA- 96.5 0.2 4.3E-06 51.0 17.9 143 38-182 22-185 (248)
352 PF00780 CNH: CNH domain; Int 96.4 0.18 3.9E-06 51.1 17.4 122 52-177 9-148 (275)
353 smart00320 WD40 WD40 repeats. 96.4 0.0091 2E-07 39.0 5.3 36 74-109 5-40 (40)
354 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.13 2.9E-06 52.1 15.5 113 44-159 17-130 (354)
355 KOG2395 Protein involved in va 96.3 0.12 2.7E-06 56.8 15.9 132 48-185 344-489 (644)
356 PRK13616 lipoprotein LpqB; Pro 96.3 0.22 4.8E-06 56.9 18.6 163 1-177 356-550 (591)
357 PF04053 Coatomer_WDAD: Coatom 96.2 0.11 2.4E-06 57.3 15.2 136 6-152 117-262 (443)
358 PF02333 Phytase: Phytase; In 96.2 0.8 1.7E-05 49.4 21.1 195 4-210 66-291 (381)
359 smart00320 WD40 WD40 repeats. 96.2 0.016 3.5E-07 37.7 5.5 38 27-66 3-40 (40)
360 PRK13616 lipoprotein LpqB; Pro 96.1 0.39 8.4E-06 54.9 19.5 135 38-182 350-511 (591)
361 PF06433 Me-amine-dh_H: Methyl 96.0 0.47 1E-05 50.3 17.9 195 2-216 102-327 (342)
362 PF14583 Pectate_lyase22: Olig 95.9 0.67 1.4E-05 49.9 18.7 182 1-185 42-255 (386)
363 cd00216 PQQ_DH Dehydrogenases 95.9 0.7 1.5E-05 51.5 19.9 149 6-157 61-269 (488)
364 PF05096 Glu_cyclase_2: Glutam 95.8 1.2 2.5E-05 45.8 19.4 176 28-210 35-215 (264)
365 COG3386 Gluconolactonase [Carb 95.7 1.6 3.4E-05 46.0 20.6 155 18-177 87-264 (307)
366 PF08596 Lgl_C: Lethal giant l 95.7 0.44 9.6E-06 51.8 16.9 180 5-185 96-324 (395)
367 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 2.2 4.7E-05 48.2 22.7 201 6-213 69-337 (527)
368 PHA02713 hypothetical protein; 95.6 0.42 9E-06 54.3 17.1 144 5-153 303-489 (557)
369 PF10647 Gmad1: Lipoprotein Lp 95.6 1.9 4.1E-05 43.9 20.2 143 39-185 25-183 (253)
370 PF02897 Peptidase_S9_N: Proly 95.5 1.3 2.8E-05 47.8 20.0 113 40-154 126-262 (414)
371 KOG2444 WD40 repeat protein [G 95.5 0.024 5.2E-07 56.3 5.7 102 52-153 72-178 (238)
372 KOG3617 WD40 and TPR repeat-co 95.5 0.032 7E-07 63.9 7.2 109 40-152 18-131 (1416)
373 KOG3630 Nuclear pore complex, 95.4 0.15 3.3E-06 60.4 12.4 148 37-186 100-262 (1405)
374 PF05096 Glu_cyclase_2: Glutam 95.3 4 8.8E-05 41.9 22.6 169 4-180 54-243 (264)
375 PF05694 SBP56: 56kDa selenium 95.2 1.4 3.1E-05 48.1 18.2 196 5-212 86-345 (461)
376 KOG2395 Protein involved in va 95.1 0.2 4.2E-06 55.3 11.6 138 10-152 350-500 (644)
377 KOG2079 Vacuolar assembly/sort 95.0 0.1 2.2E-06 61.5 9.6 98 52-151 101-202 (1206)
378 TIGR03074 PQQ_membr_DH membran 95.0 5.4 0.00012 47.1 23.9 112 6-120 194-353 (764)
379 KOG2444 WD40 repeat protein [G 94.9 0.073 1.6E-06 53.0 7.1 104 6-111 70-177 (238)
380 KOG2079 Vacuolar assembly/sort 94.9 0.097 2.1E-06 61.6 8.9 81 92-175 98-180 (1206)
381 PF00930 DPPIV_N: Dipeptidyl p 94.8 2.9 6.2E-05 44.5 19.6 146 37-185 183-345 (353)
382 KOG4441 Proteins containing BT 94.8 1.1 2.4E-05 51.1 17.2 145 6-154 285-454 (571)
383 COG3490 Uncharacterized protei 94.6 1.9 4.2E-05 44.5 16.5 194 9-214 83-315 (366)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.4 4.7 0.0001 45.5 20.9 142 17-158 272-496 (527)
385 PF12234 Rav1p_C: RAVE protein 94.3 1.2 2.6E-05 51.1 15.7 111 84-208 32-155 (631)
386 KOG1897 Damage-specific DNA bi 94.2 3.3 7.1E-05 49.0 19.1 163 18-184 752-930 (1096)
387 PF08596 Lgl_C: Lethal giant l 94.2 1.1 2.4E-05 48.7 14.9 75 77-152 82-173 (395)
388 KOG4441 Proteins containing BT 94.2 1.3 2.9E-05 50.4 16.0 145 5-154 332-501 (571)
389 PF06433 Me-amine-dh_H: Methyl 94.1 3.4 7.5E-05 43.9 17.7 156 7-164 148-331 (342)
390 PF15390 DUF4613: Domain of un 94.1 0.98 2.1E-05 50.7 14.0 138 39-187 21-175 (671)
391 COG3204 Uncharacterized protei 94.0 4.8 0.0001 41.9 17.9 153 1-154 92-265 (316)
392 KOG4499 Ca2+-binding protein R 94.0 1.3 2.9E-05 44.5 13.4 94 39-132 159-263 (310)
393 PF08728 CRT10: CRT10; InterP 93.9 1.7 3.7E-05 50.3 16.0 150 52-208 51-245 (717)
394 COG3204 Uncharacterized protei 93.8 2.8 6.2E-05 43.5 15.9 116 38-155 86-213 (316)
395 KOG3630 Nuclear pore complex, 93.7 0.31 6.6E-06 57.9 9.8 135 3-139 109-260 (1405)
396 PHA03098 kelch-like protein; P 93.6 2.3 4.9E-05 47.7 16.5 141 6-154 295-466 (534)
397 PF14583 Pectate_lyase22: Olig 93.6 8.3 0.00018 41.7 19.7 174 17-195 169-378 (386)
398 COG3490 Uncharacterized protei 93.6 2.6 5.5E-05 43.7 14.9 128 44-185 42-179 (366)
399 COG3386 Gluconolactonase [Carb 93.5 2.1 4.5E-05 45.0 14.8 123 16-141 143-274 (307)
400 PF00930 DPPIV_N: Dipeptidyl p 93.5 1.5 3.3E-05 46.6 14.1 140 2-142 191-347 (353)
401 KOG1916 Nuclear protein, conta 93.4 0.065 1.4E-06 62.0 3.7 105 16-152 153-265 (1283)
402 TIGR02604 Piru_Ver_Nterm putat 93.4 3.5 7.5E-05 44.2 16.7 139 40-185 16-201 (367)
403 PF14870 PSII_BNR: Photosynthe 93.0 14 0.0003 38.9 21.3 144 36-185 143-293 (302)
404 PRK10115 protease 2; Provision 92.9 23 0.0005 41.4 26.0 106 2-110 134-254 (686)
405 PF05694 SBP56: 56kDa selenium 92.9 2 4.3E-05 47.0 13.7 127 15-141 221-392 (461)
406 PF12894 Apc4_WD40: Anaphase-p 92.8 0.36 7.8E-06 36.3 5.7 35 80-115 10-44 (47)
407 PF12894 Apc4_WD40: Anaphase-p 92.5 0.43 9.3E-06 35.9 5.8 33 121-153 10-42 (47)
408 PF12234 Rav1p_C: RAVE protein 92.4 3.1 6.6E-05 47.8 15.1 107 43-152 35-156 (631)
409 COG5276 Uncharacterized conser 92.4 16 0.00035 38.2 22.5 141 37-185 86-231 (370)
410 PF15390 DUF4613: Domain of un 92.2 4.5 9.7E-05 45.7 15.5 115 38-153 57-187 (671)
411 KOG2247 WD40 repeat-containing 92.2 0.018 3.8E-07 62.7 -2.8 133 2-139 42-176 (615)
412 KOG2280 Vacuolar assembly/sort 91.9 3.6 7.8E-05 47.5 14.6 49 18-70 66-114 (829)
413 PHA02713 hypothetical protein; 91.8 1.5 3.3E-05 49.8 12.0 142 5-155 351-536 (557)
414 PF13449 Phytase-like: Esteras 91.8 13 0.00029 39.1 18.4 148 36-185 18-232 (326)
415 TIGR02604 Piru_Ver_Nterm putat 91.3 7.3 0.00016 41.7 16.1 136 1-141 20-202 (367)
416 PF10168 Nup88: Nuclear pore c 91.2 5.8 0.00012 46.5 16.0 80 82-162 85-189 (717)
417 TIGR03548 mutarot_permut cycli 90.6 15 0.00031 38.4 17.2 135 5-143 72-233 (323)
418 PF10647 Gmad1: Lipoprotein Lp 90.5 7.5 0.00016 39.5 14.5 101 83-185 25-129 (253)
419 PHA02790 Kelch-like protein; P 90.5 13 0.00028 41.4 17.5 139 6-154 272-425 (480)
420 PLN02153 epithiospecifier prot 90.2 22 0.00047 37.5 18.2 101 51-154 87-227 (341)
421 PF14781 BBS2_N: Ciliary BBSom 90.2 8.6 0.00019 35.6 12.9 110 4-118 8-132 (136)
422 PHA03098 kelch-like protein; P 90.0 7.9 0.00017 43.4 15.5 143 5-154 342-513 (534)
423 PRK10115 protease 2; Provision 89.9 43 0.00093 39.2 21.8 112 38-152 127-255 (686)
424 TIGR03074 PQQ_membr_DH membran 89.6 27 0.00058 41.4 19.8 147 6-155 260-480 (764)
425 PF10214 Rrn6: RNA polymerase 89.4 20 0.00044 42.4 18.9 114 38-154 146-278 (765)
426 COG3823 Glutamine cyclotransfe 88.8 16 0.00035 36.4 14.4 101 5-114 55-161 (262)
427 TIGR03118 PEPCTERM_chp_1 conse 88.6 35 0.00076 35.9 20.5 204 1-212 29-282 (336)
428 PLN00033 photosystem II stabil 88.4 29 0.00062 37.9 17.8 112 32-149 275-396 (398)
429 PRK13684 Ycf48-like protein; P 88.4 37 0.0008 35.9 21.7 144 36-185 171-320 (334)
430 KOG1896 mRNA cleavage and poly 88.4 21 0.00045 43.6 17.4 185 13-210 1001-1214(1366)
431 PF10168 Nup88: Nuclear pore c 87.7 20 0.00043 42.2 16.9 73 39-113 86-181 (717)
432 PF10313 DUF2415: Uncharacteri 87.6 2.1 4.6E-05 31.6 5.8 31 123-153 1-34 (43)
433 PF07569 Hira: TUP1-like enhan 86.8 3.7 8.1E-05 40.9 9.1 65 89-154 18-97 (219)
434 PF14781 BBS2_N: Ciliary BBSom 86.7 15 0.00032 34.0 12.0 109 43-154 4-127 (136)
435 PF14727 PHTB1_N: PTHB1 N-term 86.7 55 0.0012 36.0 23.1 145 5-151 36-203 (418)
436 KOG2377 Uncharacterized conser 85.7 9.6 0.00021 41.9 11.8 133 6-141 33-172 (657)
437 KOG2377 Uncharacterized conser 85.6 21 0.00046 39.3 14.3 137 41-183 26-169 (657)
438 PLN02153 epithiospecifier prot 84.6 44 0.00096 35.1 16.5 144 6-154 86-286 (341)
439 PF10214 Rrn6: RNA polymerase 84.4 64 0.0014 38.3 19.2 141 36-178 78-257 (765)
440 PF10313 DUF2415: Uncharacteri 84.3 3.8 8.3E-05 30.3 5.7 33 38-70 1-35 (43)
441 PRK13684 Ycf48-like protein; P 84.0 38 0.00083 35.8 15.7 143 3-152 181-331 (334)
442 KOG1916 Nuclear protein, conta 83.7 0.3 6.4E-06 56.8 -0.4 110 4-116 193-328 (1283)
443 KOG4499 Ca2+-binding protein R 83.6 55 0.0012 33.4 15.2 131 38-176 109-262 (310)
444 COG5167 VID27 Protein involved 83.2 17 0.00037 40.6 12.5 141 7-153 480-633 (776)
445 COG5167 VID27 Protein involved 83.1 13 0.00029 41.4 11.7 131 47-184 477-620 (776)
446 PHA02790 Kelch-like protein; P 83.0 24 0.00052 39.3 14.3 139 5-154 318-472 (480)
447 KOG1898 Splicing factor 3b, su 83.0 97 0.0021 37.7 19.1 158 17-177 854-1029(1205)
448 PF03022 MRJP: Major royal jel 82.8 64 0.0014 33.5 20.3 166 17-183 35-251 (287)
449 KOG1900 Nuclear pore complex, 82.5 15 0.00031 45.2 12.7 140 12-153 95-273 (1311)
450 PF07569 Hira: TUP1-like enhan 82.4 7.1 0.00015 38.9 8.9 65 46-112 19-96 (219)
451 TIGR03547 muta_rot_YjhT mutatr 82.1 70 0.0015 33.5 18.5 40 60-102 168-210 (346)
452 COG1520 FOG: WD40-like repeat 81.6 49 0.0011 35.2 15.6 144 7-155 69-220 (370)
453 PF14761 HPS3_N: Hermansky-Pud 81.0 26 0.00055 35.0 11.9 101 52-153 30-164 (215)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 80.5 18 0.00039 39.7 11.8 44 77-120 303-346 (415)
455 PF10395 Utp8: Utp8 family; I 79.7 1.3E+02 0.0028 35.1 20.4 109 2-111 35-159 (670)
456 PF14870 PSII_BNR: Photosynthe 79.3 87 0.0019 32.9 21.0 118 77-198 140-260 (302)
457 TIGR03032 conserved hypothetic 79.1 93 0.002 33.0 17.2 88 87-178 208-315 (335)
458 PF14761 HPS3_N: Hermansky-Pud 78.9 74 0.0016 31.8 15.2 140 4-151 25-213 (215)
459 PLN02193 nitrile-specifier pro 78.5 81 0.0018 35.0 16.5 143 6-154 229-412 (470)
460 PF08149 BING4CT: BING4CT (NUC 78.0 1.1 2.3E-05 37.5 1.1 23 251-287 1-23 (80)
461 TIGR03547 muta_rot_YjhT mutatr 78.0 48 0.0011 34.7 14.0 12 16-27 168-179 (346)
462 TIGR03118 PEPCTERM_chp_1 conse 77.8 99 0.0022 32.7 15.9 147 8-155 102-282 (336)
463 TIGR03548 mutarot_permut cycli 77.7 45 0.00099 34.7 13.5 64 5-71 123-197 (323)
464 PLN02193 nitrile-specifier pro 77.5 1.1E+02 0.0024 33.9 17.2 100 50-154 229-353 (470)
465 KOG1897 Damage-specific DNA bi 77.5 1.8E+02 0.0038 35.4 21.6 102 52-153 501-614 (1096)
466 KOG4460 Nuclear pore complex, 77.4 37 0.00081 38.1 12.8 73 83-155 105-201 (741)
467 PF11715 Nup160: Nucleoporin N 77.2 11 0.00025 42.3 9.5 69 52-120 160-257 (547)
468 PF12768 Rax2: Cortical protei 77.0 46 0.001 34.6 13.0 112 16-131 16-145 (281)
469 COG4590 ABC-type uncharacteriz 73.3 14 0.0003 40.7 8.1 151 2-155 228-389 (733)
470 TIGR02276 beta_rpt_yvtn 40-res 72.3 18 0.00038 25.3 6.2 40 91-130 1-41 (42)
471 COG1520 FOG: WD40-like repeat 72.1 1.4E+02 0.003 31.7 16.5 146 8-156 113-272 (370)
472 PF08728 CRT10: CRT10; InterP 71.8 26 0.00057 40.9 10.5 104 6-110 114-245 (717)
473 PF14655 RAB3GAP2_N: Rab3 GTPa 71.8 22 0.00048 39.0 9.6 70 2-71 315-401 (415)
474 PF08801 Nucleoporin_N: Nup133 71.8 86 0.0019 34.0 14.3 31 123-153 190-220 (422)
475 PRK14131 N-acetylneuraminic ac 71.5 1.4E+02 0.0029 32.0 15.6 11 61-71 190-200 (376)
476 PF04841 Vps16_N: Vps16, N-ter 71.5 1.6E+02 0.0035 32.1 19.6 71 81-153 216-288 (410)
477 COG5290 IkappaB kinase complex 70.1 36 0.00077 40.0 10.8 92 85-180 250-349 (1243)
478 TIGR02276 beta_rpt_yvtn 40-res 68.3 23 0.0005 24.7 6.1 31 4-34 1-32 (42)
479 PF05935 Arylsulfotrans: Aryls 68.2 2E+02 0.0044 32.0 19.8 111 3-120 156-310 (477)
480 KOG2247 WD40 repeat-containing 68.0 0.91 2E-05 49.9 -2.0 160 43-212 40-201 (615)
481 PRK14131 N-acetylneuraminic ac 67.7 1.1E+02 0.0023 32.9 13.7 11 17-27 190-200 (376)
482 PF14727 PHTB1_N: PTHB1 N-term 67.6 2E+02 0.0043 31.7 17.3 108 47-154 34-165 (418)
483 PF05935 Arylsulfotrans: Aryls 67.6 1E+02 0.0022 34.4 14.0 135 14-154 126-303 (477)
484 PF12768 Rax2: Cortical protei 67.5 1.4E+02 0.003 31.1 13.9 114 59-177 15-146 (281)
485 PF10395 Utp8: Utp8 family; I 66.5 1.9E+02 0.004 33.8 15.7 148 2-154 137-307 (670)
486 PRK05560 DNA gyrase subunit A; 66.5 2.9E+02 0.0063 33.2 19.7 202 4-212 496-724 (805)
487 PF07995 GSDH: Glucose / Sorbo 65.2 91 0.002 32.9 12.4 49 83-133 3-59 (331)
488 PF07995 GSDH: Glucose / Sorbo 65.2 86 0.0019 33.1 12.2 101 40-142 4-133 (331)
489 COG4590 ABC-type uncharacteriz 65.1 21 0.00046 39.3 7.5 143 37-185 220-375 (733)
490 TIGR03606 non_repeat_PQQ dehyd 62.7 2.6E+02 0.0056 31.2 20.0 103 39-142 31-165 (454)
491 PF11715 Nup160: Nucleoporin N 62.4 35 0.00076 38.4 9.2 68 5-72 157-252 (547)
492 TIGR03606 non_repeat_PQQ dehyd 61.4 2.7E+02 0.0059 31.1 15.9 58 77-134 25-90 (454)
493 PF12657 TFIIIC_delta: Transcr 60.7 49 0.0011 31.4 8.6 32 123-154 86-123 (173)
494 PF07676 PD40: WD40-like Beta 57.8 41 0.0009 23.3 5.7 28 38-65 9-38 (39)
495 smart00036 CNH Domain found in 57.4 2.4E+02 0.0053 29.3 20.8 62 3-68 10-73 (302)
496 KOG1900 Nuclear pore complex, 57.1 70 0.0015 39.6 10.6 138 57-210 96-273 (1311)
497 COG5276 Uncharacterized conser 55.3 2.8E+02 0.0061 29.4 22.0 143 6-155 96-244 (370)
498 KOG1520 Predicted alkaloid syn 54.6 1.3E+02 0.0029 32.5 11.2 134 48-185 74-236 (376)
499 PF11635 Med16: Mediator compl 53.8 3.7E+02 0.008 32.0 16.0 147 1-147 109-345 (753)
500 PF03088 Str_synth: Strictosid 53.5 52 0.0011 28.2 6.6 66 41-108 1-85 (89)
No 1
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-40 Score=341.72 Aligned_cols=456 Identities=25% Similarity=0.339 Sum_probs=368.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+||..+.|||+++..|.|.|..+.++.....|.......|+-+.|++..+++|.+++++|.|.+||+.+..+.......|
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H 207 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH 207 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc
Confidence 47899999999999999999999999988888876688899999999999999999999999999999999888999999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
..+...|+|+| +..+|++.+.|.+|.+||++..+....+....+...++|.++|.+|++|...|.|..||+|..+.|+.
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 99999999999 78899999999999999999998888899999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC--CCcEEcCCCCCCCccccccccccccCCCCCcccCCCCC
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV--GDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAE 237 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~--Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~ 237 (568)
++. .|...|++++|.+.. .+++... +-.|+. ++.| .. +.....+.+.
T Consensus 288 v~s--ah~~sVt~vafq~s~-tvltkss------ln~G~~~~~~~v--------------n~------~s~~~~aat~-- 336 (673)
T KOG4378|consen 288 VRS--AHDASVTRVAFQPSP-TVLTKSS------LNSGDNQQNGSV--------------NS------SSNATGAATE-- 336 (673)
T ss_pred Eee--ecccceeEEEeeecc-eeeeccc------cccCccCCCcee--------------cc------ccccccccCC--
Confidence 988 788899999999853 3333211 001110 1111 00 0011111111
Q ss_pred CccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcc-cccccCCCCCC
Q 008356 238 ASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAK-KDHLPIDKKPS 316 (568)
Q Consensus 238 ~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~-~~~~~~~~~~~ 316 (568)
...+....+++| +.++|+..+...|++-+..-+..++|-+|.|++++..+-. |-+..|.. +|++.+|-++|
T Consensus 337 --g~rNsgiVe~aP-~~~l~~s~p~~~lsa~~~~ts~~~~~~g~p~iI~~ds~~k-----~~Ds~G~n~~d~~~~d~g~S 408 (673)
T KOG4378|consen 337 --GPRNSGIVERAP-SDELRKSIPANLLSAQNQLTSLGYGVSGTPTIIRRDSFCK-----FLDSQGPNAVDRMSTDLGAS 408 (673)
T ss_pred --CCccccchhcCc-hhhhhhccCchhhhhhccccccccCccCCCceeehhhhhh-----hhhccCCccccceeeccCcc
Confidence 123566778999 7899999999999998888888899999999999876554 87777877 78999888885
Q ss_pred ccccCCCCcccccccCCCceeeeeeccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCcCCCccchhhhcccCCC
Q 008356 317 SMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTSKQDDARSFALLGSTPSPSSKSEDSSITPPEAWGGEKLSDKFALLRQPL 396 (568)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (568)
.|....+ ||+| | |.. .+| |.++.+++ | |+++ +|..+-...
T Consensus 409 -----------S~gD~fs---PIrD----------D---~~~--~n~----K~~d~~~~--k---Gd~f--~f~p~~ns~ 448 (673)
T KOG4378|consen 409 -----------SYGDSFS---PIRD----------D---WET--LNR----KPQDYETA--K---GDRF--SFCPPVNSG 448 (673)
T ss_pred -----------cccccCC---cccc----------c---hhh--cCC----CCCchhcc--c---cCcc--ccccccccC
Confidence 2223233 6663 2 111 122 67777777 3 5666 444444444
Q ss_pred CCCCcccccccCCcccccccccccccCccccccccccccccccccccccccccccccCCCCCCCCcCCCCCccccccccc
Q 008356 397 NMPSRYGMSTSSGLTSSSMYSGLQDVSLSQTSISSLTDSNLSRENMRTKDVTSYQETSSLGFPEHLSSSFPSLSLGTKGI 476 (568)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (568)
--|.|-.+ .+++.|++.|++.|.| ....+|...+.+..+.++..+ +++.++|+.+ +++.+++ .|.||++
T Consensus 449 fsp~~n~V-~Ss~ttS~~~~spl~d-f~~s~G~~~~~n~~lt~e~~~--~~s~~~e~~s----d~~~~s~---kl~t~gv 517 (673)
T KOG4378|consen 449 FSPVDNSV-NSSTTTSLQRNSPLKD-FSNSSGDGKLMNIALTDELCE--EQSANIEVAS----DTGGGSD---KLNTPGV 517 (673)
T ss_pred CCcccCcc-cccccchhhccCcccc-ccCCCCcchhhcccccchHHH--Hhhcceeeec----cCCCCcc---cccCCCC
Confidence 45677776 4558999999999999 788888888888888888776 9999999995 6666666 8999999
Q ss_pred cCCCCCCCCCCCCcccCcCCCCcchhcccccccCCccccCCCcccccchhhHHHHHhhhccccccccccCCCCCCccccC
Q 008356 477 LGSGNLDSSRPSSLTLTHREPRRTYAERISTTSGTSLSVGSPKTKKTGAETKEELLSNFLSRSDTSAVVEPGIPPAINVR 556 (568)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (568)
.+++|+++. |.+ +++|+ +++|++||.+++--.+-.++||+||++.| .|+++..++|+|.+|.+|++
T Consensus 518 ~a~gn~~~~-~lS-N~TRn--s~~~~~~i~~~s~~~~L~~~p~i~ksss~----------n~p~~~~a~~ag~~s~l~~~ 583 (673)
T KOG4378|consen 518 DAEGNRRLR-LLS-NATRN--STPHHANITPQSSNPLLKPQPLIAKSSSG----------NLPAQMDADWAGEFSELRDF 583 (673)
T ss_pred CCccccccc-ccc-ccccc--CCcccccCCCcccCccccCCcccccCCCC----------CCchhhhhhhhhhhHHHHHH
Confidence 999999998 666 99999 99999999999954444599999999999 38888999999999999999
Q ss_pred CCce
Q 008356 557 IPIH 560 (568)
Q Consensus 557 ~~~~ 560 (568)
+.|-
T Consensus 584 v~qs 587 (673)
T KOG4378|consen 584 VDQS 587 (673)
T ss_pred HHhh
Confidence 8763
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=240.69 Aligned_cols=282 Identities=15% Similarity=0.220 Sum_probs=219.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
.|+|+|.+|++|+.|.++++||+.+......+++ |...|.|++|+|||+ .|++|+.||.|++||..++++....+.+|
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGH 199 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCcccccccCc
Confidence 4899999999999999999999999999999997 888999999999998 79999999999999999988888999999
Q ss_pred CCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 81 SAPTAGISFSS-----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 81 ~~~VtslafsP-----dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
...|++++|.| .+++|++++.||.|+|||+..++++.++ +|..+|+|++|--+ .+|++|+.|++|++|+...+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccch
Confidence 99999999976 5689999999999999999999988887 89999999999865 48999999999999999886
Q ss_pred CCceEEEeecCCCCCeeEEEEccC-----------CCe---------------EEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRA-----------KPV---------------FIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspd-----------g~~---------------Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
...+.++ +|..+|+.++.+.+ +++ -+++ ......|++++.|.++.+|+.
T Consensus 279 -~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~--~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 279 -KLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL--KDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred -hHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh--ccCcceeEEecCCceEEEecc
Confidence 3445566 89999999988743 111 0111 113357999999999999985
Q ss_pred CCCCccccccccccccCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccc
Q 008356 209 LPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQ 288 (568)
Q Consensus 209 r~~~~~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~ 288 (568)
..... ++.|...+..-+ -.+.|+| |.-
T Consensus 354 ~~~kk-----------------------------------------------pi~rmtgHq~lV----n~V~fSP--d~r 380 (480)
T KOG0271|consen 354 FKSKK-----------------------------------------------PITRMTGHQALV----NHVSFSP--DGR 380 (480)
T ss_pred ccccc-----------------------------------------------chhhhhchhhhe----eeEEECC--Ccc
Confidence 43221 000000000000 1234677 433
Q ss_pred cCCC----CcccccccCcCcccccccCCCCCCc-cccCCCCcccccccCCCceeeeeeccC
Q 008356 289 PITP----SLDKLWDGHEGAKKDHLPIDKKPSS-MLFPSSSRRFPYAEDGSNEHSVFDWKS 344 (568)
Q Consensus 289 ~~~~----s~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (568)
-|+. ..+++|+..+|..+..|-+|..+.- ++| |++.|+-.+.+...---+||-++
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw-saDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW-SADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe-ccCccEEEEcCCCceEEEEEeee
Confidence 2222 2389999999999999998865543 348 88888877766666666666643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-27 Score=244.30 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=175.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
.|+.|+++|++|+.+|.++||+..+...++.+.+ |...+.++.|+|. ...-+++|+.||+|++|++.+.. .+..+.+
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~-~l~~l~g 259 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET-PLQDLEG 259 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccCCceeeeccCCCc-chhhhhc
Confidence 4789999999999999999999999999999998 7778899999998 35479999999999999998866 4778999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
|...|..++|+|+|++|++++.|.+-++||++++..+... +|...|.+++|++||.++++|+.|..-+|||+|++. .+
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EE
Confidence 9999999999999999999999999999999998766554 899999999999999999999999999999999985 34
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.++. +|...|.+|+|+|+|-.|+++ +.|++++|||+|....
T Consensus 339 m~L~--gH~k~I~~V~fsPNGy~lATg------------s~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 339 MFLA--GHIKEILSVAFSPNGYHLATG------------SSDNTCKVWDLRMRSE 379 (459)
T ss_pred EEec--ccccceeeEeECCCceEEeec------------CCCCcEEEeeeccccc
Confidence 4555 899999999999976555555 6699999999998665
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=7.3e-27 Score=255.61 Aligned_cols=195 Identities=18% Similarity=0.290 Sum_probs=176.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
.|+|+.++|++++.|++|++|.+.+..++..+++ |..+|.++.|+|.|- +|++++.|++.++|..+...+ .+.+.+|
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-H~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~P-lRifagh 534 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-HLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKP-LRIFAGH 534 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecC-CCcceeeEEecCCce-EEEecCCCceeeeeecccCCc-hhhhccc
Confidence 4899999999999999999999999999999996 888999999999985 999999999999999988774 7889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
...|.|+.|+|+.+|+++|+.|.+|++||+.+|..++.| +|.++|.+++|+|+|++|++|+.||.|.+||+.++. ++.
T Consensus 535 lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~ 613 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS-LVK 613 (707)
T ss_pred ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc-chh
Confidence 999999999999999999999999999999999999999 799999999999999999999999999999999974 344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.+. +|.+.|.++.|+.+|..||+ ++.|.+|++||+.....
T Consensus 614 ~l~--~Ht~ti~SlsFS~dg~vLas------------gg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 614 QLK--GHTGTIYSLSFSRDGNVLAS------------GGADNSVRLWDLTKVIE 653 (707)
T ss_pred hhh--cccCceeEEEEecCCCEEEe------------cCCCCeEEEEEchhhcc
Confidence 444 79999999999997655544 46699999999876443
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=238.28 Aligned_cols=200 Identities=21% Similarity=0.272 Sum_probs=177.2
Q ss_pred ccCC--CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCK--DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpd--G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
|+|. +..||+|+.||+|++|++.+...+..+.+ |...|..++|+|+|+ +|+|++.|.+-++||+.++.. +....+
T Consensus 225 fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g-H~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~E-lL~QEG 301 (459)
T KOG0272|consen 225 FHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG-HLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSE-LLLQEG 301 (459)
T ss_pred EccCCCccceeeeccCCceeeeccCCCcchhhhhc-chhhheeeeecCCCc-eeeecccccchhhcccccchh-hHhhcc
Confidence 7786 56899999999999999988889999997 667778899999998 899999999999999998875 556789
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
|...|.+++|++||.++++|+.|..-+|||+|+++++..+ +|-.+|..++|+|+|..||+|+.|++++|||++.... +
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-l 380 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-L 380 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-c
Confidence 9999999999999999999999999999999999998888 7999999999999999999999999999999998854 3
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~ 218 (568)
.. ..+|..-|+.|+|.|. .+.+|++++.|+++++|..+.+.+...+.
T Consensus 381 y~--ipAH~nlVS~Vk~~p~-----------~g~fL~TasyD~t~kiWs~~~~~~~ksLa 427 (459)
T KOG0272|consen 381 YT--IPAHSNLVSQVKYSPQ-----------EGYFLVTASYDNTVKIWSTRTWSPLKSLA 427 (459)
T ss_pred ee--cccccchhhheEeccc-----------CCeEEEEcccCcceeeecCCCcccchhhc
Confidence 33 3489999999999984 34456666889999999988887765543
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-24 Score=215.00 Aligned_cols=190 Identities=19% Similarity=0.319 Sum_probs=163.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H 80 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H 80 (568)
.++||++.++++.|+.+++||+++++..+.|.+ |...|.+++|+++++ .+++|+.|.+|++|++.+... ...... +
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck-~t~~~~~~ 147 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCK-YTIHEDSH 147 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEe-cCCceEEEEecCCCc-eeecCCCcceeeeeeecccEE-EEEecCCC
Confidence 478999999999999999999999999999998 666778899999998 699999999999999987763 333232 3
Q ss_pred CCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 81 SAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 81 ~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
.+.|.|+.|+|+ .-+|++++.|++|++||+++.+....+ +|.+.++.++++|||.++++|+.||.+.+||++..++
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence 789999999996 789999999999999999998887776 7999999999999999999999999999999998854
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
+...+|...|.+++|+|+.-+|+.+ .+..|+|||+.+.
T Consensus 227 ---lysl~a~~~v~sl~fspnrywL~~a-------------t~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 227 ---LYSLEAFDIVNSLCFSPNRYWLCAA-------------TATSIKIWDLESK 264 (315)
T ss_pred ---eEeccCCCeEeeEEecCCceeEeec-------------cCCceEEEeccch
Confidence 3344789999999999976555443 3566888887643
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-25 Score=227.76 Aligned_cols=181 Identities=15% Similarity=0.245 Sum_probs=157.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-----CCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-----NSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-----dg~~lLaTgs~DGtV~VWDl~t~~~~v~ 75 (568)
+|+|||+.||+|+.||.|++||.++|+++..-...|...|.+++|.| ..+ +|++++.||.|+|||+..+.+ +.
T Consensus 164 awsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~ 241 (480)
T KOG0271|consen 164 AWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VR 241 (480)
T ss_pred EECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EE
Confidence 58999999999999999999999998876543334888999999976 345 799999999999999988774 77
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEe-----------cCC---------
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFI-----------DDD--------- 134 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafs-----------Pdg--------- 134 (568)
++.+|+.+|+|+.|-. ..+|++++.|++|++|+...|.+.+.+ +|...|+.++++ |.+
T Consensus 242 ~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred EeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 8999999999999984 468999999999999999999988887 799999999877 223
Q ss_pred ----------------CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 135 ----------------WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 135 ----------------~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
..|++|+.|.++.+|+....++++..+. +|..-|+.+.|+||++|+++++
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT--GHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh--chhhheeeEEECCCccEEEEee
Confidence 3599999999999999988877777666 9999999999999999988664
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=234.21 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=172.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
.|+++|+.|++++.++.+++|++...+ ....+.+ |...|++++|+++++ ++++++.|++|+|||+......++.++
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec
Confidence 379999999999999999999997777 6666654 778899999999998 899999999999999955544688899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-
Q 008356 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ- 156 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~- 156 (568)
+|...|++++|+|+++++++|+.|++|++||+++++++..+ .|.+.|++++|++++++|++++.|+.|+|||+.+...
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 99999999999999999999999999999999999999888 6999999999999999999999999999999999853
Q ss_pred ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 157 PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 157 ~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
+...+. .+.. ++++++|+|++++++++ ..|+.+++||++.......
T Consensus 324 ~~~~~~--~~~~~~~~~~~~fsp~~~~ll~~------------~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 324 CLKLLS--GAENSAPVTSVQFSPNGKYLLSA------------SLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred eeeccc--CCCCCCceeEEEECCCCcEEEEe------------cCCCeEEEEEccCCcceee
Confidence 233333 3333 59999999977665554 5699999999987665443
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.92 E-value=2.3e-23 Score=206.88 Aligned_cols=198 Identities=19% Similarity=0.253 Sum_probs=171.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v 74 (568)
||+|.|+++|.|+-|+...||++.+. +..+++.+ |.+.+.|+.|..|+ .|+|++-|.++.+||+++++ ++
T Consensus 104 A~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~-~~ 179 (343)
T KOG0286|consen 104 AYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ-QT 179 (343)
T ss_pred EECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCCC--ceEecCCCceEEEEEcccce-EE
Confidence 68999999999999999999999754 23445665 88999999999865 49999999999999999987 58
Q ss_pred EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 75 ~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
..+.+|.+.|.++.+.| +++.+++|+.|+..++||+|.+.+++.| +|+..|++++|.|+|.-+++|+.|+++++||+|
T Consensus 180 ~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 180 QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 88999999999999999 9999999999999999999999999998 799999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (568)
Q Consensus 153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~ 215 (568)
... .+.++....-..+|++++|+..|++|.. +..|..+.+||.-+.....
T Consensus 260 aD~-~~a~ys~~~~~~gitSv~FS~SGRlLfa------------gy~d~~c~vWDtlk~e~vg 309 (343)
T KOG0286|consen 260 ADQ-ELAVYSHDSIICGITSVAFSKSGRLLFA------------GYDDFTCNVWDTLKGERVG 309 (343)
T ss_pred CCc-EEeeeccCcccCCceeEEEcccccEEEe------------eecCCceeEeeccccceEE
Confidence 873 4555554445678999999997665544 4569999999987655433
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-23 Score=202.72 Aligned_cols=190 Identities=18% Similarity=0.225 Sum_probs=163.3
Q ss_pred CCEEEEEECCCcEEEEECC-----CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 6 DEHLASISLSGDLILHNLA-----SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~-----tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
-+.|++++.|.++.+|++. .|..++.+++ |...|..+..+++++ ++++++.|+++++||+.+++ ..+.+.+|
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~-~t~~f~GH 104 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGE-STRRFVGH 104 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCc-eEEeccccceEEEEEecCCc-EEEEEEec
Confidence 4678899999999999975 3567888998 788899999999997 89999999999999999986 47889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~~ 156 (568)
...|.+++|++|.+.|++|+.|++|++||+..........+ .+.|.|++|+|+ ..+|+.++.|+.|++||+++.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~- 183 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ- 183 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-
Confidence 99999999999999999999999999999987665544433 688999999997 7899999999999999999873
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
....+ .+|.+.++.++++|||..++. ++.|+.+.+||++....
T Consensus 184 l~~~~--~gh~~~v~t~~vSpDGslcas------------Ggkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 184 LRTTF--IGHSGYVNTVTVSPDGSLCAS------------GGKDGEAMLWDLNEGKN 226 (315)
T ss_pred hhhcc--ccccccEEEEEECCCCCEEec------------CCCCceEEEEEccCCce
Confidence 33333 389999999999997766555 46799999999987554
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.90 E-value=6.8e-23 Score=207.77 Aligned_cols=205 Identities=18% Similarity=0.281 Sum_probs=178.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
+.|-++.+++|+.|++|+|||+++|++...+.+ |...|+.+++++... +++++++|+.|+.||+..++ .++...+|-
T Consensus 159 vdP~n~wf~tgs~DrtikIwDlatg~LkltltG-hi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nk-vIR~YhGHl 235 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-HIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNK-VIRHYHGHL 235 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcccCeEEEeecc-hhheeeeeeecccCc-eEEEecCCCeeEEEechhhh-hHHHhcccc
Confidence 567889999999999999999999999999997 778899999999988 89999999999999999887 477789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|+|++.+|.-+.|++|+.|.++++||+|+...+..+ +|..+|..+.+.|-...+++|+.|++|++||++.++.. .
T Consensus 236 S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-~- 313 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-I- 313 (460)
T ss_pred ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-E-
Confidence 99999999999999999999999999999999988888 69999999999998888999999999999999998532 2
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEecc----------------------------CCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETT----------------------------CKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~----------------------------ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
....|...|.+++.+|....+++++. .+.+.++++++..|.+.+||-+...
T Consensus 314 -tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 314 -TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred -eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence 23368899999999987655554321 2234477888888999999987643
No 12
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=7.2e-23 Score=203.99 Aligned_cols=198 Identities=17% Similarity=0.239 Sum_probs=173.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
.|+|+|.+||+|+.|..|.+|++. ..+....+++ |.+.|..+.|.+++. .+++++.|.+|+.||+++++. ++..+.
T Consensus 54 ~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~-~rk~k~ 130 (338)
T KOG0265|consen 54 KFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGS-HILSCGTDKTVRGWDAETGKR-IRKHKG 130 (338)
T ss_pred EECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCC-EEEEecCCceEEEEeccccee-eehhcc
Confidence 489999999999999999999964 4445566775 888999999999998 799999999999999999884 778899
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
|...|+.++-.. ...++.+++.|+++++||+|+...++++..+.+++++.|..++..+.+|+-|+.|++||++... ..
T Consensus 131 h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~ 209 (338)
T KOG0265|consen 131 HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GL 209 (338)
T ss_pred ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCc-ce
Confidence 999999998554 4457788999999999999999999999889999999999999999999999999999999874 34
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
.++. +|.+.|+.+..+++|.+ +++.++|.++++||+|||++..+
T Consensus 210 ~~ls--Gh~DtIt~lsls~~gs~------------llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 210 YTLS--GHADTITGLSLSRYGSF------------LLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred EEee--cccCceeeEEeccCCCc------------cccccccceEEEEEecccCCCCc
Confidence 5555 99999999999997655 45557899999999999998665
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.90 E-value=5e-24 Score=219.02 Aligned_cols=191 Identities=19% Similarity=0.275 Sum_probs=170.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+++|.++++|+.+|.|++|+. +.+.+..+++||.+.|++++|+|+.. .|+++++||+|+|||....++ ...+.+|.
T Consensus 146 ws~~g~wmiSgD~gG~iKyWqp-nmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke-e~vL~GHg 222 (464)
T KOG0284|consen 146 WSHNGTWMISGDKGGMIKYWQP-NMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE-ERVLRGHG 222 (464)
T ss_pred EccCCCEEEEcCCCceEEeccc-chhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch-hheeccCC
Confidence 7899999999999999999997 45667788888889999999999876 799999999999999976653 56679999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|.+++|+|...+|++++.|..|++||.+++.++..+ .|+..|..+.|++++++|++++.|..++|||+++.+ .+..
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk-El~~ 301 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK-ELFT 301 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH-HHHH
Confidence 99999999999999999999999999999999998877 799999999999999999999999999999999663 2344
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
++ +|...|+++.|+|- .+.++.+++.|+.|..|.+.
T Consensus 302 ~r--~Hkkdv~~~~WhP~-----------~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 302 YR--GHKKDVTSLTWHPL-----------NESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hh--cchhhheeeccccc-----------cccceeeccCCCceEEEecc
Confidence 44 89999999999995 45567777889999999886
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=199.39 Aligned_cols=186 Identities=17% Similarity=0.201 Sum_probs=164.6
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
|+.+|++++.|.+..+||+++++.+..|.+ |.+-|.++.+.|...+.|++|+-|+..+|||++.+.+ ++.+.+|...|
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDI 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDI 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeeccccccc
Confidence 477899999999999999999999999998 6666778999994444899999999999999998874 88999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
+++.|.|+|.-|++|++|++.++||+|..+.+..+.++ .+|++++|+..|++|++|..|..+.+||.-..+ .+..+
T Consensus 233 Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e-~vg~L 311 (343)
T KOG0286|consen 233 NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE-RVGVL 311 (343)
T ss_pred ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc-eEEEe
Confidence 99999999999999999999999999999998888654 579999999999999999999999999987764 33444
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
. +|...|.++..+|||-.++++++ |..++||.
T Consensus 312 ~--GHeNRvScl~~s~DG~av~TgSW------------Ds~lriW~ 343 (343)
T KOG0286|consen 312 A--GHENRVSCLGVSPDGMAVATGSW------------DSTLRIWA 343 (343)
T ss_pred e--ccCCeeEEEEECCCCcEEEecch------------hHheeecC
Confidence 4 99999999999998766666644 99999993
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=6.7e-23 Score=224.71 Aligned_cols=197 Identities=14% Similarity=0.224 Sum_probs=172.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-------------------------------eeEEeeCCCCCcEEEEEEccCCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA-------------------------------KAAELKDPNEQVLRVLDYSRNSR 50 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~-------------------------------~v~~l~~~h~~~Vs~Lafspdg~ 50 (568)
|+.|+.+||.|-.|..|++|.+...+ ....+. .|.++|..+.|+|+.+
T Consensus 386 fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~-GH~GPVyg~sFsPd~r 464 (707)
T KOG0263|consen 386 FSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY-GHSGPVYGCSFSPDRR 464 (707)
T ss_pred ecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee-cCCCceeeeeeccccc
Confidence 78889999999999999999986311 112344 4888999999999988
Q ss_pred eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEE
Q 008356 51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA 129 (568)
Q Consensus 51 ~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLa 129 (568)
+|+++++|++||+|.+++..+ +...++|..+|.++.|+|.|.++++++.|++-++|......+++++ +|...+.|+.
T Consensus 465 -fLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~ 542 (707)
T KOG0263|consen 465 -FLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS 542 (707)
T ss_pred -ceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence 899999999999999999886 4456799999999999999999999999999999999999999888 7999999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|+|+.+|+++|+.|.+|++||+.++. .++++. +|.++|.+++|+|+|++|+++ +.|+.|++||+.
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~--GH~~~V~al~~Sp~Gr~LaSg------------~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFT--GHKGPVTALAFSPCGRYLASG------------DEDGLIKIWDLA 607 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCc-EEEEec--CCCCceEEEEEcCCCceEeec------------ccCCcEEEEEcC
Confidence 99999999999999999999999984 567776 899999999999988887766 569999999998
Q ss_pred CCCcccc
Q 008356 210 PSVTTSS 216 (568)
Q Consensus 210 ~~~~~~s 216 (568)
.......
T Consensus 608 ~~~~v~~ 614 (707)
T KOG0263|consen 608 NGSLVKQ 614 (707)
T ss_pred CCcchhh
Confidence 7554433
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.90 E-value=2.1e-22 Score=210.10 Aligned_cols=199 Identities=16% Similarity=0.263 Sum_probs=169.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------- 72 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------- 72 (568)
+||.+|..||+|..||.++||+. +|.++..+.. |+++|..++|+..|. +|++++.|+++.+||..++..
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~-HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQ-HKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEec-Cchhhhhhhc-cCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeecc
Confidence 58999999999999999999995 7777777775 888999999999998 899999999999999744321
Q ss_pred --------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-
Q 008356 73 --------------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI- 119 (568)
Q Consensus 73 --------------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~- 119 (568)
++..+.+|.++|+++.|+|.+.+|++++.|++++||..........+
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~ 398 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ 398 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh
Confidence 13356779999999999999999999999999999999887777666
Q ss_pred ecCCCeEEEEEecC---------CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 120 TYEAPFSSLAFIDD---------DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 120 ~h~~~ItsLafsPd---------g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
.|...|..+.|+|. +..+++++.|++|++||+..+. ++..+. .|..+|++++|+|+|+|++++
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~i~~f~--kH~~pVysvafS~~g~ylAsG----- 470 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-PIHTLM--KHQEPVYSVAFSPNGRYLASG----- 470 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-eeEeec--cCCCceEEEEecCCCcEEEec-----
Confidence 69999999999995 4679999999999999999884 445554 799999999999988776666
Q ss_pred CeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 191 ETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
+.|+.|.+|+.+.......+
T Consensus 471 -------s~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 471 -------SLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred -------CCCCeeEeccccchheeEee
Confidence 56999999998876654443
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=194.54 Aligned_cols=195 Identities=11% Similarity=0.153 Sum_probs=166.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|..+|+.+++|++||+++|||++...+.+.++ +...|+++..+|+.. -|++|.++|.|++||+....+....+....
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 78899999999999999999999877777776 568999999999876 689999999999999988866556666777
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP------SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~------v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
..|.++...|||.+++.+...|.+++|++-+.+. +..+ .|.+.|..+.++|++++|++++.|.+|+||+.++.
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 8899999999999999999999999999976532 2233 58889999999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
-+....+. +|..++...+|+-+|.||+++ +.|..+++||+.....
T Consensus 248 ~kle~~l~--gh~rWvWdc~FS~dg~YlvTa------------ssd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 248 FKLELVLT--GHQRWVWDCAFSADGEYLVTA------------SSDHTARLWDLSAGKE 292 (311)
T ss_pred eeeEEEee--cCCceEEeeeeccCccEEEec------------CCCCceeecccccCce
Confidence 33334444 899999999999977766665 5599999999877554
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.89 E-value=2.2e-23 Score=214.29 Aligned_cols=194 Identities=16% Similarity=0.249 Sum_probs=165.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|.|+|+.|++|+..|.+.+|+...-.....++ .|+..|+++.|++++. .+++|+.+|.|++|+..-+. ++.+..|.
T Consensus 104 WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn--Vk~~~ahh 179 (464)
T KOG0284|consen 104 WTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN--VKIIQAHH 179 (464)
T ss_pred EcCCCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCC-EEEEcCCCceEEecccchhh--hHHhhHhh
Confidence 88999999999999999999974433333344 4899999999999998 89999999999999986654 45556655
Q ss_pred -CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 82 -APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 82 -~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
..|++++|+|++..+++|++||+|+|||....+....+ +|...|.+++|+|....|++|+.|..|++||.+++.+ +.
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-l~ 258 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-LA 258 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-hh
Confidence 89999999999999999999999999999988777666 7999999999999999999999999999999999853 33
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
.+. +|...|..+.|++++++|++ ++.|..++++|+|.....
T Consensus 259 tlh--~HKntVl~~~f~~n~N~Llt------------~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 259 TLH--GHKNTVLAVKFNPNGNWLLT------------GSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred hhh--hccceEEEEEEcCCCCeeEE------------ccCCceEEEEehhHhHHH
Confidence 333 89999999999997665544 467999999999955543
No 19
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.89 E-value=8.4e-24 Score=220.19 Aligned_cols=249 Identities=17% Similarity=0.187 Sum_probs=215.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+.+|++|+.|+..|+|..+|+.++++.+++. ..+.|+++.|.++.+ +++..+...++|||-.+.+ +++++.|.
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq--~~AVAQK~y~yvYD~~GtE--lHClk~~~ 210 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQ--FFAVAQKKYVYVYDNNGTE--LHCLKRHI 210 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchH--HHHhhhhceEEEecCCCcE--EeehhhcC
Confidence 67899999999999999999999999999987 567899999999876 4555678999999988876 78888886
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
. |..+.|.|...+|++++..|.+++.|+.+|+.+..+ ...+.+..++-+|.+.++.+|..+|+|.+|........+++
T Consensus 211 ~-v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 211 R-VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred c-hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 5 999999999999999999999999999999999888 56788999999999999999999999999999998767777
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccccccccc---CCCCCcccCCCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVS---GSRPNSRSGPSAE 237 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~---~~~sslt~sssG~ 237 (568)
++ |.++|.+|+++++|+|+++. +.|+.|+|||+|.+....++.+..+.. -++..+.+.+.|.
T Consensus 290 Lc---H~g~V~siAv~~~G~YMaTt------------G~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 290 LC---HRGPVSSIAVDRGGRYMATT------------GLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred Hh---cCCCcceEEECCCCcEEeec------------ccccceeEeeeccccccceeecCCCccccccccccceeeecCC
Confidence 75 99999999999987776665 569999999999999877766633322 2567778888888
Q ss_pred CccCccCC----CCCCCCcccccCCCCCceeeecCCCCCCcCCccccccccccc
Q 008356 238 ASSLTVGG----TGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDV 287 (568)
Q Consensus 238 ~ss~~~~s----~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv 287 (568)
-+.++... ...++||++|...+ ++..|+ |||+|||
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~-~V~~l~--------------FcP~EDv 393 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGG-PVEDLR--------------FCPYEDV 393 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCc-ccccce--------------eccHHHe
Confidence 77777653 35789999999886 999998 9999998
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=1.1e-20 Score=183.91 Aligned_cols=193 Identities=20% Similarity=0.312 Sum_probs=163.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|+|++++|++++.||.|++|++.+++....+.. |...+..+.|.++++ +|++++.||.|++||+...+ ....+..|
T Consensus 16 ~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~-~~~~~~~~ 92 (289)
T cd00200 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGE-CVRTLTGH 92 (289)
T ss_pred EEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCC-EEEEEcCCCeEEEEEcCccc-ceEEEecc
Confidence 4789999999999999999999998887777775 666777899999986 79999999999999998765 35667789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
...|.++.|+++++++++++.|+.|++||+++++....+ .|...|.+++|+|++.++++++.|+.|++||++... +..
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~ 171 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVA 171 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cce
Confidence 889999999999888888888999999999988877777 478899999999999999988889999999998663 344
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.+. .|...|.+++|+++++.++++ +.|+.|++||++..
T Consensus 172 ~~~--~~~~~i~~~~~~~~~~~l~~~------------~~~~~i~i~d~~~~ 209 (289)
T cd00200 172 TLT--GHTGEVNSVAFSPDGEKLLSS------------SSDGTIKLWDLSTG 209 (289)
T ss_pred eEe--cCccccceEEECCCcCEEEEe------------cCCCcEEEEECCCC
Confidence 444 677899999999976554443 44899999998763
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=214.07 Aligned_cols=202 Identities=21% Similarity=0.328 Sum_probs=166.4
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl-~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+|+|+++++++++.|++|+|||+ ..+..++.+++ |...|++++|+|++ +++++|+.|++|+|||+++++ ....+.+
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g-H~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~-~~~~l~~ 286 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG-HSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE-CVRKLKG 286 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEecC-CCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe-EEEeeec
Confidence 58999999999999999999999 55688899996 77788999999999 499999999999999999976 4788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe-ecCC--CeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI-TYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~-~h~~--~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
|...|++++|++++++|++++.|+.|++||+.++. ++..+ .+.. .+++++|+|++.+|+++..|+.|++||++..
T Consensus 287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999999999999999999999999999998 44444 3333 5899999999999999999999999999987
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
.. ...+. +|...+.++ |++. ...++.++++++.|+.|++||+........+
T Consensus 367 ~~-~~~~~--~~~~~~~~~-~~~~--------~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 367 KS-VGTYT--GHSNLVRCI-FSPT--------LSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred cc-eeeec--ccCCcceeE-eccc--------ccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 43 34444 555543222 2221 1335667788888999999999875544433
No 22
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=1.5e-20 Score=206.84 Aligned_cols=199 Identities=15% Similarity=0.268 Sum_probs=157.6
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356 1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (568)
Q Consensus 1 afSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~ 72 (568)
+|+| ++++|++|+.||+|+|||+.++. .+..+.+ |...|.+++|+|++.++|++++.|++|+|||+..+.
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~- 159 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK- 159 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-
Confidence 4888 78999999999999999997652 3556665 778899999999876689999999999999998876
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCC-eEEEEEecCCCEEEEEE----cCCeE
Q 008356 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGT----SNGRV 146 (568)
Q Consensus 73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~-ItsLafsPdg~~LasGs----~DG~V 146 (568)
....+..|...|++++|+|++.+|++++.|++|++||+++++.+..+ .|.+. +..+.|.+++..+++++ .|+.|
T Consensus 160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 36678889999999999999999999999999999999999887766 45543 45778998877777654 47899
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
++||++....++.... ..+...+....|++++.+++ +++..|+.|++||++....
T Consensus 240 klWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L~-----------lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 240 MLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLLY-----------IGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEEE-----------EEEeCCCeEEEEEeeCCce
Confidence 9999998765555443 12334555667777654433 2333599999999987553
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.89 E-value=9.3e-22 Score=191.87 Aligned_cols=174 Identities=14% Similarity=0.245 Sum_probs=148.9
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeE
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTA 85 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~~~Vt 85 (568)
-+|++++.|-+|++|...+|.+...++ |.+..|+.+.+.|+++ .|++++. ..|++||+++..+ ++..+.+|...|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~-~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKK-DLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcc-hhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 478999999999999999999999998 4678899999999987 5666554 6799999987765 6889999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 008356 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (568)
Q Consensus 86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~ 165 (568)
.+.|..+|+++++|++||+++|||+|...+.+.+.+..+|+++..+|+...|++|..+|.|++||++........+. .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liP--e 165 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIP--E 165 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCC--C
Confidence 99999999999999999999999999988888899999999999999999999999999999999997633222222 3
Q ss_pred CCCCeeEEEEccCCCeEEEe
Q 008356 166 SSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 166 h~~~VtsLafspdg~~Las~ 185 (568)
....|.++...|+|.+++..
T Consensus 166 ~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred CCcceeeEEEcCCCcEEEEe
Confidence 34567777777777666543
No 24
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=9.1e-22 Score=217.29 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=158.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC--------------------------------C-----------------------
Q 008356 2 YNCKDEHLASISLSGDLILHNLAS--------------------------------G----------------------- 26 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~t--------------------------------g----------------------- 26 (568)
|++||+|||+||.||.|+||.+.. .
T Consensus 275 FS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~ 354 (712)
T KOG0283|consen 275 FSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKA 354 (712)
T ss_pred eCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCcc
Confidence 899999999999999999998754 0
Q ss_pred -----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEe
Q 008356 27 -----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVG 100 (568)
Q Consensus 27 -----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs 100 (568)
++++++++ |.+.|-+|.|+.++ +|++++.|.+|+||++....+ ..+..|...|+||+|+| |.++|++|+
T Consensus 355 f~f~ekP~~ef~G-Ht~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 355 FVFSEKPFCEFKG-HTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred ccccccchhhhhc-cchhheecccccCC--eeEeccccccEEeecCCCcce--eeEEecCCeeEEEEecccCCCcEeecc
Confidence 01223444 66667889999875 799999999999999987774 45677999999999999 999999999
Q ss_pred CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC------CCCeeEEE
Q 008356 101 LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS------SEAVSSLC 174 (568)
Q Consensus 101 ~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h------~~~VtsLa 174 (568)
.|++|+||++...+.+.......-|++++|.|||++.++|+.+|.+++|+.+..+ .........| ...|+.+.
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk-~~~~~~I~~~~~Kk~~~~rITG~Q 508 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK-LVSDFHIRLHNKKKKQGKRITGLQ 508 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe-EEEeeeEeeccCccccCceeeeeE
Confidence 9999999999998888777778999999999999999999999999999998753 2222211111 22799999
Q ss_pred EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
|.|.. .. .++..+.|..|+|+|.+.-.....+
T Consensus 509 ~~p~~----------~~-~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 509 FFPGD----------PD-EVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred ecCCC----------CC-eEEEecCCCceEEEeccchhhhhhh
Confidence 99831 22 3444455999999999655444433
No 25
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2e-22 Score=211.23 Aligned_cols=205 Identities=19% Similarity=0.248 Sum_probs=177.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|-.||++|++|+..|.|+|||+.+...++.+++ |..+++.+.|+|++..+|++|++|+.+++||+.+... ...+.+|+
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~ht 153 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHT 153 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCc
Confidence 667999999999999999999766556677776 7788999999999998999999999999999998874 66889999
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
+.|.|.+|+| ++..+++|+.||+|++||++.. ..+..+.|+.+|..+.+-|.|..+++++. ..|+|||+-++.+.+.
T Consensus 154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT 232 (487)
T ss_pred ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh
Confidence 9999999999 7778999999999999999987 77888899999999999999999998875 5799999997655433
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV 223 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~ 223 (568)
... .|...|+|+++..+ +..|++++.|+.|++||+..+....++..+.+.
T Consensus 233 ~~~--~H~KtVTcL~l~s~------------~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv 282 (487)
T KOG0310|consen 233 SMF--NHNKTVTCLRLASD------------STRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV 282 (487)
T ss_pred hhh--cccceEEEEEeecC------------CceEeecccccceEEEEccceEEEEeeecccce
Confidence 332 59999999999874 467888899999999999988887777766554
No 26
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.5e-22 Score=195.31 Aligned_cols=195 Identities=21% Similarity=0.274 Sum_probs=166.7
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 1 MYNCKD-EHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSpdG-~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
+|+++. +.+++++.||.++|||+.. ..++..++. |+..|.++.|++..+..+++++.|++|++|+..-... +.++.
T Consensus 67 ~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE-H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S-v~Tf~ 144 (311)
T KOG0277|consen 67 AWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE-HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS-VQTFN 144 (311)
T ss_pred eecCCCcceEEEEecCceEEEeccCCCCcchhHHHh-hhhheEEeccccccceeEEeeccCCceEeecCCCCcc-eEeec
Confidence 466654 5788889999999999643 346777876 6777888999998887899999999999999976653 78899
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 008356 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~ 155 (568)
+|...|+..+|+| ..+.+++++.|+.+++||++. ++.+.+..|...|.|+.|+. +.++|++|+.|+.|++||+++.+
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 9999999999999 889999999999999999987 45555447888999999998 67889999999999999999998
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
.|+.++. +|.-.|+.++|+|. ...+|++++.|-++++||...
T Consensus 225 ~pl~eL~--gh~~AVRkvk~Sph-----------~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 225 TPLFELN--GHGLAVRKVKFSPH-----------HASLLASASYDMTVRIWDPER 266 (311)
T ss_pred ccceeec--CCceEEEEEecCcc-----------hhhHhhhccccceEEeccccc
Confidence 8888876 89999999999996 345677788899999999753
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.8e-22 Score=211.12 Aligned_cols=196 Identities=16% Similarity=0.262 Sum_probs=175.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
-.+.+++|++|..|+||+..+++.+..|.+ |.+.|++++.+|... +++++++|-+|++||.+..-...+.+.+|...|
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeA-H~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV 143 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEA-HSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV 143 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeec-cccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence 356889999999999999999999999997 888999999999998 899999999999999988776788999999999
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 85 tslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
++++|+| |.+.+++++.|++|++|.+....+..++ +|...|+|+.|-+- ..+|++|+.|..|+|||.++. .+++.
T Consensus 144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~CV~T 222 (794)
T KOG0276|consen 144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-SCVQT 222 (794)
T ss_pred EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH-HHHHH
Confidence 9999999 8899999999999999999998888777 79999999999884 469999999999999999987 46677
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
+. +|...|..++|+|.- .++++++.||+|++|+-..+.....+
T Consensus 223 Le--GHt~Nvs~v~fhp~l------------piiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 223 LE--GHTNNVSFVFFHPEL------------PIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred hh--cccccceEEEecCCC------------cEEEEecCCccEEEecCcceehhhhh
Confidence 77 899999999999954 45666688999999998877654443
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=2.9e-21 Score=210.39 Aligned_cols=198 Identities=15% Similarity=0.256 Sum_probs=170.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|+|||++||+|+.||+|+|||...+-+..+|.. |...|+.+.|...++ .+++.+-||+|+.||+.....-.......
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~ 434 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPE 434 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCC
Confidence 4899999999999999999999999999999997 778899999999997 89999999999999997665422222334
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 81 SAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
.....|++..|.|.+++.|+.|. .|++|++++|+.+..+ +|+++|.+++|+|++..|++++.|.+|++||+-.....+
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 45678899999999999999888 6999999999999888 899999999999999999999999999999998765555
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~ 215 (568)
..+. +...+..++|.|+|+-++.. ..||.|.+||+.......
T Consensus 515 Etl~---i~sdvl~vsfrPdG~elaVa------------TldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 515 ETLE---IRSDVLAVSFRPDGKELAVA------------TLDGQITFFDIKEAVQVG 556 (893)
T ss_pred eeEe---eccceeEEEEcCCCCeEEEE------------EecceEEEEEhhhceeec
Confidence 6664 66789999999988776655 459999999987655443
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=2.7e-21 Score=210.58 Aligned_cols=193 Identities=18% Similarity=0.316 Sum_probs=169.3
Q ss_pred CccCCCCEEEEEECC-CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~D-G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+||..|+.||.|+.. |.+.||++.....+...++ |...+.+++++|||+ ++++|++||.|+|||...+-+ ..++..
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC-~vTFte 390 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFC-FVTFTE 390 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCc-EEEeccCCCcEEEEeccCceE-EEEecc
Confidence 478889999998765 8999999988888877776 777889999999998 999999999999999998876 667899
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC--CeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCC
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA--PFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQ 156 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~--~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~ 156 (568)
|+..|+.+.|+..++.+++.+.||+|+.||+...+..+++.... ...|++..|.|.++++|+.|.. |+||+++++ +
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-q 469 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-Q 469 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC-e
Confidence 99999999999999999999999999999999999988885444 4678899999999999998875 999999998 5
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.+.++. +|.++|.+++|+|.+..|+++ +-|.+|++||+-..
T Consensus 470 llDiLs--GHEgPVs~l~f~~~~~~LaS~------------SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 470 LLDILS--GHEGPVSGLSFSPDGSLLASG------------SWDKTVRIWDIFSS 510 (893)
T ss_pred eeehhc--CCCCcceeeEEccccCeEEec------------cccceEEEEEeecc
Confidence 666776 999999999999976655555 55999999998543
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3e-21 Score=187.04 Aligned_cols=202 Identities=17% Similarity=0.273 Sum_probs=171.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
||-||+|.++++.|.+|++|+...+.+++++.+ |...|.+++.+.++. .|++|+.|..|.+||+.+++ ..+.+.+|.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dns-kf~s~GgDk~v~vwDV~TGk-v~Rr~rgH~ 101 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNS-KFASCGGDKAVQVWDVNTGK-VDRRFRGHL 101 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeecccccccc-ccccCCCCceEEEEEcccCe-eeeeccccc
Confidence 788999999999999999999999999999998 777788889888887 69999999999999999998 488899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~--~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
+.|+.+.|+.+...+++|+.|.+|++||.|.. ++++++ .....|.++... +..+++|+.||+++.||+|.+..
T Consensus 102 aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l-- 177 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL-- 177 (307)
T ss_pred ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee--
Confidence 99999999999999999999999999999874 567777 466788888887 56899999999999999998742
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEec--------------------------------cCCCCeEEEEecCCCcEEcC
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDET--------------------------------TCKAETALLGGAVGDSILMP 206 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s--------------------------------~ssd~~~Lls~s~Dg~V~VW 206 (568)
... .-..+|++++|+++++..+.+. -.....++++++.||.|.+|
T Consensus 178 -~sD--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 178 -SSD--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred -ehh--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEE
Confidence 122 2346899999999998865332 12244578999999999999
Q ss_pred CCCCCCc
Q 008356 207 DPLPSVT 213 (568)
Q Consensus 207 Dlr~~~~ 213 (568)
|+-....
T Consensus 255 dLvd~~~ 261 (307)
T KOG0316|consen 255 DLVDETQ 261 (307)
T ss_pred Eecccee
Confidence 9876443
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.87 E-value=2.1e-20 Score=181.84 Aligned_cols=188 Identities=21% Similarity=0.388 Sum_probs=160.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+++++++++++.+|.|++||+.+++....+.. |...+.+++|++++. ++++++.|+.|++||+...+. ...+..|.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~ 177 (289)
T cd00200 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-HTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKC-VATLTGHT 177 (289)
T ss_pred EcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-CCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEcccccc-ceeEecCc
Confidence 677888888888899999999998888888875 677899999999976 788888899999999987663 55677888
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|.++.|+|+++.+++++.|+.|++||++.++.+..+ .+...+.+++|++++.++++++.||.|++||++... +...
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~ 256 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-CVQT 256 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-eEEE
Confidence 89999999999999999999999999999998888887 788899999999998898888889999999998753 3444
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
+. .|...|.+++|+++++++ ++++.|+.|++||
T Consensus 257 ~~--~~~~~i~~~~~~~~~~~l------------~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LS--GHTNSVTSLAWSPDGKRL------------ASGSADGTIRIWD 289 (289)
T ss_pred cc--ccCCcEEEEEECCCCCEE------------EEecCCCeEEecC
Confidence 44 688899999999975554 4446699999996
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=195.53 Aligned_cols=190 Identities=14% Similarity=0.263 Sum_probs=168.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|-|.|++|++++.|.+|+.|++.++-++.++.+ |.+.|+.++.+.||. ++++++.|.+|++|-+.++++ ...++.|.
T Consensus 201 f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~-k~~lR~hE 277 (406)
T KOG0295|consen 201 FLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-HSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQC-KAELREHE 277 (406)
T ss_pred EEecCCeeeecccccceeEEecccceeEEeccC-chHhEEEEEecCCee-EEEecCCCceEEEEEeccchh-hhhhhccc
Confidence 567899999999999999999999999999997 777999999999998 999999999999999998865 45688999
Q ss_pred CCeEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 82 APTAGISFSSD---------------DKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 82 ~~VtslafsPd---------------g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
.+|.|++|.|. +.++.+++.|++|++||+.++.++.++ +|...|+.++|+|.|+||+++..|++
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc
Confidence 99999999753 258999999999999999999998887 79999999999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|++||+++.. +.+.+. .|..-|++++|+.+-. ++++|+.|..+++|.-|
T Consensus 358 lrvwdl~~~~-cmk~~~--ah~hfvt~lDfh~~~p------------~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 358 LRVWDLKNLQ-CMKTLE--AHEHFVTSLDFHKTAP------------YVVTGSVDQTVKVWECR 406 (406)
T ss_pred EEEEEeccce-eeeccC--CCcceeEEEecCCCCc------------eEEeccccceeeeeecC
Confidence 9999999884 445555 7888999999998644 56666789999999754
No 33
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.87 E-value=6.9e-21 Score=198.81 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=160.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee-----------------------------------------EEeeCCCCCcE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKA-----------------------------------------AELKDPNEQVL 40 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v-----------------------------------------~~l~~~h~~~V 40 (568)
|+.+|+||++++.||++.+||..++... ..+.+ |.+.|
T Consensus 284 Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V 362 (524)
T KOG0273|consen 284 WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEV 362 (524)
T ss_pred EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeec-ccCce
Confidence 7888999999999999999998665422 23344 77789
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCC---------CEEEEEeCCCeEEEEECC
Q 008356 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDD---------KIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg---------~~LaSgs~DGtV~IWDlr 111 (568)
.+|+|+|.+. +|+++++|++++||....... ...+.+|...|+.+.|+|.+ ..|++++.|++|++||+.
T Consensus 363 ~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~-~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 363 NALKWNPTGS-LLASCSDDGTLKIWSMGQSNS-VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEEECCCCc-eEEEecCCCeeEeeecCCCcc-hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 9999999998 999999999999999865543 77899999999999998854 479999999999999999
Q ss_pred CCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 112 SRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 112 t~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
.+.++..+ .|..+|.+++|+|+|+++|+|+.||.|++|+++.. +.++.+...+.|..++|+.+|.+|..+
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~~~~Ifel~Wn~~G~kl~~~----- 511 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQGTGGIFELCWNAAGDKLGAC----- 511 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch----heeEeecCCCeEEEEEEcCCCCEEEEE-----
Confidence 99999998 89999999999999999999999999999999988 334444567789999999976655444
Q ss_pred CeEEEEecCCCcEEcCCCC
Q 008356 191 ETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr 209 (568)
..|+.+++-|+|
T Consensus 512 -------~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 -------ASDGSVCVLDLR 523 (524)
T ss_pred -------ecCCCceEEEec
Confidence 348889988876
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.1e-20 Score=184.29 Aligned_cols=194 Identities=14% Similarity=0.199 Sum_probs=163.3
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeE
Q 008356 1 MYNCK-DEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVS 75 (568)
Q Consensus 1 afSpd-G~~LasGs~DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~ 75 (568)
+|||- |..||+++.|..|+||+... -.+...+...|+..|+.++|+|.|+ +|++|+.|.++.||.-...+ ..+.
T Consensus 21 awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~ 99 (312)
T KOG0645|consen 21 AWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVA 99 (312)
T ss_pred EeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEe
Confidence 57887 88999999999999999874 3455667777899999999999998 99999999999999875443 3377
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR---PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~---~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
.+.+|...|.|++|+++|++|++|+.|+.|-||.+..+. +..++ .|...|..+.|+|...+|++++.|++|++|+-
T Consensus 100 ~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 100 TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence 899999999999999999999999999999999998654 34444 69999999999999999999999999999987
Q ss_pred CCCC--CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 152 RGKP--QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 152 rt~~--~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.... .+...+. +|...|.+++|++.|.. |++++.|++|+||..+
T Consensus 180 ~~dddW~c~~tl~--g~~~TVW~~~F~~~G~r------------l~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 180 EDDDDWECVQTLD--GHENTVWSLAFDNIGSR------------LVSCSDDGTVSIWRLY 225 (312)
T ss_pred cCCCCeeEEEEec--CccceEEEEEecCCCce------------EEEecCCcceEeeeec
Confidence 6322 2334444 88899999999996544 4555779999999865
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.87 E-value=1.9e-20 Score=217.83 Aligned_cols=192 Identities=18% Similarity=0.287 Sum_probs=159.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----c----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG----A----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg----~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~ 72 (568)
+|+|+|++||+|+.|+.|+|||+... . .+..+. +...+.+++|++....+|++++.||+|++||+.+..
T Consensus 490 ~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~- 566 (793)
T PLN00181 490 GFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ- 566 (793)
T ss_pred EECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-
Confidence 48999999999999999999997531 1 122233 345688899998755589999999999999998776
Q ss_pred eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEE
Q 008356 73 KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 73 ~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWD 150 (568)
.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+.+...+.++.|.+ ++.+|++|+.||.|++||
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD 646 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYD 646 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 4677889999999999997 88999999999999999999998888887777899999964 799999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
++....+...+. +|...|.++.|. ++. .+++++.|+.|++||++.
T Consensus 647 ~~~~~~~~~~~~--~h~~~V~~v~f~-~~~------------~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 647 LRNPKLPLCTMI--GHSKTVSYVRFV-DSS------------TLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCCCccceEec--CCCCCEEEEEEe-CCC------------EEEEEECCCEEEEEeCCC
Confidence 997654444554 799999999996 332 456667799999999875
No 36
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=5.3e-20 Score=204.54 Aligned_cols=196 Identities=12% Similarity=0.186 Sum_probs=150.1
Q ss_pred CccCC-CCEEEEEECCCcEEEEECCCCc--------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356 1 MYNCK-DEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (568)
Q Consensus 1 afSpd-G~~LasGs~DG~V~VWDl~tg~--------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~ 71 (568)
+|+|+ +++|++|+.||.|+|||+.++. .+..+.+ |...|.+++|+|++..+|++++.|++|+|||+.+..
T Consensus 81 afsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~ 159 (568)
T PTZ00420 81 QFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159 (568)
T ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc
Confidence 48886 7899999999999999997542 2334554 778899999999998778899999999999998876
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEE-----EEEecCCCEEEEEEcCC-
Q 008356 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS-----LAFIDDDWILTAGTSNG- 144 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~Its-----LafsPdg~~LasGs~DG- 144 (568)
. ...+. |...|.+++|++++.+|++++.|+.|++||+++++.+..+ .|.+.+.+ ..|++++.+|++++.|+
T Consensus 160 ~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 160 R-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred E-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 3 33333 6678999999999999999999999999999999888776 56665433 23457888999888764
Q ss_pred ---eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 145 ---RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 145 ---~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.|+|||++....++..+....+.+.+.. .|.++ .+.++++|..|+.|++|++...
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p-~~D~~-----------tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLIP-HYDES-----------TGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceEE-eeeCC-----------CCCEEEEEECCCeEEEEEccCC
Confidence 7999999976566665543233333322 23332 4566777788999999998653
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3e-21 Score=196.35 Aligned_cols=199 Identities=15% Similarity=0.180 Sum_probs=173.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+|+..|++|++++.|=.+++||.++ .++++.+.+ |+..|.+++|-|.|. ++++++.|.+|++|+++++.+ +..+.+
T Consensus 157 ~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-h~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~c-v~t~~~ 233 (406)
T KOG0295|consen 157 SFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-HEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYC-VKTFPG 233 (406)
T ss_pred EEecCccEEEecCCccchhheeHHHHHHHHHHhcC-cccceeeEEEEecCC-eeeecccccceeEEeccccee-EEeccC
Confidence 3677899999999998899999876 455666665 778899999999997 799999999999999999986 788999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC---------------CCEEEEEEcC
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD---------------DWILTAGTSN 143 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd---------------g~~LasGs~D 143 (568)
|...|..++.+.||.++++++.|.+|++|-+.++++...+ .|+.+|.|++|.|. +.++.+++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 9999999999999999999999999999999999888777 69999999999873 3699999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
++|++||+.++.+ +..+. +|..+|..++|+|.|+||+++ ..|+++++||++...+....
T Consensus 314 ktIk~wdv~tg~c-L~tL~--ghdnwVr~~af~p~Gkyi~Sc------------aDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 314 KTIKIWDVSTGMC-LFTLV--GHDNWVRGVAFSPGGKYILSC------------ADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred ceEEEEeccCCeE-EEEEe--cccceeeeeEEcCCCeEEEEE------------ecCCcEEEEEeccceeeecc
Confidence 9999999999853 33333 899999999999977776665 56999999999987765544
No 38
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=7.9e-20 Score=203.13 Aligned_cols=185 Identities=15% Similarity=0.177 Sum_probs=146.3
Q ss_pred EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCe
Q 008356 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPT 84 (568)
Q Consensus 12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------~v~~l~~H~~~V 84 (568)
|+.++.|++|+......+..+.+ |...|.+++|+|+..++|++|+.||+|+|||+..... .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 45678899999877777777876 7788999999998545899999999999999975321 234678899999
Q ss_pred EEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 85 AGISFSSDDKI-IASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 85 tslafsPdg~~-LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
.+++|+|++.. |++++.|++|++||+++++.+..+.+...|.+++|+++|.+|++++.|+.|+|||+++.. .+..+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~- 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-IASSFH- 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-EEEEEe-
Confidence 99999998765 578999999999999999887777777889999999999999999999999999999874 344444
Q ss_pred cCCCCCeeEEE-----EccCCCeEEEeccCCCCeEEEEecCC----CcEEcCCCCCCC
Q 008356 164 CSSSEAVSSLC-----WQRAKPVFIDETTCKAETALLGGAVG----DSILMPDPLPSV 212 (568)
Q Consensus 164 ~~h~~~VtsLa-----fspdg~~Las~s~ssd~~~Lls~s~D----g~V~VWDlr~~~ 212 (568)
+|.+.+.... |++++.+| ++++.| +.|+|||++...
T Consensus 207 -gH~g~~~s~~v~~~~fs~d~~~I------------lTtG~d~~~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 207 -IHDGGKNTKNIWIDGLGGDDNYI------------LSTGFSKNNMREMKLWDLKNTT 251 (568)
T ss_pred -cccCCceeEEEEeeeEcCCCCEE------------EEEEcCCCCccEEEEEECCCCC
Confidence 6777654433 33444444 333333 589999998643
No 39
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=1.4e-19 Score=199.23 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=149.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCcee-------------EEeeCCCCCcEEEEEEcc-CCCeEEEEEeCCCeEEEEECC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKA-------------AELKDPNEQVLRVLDYSR-NSRHLLVTAGDDGTLHLWDTT 68 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v-------------~~l~~~h~~~Vs~Lafsp-dg~~lLaTgs~DGtV~VWDl~ 68 (568)
++++..+++++.+.....|+...+..+ ..+.+ |.+.|.+++|+| ++. +|++|+.|++|++||+.
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIP 106 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecC
Confidence 345555566655555556654332211 13444 778899999999 555 89999999999999996
Q ss_pred CCC------ceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEE
Q 008356 69 GRS------PKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAG 140 (568)
Q Consensus 69 t~~------~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasG 140 (568)
... ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+ .|...|.+++|+|++.+|+++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 542 2356788999999999999964 79999999999999999999887777 588899999999999999999
Q ss_pred EcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 141 TSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 141 s~DG~V~VWDlrt~~~~v~~l~~~~h~~~-VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+.|+.|+|||+++.. .+..+. +|.+. +..+.|.+++..+++.+. +.+.|+.|++||++...
T Consensus 187 s~Dg~IrIwD~rsg~-~v~tl~--~H~~~~~~~~~w~~~~~~ivt~G~--------s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 187 SKDKKLNIIDPRDGT-IVSSVE--AHASAKSQRCLWAKRKDLIITLGC--------SKSQQRQIMLWDTRKMA 248 (493)
T ss_pred cCCCEEEEEECCCCc-EEEEEe--cCCCCcceEEEEcCCCCeEEEEec--------CCCCCCeEEEEeCCCCC
Confidence 999999999999874 344444 56554 456778887655554421 12348999999998754
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.85 E-value=7.9e-21 Score=198.99 Aligned_cols=190 Identities=17% Similarity=0.294 Sum_probs=161.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|+.+|..+++++.|+.|++||+++|+++..+. ....+.|+.|.|++.++|++|+.|+.|+.||++.++ .++....|
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~h 341 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRH 341 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhh
Confidence 589999999999999999999999999998887 567889999999998899999999999999999998 47778889
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--------------------------------e--------
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--------------------------------T-------- 120 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--------------------------------~-------- 120 (568)
-+.|..+.|-++++++++.++|+.|+||+.+.+-++..+ .
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n 421 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN 421 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC
Confidence 999999999999999999999999999998654332211 0
Q ss_pred ---------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCC
Q 008356 121 ---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAE 191 (568)
Q Consensus 121 ---------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~ 191 (568)
..+.-..+.|+|||.+|++|..||.|.+||.++.+ .+..+. .|.+.+..+.|+|. ..
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k-l~~~lk--ah~~~ci~v~wHP~-----------e~ 487 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK-LVSKLK--AHDQPCIGVDWHPV-----------EP 487 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh-hhhccc--cCCcceEEEEecCC-----------Cc
Confidence 01234468899999999999999999999999873 445555 78899999999996 33
Q ss_pred eEEEEecCCCcEEcCC
Q 008356 192 TALLGGAVGDSILMPD 207 (568)
Q Consensus 192 ~~Lls~s~Dg~V~VWD 207 (568)
..+++++-||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 4566667799999997
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.85 E-value=1.8e-19 Score=190.35 Aligned_cols=182 Identities=20% Similarity=0.338 Sum_probs=148.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC--CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD--PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------ 73 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~--~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~------ 73 (568)
|+|||+++++++.||+|.|||-.+|+.+.++.. .|++.|.++.|+||+. .|++++.|.+++|||+.+.+..
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecC
Confidence 899999999999999999999999999999872 4788999999999998 6999999999999998654311
Q ss_pred ------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 008356 74 ------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (568)
Q Consensus 74 ------------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~ 117 (568)
...+.+|...|+++..++++++|++|+.||.|.-||+.++..-+
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR 356 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc
Confidence 12467899999999999999999999999999999985432110
Q ss_pred E-------------------------------e------------------------------------------e----
Q 008356 118 C-------------------------------I------------------------------------------T---- 120 (568)
Q Consensus 118 ~-------------------------------~------------------------------------------~---- 120 (568)
. + .
T Consensus 357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK 436 (603)
T ss_pred cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence 0 0 0
Q ss_pred -----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 121 -----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 121 -----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
......+++++|++..+++|++|+.|+||.+..... ........|.++|++++|+|++.||+++
T Consensus 437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEe
Confidence 001133678899999999999999999999988542 2222334799999999999999988855
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.4e-20 Score=205.68 Aligned_cols=198 Identities=16% Similarity=0.199 Sum_probs=171.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|||.+.++++||+|-+|+||+..+.+++..+.+ |-+.|+.+.|++.-. .|+++++|.+|+||+.++..+ +..+.+|
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G-HlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~-iavltGH 134 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG-HLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC-IAVLTGH 134 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhhcc-ccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce-EEEEecC
Confidence 4899999999999999999999999999999997 778899999999988 799999999999999999885 8889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------------------ee-eEe-ecCCCeEEEEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------------------PS-SCI-TYEAPFSSLAF 130 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~----------------------------~v-~~~-~h~~~ItsLaf 130 (568)
...|+|..|+|....|++++.|.+|++||+..-+ .+ .++ +|+..|+-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 9999999999999999999999999999984210 01 112 58889999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+|.-.++++|+.|+.|++|.+...+ ...+-...+|.+.|.++-|+|. ..++++.+.|+.|+|||+..
T Consensus 215 hpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~------------q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPH------------QDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCc------------cceeEecCCCccEEEEeccc
Confidence 9999999999999999999998653 3444444599999999999994 45677778899999999976
Q ss_pred CCcc
Q 008356 211 SVTT 214 (568)
Q Consensus 211 ~~~~ 214 (568)
....
T Consensus 282 Rt~v 285 (1202)
T KOG0292|consen 282 RTSV 285 (1202)
T ss_pred ccce
Confidence 5543
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.7e-20 Score=205.27 Aligned_cols=194 Identities=16% Similarity=0.208 Sum_probs=170.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|||..-.|+++-..|.|++||.+-+.++..|.. |+++|+.++|+|... +|++|++|-.|+||+.....+ +..+.+|
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFde-HdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rrc-lftL~GH 92 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE-HDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRRC-LFTLLGH 92 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc-cCCccceeeecCCCC-eEEecCCccEEEEEeccccee-hhhhccc
Confidence 6999999999999999999999998999999987 889999999999998 999999999999999998875 6678999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC----
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP---- 155 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~---- 155 (568)
.+.|..+.|++.--+|++++.|.+|+||+..+++++.++ +|...|.|..|+|....+++++-|-+|+|||+..-.
T Consensus 93 lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 999999999999999999999999999999999999888 799999999999999999999999999999996311
Q ss_pred Cc----------------------eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 156 QP----------------------LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 156 ~~----------------------v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.+ +-..-..+|...|+-++|+|.- .++++++.|+.|++|...
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl------------pliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL------------PLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc------------ceEEecCCcceeeEEEec
Confidence 00 1111123899999999999954 455666779999999753
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.85 E-value=2.8e-19 Score=208.08 Aligned_cols=190 Identities=19% Similarity=0.342 Sum_probs=154.7
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
|++ ++.+|++++.||.|+|||+.+++.+..+.+ |...|.+++|++....+|++|+.||.|++||+..... +..+..+
T Consensus 540 ~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~ 617 (793)
T PLN00181 540 WNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK 617 (793)
T ss_pred eccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC
Confidence 554 468999999999999999999998888886 7788999999974334899999999999999987763 4445444
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC--
Q 008356 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP-- 155 (568)
Q Consensus 81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~-- 155 (568)
..|.++.|++ ++.+|++|+.|+.|++||+++.+ ++..+ .|...|.+++|. ++.+|++++.|+.|+|||++...
T Consensus 618 -~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 618 -ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 5799999965 79999999999999999998865 34333 788999999997 67899999999999999998531
Q ss_pred ---CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 156 ---QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 156 ---~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.++..+. +|...+..++|++++++|+++ +.|+.|++|+..
T Consensus 696 ~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasg------------s~D~~v~iw~~~ 738 (793)
T PLN00181 696 INETPLHSFM--GHTNVKNFVGLSVSDGYIATG------------SETNEVFVYHKA 738 (793)
T ss_pred cCCcceEEEc--CCCCCeeEEEEcCCCCEEEEE------------eCCCEEEEEECC
Confidence 3344444 788999999999976655544 568889999864
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=2.4e-21 Score=195.81 Aligned_cols=182 Identities=19% Similarity=0.304 Sum_probs=158.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCC
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS 81 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~ 81 (568)
.+.+.|++|+.|.+|+|||+++++++..+.. |.+.|-.+.|+.. ++++++.|.++.+||+.... ...+.+.+|.
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr 320 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHR 320 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence 3567899999999999999999999988875 6667777888842 89999999999999997654 2255688999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|+.+.|+ .++|++++.|++|++|++.+++.++++ +|...|.|+.+. ++++++|+.|.+|++||+..+ .++.+
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G-~cLRv 395 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-ACLRV 395 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEecccc-HHHHH
Confidence 999999997 679999999999999999999999988 799999998886 889999999999999999988 45667
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+. +|..-|.++.|+. ..+++|+.||+|++||+..
T Consensus 396 Le--GHEeLvRciRFd~--------------krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 396 LE--GHEELVRCIRFDN--------------KRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred Hh--chHHhhhheeecC--------------ceeeeccccceEEEEeccc
Confidence 76 8999999999964 4688889999999999864
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.85 E-value=5.2e-20 Score=186.95 Aligned_cols=170 Identities=17% Similarity=0.227 Sum_probs=149.3
Q ss_pred eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (568)
Q Consensus 29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW 108 (568)
.+.+++ |.+.|+|+++.|-++ .|++|+.|++++|||+.+++ +...+.+|...|..+++++..-|+++++.|+.|++|
T Consensus 144 ~rVi~g-HlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 144 YRVISG-HLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhhh-ccceEEEEeeCCCce-eEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 344554 888999999999876 89999999999999999998 466789999999999999999999999999999999
Q ss_pred ECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 109 DPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 109 Dlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
|++..+.++.+ +|-..|.|++.+|.-..|++|+.|..++|||+|+.. .+.++. +|..+|..+.+.|-
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~--GH~~~V~~V~~~~~--------- 288 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLS--GHTNPVASVMCQPT--------- 288 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEec--CCCCcceeEEeecC---------
Confidence 99999988776 799999999999999999999999999999999984 455555 89999999999874
Q ss_pred CCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 188 CKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 188 ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
+..+++++.|++|++||++...+...
T Consensus 289 ---dpqvit~S~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 289 ---DPQVITGSHDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred ---CCceEEecCCceEEEeeeccCceeEe
Confidence 34567778899999999998665433
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.84 E-value=5.9e-20 Score=187.85 Aligned_cols=192 Identities=17% Similarity=0.270 Sum_probs=166.0
Q ss_pred CEEEEEECCCcEEEEECCCCcee----EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------------
Q 008356 7 EHLASISLSGDLILHNLASGAKA----AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR------------ 70 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v----~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~------------ 70 (568)
..|++++.|.++++|..+.++.+ ...+ +|+..|.++...+++. .+++|+.|.+|+||+....
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~-GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCR-GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhc-ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence 46999999999999998876632 2223 4888899999999997 8999999999999993110
Q ss_pred ------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEE
Q 008356 71 ------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILT 138 (568)
Q Consensus 71 ------------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~La 138 (568)
..++..+.+|.++|.++.|++ ...+++++.|.+|+.||+.++..+..+.....+.|+.++|..++|+
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence 022567889999999999997 7889999999999999999999999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+|+.|..+++||+|++.-.+......+|.+.|.++.|+|. +..+|++++.|+++++||+|...
T Consensus 317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~-----------~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT-----------NEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC-----------CceEEEEEecCCeEEEEEeccCC
Confidence 9999999999999987665555666699999999999996 56678889999999999999755
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=1.3e-20 Score=197.44 Aligned_cols=210 Identities=17% Similarity=0.190 Sum_probs=167.3
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSp-dG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
|.| .+.+|++++.|+.|+||++.. +++++.+.+ |...|++++|+.+|. .|++++.|+.|++||++++.+..+ ..
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~--f~ 297 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSR--FH 297 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCC-eeeeeecceeeeeeccccceEEEE--Ee
Confidence 445 678999999999999999976 889999997 788899999999998 799999999999999999984332 23
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 80 HSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 80 H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
-...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+ .|-+.|..+.|-++|+.+++.+.|+.|+||+.+..- +
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ 376 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-P 376 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-c
Confidence 34568999999966 89999999999999999999998888 588999999999999999999999999999998652 2
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEec-----------------------------------cCCCCeEEEEecCCCc
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDET-----------------------------------TCKAETALLGGAVGDS 202 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s-----------------------------------~ssd~~~Lls~s~Dg~ 202 (568)
++.+. ..+.-...++..+|+++++++.+ -+.++.+|++|..||.
T Consensus 377 ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 22211 12333445566666666554211 2446677888888999
Q ss_pred EEcCCCCCCCccccc
Q 008356 203 ILMPDPLPSVTTSSV 217 (568)
Q Consensus 203 V~VWDlr~~~~~~s~ 217 (568)
+.+||-++-.....+
T Consensus 456 v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKL 470 (503)
T ss_pred EEEeechhhhhhhcc
Confidence 999998875544433
No 49
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=7.5e-20 Score=190.65 Aligned_cols=197 Identities=20% Similarity=0.300 Sum_probs=159.5
Q ss_pred CccCCC-CEEEEEECCCcEEEEECCCCce-------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CC
Q 008356 1 MYNCKD-EHLASISLSGDLILHNLASGAK-------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RS 71 (568)
Q Consensus 1 afSpdG-~~LasGs~DG~V~VWDl~tg~~-------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~ 71 (568)
+||+.. .+|++++.|+.|.+||+..... ...+.+ |...|.+++|++....+|+++++|+.+.|||++. ..
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 366654 4789999999999999964322 234454 8899999999999888999999999999999985 33
Q ss_pred ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 008356 72 PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVV 147 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~ 147 (568)
...+...+|.++|+|++|+| ++..||+|+.|++|++||+|+-+ ++..+ .|+..|.++.|+|+ ..+||+.+.|+.+.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 34677889999999999999 88899999999999999999854 44445 79999999999996 57888999999999
Q ss_pred EEECCCCCC-----------ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 148 FYDIRGKPQ-----------PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 148 VWDlrt~~~-----------~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|||+..-.. +.-.+.--||...|..+.|+|+.+++ +++.+.|+.+.||++.
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~-----------I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWT-----------IASVAEDNILQIWQMA 404 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeE-----------EEEecCCceEEEeecc
Confidence 999974211 12223334899999999999986654 5556779999999864
No 50
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=5.8e-20 Score=191.47 Aligned_cols=196 Identities=22% Similarity=0.381 Sum_probs=160.5
Q ss_pred CCC-CEEEEEECCCcEEEEECCCCc----------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-
Q 008356 4 CKD-EHLASISLSGDLILHNLASGA----------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS- 71 (568)
Q Consensus 4 pdG-~~LasGs~DG~V~VWDl~tg~----------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~- 71 (568)
|+. ..||+++..+.|+|||..+.. .-..+.+|++ .-..+.|++.....|++++.|++|++||+....
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~ 212 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESK 212 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccccceeEeeccCCCcEEEEecccccc
Confidence 444 567778889999999976422 1125677555 346699999988889999999999999995432
Q ss_pred -----ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CceeeEe-ecCCCeEEEEEec-CCCEEEEEE
Q 008356 72 -----PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS--RRPSSCI-TYEAPFSSLAFID-DDWILTAGT 141 (568)
Q Consensus 72 -----~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt--~~~v~~~-~h~~~ItsLafsP-dg~~LasGs 141 (568)
.....+.+|...|..++|++ +..+|++++.|+.+.|||+|+ .++.... .|.+.|.|++|+| ++.+||+|+
T Consensus 213 ~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 213 EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 23567889999999999999 888999999999999999995 4444443 6999999999999 577899999
Q ss_pred cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.|++|.|||+|+..+++..+. +|...|.+|.|+|. .+.+|++++.|+.+.|||+.....
T Consensus 293 ~D~tV~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh-----------~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 293 ADKTVALWDLRNLNKPLHTFE--GHEDEVFQVEWSPH-----------NETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred CCCcEEEeechhcccCceecc--CCCcceEEEEeCCC-----------CCceeEecccCCcEEEEecccccc
Confidence 999999999999887776666 89999999999996 567788888899999999866443
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-19 Score=177.10 Aligned_cols=186 Identities=17% Similarity=0.269 Sum_probs=160.1
Q ss_pred CCCcEEEEECCCCceeEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-
Q 008356 14 LSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS- 91 (568)
Q Consensus 14 ~DG~V~VWDl~tg~~v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP- 91 (568)
..|.+.|.++..++.+.++..- ..+.+.+++|+++.++.+++++.||.++|||+.....+++.++.|..+|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 3689999999766655554421 36778999999999989999999999999998777767899999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 008356 92 DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (568)
Q Consensus 92 dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~ 169 (568)
+.+.+++++.|++|++||...++.+.++ +|...|...+|+| ..+++++++.|+.+++||++...+... +. .|...
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~E 192 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSE 192 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccce
Confidence 7788899999999999999988888888 7999999999999 578999999999999999998755444 33 68889
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
|.++.|+.- +..++++++.|+.|+.||+|+...
T Consensus 193 il~cdw~ky-----------~~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 193 ILCCDWSKY-----------NHNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred eEeeccccc-----------CCcEEEecCCCceEEEEehhhccc
Confidence 999999874 566788888999999999998764
No 52
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.83 E-value=8.7e-20 Score=198.82 Aligned_cols=199 Identities=19% Similarity=0.231 Sum_probs=166.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC----ceeE
Q 008356 4 CKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS----PKVS 75 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~----~~v~ 75 (568)
.+|.+|++|++|.++++|.++++. ++....+ |...|.+++++..+..+|++++.|+++++|++...+ +...
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 356799999999999999885433 2344444 778899999999888899999999999999996522 1122
Q ss_pred ----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 76 ----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 76 ----~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
....|...|+|++++|+.++|+||+.|++.++|+++..+...++ +|...+.|+.|++..+.+++++.|++|+||.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 34579999999999999999999999999999999988888887 7999999999999999999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (568)
Q Consensus 151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~ 218 (568)
+.+.. +.+.+. +|...|..+.|-.+++. |++++.||-|++|++....+..++-
T Consensus 534 is~fS-ClkT~e--GH~~aVlra~F~~~~~q------------liS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 534 ISTFS-CLKTFE--GHTSAVLRASFIRNGKQ------------LISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred eccce-eeeeec--CccceeEeeeeeeCCcE------------EEeccCCCcEEEEeccchhhhhhhh
Confidence 99984 456666 89999999999886554 4555669999999999877765553
No 53
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.5e-20 Score=203.82 Aligned_cols=197 Identities=18% Similarity=0.292 Sum_probs=159.7
Q ss_pred CCCEEEEEECCCcEEEEECCC---CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 5 KDEHLASISLSGDLILHNLAS---GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~t---g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
+.++||+++..|.|.+||+.. .+.+..|.. |...+++++|++...++|++|++||.|++||++.... ...+....
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nS 176 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNS 176 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccc
Confidence 357899999999999999976 344455664 7888999999999999999999999999999988774 55667788
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 008356 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP 157 (568)
Q Consensus 82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~ 157 (568)
..|.+|.|+| .+++++++.+.|.|++||+|... +...+ .|.++|.|+.|+|++.+||+|+.|+.|+|||+... ..+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 8899999999 88999999999999999999754 33333 79999999999999999999999999999999854 333
Q ss_pred eEEEeecCCCCCeeEEEEccCCCe-EEEeccCCCCeEEEEecCCCcEEcCCCC-CCCcccc
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPV-FIDETTCKAETALLGGAVGDSILMPDPL-PSVTTSS 216 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~-Las~s~ssd~~~Lls~s~Dg~V~VWDlr-~~~~~~s 216 (568)
..++. -..+|.+|.|-|..++ |++++ -..|-.|+|||+| |+-+-..
T Consensus 257 ~~tIn---Tiapv~rVkWRP~~~~hLAtcs----------mv~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 257 KHTIN---TIAPVGRVKWRPARSYHLATCS----------MVVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred eeEEe---ecceeeeeeeccCccchhhhhh----------ccccceEEEEeecccccccee
Confidence 44443 4578999999997654 23331 1238899999996 5554333
No 54
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-19 Score=194.45 Aligned_cols=176 Identities=20% Similarity=0.333 Sum_probs=147.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
.|+++|.+|++|..+|.|.|||..+.+.+..+.++|...|.+++|+. +.+.+|+.|+.|..+|++..+.....+.+|
T Consensus 224 ~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H 300 (484)
T KOG0305|consen 224 KWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGH 300 (484)
T ss_pred EECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcc
Confidence 37899999999999999999999999999999988899999999993 379999999999999998877655568899
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec-CCCEEEEEE--cCCeEEEEECCCCCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID-DDWILTAGT--SNGRVVFYDIRGKPQ 156 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP-dg~~LasGs--~DG~V~VWDlrt~~~ 156 (568)
...|..+.|++|++++++|+.|+.|.|||....+++..+ .|...|.+++|+| ...+||+|+ .|+.|++||..++..
T Consensus 301 ~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~ 380 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR 380 (484)
T ss_pred cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence 999999999999999999999999999999776666555 8999999999999 467888854 699999999997632
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFI 183 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~La 183 (568)
+....-...|.+|.|++..+-|+
T Consensus 381 ----i~~vdtgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 381 ----IDSVDTGSQVCSLIWSKKYKELL 403 (484)
T ss_pred ----ecccccCCceeeEEEcCCCCEEE
Confidence 22223445566666666554443
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.6e-19 Score=191.96 Aligned_cols=200 Identities=15% Similarity=0.184 Sum_probs=178.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|||..-.++++-.+|.|.|||.++...++.+.. .+.+|++.+|-...+ .+++|++|..|+||+..+.+ +++.+..|.
T Consensus 21 ~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e-kV~~FeAH~ 97 (794)
T KOG0276|consen 21 FHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE-KVKTFEAHS 97 (794)
T ss_pred cCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccc-eEEEecCCceEEEEecccce-eeEEeeccc
Confidence 788889999999999999999999999999886 677889999998766 89999999999999999987 589999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
+.|.|++.+|..-++++++.|-+|++||-+.+ .+.+++ +|...|.+++|+| |.+.+++++-|++|+||.+... .+.
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 99999999999999999999999999999875 556666 7999999999999 6789999999999999999876 455
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
..+. +|...|+|++|-+. .+..+|++++.|..|+|||...-.+..++
T Consensus 177 fTl~--gHekGVN~Vdyy~~----------gdkpylIsgaDD~tiKvWDyQtk~CV~TL 223 (794)
T KOG0276|consen 177 FTLE--GHEKGVNCVDYYTG----------GDKPYLISGADDLTIKVWDYQTKSCVQTL 223 (794)
T ss_pred eeee--ccccCcceEEeccC----------CCcceEEecCCCceEEEeecchHHHHHHh
Confidence 6666 89999999999883 47888999999999999999876665544
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.7e-18 Score=172.64 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=174.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEec
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~l~ 78 (568)
.|+.+|++|++++.|..|+|||..+++.++.+.. ++..+..++|..... .++.++. |.+|+..++.+++ .++.+.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dNk-ylRYF~ 97 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDNK-YLRYFP 97 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecCc-eEEEcC
Confidence 3889999999999999999999999999999886 555677889987776 4555554 8899999998887 488999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCc
Q 008356 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQP 157 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~ 157 (568)
+|...|+.++.+|-+..+++++.|++|++||+|..++...+... .-..++|+|+|-++|++.....|+|||+|.. +.|
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 99999999999998899999999999999999988877666433 3345899999999999999889999999975 456
Q ss_pred eEEEeec-CCCCCeeEEEEccCCCeEEEec---------------------------------cCCCCeEEEEecCCCcE
Q 008356 158 LTVLRAC-SSSEAVSSLCWQRAKPVFIDET---------------------------------TCKAETALLGGAVGDSI 203 (568)
Q Consensus 158 v~~l~~~-~h~~~VtsLafspdg~~Las~s---------------------------------~ssd~~~Lls~s~Dg~V 203 (568)
...+... +.....+.|.|+|+|++|+... -..++..+++++.||.|
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 5655532 4456789999999999976322 13577789999999999
Q ss_pred EcCCCCCCCccccc
Q 008356 204 LMPDPLPSVTTSSV 217 (568)
Q Consensus 204 ~VWDlr~~~~~~s~ 217 (568)
.+|+++.......+
T Consensus 257 ~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 257 HVWNLETGKKVAVL 270 (311)
T ss_pred EEEEcCCCcEeeEe
Confidence 99999776654443
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=9.1e-20 Score=187.89 Aligned_cols=194 Identities=20% Similarity=0.310 Sum_probs=154.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~- 79 (568)
+|+||+++|++++.|..+.+||+.+|.....+...+...+.+++|.|||. .|++|+.|+.+..||++++. ...+++
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv 352 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV 352 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence 59999999999999999999999999998888766677888999999998 69999999999999998876 333333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEE------------------------------
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLA------------------------------ 129 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLa------------------------------ 129 (568)
....|.+++..+||+++++.+.|..|++|+.++......+....+|+++.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 34679999999999999999999988888876543332222222333222
Q ss_pred --------------Eec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 008356 130 --------------FID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL 194 (568)
Q Consensus 130 --------------fsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~L 194 (568)
|-- +..++++|++|+.|+||+...+ +++.++. +|...|++++|+|. +...+
T Consensus 433 Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-kll~~Ls--GHs~~vNcVswNP~-----------~p~m~ 498 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-KLLAVLS--GHSKTVNCVSWNPA-----------DPEMF 498 (519)
T ss_pred hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-ceeEeec--CCcceeeEEecCCC-----------CHHHh
Confidence 222 3467889999999999998887 5677777 99999999999996 44456
Q ss_pred EEecCCCcEEcCCCCCC
Q 008356 195 LGGAVGDSILMPDPLPS 211 (568)
Q Consensus 195 ls~s~Dg~V~VWDlr~~ 211 (568)
++++.||+|++|-+.++
T Consensus 499 ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPSDN 515 (519)
T ss_pred hccCCCCeEEEecCCcc
Confidence 77788999999987655
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.82 E-value=2.2e-20 Score=187.51 Aligned_cols=175 Identities=19% Similarity=0.278 Sum_probs=155.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeC-------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKD-------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV 74 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v 74 (568)
|+|||++|++|+.||.|.|||..+|+..+.++- -++..|.|+.|+.|.+ .+++|+.||.|++|.+.++.+..
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHH
Confidence 899999999999999999999999986554432 1467899999999998 89999999999999999999877
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
+.-+.|...|+|+.|+.|+..|++++.|.++++.-+..|+++..+ +|...|+...|.++|..+++++.||+|+||+..+
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 777799999999999999999999999999999999999999888 7999999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccC
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafspd 178 (568)
.+ ++..++..+...+|.++-.-|.
T Consensus 380 te-C~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 380 TE-CLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred hh-hhhhccCCCCcccceeEEEcCC
Confidence 74 4455555566678888888774
No 59
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=170.70 Aligned_cols=196 Identities=16% Similarity=0.277 Sum_probs=157.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSW 76 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~ 76 (568)
+|+|.|++|++|+.|.++.||.-..+ +++..+.+ |+..|.+++|+++|. +|+++++|+.|-||.++... .....
T Consensus 68 Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 68 AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred eecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 68999999999999999999986644 46777887 778899999999998 99999999999999997443 23667
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
+..|...|..+.|+|...+|++++.|.+|++|+-.. -.++..+ .|...+.+++|++.|..|++++.|++|+||-..
T Consensus 146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 899999999999999999999999999999998763 2456666 578899999999999999999999999999843
Q ss_pred CCC-----C-------------------ceEEEe----------------ecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356 153 GKP-----Q-------------------PLTVLR----------------ACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (568)
Q Consensus 153 t~~-----~-------------------~v~~l~----------------~~~h~~~VtsLafspdg~~Las~s~ssd~~ 192 (568)
..- . .+.+++ ...|...|++++|.|. ...
T Consensus 226 ~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~-----------~~~ 294 (312)
T KOG0645|consen 226 TDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK-----------VSN 294 (312)
T ss_pred cCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC-----------CCC
Confidence 210 0 011111 0136667777887773 345
Q ss_pred EEEEecCCCcEEcCCCC
Q 008356 193 ALLGGAVGDSILMPDPL 209 (568)
Q Consensus 193 ~Lls~s~Dg~V~VWDlr 209 (568)
+|++++.||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 67777889999999753
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=192.47 Aligned_cols=268 Identities=20% Similarity=0.233 Sum_probs=203.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEE-eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAE-LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~-l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
+++++++..+++|++||..++..+.. +.+ |.+.|.++++..-+ .++++|+.|.++++||..++++ .+.+.+|...|
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C-~~~l~gh~stv 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGEC-THSLQGHTSSV 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcE-EEEecCCCceE
Confidence 56788999999999999999998887 776 78889999998744 4899999999999999988885 77889999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
.++... ..++++|+.|.+|++||+.++..+.++. |.++|+++.++ +.++++|+.|+.|+|||+++. ++++.+.
T Consensus 295 ~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~-~cl~sl~- 368 (537)
T KOG0274|consen 295 RCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG-KCLKSLS- 368 (537)
T ss_pred EEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-eeeeeec-
Confidence 998876 5678889999999999999999999996 99999999998 789999999999999999976 5667777
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC-CccccccccccccCCCCCcccCCCCCCccCc
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS-VTTSSVSLSTAVSGSRPNSRSGPSAEASSLT 242 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~-~~~~s~~~s~~~~~~~sslt~sssG~~ss~~ 242 (568)
+|...|+++.+... .++++++.|+.|++||++.. .+...+......
T Consensus 369 -gH~~~V~sl~~~~~-------------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~------------------- 415 (537)
T KOG0274|consen 369 -GHTGRVYSLIVDSE-------------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL------------------- 415 (537)
T ss_pred -CCcceEEEEEecCc-------------ceEEeeeeccceEeecCCchhhhhhhhcCCccc-------------------
Confidence 89999999987651 57888899999999999887 444443221110
Q ss_pred cCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCC-CCCCccccC
Q 008356 243 VGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPID-KKPSSMLFP 321 (568)
Q Consensus 243 ~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~-~~~~~~~~~ 321 (568)
+..+. .+.++.. +--.| ..+++||+.++.++..+... .-....+
T Consensus 416 -------------------v~~l~-~~~~~Lv-------s~~aD------~~Ik~WD~~~~~~~~~~~~~~~~~v~~l-- 460 (537)
T KOG0274|consen 416 -------------------VSSLL-LRDNFLV-------SSSAD------GTIKLWDAEEGECLRTLEGRHVGGVSAL-- 460 (537)
T ss_pred -------------------ccccc-cccceeE-------ecccc------ccEEEeecccCceeeeeccCCcccEEEe--
Confidence 01111 1111111 11112 35899999999999998873 3322222
Q ss_pred CCCcccccccCCCceeeeeeccCCCCccc
Q 008356 322 SSSRRFPYAEDGSNEHSVFDWKSSSTSKQ 350 (568)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (568)
....-.-+......--.|||..++...++
T Consensus 461 ~~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 461 ALGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ecCcceEEEEecCCeeEEEecccCchhhh
Confidence 11122333334444557889988887773
No 61
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=2.1e-19 Score=189.26 Aligned_cols=200 Identities=15% Similarity=0.193 Sum_probs=153.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--- 73 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--- 73 (568)
++.|.|.+|++|+.|-+|++||+... +..++++......|+.+.|++.+. .|++.+.....+|+|-++.+..
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred eecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeEEccCCceeeeee
Confidence 35789999999999999999998632 234455544567899999999998 5666667788999998765421
Q ss_pred --------eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEee------cCCCeEEEEEecCCCEE
Q 008356 74 --------VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCIT------YEAPFSSLAFIDDDWIL 137 (568)
Q Consensus 74 --------v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~~------h~~~ItsLafsPdg~~L 137 (568)
...-++|...++|.+|+| +...+++++.||++++||+...+ ...++. ..-.++.++|+++|++|
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence 223467999999999999 66789999999999999998643 344443 23358899999999999
Q ss_pred EEEEcCCeEEEEECCCCCC-ceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 138 TAGTSNGRVVFYDIRGKPQ-PLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 138 asGs~DG~V~VWDlrt~~~-~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
|+|+.||.|.+|+.+.... +...++ -.|.. .|+||.|+++|++|++- +.|+.+++||+|.+...
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p~~~vk-~AH~~g~~Itsi~FS~dg~~LlSR------------g~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRPVMKVK-DAHLPGQDITSISFSYDGNYLLSR------------GFDDTLKVWDLRQFKKP 399 (641)
T ss_pred hhcccCCceeeeecCCcccccceEee-eccCCCCceeEEEeccccchhhhc------------cCCCceeeeeccccccc
Confidence 9999999999999865422 222222 25655 89999999987766554 56999999999988753
No 62
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.81 E-value=1.6e-18 Score=170.89 Aligned_cols=204 Identities=18% Similarity=0.217 Sum_probs=173.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
||.+|.+|.++++|.++.||-..+|+.+.++.+ |.+.|.|++.+.+.+ .+++|+.|.++++||+.+++++ ..-...
T Consensus 18 yN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~-~liTGSAD~t~kLWDv~tGk~l--a~~k~~ 93 (327)
T KOG0643|consen 18 YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSK-HLITGSADQTAKLWDVETGKQL--ATWKTN 93 (327)
T ss_pred ecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcc-eeeeccccceeEEEEcCCCcEE--EEeecC
Confidence 789999999999999999999989999999998 888899999999887 7999999999999999999843 233456
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCeEEEEECCC-------CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356 82 APTAGISFSSDDKIIASVGL-----DKKLYTYDPGS-------RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~-----DGtV~IWDlrt-------~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V 148 (568)
.+|..+.|+.++++++.+.+ .+.|.++|++. .+++..+ .++..++.+.|.|-+++|++|.+||.|.+
T Consensus 94 ~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~ 173 (327)
T KOG0643|consen 94 SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISI 173 (327)
T ss_pred CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEE
Confidence 78999999999999887754 45799999983 4445444 67889999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV 223 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~ 223 (568)
||++++.+.+.... .|...|+.++++++ ..++++++.|.+-++||++.+....++....|.
T Consensus 174 ~da~~g~~~v~s~~--~h~~~Ind~q~s~d------------~T~FiT~s~Dttakl~D~~tl~v~Kty~te~Pv 234 (327)
T KOG0643|consen 174 YDARTGKELVDSDE--EHSSKINDLQFSRD------------RTYFITGSKDTTAKLVDVRTLEVLKTYTTERPV 234 (327)
T ss_pred EEcccCceeeechh--hhccccccccccCC------------cceEEecccCccceeeeccceeeEEEeeecccc
Confidence 99999866555544 68889999999995 456677788999999999998887777665553
No 63
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=180.96 Aligned_cols=202 Identities=13% Similarity=0.198 Sum_probs=160.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC------------C------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS------------G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTL 62 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t------------g------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV 62 (568)
+|+|||.++++|+.|..|+|+|++. + -.++.+.. |-+.|+++.|+|... +|++|+.|++|
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~-ILiS~srD~tv 196 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRET-ILISGSRDNTV 196 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhh-eEEeccCCCeE
Confidence 5999999999999999999999872 1 12445554 667889999999986 99999999999
Q ss_pred EEEECCCCCce-eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEE
Q 008356 63 HLWDTTGRSPK-VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWIL 137 (568)
Q Consensus 63 ~VWDl~t~~~~-v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~L 137 (568)
++||+.....+ .........+|.++.|+|.|.+|+.|.+.-++++||+.+.++...- +|.+.|+++.+++.+++.
T Consensus 197 KlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lY 276 (430)
T KOG0640|consen 197 KLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLY 276 (430)
T ss_pred EEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEE
Confidence 99999654321 1122334578999999999999999999999999999998876543 588999999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
++++.||.|+|||--...+ +..+........|.+..|..+|+|+ ++.++|..|++|++....+...+
T Consensus 277 vTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevcSa~Ftkn~kyi------------LsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 277 VTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVCSAVFTKNGKYI------------LSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EEeccCCcEEeeccccHHH-HHHHHhhcCCceeeeEEEccCCeEE------------eecCCcceeeeeeecCCceEEEE
Confidence 9999999999999877643 3333322234579999999976665 44567999999999776655544
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=2e-19 Score=189.52 Aligned_cols=212 Identities=20% Similarity=0.333 Sum_probs=168.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEe-eC-----------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAEL-KD-----------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l-~~-----------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~ 68 (568)
.|++.|+.|++.+.....+|+|- .|..+.++ ++ +|-..++|.+|+|..+..|++++.||+++|||+.
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eecCCCCeEEEEecCcceeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 48899999999988899999995 45443332 21 3667789999999999899999999999999997
Q ss_pred CCCceeEEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe--ecCC--CeEEEEEecCCCEE
Q 008356 69 GRSPKVSWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEA--PFSSLAFIDDDWIL 137 (568)
Q Consensus 69 t~~~~v~~l~~-----H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~--~h~~--~ItsLafsPdg~~L 137 (568)
..+.....++. ..-+++.++|++++++|++|+.||.|.+||.+... +...+ .|.. .|+||.|+++|++|
T Consensus 300 ~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 300 NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 66544444332 23468999999999999999999999999986532 33333 4655 89999999999999
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
++-+.|+.++|||+|+.++++.+........+-+.++|+|+.++|+++... .-+...+.+++||...+.....+
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~------~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSA------PNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccc------cCCCCCceEEEEeccceeeEEEe
Confidence 999999999999999998888776655555677889999999999888542 22334678999999888876665
Q ss_pred cc
Q 008356 218 SL 219 (568)
Q Consensus 218 ~~ 219 (568)
..
T Consensus 454 ~i 455 (641)
T KOG0772|consen 454 DI 455 (641)
T ss_pred cC
Confidence 54
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.81 E-value=6.5e-19 Score=175.89 Aligned_cols=194 Identities=15% Similarity=0.249 Sum_probs=161.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|++|+++|++++.|.+|+.||+++|++++.+++ |...|+.+.-+..|..++.++++||+++|||++.... ++ .....
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~-t~~~k 174 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IK-TFENK 174 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEeecccch-hh-ccccc
Confidence 788999999999999999999999999999997 7788998887778888899999999999999998763 22 33446
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCc
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQP 157 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~---~~~ 157 (568)
.+++++.|..++..+.+|+-|+.|++||++.+....+. +|.+.|+.+..+++|.++.+-+-|.+|++||++-. .++
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 67999999999999999999999999999999888877 79999999999999999999999999999999853 233
Q ss_pred eEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 158 LTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 158 v~~l~~~~h~~~V--tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+.++....|.-.+ ...+|+|++. .+-+++.|+.+++||...
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~------------~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGT------------KITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCC------------ccccccccceEEEeeccc
Confidence 5555544444333 3445666544 445556699999999654
No 66
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.81 E-value=7.6e-19 Score=182.13 Aligned_cols=196 Identities=17% Similarity=0.262 Sum_probs=169.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
...+++|+.|..+.++|...++.+..+++ |...|..+.++++.. .+++++.|..|+||....... ......|..+|+
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~-~v~~aSad~~i~vws~~~~s~-~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLD-TVITASADEIIRVWSVPLSSE-PTSSRPHEEPVT 307 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchh-heeecCCcceEEeeccccccC-ccccccccccce
Confidence 46789999999999999999999999998 667788899999988 799999999999999976653 556788999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (568)
Q Consensus 86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~ 162 (568)
.+..+|.+.||++++.|++..+.|++++..+....++ -.+++.+|+|||.+|.+|..|+.|+|||+..+. .+..+
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~F- 385 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKF- 385 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccC-
Confidence 9999999999999999999999999999988777654 348999999999999999999999999999875 23333
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
.+|.++|..++|+.+|-||++ ++.|+.|++||+|+.....++..
T Consensus 386 -pght~~vk~i~FsENGY~Lat------------~add~~V~lwDLRKl~n~kt~~l 429 (506)
T KOG0289|consen 386 -PGHTGPVKAISFSENGYWLAT------------AADDGSVKLWDLRKLKNFKTIQL 429 (506)
T ss_pred -CCCCCceeEEEeccCceEEEE------------EecCCeEEEEEehhhcccceeec
Confidence 489999999999997655544 46699999999998775555443
No 67
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.80 E-value=3.6e-18 Score=174.21 Aligned_cols=190 Identities=17% Similarity=0.295 Sum_probs=156.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|+.+|.+||+|+.+|.|+||+..++.....+.. .-..|.-++|+|.+. +|+.|+.||.|.+|.+..+. ..+.+.+|
T Consensus 113 ~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~Gh 189 (399)
T KOG0296|consen 113 SFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSGH 189 (399)
T ss_pred EEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecCC
Confidence 5899999999999999999999999998888864 334455599999886 89999999999999998864 47789999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----------------------------------------
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----------------------------------------- 119 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----------------------------------------- 119 (568)
..++++=.|.|+|+.++++..||+|++||+.+++++..+
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 999999999999999999999999999999776554321
Q ss_pred -------------------------------------------------------ecCCCeEEEEEecCCCEEEEEEcCC
Q 008356 120 -------------------------------------------------------TYEAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 120 -------------------------------------------------------~h~~~ItsLafsPdg~~LasGs~DG 144 (568)
.|+..|..+.|.+ ..+|++++.||
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc
Confidence 1334455666766 57889999999
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.|+.||.|++ +....+. +|...|.++++.|+++. +++.+.|++.+||++.
T Consensus 349 ~v~~wDaRtG-~l~~~y~--GH~~~Il~f~ls~~~~~------------vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTG-QLKFTYT--GHQMGILDFALSPQKRL------------VVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeecccc-ceEEEEe--cCchheeEEEEcCCCcE------------EEEecCCCeEEEEecC
Confidence 9999999998 4445555 99999999999996555 4555668888888763
No 68
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2e-18 Score=180.53 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=168.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------CCcee
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--------RSPKV 74 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--------~~~~v 74 (568)
+|+|.+|+.|+..|.|++|.+.+|+++..+.+ |-..|+|+.|+.|+. +|++|+.||.|.+|++.. ...+.
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-HYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA-HYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHh-hccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccce
Confidence 57888898888999999999999999988865 778899999999998 899999999999998721 22347
Q ss_pred EEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 75 SWLKQHSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 75 ~~l~~H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
+.+..|.-+|+++...+. ..+|++++.|.++++||+..+..+..+.....|.+++++|-+..+++|+.+|.|.+.++.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh
Confidence 788999999999998873 468999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC-------------CceEEEeecCCCC--CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 153 GKP-------------QPLTVLRACSSSE--AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 153 t~~-------------~~v~~l~~~~h~~--~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
+-. ...+.....+|.+ .|+|++++- ++.+|++|+.||.|+|||+.......++
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~------------DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST------------DGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cCCcccccccccccccccceeeeeccccCCcceeEEEEec------------CccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 432 0111222237777 899999887 4566777788999999999876654444
No 69
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=5.2e-19 Score=192.81 Aligned_cols=184 Identities=17% Similarity=0.247 Sum_probs=159.5
Q ss_pred CEEEEEECCCcEEEEECCCCce---eEE-----eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 7 EHLASISLSGDLILHNLASGAK---AAE-----LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~---v~~-----l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
.+|++++.|++|++|++...+. ... ....|+..|++++++|+.. +++||++|.+.+||++.... ....+.
T Consensus 425 sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~vLs 502 (775)
T KOG0319|consen 425 SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLGVLS 502 (775)
T ss_pred cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEEEee
Confidence 5789999999999999865221 111 2234788899999999987 99999999999999999554 578899
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
+|...|.|+.|++..+.+++++.|++|+||.+.+..++.++ +|...|..+.|-.++..|++++.||.|+||++.+.. +
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-C 581 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-C 581 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-h
Confidence 99999999999999999999999999999999999999999 599999999999999999999999999999999984 4
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
...+. .|.+.|+++..++... .+++++.|+.|.+|.
T Consensus 582 ~~tlD--~H~DrvWaL~~~~~~~------------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 582 EMTLD--AHNDRVWALSVSPLLD------------MFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhh--hccceeEEEeecCccc------------eeEecCCCeEEEEee
Confidence 45565 7999999999888543 456667799999994
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.80 E-value=3.1e-18 Score=181.05 Aligned_cols=200 Identities=15% Similarity=0.213 Sum_probs=155.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeC-C--CeEEEEECCCCCceeEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGD-D--GTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-D--GtV~VWDl~t~~~~v~~ 76 (568)
|+|.|.++|+|...|+|+|||....+. ..+++. -.+.|.+|.|+.+++.++++|-- + |.+.+||--+. +-.
T Consensus 67 ySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v-~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---vGe 142 (603)
T KOG0318|consen 67 YSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQV-LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---VGE 142 (603)
T ss_pred eCCCceEEeecCCcCcEEEEeccCcceeeeeeeee-cccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---cce
Confidence 799999999999999999999865332 234443 56789999999999854444432 2 45777775432 456
Q ss_pred eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 77 LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 77 l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
+.+|...|++++|-| ....+++|++|++|.+|+=.--+-...+ .|..-|.|+.|+|||.++++.+.||+|.+||=.++
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 899999999999999 6788999999999999984433333333 47788999999999999999999999999999988
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
++.-.+-...+|.+.|.+++|+||+. .+++.+.|.+++|||+.......++
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~------------~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDST------------QFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCc------------eEEEecCCceEEEEEeeccceEEEe
Confidence 64333322457999999999999654 4555567999999999776554444
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.9e-18 Score=178.26 Aligned_cols=282 Identities=15% Similarity=0.169 Sum_probs=206.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
.|+++|++||+++.|.+..+|++.... ...++.+ |...|.-+.|+||.+ +|++++.|..+.+||+.++......-
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhhcc
Confidence 389999999999999999999976443 3566776 555677799999998 78888888889999999988544444
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
.+|...+.+++|.||+..+++|+.|+.+..||+.....-..-+ ....|.++++.+||+++++.+.|..|++|+......
T Consensus 309 ~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d 388 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD 388 (519)
T ss_pred cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh
Confidence 4556889999999999999999999999999997644222222 335699999999999999999999999999987632
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCCCC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSA 236 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG 236 (568)
...+ ....+|++++.+.++++++.. -.+..+.+||+....-...+..
T Consensus 389 -r~li---se~~~its~~iS~d~k~~Lvn------------L~~qei~LWDl~e~~lv~kY~G----------------- 435 (519)
T KOG0293|consen 389 -RGLI---SEEQPITSFSISKDGKLALVN------------LQDQEIHLWDLEENKLVRKYFG----------------- 435 (519)
T ss_pred -hccc---cccCceeEEEEcCCCcEEEEE------------cccCeeEEeecchhhHHHHhhc-----------------
Confidence 1222 345789999999977664433 3489999999974333333211
Q ss_pred CCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCCCCCC
Q 008356 237 EASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKPS 316 (568)
Q Consensus 237 ~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~~ 316 (568)
.+...+- -|+=|.+.+|.-+-+.-|| +.+|+|+...|..+..|.+|.|..
T Consensus 436 -----------------------hkq~~fi-IrSCFgg~~~~fiaSGSED------~kvyIWhr~sgkll~~LsGHs~~v 485 (519)
T KOG0293|consen 436 -----------------------HKQGHFI-IRSCFGGGNDKFIASGSED------SKVYIWHRISGKLLAVLSGHSKTV 485 (519)
T ss_pred -----------------------ccccceE-EEeccCCCCcceEEecCCC------ceEEEEEccCCceeEeecCCccee
Confidence 1111111 2233556666777788889 779999999999999999998775
Q ss_pred ccc-cCCCCccccc-ccCCCceeeeeeccCCCCccc
Q 008356 317 SML-FPSSSRRFPY-AEDGSNEHSVFDWKSSSTSKQ 350 (568)
Q Consensus 317 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 350 (568)
-.. | .+ .-|. +-++++|-.|==|+.+..-||
T Consensus 486 NcVsw-NP--~~p~m~ASasDDgtIRIWg~~~~~rq 518 (519)
T KOG0293|consen 486 NCVSW-NP--ADPEMFASASDDGTIRIWGPSDNNRQ 518 (519)
T ss_pred eEEec-CC--CCHHHhhccCCCCeEEEecCCccccC
Confidence 443 4 22 1222 234556667777887766555
No 72
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=176.34 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=152.5
Q ss_pred CEEEEEECCCcEEEEECCC----------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 7 EHLASISLSGDLILHNLAS----------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~t----------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
.+.++-+..|.|+|||+.. .+.+..+.+ |+..=..|+|+|-....|++|..-+.|++|...++
T Consensus 166 ~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 166 VLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred ceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccCccccceEeeeeccC
Confidence 3556667889999999753 124556666 55556789999954445889988899999999776
Q ss_pred Cce--eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---ceeeEeecCCCeEEEEEecCCCEEEEEEcCC
Q 008356 71 SPK--VSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR---RPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 71 ~~~--v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~---~~v~~~~h~~~ItsLafsPdg~~LasGs~DG 144 (568)
.-. ..-+.+|...|-.++|+| ....|++|+.||+|+|||+|.+ .++....|...|+.|.|+.+-.+||+|+.||
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 532 234567999999999999 6788999999999999999998 3444457999999999999888999999999
Q ss_pred eEEEEECCCC--CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 145 RVVFYDIRGK--PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 145 ~V~VWDlrt~--~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+++|||+|+. .+|+..+. .|..+|++|.|+|. +...++.++.|.+|.+||+.-
T Consensus 325 t~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~-----------e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPH-----------EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEEEEhhhccCCCcceeEE--eccCCeeEEEeccc-----------cCceEEeccCCCcEEEEEeec
Confidence 9999999963 35677777 69999999999996 445566666799999999854
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=6.6e-18 Score=168.85 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=159.3
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 1 MYNC-KDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSp-dG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
+|+| ...+|+.++.||+|++|+++. |..+......|.+.|.+++|+.+|. .+++|+.|+.+++||+.+++ +..+.
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~S~Q--~~~v~ 110 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLASGQ--VSQVA 110 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEccCCC--eeeee
Confidence 5889 456677899999999999976 5665555545788999999999997 79999999999999999986 77889
Q ss_pred cCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeEeec-----------------------------------
Q 008356 79 QHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCITY----------------------------------- 121 (568)
Q Consensus 79 ~H~~~VtslafsPdg~--~LaSgs~DGtV~IWDlrt~~~v~~~~h----------------------------------- 121 (568)
.|.++|..+.|-+... .|++|+.|++|++||+|...++..+..
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchh
Confidence 9999999999988544 899999999999999998665543221
Q ss_pred -------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-ceEEEeecCC-------CCCeeEEEEccCCCeEEEec
Q 008356 122 -------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-PLTVLRACSS-------SEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 122 -------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-~v~~l~~~~h-------~~~VtsLafspdg~~Las~s 186 (568)
+-.++|++...|....+.|+-+|+|.|..++...+ .--.++.+.. -..|++|+|+|....
T Consensus 191 k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgt----- 265 (347)
T KOG0647|consen 191 KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGT----- 265 (347)
T ss_pred hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccce-----
Confidence 22367888888877778899899988888876421 1122232211 125788999995443
Q ss_pred cCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCCCCC
Q 008356 187 TCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAE 237 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~ 237 (568)
|++.+.||.+.+||-.. +..+..+...+...+...+...|.
T Consensus 266 -------lvTaGsDGtf~FWDkda---r~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 266 -------LVTAGSDGTFSFWDKDA---RTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred -------EEEecCCceEEEecchh---hhhhhccCcCCCccceeEecCCCC
Confidence 45556699999999654 334444333333334444555554
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.79 E-value=2.7e-17 Score=167.81 Aligned_cols=199 Identities=13% Similarity=0.213 Sum_probs=162.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
.+|+.+++++|+.|..-+||++.++....++.+ |++.|.++.|+.+|. +|+||+-+|.|+||+..++.. ...+..-.
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~-~~~~~~e~ 148 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGE-QWKLDQEV 148 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCce-EEEecCCCccEEEEEcccCce-EEEeeccc
Confidence 578899999999999999999999999889987 888899999999998 999999999999999998874 33444455
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+++ +|..++++=.|.|+|+.++++..||+|++||+.+.. ++..
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~ 227 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ-PLHK 227 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc-eeEE
Confidence 66888999999999999999999999999997666666 799999999999999999999999999999999984 4444
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW 206 (568)
+.. .......++.++..+..++.| ......+++..+....|.+.
T Consensus 228 ~~~-~e~~~~~~~~~~~~~~~~~~g-~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 228 ITQ-AEGLELPCISLNLAGSTLTKG-NSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred ecc-cccCcCCccccccccceeEec-cCCccEEEEccccceEEEec
Confidence 442 224567888888888888777 33333344444433333333
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-17 Score=167.16 Aligned_cols=239 Identities=15% Similarity=0.175 Sum_probs=172.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+|.++.|+++++||.+++||+........++ |..++.+++|.++. .+++|+-||.|+++|+.++. ...+-.|.
T Consensus 21 f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~--~~~igth~ 94 (323)
T KOG1036|consen 21 FSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--HGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGN--EDQIGTHD 94 (323)
T ss_pred EcCcCCcEEEEeccCcEEEEeccchhhhhhee--cCCceeeeeccCCc--eEEEeccCceEEEEEecCCc--ceeeccCC
Confidence 67888889999999999999998877666676 77889999999864 49999999999999999887 56788899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
..|.||.+.+....+++|+.|++|++||.+....+..+.....|.++... ++.|++|+.|..|.+||+|+...+.+.
T Consensus 95 ~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~- 171 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR- 171 (323)
T ss_pred CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-
Confidence 99999999998889999999999999999987777677666788888776 789999999999999999986544311
Q ss_pred eecCCCCCeeEEEEccCCCeEEEecc-------------------------------------------CCCCeEEEEec
Q 008356 162 RACSSSEAVSSLCWQRAKPVFIDETT-------------------------------------------CKAETALLGGA 198 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~s~-------------------------------------------ssd~~~Lls~s 198 (568)
+...-.-.++++++-|++.-.+.++- ..-...+++++
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 11122233444444443222111100 00122467778
Q ss_pred CCCcEEcCCCCCCCccccccccccccCCCCCcccCCCCCCccCccCCCCCCCCc
Q 008356 199 VGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGPSAEASSLTVGGTGEETPQ 252 (568)
Q Consensus 199 ~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~ 252 (568)
.||.|.+||+.+......+ +.-+.+..++..+-.|...++......+..+.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~---~~~~~SI~slsfs~dG~~LAia~sy~ye~~~~ 302 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQL---AKYETSISSLSFSMDGSLLAIASSYQYERADT 302 (323)
T ss_pred CCceEEEccCcchhhhhhc---cCCCCceEEEEeccCCCeEEEEechhhhcCCC
Confidence 8999999998775543322 22233455666777777666665544444433
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.78 E-value=3.5e-18 Score=167.98 Aligned_cols=200 Identities=18% Similarity=0.306 Sum_probs=162.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK----- 73 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~----- 73 (568)
+|+++|..|++|+.|+++.||+++..+.... .++ |.+.|..++|.|....+|++++.|.+|++||++..++.
T Consensus 27 ~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 27 AWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred EEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec
Confidence 5899999999999999999999987765543 344 55566778999888779999999999999997654321
Q ss_pred ----------------------------------------------------------------------------eEEe
Q 008356 74 ----------------------------------------------------------------------------VSWL 77 (568)
Q Consensus 74 ----------------------------------------------------------------------------v~~l 77 (568)
+..+
T Consensus 106 ~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 106 KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 1126
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
+.|...+.||.|+|+|++|++|+.|..+.+||+..--+++.+ .++-+|+.+.|+.+|++||+|++|..|-|=+++++.+
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 678888999999999999999999999999999998888888 6899999999999999999999999999999999965
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
..++ .+.++...|+|+|....|+.+.+..++. ..-..+.|++|-+
T Consensus 266 ~~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~d---~~reag~vKiFG~ 310 (313)
T KOG1407|consen 266 VWEI----PCEGPTFTVAWHPKRPLLAYACDDKDGD---SNREAGTVKIFGL 310 (313)
T ss_pred EEEe----eccCCceeEEecCCCceeeEEecCCCCc---cccccceeEEecC
Confidence 4333 4778999999999988887664433331 1122466777643
No 77
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=1.3e-18 Score=170.12 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=162.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+|+.|.++|++|+.+..++|||++..+ ...++.+ |.+.|+.+.|+...+ .|++..+|++||+||.+++.. ++.+ .
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-htg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~-v~sL-~ 182 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-HTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTE-VQSL-E 182 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcC-CCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcE-EEEE-e
Confidence 588899999999999999999998665 4556776 778889999998876 688889999999999999873 3333 3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
...+|+++.++++|++|.++ ..+.|.+||..+-.++..+.....|.+..++|+..++++|++|..++.||..++.....
T Consensus 183 ~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 55679999999999876655 45679999999999888888888999999999999999999999999999999864333
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
. ..+|.++|.|+.|+|+|. .+.+++.||+|++|...+..+.
T Consensus 262 ~--nkgh~gpVhcVrFSPdGE------------~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 262 Y--NKGHFGPVHCVRFSPDGE------------LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred c--ccCCCCceEEEEECCCCc------------eeeccCCCceEEEEEecCCCch
Confidence 2 238999999999999654 4555678999999988765543
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=4.5e-18 Score=188.37 Aligned_cols=190 Identities=19% Similarity=0.300 Sum_probs=163.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
-+++|++|+.|.+++|||..+|++...+.+ |...+.++...+. ++++|+.|.+|++|+++++.. +..+.+|..+|
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-h~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V 334 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG-HTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGAC-LNLLRGHTGPV 334 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecC-CCceEEEEEccCc---eEeeccCCceEEEEeccCcce-EEEeccccccE
Confidence 367899999999999999999999999997 7888888876643 788899999999999998873 67777899999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
+++..+ +.++++|+.|++|++||+++++++..+ +|..+|.++.+... .+++.|+.|+.|++||+++..+++..+.
T Consensus 335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~- 410 (537)
T KOG0274|consen 335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ- 410 (537)
T ss_pred EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-
Confidence 999998 899999999999999999999999888 79999999988765 8999999999999999999844555565
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~ 218 (568)
+|..-|..+.+. ..+|++++.|+.|++||.........+.
T Consensus 411 -~h~~~v~~l~~~--------------~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 411 -GHTSLVSSLLLR--------------DNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred -CCcccccccccc--------------cceeEeccccccEEEeecccCceeeeec
Confidence 788878666543 3467888889999999998877665543
No 79
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.78 E-value=8.6e-19 Score=184.06 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=161.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+.|||+.|++|+.-.+|.|||+..... ..++.. ....+.+++.+||.+ +.+++..||.|.|||+.+.. +++.+.+
T Consensus 473 L~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~VrqfqG 549 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQG 549 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeecccC
Confidence 468999999999999999999976543 333332 345678899999997 89999999999999998876 6899999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
|.+.+.||.+++||..|.+|+-|.+|+.||+++++.+........|.++.++|++.+|++|.+++.|.|.......+
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k--- 626 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK--- 626 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc---
Confidence 99999999999999999999999999999999999888888889999999999999999999999999998877632
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
+..+.|...|.++.|.+.|+|+++. +.|+.+..|..
T Consensus 627 -yqlhlheScVLSlKFa~cGkwfvSt------------GkDnlLnawrt 662 (705)
T KOG0639|consen 627 -YQLHLHESCVLSLKFAYCGKWFVST------------GKDNLLNAWRT 662 (705)
T ss_pred -eeecccccEEEEEEecccCceeeec------------CchhhhhhccC
Confidence 3344789999999999999887765 34666666654
No 80
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.8e-18 Score=189.39 Aligned_cols=195 Identities=19% Similarity=0.299 Sum_probs=166.0
Q ss_pred ccCC-CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 2 YNCK-DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
||+- -.+|++|+.||.|++||++..+-...+.+ ..+.|++|+|+|...+.|+++.+.|.|++||++........+.+|
T Consensus 141 fh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH 219 (839)
T KOG0269|consen 141 FHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH 219 (839)
T ss_pred eccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc
Confidence 4443 36899999999999999998888888876 778899999999888899999999999999998776567788999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEeecCCCeEEEEEecCCC-EEEEEE--cCCeEEEEECCCCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCITYEAPFSSLAFIDDDW-ILTAGT--SNGRVVFYDIRGKP 155 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~~h~~~ItsLafsPdg~-~LasGs--~DG~V~VWDlrt~~ 155 (568)
.++|.|+.|+|++.+|++||.|+.|+|||..+.+ .+.++....++.+++|.|... .|++++ .|-.|+|||++...
T Consensus 220 ~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 220 NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 9999999999999999999999999999998654 456667889999999999754 455544 47789999999988
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
-|..++. .|...++.++|.. .+...+++++.|+.|....++.
T Consensus 300 IP~~t~~--eH~~~vt~i~W~~-----------~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 300 IPYATFL--EHTDSVTGIAWDS-----------GDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred ccceeee--ccCccccceeccC-----------CCceeeEeecCccHHHHhhhhc
Confidence 8888877 7999999999975 2667788888899888766553
No 81
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.78 E-value=5.2e-19 Score=179.06 Aligned_cols=186 Identities=19% Similarity=0.301 Sum_probs=156.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
++.++++++.|..|+|||+..... ...+.+ |...|+.+.|+. + ++++++.|.+|++|++.+.+. ++.+.+|.
T Consensus 286 ~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~--k-yIVsASgDRTikvW~~st~ef-vRtl~gHk 360 (499)
T KOG0281|consen 286 SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD--K-YIVSASGDRTIKVWSTSTCEF-VRTLNGHK 360 (499)
T ss_pred eCCEEEEecCCceeEEEeccCchHHHHHHHHhh-hhhheeeecccc--c-eEEEecCCceEEEEeccceee-ehhhhccc
Confidence 356899999999999999976552 234444 778899998874 3 899999999999999999884 88899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce--
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL-- 158 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v-- 158 (568)
..|.|+.+. ++++++|+.|.+|++||+..|.+++.+ +|+.-|.|+.|+ .+.+++|..||+|+|||+.....+.
T Consensus 361 RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 361 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccc
Confidence 999998886 899999999999999999999999888 799999999997 6789999999999999998765441
Q ss_pred ----EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 159 ----TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 159 ----~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.......|.+.|..+.|. +..+++++.|.+|.+||...+.+
T Consensus 437 ~~~~Cl~~lv~hsgRVFrLQFD--------------~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 437 ASTLCLRTLVEHSGRVFRLQFD--------------EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ccchHHHhhhhccceeEEEeec--------------ceEEEeccCCCeEEEEEcCCCCc
Confidence 112223688899999885 45788888899999999877554
No 82
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5.7e-18 Score=164.44 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=182.3
Q ss_pred eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (568)
Q Consensus 29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW 108 (568)
...+.. +++.|+++.|+-+|+ +.++++.|.+|++|+...+. .++...+|...|.+++.+.|...|++|+.|+.|.+|
T Consensus 10 ~~~l~~-~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~-liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDC-AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGA-LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecc-cccceEEEEEccCCC-EEEEcCCCceEEeecccccc-eeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 344554 778999999999998 89999999999999997776 488899999999999999999999999999999999
Q ss_pred ECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC-CCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 109 DPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK-PQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 109 Dlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~-~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
|+.+|+.++.+ +|.+.|+.++|+.+...+++|+.|..|++||.|.. ..|++++. .....|.++....
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild--ea~D~V~Si~v~~--------- 155 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD--EAKDGVSSIDVAE--------- 155 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh--hhcCceeEEEecc---------
Confidence 99999999988 79999999999999999999999999999999974 35667666 4567788887654
Q ss_pred cCCCCeEEEEecCCCcEEcCCCCCCCccccccccccc-----cCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCC
Q 008356 187 TCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAV-----SGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGP 261 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~-----~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~ 261 (568)
..+++++.||+++.||+|......-+. +.++ +.......+++.++......-.+++- -....|..
T Consensus 156 -----heIvaGS~DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl----L~sYkGhk 225 (307)
T KOG0316|consen 156 -----HEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL----LKSYKGHK 225 (307)
T ss_pred -----cEEEeeccCCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHH----HHHhcccc
Confidence 468888899999999999765433221 1111 11111111211111111110000000 00001111
Q ss_pred ceeeecCCCCCCcCCcccccccccccccCCCCcccccccCcCcccccccCCCCC
Q 008356 262 LARLHAPRSSYNFKDDMEVFSPLVDVQPITPSLDKLWDGHEGAKKDHLPIDKKP 315 (568)
Q Consensus 262 ~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~~~~w~~~~~~~~~~~~~~~~~ 315 (568)
....+. +--+ ...|.-||+--|| -.+++||--+++.+..|++..++
T Consensus 226 n~eykl-dc~l-~qsdthV~sgSED------G~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 226 NMEYKL-DCCL-NQSDTHVFSGSED------GKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred cceeee-eeee-cccceeEEeccCC------ceEEEEEeccceeeeeeccCCce
Confidence 111110 0001 1234567888888 66999999999999999988887
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.1e-17 Score=185.28 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=155.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+. .++|++++.|.+|+||++...++++.|. |.+.|+||+|+|.++++|++|+-||.|+||++...+ +..+..-.
T Consensus 377 WSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~ 451 (712)
T KOG0283|consen 377 WSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLR 451 (712)
T ss_pred ccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehhhh
Confidence 553 5689999999999999999999999998 899999999999988899999999999999998876 44555555
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsPd-g~~LasGs~DG~V~VWDl 151 (568)
.-|++++|.|||+..+.|+.+|.+++|+++..+.+..+. ....|+.+.|.|. ...|++.+.|.+|+|||.
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 889999999999999999999999999998876654331 1237999999984 446888899999999999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
+.. .++..++.+.....-....|..+|++|++ ++.|..|++|+...+..
T Consensus 532 ~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs------------~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 532 RDK-DLVHKFKGFRNTSSQISASFSSDGKHIVS------------ASEDSWVYIWKNDSFNS 580 (712)
T ss_pred cch-hhhhhhcccccCCcceeeeEccCCCEEEE------------eecCceEEEEeCCCCcc
Confidence 775 34455553333333445677776665544 46799999999866553
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.4e-17 Score=167.29 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=153.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
..++.++|+|+.|-+|+|||+.....+..+.. |.+.|+++.|.++-. ..|++|++||.|.+|+...-. .+..+++|.
T Consensus 50 AVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~ 127 (362)
T KOG0294|consen 50 AVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHK 127 (362)
T ss_pred EecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-Eeeeecccc
Confidence 35789999999999999999988888877775 788999999998752 248899999999999998775 588999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC---------------------------------------
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--------------------------------------- 122 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~--------------------------------------- 122 (568)
+.|+.++.+|.+++-++.+.|+.+++||+-+|+.-.+....
T Consensus 128 ~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~ 207 (362)
T KOG0294|consen 128 GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN 207 (362)
T ss_pred cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc
Confidence 99999999999999999999999999999776543322111
Q ss_pred -CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356 123 -APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (568)
Q Consensus 123 -~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg 201 (568)
..+.|+.|. ++.+|++|..|+.|.+||.+.. .+...+. +|...|..+.+-- .....+|++.+.||
T Consensus 208 ~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~--AH~~RVK~i~~~~----------~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 208 PKRILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFL--AHENRVKDIASYT----------NPEHEYLVTASSDG 273 (362)
T ss_pred cccceeeeec-CCceEEEecCCceEEEeccCCC-ccceeee--cchhheeeeEEEe----------cCCceEEEEeccCc
Confidence 123333333 4567888888999999998874 3444444 7999999988543 23557788888899
Q ss_pred cEEcCCCCCC
Q 008356 202 SILMPDPLPS 211 (568)
Q Consensus 202 ~V~VWDlr~~ 211 (568)
.|+|||++.-
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999764
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.4e-18 Score=187.19 Aligned_cols=197 Identities=18% Similarity=0.258 Sum_probs=161.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 008356 4 CKDEHLASISLSGDLILHNLASGA------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~ 76 (568)
|++++|++||.||.|++|+..... .+..++ +|.+.|+++..+.+++ .|++++.|-+|++|+..... ....+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhh
Confidence 567889999999999999986332 244555 4888999999999987 79999999999999996552 23667
Q ss_pred eccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc--eeeEe----------ecCCCeEEEEEecCCCEEEEEEcC
Q 008356 77 LKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRR--PSSCI----------TYEAPFSSLAFIDDDWILTAGTSN 143 (568)
Q Consensus 77 l~~H~~~Vtslaf-sPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~----------~h~~~ItsLafsPdg~~LasGs~D 143 (568)
+..|.+.|.|+++ -++..++++||.|+.|.+||+.++. .+..+ ++...|.+++.++.|..|+.|+.+
T Consensus 113 ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE 192 (735)
T ss_pred hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc
Confidence 8899999999999 6788999999999999999999772 22221 467789999999999999999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
+.+++||+++.++..+ ++ +|..-|..+..+.+| ..+++++.|++|++||++-..+..++
T Consensus 193 k~lr~wDprt~~kimk-Lr--GHTdNVr~ll~~dDG------------t~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMK-LR--GHTDNVRVLLVNDDG------------TRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cceEEeccccccceee-ee--ccccceEEEEEcCCC------------CeEeecCCCceEEeeeccccceeeeE
Confidence 9999999999864333 33 899999999988854 45666677999999999877665554
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=1.8e-18 Score=176.13 Aligned_cols=197 Identities=19% Similarity=0.320 Sum_probs=159.7
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------------
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------------- 71 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------------- 71 (568)
..+++|+.||.|+|||+.+..+...+++ |.+.|+.|++.. + .++++++|.+|+.|.++..-
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~-~--~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ-T--SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeec-ccCceeeEEecc-c--ceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 4578999999999999999999999997 888999999987 2 58999999999999743210
Q ss_pred -----------c-----------eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEE
Q 008356 72 -----------P-----------KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSL 128 (568)
Q Consensus 72 -----------~-----------~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsL 128 (568)
. ++..+.-....|.++.|+| ....|++|+.|+.|.+||+++..++..+-....-+.|
T Consensus 156 ~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~I 235 (433)
T KOG0268|consen 156 HRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTI 235 (433)
T ss_pred ccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccce
Confidence 0 0111222334578888899 6677888889999999999999999888888888999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec----------------------
Q 008356 129 AFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET---------------------- 186 (568)
Q Consensus 129 afsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s---------------------- 186 (568)
+|+|++..+++|.+|..++.||++....++.+.. +|...|.+++|+|.|+-+++++
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999988999999999999999999888888887 8999999999999988777654
Q ss_pred ---------cCCCCeEEEEecCCCcEEcCCCC
Q 008356 187 ---------TCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 187 ---------~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
++.|..++++|+.|+.|++|.-.
T Consensus 314 RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 23355566777777777777543
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.8e-17 Score=172.71 Aligned_cols=177 Identities=20% Similarity=0.257 Sum_probs=148.1
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
|+|++ ..|++|++|+.+++||+.+.....++.+ |.+.|+|.+|+|..++++++|+.||.|++||.+.... ......|
T Consensus 118 f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnh 195 (487)
T KOG0310|consen 118 FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNH 195 (487)
T ss_pred ecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecC
Confidence 66765 5677888899999999988876557776 8899999999999999999999999999999987753 3344569
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
..+|..+.+.|.|..|++++.. .|++||+.+|. .+... .|...|+|+++..++..|++|+-|+.|++||+.+.
T Consensus 196 g~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---- 270 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---- 270 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----
Confidence 9999999999999999998855 59999999654 44444 59999999999999999999999999999997655
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
++.....-.++|.+++.+|+++.++.+
T Consensus 271 Kvv~s~~~~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 271 KVVHSWKYPGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEEeeecccceeeEEecCCCceEEEe
Confidence 445555678999999999976666555
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=3.5e-18 Score=171.44 Aligned_cols=189 Identities=14% Similarity=0.244 Sum_probs=166.3
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC------CCC-----------
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT------TGR----------- 70 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl------~t~----------- 70 (568)
.+.+++.|.+.+||.+++++++..+.+ |.+.|++|+|++.+. ++++++.|++.+||.. ..+
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ceeecccccceeEEeeccccceeeecc-cccceeeEEeccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 567888999999999999999999998 778899999999887 9999999999999972 100
Q ss_pred ----------------------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEE
Q 008356 71 ----------------------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSS 127 (568)
Q Consensus 71 ----------------------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~Its 127 (568)
..++..+.+|...|.+..|...++.+++++.|++-.+||+++++++..+ +|+...+.
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTH 319 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccc
Confidence 0124457889999999999999999999999999999999999999888 79999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 128 LAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 128 LafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
++-+|..+++++.+.|-+.++||.+..-+.+.+++ +|...|+++.|..+ ..+++++.|++|++||
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ--GHtdtVTS~vF~~d-------------d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ--GHTDTVTSVVFNTD-------------DRVVSGSDDRTVKVWD 384 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhhcceeeeec--ccccceeEEEEecC-------------CceeecCCCceEEEee
Confidence 99999999999999999999999997766667777 99999999999874 3467888899999999
Q ss_pred CCCCCc
Q 008356 208 PLPSVT 213 (568)
Q Consensus 208 lr~~~~ 213 (568)
++++..
T Consensus 385 LrNMRs 390 (481)
T KOG0300|consen 385 LRNMRS 390 (481)
T ss_pred eccccC
Confidence 998764
No 89
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.7e-19 Score=193.46 Aligned_cols=194 Identities=19% Similarity=0.235 Sum_probs=169.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
.++.+++|+.|-.+-+|.+.....+..+.+ |...|.+|.|+.... +|++|..+|+|++||+...+ .++.+.+|...+
T Consensus 39 s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 39 SSRSLVTGGEDEKVNLWAIGKPNAITSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNI 115 (825)
T ss_pred cceeeccCCCceeeccccccCCchhheeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhh-hhhhhhccccCc
Confidence 357788999999999999887777777886 888999999999987 89999999999999998776 478999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
..++|+|-+.+++.|+.|..+++||++...+...+ .|...+.+++|.|+|++++.|++|..|+|||+..++ ....+.
T Consensus 116 ~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-~~~ef~- 193 (825)
T KOG0267|consen 116 TSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-LSKEFK- 193 (825)
T ss_pred ceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-cccccc-
Confidence 99999999999999999999999999987787777 588889999999999999999999999999998873 334444
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
.|.+.|..+.|+|. +.++..++.|+.|++||++.|....+
T Consensus 194 -~~e~~v~sle~hp~------------e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 194 -SHEGKVQSLEFHPL------------EVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred -cccccccccccCch------------hhhhccCCCCceeeeeccceeEEeec
Confidence 69999999999994 45566667799999999998775443
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.76 E-value=2.6e-17 Score=168.65 Aligned_cols=189 Identities=19% Similarity=0.299 Sum_probs=153.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC-------------------------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEe
Q 008356 3 NCKDEHLASISLSGDLILHNLASG-------------------------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAG 57 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg-------------------------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs 57 (568)
.++|.++++|+.|..|.||+.++. ..+..+.+ |.+.|.++.|++.+ .+++++
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w~d~~--v~yS~S 278 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVWSDAT--VIYSVS 278 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEEcCCC--ceEeec
Confidence 578999999999999999993210 12334454 88899999999844 699999
Q ss_pred CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ee--eEeecCCCeEEEEEecC
Q 008356 58 DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR--PS--SCITYEAPFSSLAFIDD 133 (568)
Q Consensus 58 ~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v--~~~~h~~~ItsLafsPd 133 (568)
+|.+|+.||+.++.. ...+ .....++|++++|..++|++|+.|..|++||.|++. .+ ..++|...|.++.|+|.
T Consensus 279 wDHTIk~WDletg~~-~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGL-KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred ccceEEEEEeecccc-eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 999999999988874 3333 345669999999999999999999999999999864 22 23379999999999995
Q ss_pred -CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 134 -DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 134 -g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
...|++|+.|+++++||+|....++..+. +|...|.++.|.. +..+++|+.|.+|+++.-.++
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~~-------------~~~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWNE-------------GGLIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEeccC-------------CceEEeccCcceEEEeccccc
Confidence 56788899999999999999877777666 8999999999975 346777788999999875543
No 91
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.3e-17 Score=180.15 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=161.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECC---C--CceeEEeeCC------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLA---S--GAKAAELKDP------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~---t--g~~v~~l~~~------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
.+||++.+++|+.|.+|++||.. . +...+.+.-+ -.+.|.|+.++||++ +|+.+--|.+|+||-+++.
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtl 540 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTL 540 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecce
Confidence 47999999999999999999964 1 2211112211 246788999999998 8999999999999999998
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
+. ...+.+|.-+|.|++.+||+++|+||+.|+.|++|-+.-|.+-..+ .|++.|.++.|.|....+.+++.|+.|+-|
T Consensus 541 KF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 541 KF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ee-eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence 73 6679999999999999999999999999999999999998877655 899999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|-.... .+..+. +|...|+|++..|+|.+++++ +.|..|++|.-.
T Consensus 620 Dg~kFe-~iq~L~--~H~~ev~cLav~~~G~~vvs~------------shD~sIRlwE~t 664 (888)
T KOG0306|consen 620 DGEKFE-EIQKLD--GHHSEVWCLAVSPNGSFVVSS------------SHDKSIRLWERT 664 (888)
T ss_pred chhhhh-hheeec--cchheeeeeEEcCCCCeEEec------------cCCceeEeeecc
Confidence 988764 334444 899999999999987776665 558899999754
No 92
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=2.6e-17 Score=171.33 Aligned_cols=194 Identities=16% Similarity=0.253 Sum_probs=159.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCcee---EEe-----------------eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356 5 KDEHLASISLSGDLILHNLASGAKA---AEL-----------------KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v---~~l-----------------~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~V 64 (568)
.|+++|.|..|..|.|||+.--..+ ..+ ..+|.+.|-.+.|+.+-+++|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 4789999999999999998522110 000 11466777789999999999999999999999
Q ss_pred EECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEeecCCCeEEEEEecC-CCEEEEEE
Q 008356 65 WDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDD-DWILTAGT 141 (568)
Q Consensus 65 WDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~~h~~~ItsLafsPd-g~~LasGs 141 (568)
||+.++++ ...+..|...|.+++|+| ...+|++|+.|++|.+.|+|... .-..+...+.|-.++|+|. ...++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999986 566778999999999999 78899999999999999999533 3344567889999999996 46777888
Q ss_pred cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 142 SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 142 ~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.||+|+-+|+|...+++..++ .|.+.|.+|+++..- ..++.+++.|+.|++|++..-.
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~--AHd~~ISgl~~n~~~-----------p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLK--AHDDEISGLSVNIQT-----------PGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCceEEeeecCCCCCceeEEE--eccCCcceEEecCCC-----------CcceeeccccceEEEEeecCCC
Confidence 999999999999888887777 799999999998853 3356667789999999976533
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.8e-17 Score=173.05 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=159.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
|.++||++||+|+.|..|.||+..+.+.+..+++ |.+.|.+++|-.... -+++++.|+.|++|+++... .+..+.+|
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-hr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-~vetlyGH 285 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKG-HRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-YVETLYGH 285 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccc-cccceeeeeeecCcc-ceeeeecCCceEEEehhHhH-HHHHHhCC
Confidence 4689999999999999999999999999999887 778889999986554 79999999999999998876 47789999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
...|.+|......+.+.+|+.|+++++|++.....+...++.+.+.|++|-.+ ..+++|+.||.|.+|++...+ |+.+
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk-plf~ 363 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK-PLFT 363 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC-ceeE
Confidence 99999999988888888888999999999976665555578889999999865 678999999999999998764 4433
Q ss_pred Eee-c---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 161 LRA-C---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 161 l~~-~---------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.+. + .+..+|++++..| ...++++++.+|+|++|-+...
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~------------~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIP------------GSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeccccccCCccccccccceeeeEecc------------cCceEEecCCCCceEEEEecCC
Confidence 321 1 1222677777766 4456666677999999987654
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.75 E-value=5.6e-17 Score=168.41 Aligned_cols=180 Identities=14% Similarity=0.232 Sum_probs=152.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH 80 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H 80 (568)
|+++...+++++.|-.|+||............. |++.|+.+..+|.|+ +|++++.|++..+.|++.+........ ..
T Consensus 269 ~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~-h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s 346 (506)
T KOG0289|consen 269 FHKDLDTVITASADEIIRVWSVPLSSEPTSSRP-HEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETS 346 (506)
T ss_pred eccchhheeecCCcceEEeeccccccCcccccc-ccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccc
Confidence 678888999999999999999876665555554 888999999999999 899999999999999998875433222 23
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
.-.+++.+|+|||.+|.+|..|+.|++||+..+..+..| +|.++|..++|+.+|.||+++..|+.|++||+|..+ .++
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-n~k 425 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-NFK 425 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-ccc
Confidence 345899999999999999999999999999999888777 699999999999999999999999999999999874 334
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
.+.. .....|.+++|++.|.+|+.+
T Consensus 426 t~~l-~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 426 TIQL-DEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred eeec-cccccceeEEEcCCCCeEEee
Confidence 4432 233479999999998888776
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=152.86 Aligned_cols=194 Identities=14% Similarity=0.182 Sum_probs=146.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECC------CC--------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLA------SG--------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~------tg--------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD 66 (568)
+|+|.|.+.++|+...+++|.... .+ ..++.-..||++.|.|.+|+|+|+ +|++|+.|.+|++..
T Consensus 39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~ 117 (350)
T KOG0641|consen 39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLP 117 (350)
T ss_pred EecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCCceEEEEe
Confidence 589999999999999998886432 11 122333457899999999999998 999999999999987
Q ss_pred CCCCCce----eEEeccCCCCeEEEEEcC----------------------------------------------CCCEE
Q 008356 67 TTGRSPK----VSWLKQHSAPTAGISFSS----------------------------------------------DDKII 96 (568)
Q Consensus 67 l~t~~~~----v~~l~~H~~~VtslafsP----------------------------------------------dg~~L 96 (568)
++...+. ...+.-|.+.|..++|.. ++-.|
T Consensus 118 fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~ 197 (350)
T KOG0641|consen 118 FNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMF 197 (350)
T ss_pred cccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEE
Confidence 6432211 112333444444444321 35567
Q ss_pred EEEeCCCeEEEEECCCCceeeEee---c-----CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC
Q 008356 97 ASVGLDKKLYTYDPGSRRPSSCIT---Y-----EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 97 aSgs~DGtV~IWDlrt~~~v~~~~---h-----~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
++|+.|.+|++||++-..++.++. | ...|.+++..|.|++|++|..|....+||++.+. +++.+. .|..
T Consensus 198 ~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~--phsa 274 (350)
T KOG0641|consen 198 ASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFH--PHSA 274 (350)
T ss_pred EccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeC--CCcc
Confidence 789999999999999988888773 2 2468999999999999999999999999999883 444444 8999
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
.|+++.|+|. ..++++++.|..|++-|+.-
T Consensus 275 dir~vrfsp~------------a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 275 DIRCVRFSPG------------AHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred ceeEEEeCCC------------ceEEEEecccceEEEeeccc
Confidence 9999999994 45566667899999988753
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=6.2e-17 Score=174.70 Aligned_cols=194 Identities=20% Similarity=0.264 Sum_probs=160.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 008356 3 NCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGDDGTLHLWDTTGRSP------- 72 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Laf-spdg~~lLaTgs~DGtV~VWDl~t~~~------- 72 (568)
..+++.|++++.|-+|++|+...+. ++..+.. |.+.|.|+++ .++.. ++++|+-|+.|+|||+..+..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~-H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT-HKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhc-ccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc
Confidence 4577899999999999999998763 4555654 8899999999 55554 899999999999999986521
Q ss_pred --eeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356 73 --KVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (568)
Q Consensus 73 --~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V 148 (568)
....+. ++...|++++.++.+..|++|+..+.|++||.++++.+..+ +|...|.++..++||..+++++.||+|++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEe
Confidence 122333 78899999999999999999999999999999998766554 89999999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
||+..+.+ +..+. .|...|+++..+|+ -..+++|+.|+.|..-|++.+..
T Consensus 240 WdLgqQrC-l~T~~--vH~e~VWaL~~~~s------------f~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 240 WDLGQQRC-LATYI--VHKEGVWALQSSPS------------FTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred eeccccce-eeeEE--eccCceEEEeeCCC------------cceEEecCCCCcEEecccCCchh
Confidence 99998854 44444 68888999988774 34566777799999999988653
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.2e-17 Score=159.97 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=156.6
Q ss_pred CCCEEEEEECCCcEEEEECCCC---ceeEEeeCCCCCcEEEEEEcc--CCCeEEEEEeCCCeEEEEECCCCC-ceeEEec
Q 008356 5 KDEHLASISLSGDLILHNLASG---AKAAELKDPNEQVLRVLDYSR--NSRHLLVTAGDDGTLHLWDTTGRS-PKVSWLK 78 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg---~~v~~l~~~h~~~Vs~Lafsp--dg~~lLaTgs~DGtV~VWDl~t~~-~~v~~l~ 78 (568)
-|++||+++.|++|+||.++.. +++.++.+ |.++|..++|.+ .|. +|++++.||.|.||.-.++. .+.....
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~~ 99 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEHA 99 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhhh
Confidence 4789999999999999998753 46778887 788889999987 676 99999999999999987664 2244566
Q ss_pred cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-c-ee--eEeecCCCeEEEEEecC---C-----------CEEE
Q 008356 79 QHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-R-PS--SCITYEAPFSSLAFIDD---D-----------WILT 138 (568)
Q Consensus 79 ~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~-~-~v--~~~~h~~~ItsLafsPd---g-----------~~La 138 (568)
.|...|++++|.| .|-.|++++.||.|.|.+.+.. . .. ....|.-.|++++|.|- | +.|+
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 7999999999999 5678899999999999998764 2 11 22368889999999985 4 6799
Q ss_pred EEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 139 AGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+|+.|..|+||+.....-.. ..+. +|.+.|+.++|.|.- ......+++++.||.|.||-.+
T Consensus 180 SgGcDn~VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~--------gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 180 SGGCDNLVKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSV--------GLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCCccceeeeecCCcchhhhhhhh--hcchhhhhhhhcccc--------CCCceeeEEecCCCcEEEEEec
Confidence 99999999999998752111 2244 899999999999963 2355678999999999999766
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.73 E-value=1.1e-16 Score=181.05 Aligned_cols=180 Identities=12% Similarity=0.236 Sum_probs=143.0
Q ss_pred ccCCCCEEEEEE--CCCcEEEEECCC------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356 2 YNCKDEHLASIS--LSGDLILHNLAS------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (568)
Q Consensus 2 fSpdG~~LasGs--~DG~V~VWDl~t------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl 67 (568)
.+|||..+++|+ .||.++||+.+. .+.++.+.. |.+.|+|+.|++||+ +||+|++|+.|.||+.
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGS-YLASGSDDRLVMIWER 98 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCC-eEeeccCcceEEEeee
Confidence 479999999999 899999998642 223445554 788999999999998 8999999999999998
Q ss_pred CC-----------CC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEE
Q 008356 68 TG-----------RS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLA 129 (568)
Q Consensus 68 ~t-----------~~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLa 129 (568)
.. +. ..+..+.+|...|.+++|+|++.+|++++.|++|.+||.++.+.+..+ .|...|..+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 62 00 125568899999999999999999999999999999999999887777 7999999999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec----CCCCCeeEEEEccCCCeEEE
Q 008356 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC----SSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~----~h~~~VtsLafspdg~~Las 184 (568)
|+|-|+|||+-+.|++|+||++..- ...+.+... ....-.+.+.|+|||++|++
T Consensus 179 ~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 179 WDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecc
Confidence 9999999999999999999996642 112222110 11223556666666666653
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.73 E-value=1e-16 Score=175.09 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=166.9
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---C--C-CceeE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---G--R-SPKVS 75 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---t--~-~~~v~ 75 (568)
|-|.++++++|...|.+.|||+.....+..+++ |.+.|..++..|++. .+++|+.|.+|++||.. . + +.++.
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-HdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRA-HDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeehhhhhhhhhc-cccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 678889999999999999999999888888885 889999999999998 79999999999999972 1 1 11111
Q ss_pred -----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEeecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 76 -----WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 76 -----~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
..-.-...|.|+.++||+++|+.+--|.+|++|-+.+-+.. ..++|.=+|.|+.++||++.+++|+.|..|+||
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 11223567999999999999999999999999999987654 444899999999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~ 218 (568)
-++-+.+- +.+ ++|...|.++.|.|. ...+++++.|+.|+.||-.+|.....+.
T Consensus 578 GLdFGDCH-KS~--fAHdDSvm~V~F~P~------------~~~FFt~gKD~kvKqWDg~kFe~iq~L~ 631 (888)
T KOG0306|consen 578 GLDFGDCH-KSF--FAHDDSVMSVQFLPK------------THLFFTCGKDGKVKQWDGEKFEEIQKLD 631 (888)
T ss_pred ccccchhh-hhh--hcccCceeEEEEccc------------ceeEEEecCcceEEeechhhhhhheeec
Confidence 99877542 323 379999999999994 4456667889999999999888765553
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-16 Score=172.65 Aligned_cols=195 Identities=16% Similarity=0.260 Sum_probs=157.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-C
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-H 80 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H 80 (568)
|+ ..+.|++|. ...|++|+..+++....... +.+.|+++.|+++|. +|++|..+|.|.|||....+. +..+.. |
T Consensus 185 Ws-s~n~laVal-g~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~-~~~~~~~h 259 (484)
T KOG0305|consen 185 WS-SANVLAVAL-GQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK-TRTLRGSH 259 (484)
T ss_pred cc-cCCeEEEEe-cceEEEEecCCCceEEeEec-CCCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc-cccccCCc
Confidence 45 345666664 45799999998886655554 378899999999998 799999999999999987763 666777 9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
...|.+++|+ ...+.+|+.|+.|..+|++..+.... + .|...|..++|++|+++||+|+.|+.|.|||...... .
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-K 336 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-c
Confidence 9999999999 78899999999999999998765544 3 6999999999999999999999999999999966543 3
Q ss_pred EEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~-~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
..+. .|.+.|..++|+|..+ .||+++ |+.|++|++||+........
T Consensus 337 ~~~~--~H~aAVKA~awcP~q~~lLAsGG----------Gs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 337 FTFT--EHTAAVKALAWCPWQSGLLATGG----------GSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred EEEe--ccceeeeEeeeCCCccCceEEcC----------CCcccEEEEEEcCCCcEecc
Confidence 3333 7999999999999643 334442 24599999999885544333
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.73 E-value=6.1e-17 Score=165.78 Aligned_cols=176 Identities=18% Similarity=0.334 Sum_probs=139.3
Q ss_pred ccCC-CCEEEEEECCCcEEEEECCCCcee---EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEE
Q 008356 2 YNCK-DEHLASISLSGDLILHNLASGAKA---AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSW 76 (568)
Q Consensus 2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v---~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~ 76 (568)
|+|- ...|++|..-+.|++|...++.-. ..+.+ |...|.+++|+|..+.+|++|+.||+|+|||++.+. .....
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 6662 235888888899999999887632 23455 788899999999999999999999999999998763 22334
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEEC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDl 151 (568)
.+.|...|+.|.|+.+-.+|++|+.||+++|||+|. ++++..+ .|..+|+++.|+|. ...|++++.|..|.|||+
T Consensus 298 ~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 589999999999999777999999999999999986 5667777 59999999999995 578888999999999999
Q ss_pred CCCCC---------------ceEEEeecCCCCCeeEEEEccC
Q 008356 152 RGKPQ---------------PLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 152 rt~~~---------------~v~~l~~~~h~~~VtsLafspd 178 (568)
..... |.+.+-.+..+..|..+.|++.
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 64211 1222222233456888999986
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.72 E-value=1.4e-16 Score=180.41 Aligned_cols=191 Identities=16% Similarity=0.245 Sum_probs=153.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC------------------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLAS------------------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~t------------------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~ 63 (568)
|++||++||+|++|+.|.||+... .+.+..+.+ |...|.+++|+|++. +|++++.|++|.
T Consensus 77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~-~lvS~s~DnsVi 154 (942)
T KOG0973|consen 77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDS-LLVSVSLDNSVI 154 (942)
T ss_pred ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCcc-EEEEecccceEE
Confidence 899999999999999999999762 124566776 777788899999987 999999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------------
Q 008356 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---------------------------- 115 (568)
Q Consensus 64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~---------------------------- 115 (568)
|||..+.+ .+..+++|...|..+.|.|-|++|++-+.|++|+||++.+-..
T Consensus 155 iwn~~tF~-~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 155 IWNAKTFE-LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred EEccccce-eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 99999884 6889999999999999999999999999999999999632110
Q ss_pred -------------------------eeEeecCCCeEEEEEecC-----CC------------EEEEEEcCCeEEEEECCC
Q 008356 116 -------------------------SSCITYEAPFSSLAFIDD-----DW------------ILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 116 -------------------------v~~~~h~~~ItsLafsPd-----g~------------~LasGs~DG~V~VWDlrt 153 (568)
+..++|.+++.+++|+|. .+ ++|+|+.|+.|.||....
T Consensus 234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 011358889999999982 12 788899999999999866
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
. +|+.+... --...|..++|+|||-. |+.++.||+|.+..+.
T Consensus 314 ~-RPl~vi~~-lf~~SI~DmsWspdG~~------------LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 314 P-RPLFVIHN-LFNKSIVDMSWSPDGFS------------LFACSLDGTVALIHFE 355 (942)
T ss_pred C-Cchhhhhh-hhcCceeeeeEcCCCCe------------EEEEecCCeEEEEEcc
Confidence 5 44443332 23467999999997654 4555668888877764
No 103
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.72 E-value=3.4e-15 Score=150.20 Aligned_cols=191 Identities=13% Similarity=0.107 Sum_probs=143.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
++.+++++.|+.|++||+.+++.+..+.. +. .+..++|+++++.+++++..++.|++||..+.+. ...+..+.. +.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~-~~ 76 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGPD-PE 76 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCCC-cc
Confidence 45788999999999999999998888875 33 3567999999985557778899999999987763 334444433 57
Q ss_pred EEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCCCCceEEEee
Q 008356 86 GISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 86 slafsPdg~~LaSg-s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt~~~~v~~l~~ 163 (568)
.++|+|+++.++++ ..|+.|++||+++.+.+..+.....+.+++|+|++.+++++..++ .+.+||.++... ...+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~- 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL- 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-
Confidence 78999999877654 568999999999988777776666678999999999999988765 577789887632 22221
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~ 215 (568)
....+..++|++++++++ +++..++.|++||+.......
T Consensus 155 --~~~~~~~~~~s~dg~~l~-----------~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 155 --VDQRPRFAEFTADGKELW-----------VSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred --cCCCccEEEECCCCCEEE-----------EEcCCCCEEEEEEcCcceeee
Confidence 233457789999766543 333457889999998765433
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.71 E-value=1.9e-16 Score=157.89 Aligned_cols=193 Identities=16% Similarity=0.222 Sum_probs=152.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCc----------eeEEe----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 5 KDEHLASISLSGDLILHNLASGA----------KAAEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~----------~v~~l----~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
.|+++++|+.||.|.|||+++-. .++.+ ...|+-.|..+.|-|-..-+|.+++.|.+++|||..+.
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 57899999999999999997532 12212 22366778999999987778999999999999999887
Q ss_pred CceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCe
Q 008356 71 SPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGR 145 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~ 145 (568)
+ .......++.|++-+|+| ...+|++|..|-+|++.|+..|...+.+ +|.+.|.++.|+|.. .+|++|+.||.
T Consensus 135 Q--~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 135 Q--EAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA 212 (397)
T ss_pred e--eeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence 6 334455677899999998 4667888889999999999999998888 799999999999964 56788999999
Q ss_pred EEEEECCCCCCceEEEe------------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 146 VVFYDIRGKPQPLTVLR------------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~------------~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
|++||+|...-++.++. ...|.+.|..++|..++.+++.+ +.|..+++|+....
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~------------gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC------------GTDDRIRVWNMESG 278 (397)
T ss_pred EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc------------cCccceEEeecccC
Confidence 99999986432333332 23577889999998876665555 56999999986543
No 105
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.5e-17 Score=167.30 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=157.1
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
.|+.|.+.||+|+.||.|+||.+.+|++++.|...|...|+|+.|+.|+. .+++++.|.+++|.-+..++. +..+++|
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~-LKEfrGH 347 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKC-LKEFRGH 347 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchh-HHHhcCc
Confidence 48899999999999999999999999999999977888999999999998 588999999999999998884 6789999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee----------------------------------------
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------------------------------------- 120 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------------------------------------- 120 (568)
...|+...|.++|.+|++++.||+|++|+..+.+++.++.
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 9999999999999999999999999999987765543321
Q ss_pred --------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCe
Q 008356 121 --------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAET 192 (568)
Q Consensus 121 --------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~ 192 (568)
..+.+.+++++|.|.++++.++|+.++.|....+. ....+. .|...|..++-+|..+.
T Consensus 428 rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~-LE~tl~--VhEkdvIGl~HHPHqNl----------- 493 (508)
T KOG0275|consen 428 RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK-LERTLP--VHEKDVIGLTHHPHQNL----------- 493 (508)
T ss_pred eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc-eeeeee--cccccccccccCcccch-----------
Confidence 12334566778888888888888888888887763 334444 57777888888885444
Q ss_pred EEEEecCCCcEEcCC
Q 008356 193 ALLGGAVGDSILMPD 207 (568)
Q Consensus 193 ~Lls~s~Dg~V~VWD 207 (568)
+++-+.|+.+++|.
T Consensus 494 -lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 -LASYSEDGLLKLWK 507 (508)
T ss_pred -hhhhcccchhhhcC
Confidence 44446799999995
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.71 E-value=7.2e-16 Score=152.19 Aligned_cols=148 Identities=15% Similarity=0.211 Sum_probs=126.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCC------C
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGR------S 71 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-----DGtV~VWDl~t~------~ 71 (568)
+.+.++|++|+.|.+++|||+++|+.+..++ ....|..+.|+.+|. +++...+ .+.|.++|++.. +
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 3456789999999999999999999999988 567889999999997 4544443 367999999632 2
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
.+...+..+...++.+.|.|-+++|++|..||.|.+||+++++.+... .|...|+.+.+++|..++++++.|.+-++|
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 236667778899999999999999999999999999999998655443 588899999999999999999999999999
Q ss_pred ECCC
Q 008356 150 DIRG 153 (568)
Q Consensus 150 Dlrt 153 (568)
|.++
T Consensus 218 D~~t 221 (327)
T KOG0643|consen 218 DVRT 221 (327)
T ss_pred eccc
Confidence 9985
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.71 E-value=1.5e-16 Score=159.57 Aligned_cols=165 Identities=16% Similarity=0.251 Sum_probs=139.4
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-----------------CCceeEEeccCCCCeEEEEEcCCCCEEE
Q 008356 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-----------------RSPKVSWLKQHSAPTAGISFSSDDKIIA 97 (568)
Q Consensus 35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-----------------~~~~v~~l~~H~~~VtslafsPdg~~La 97 (568)
.|+.++++.+|++||. ++++|+.|..|+|.|+.. ..+.++.+..|.++|+++.|+|....|+
T Consensus 110 ~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred ecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 4888999999999998 999999999999999851 1145788999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCc---eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 008356 98 SVGLDKKLYTYDPGSRR---PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC 174 (568)
Q Consensus 98 Sgs~DGtV~IWDlrt~~---~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLa 174 (568)
+++.|++|++||+.... ....+....++.++.|+|.|.+|++|.....+++||+++.++-+.......|.+.|+++.
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE
Confidence 99999999999998643 334556778999999999999999999999999999998754444334447999999999
Q ss_pred EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+++.+ .++++++.||.|++||=-...
T Consensus 269 Ys~t~------------~lYvTaSkDG~IklwDGVS~r 294 (430)
T KOG0640|consen 269 YSSTG------------SLYVTASKDGAIKLWDGVSNR 294 (430)
T ss_pred ecCCc------------cEEEEeccCCcEEeeccccHH
Confidence 99854 466777889999999954433
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=164.17 Aligned_cols=189 Identities=17% Similarity=0.270 Sum_probs=148.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---------
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------- 72 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--------- 72 (568)
|.++++++++++.|+.+++|++...+...++.+ |.+.|+++.|..... .+++|+.|.+|++||+....+
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG-HtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG-HTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcc-cccceeeehhhcccc-ceeeccccchhhhhhhhhhheecccccccc
Confidence 678899999999999999999999999999998 777888888876544 367777777777777643221
Q ss_pred -----------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---
Q 008356 73 -----------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--- 120 (568)
Q Consensus 73 -----------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--- 120 (568)
.......+ +.|+++..++++..|++++.|.++.++|+++.+....+.
T Consensus 305 cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g 383 (459)
T KOG0288|consen 305 CNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG 383 (459)
T ss_pred ccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc
Confidence 01122222 368999999999999999999999999999988877763
Q ss_pred --cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356 121 --YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (568)
Q Consensus 121 --h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s 198 (568)
.....+.+.|+|++.|+++|+.||.|+||++.+.+ +.+.+........|++++|+|.|.+++.+ +
T Consensus 384 ~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsa------------d 450 (459)
T KOG0288|consen 384 FKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSA------------D 450 (459)
T ss_pred cccccccceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcc------------c
Confidence 34458899999999999999999999999999884 55666543333379999999977665554 5
Q ss_pred CCCcEEcC
Q 008356 199 VGDSILMP 206 (568)
Q Consensus 199 ~Dg~V~VW 206 (568)
.++.+.+|
T Consensus 451 k~~~v~lW 458 (459)
T KOG0288|consen 451 KQKAVTLW 458 (459)
T ss_pred CCcceEec
Confidence 58888888
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=1.6e-16 Score=172.41 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=158.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
.+|+|++||+|...|.|+||++..-+....+.. |+..|.|+.|+.. +..+|++++.|..|+|||+..+..++..+.+
T Consensus 467 vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA-HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~ 545 (1080)
T KOG1408|consen 467 VSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA-HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDG 545 (1080)
T ss_pred ECCCcceecccCccCceEEEEehhhhhhhheec-ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcc
Confidence 589999999999999999999988888888886 7788899999853 3458999999999999998544433444444
Q ss_pred CCCC-------------------------------------------------eEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 008356 80 HSAP-------------------------------------------------TAGISFSSDDKIIASVGLDKKLYTYDP 110 (568)
Q Consensus 80 H~~~-------------------------------------------------VtslafsPdg~~LaSgs~DGtV~IWDl 110 (568)
|... +++++..|..+++++++.|+.|+|||+
T Consensus 546 HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 546 HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEec
Confidence 4433 455666677788899999999999999
Q ss_pred CCCceeeEee----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 111 GSRRPSSCIT----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 111 rt~~~v~~~~----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
+.++.++.|+ |++....+...|.|.||++.+.|.++.+||.-.+++. -+.++|...|+.+.|.+|.+
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv---A~m~GHsE~VTG~kF~nDCk------ 696 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV---AQMTGHSEAVTGVKFLNDCK------ 696 (1080)
T ss_pred cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh---hhhcCcchheeeeeecccch------
Confidence 9999999883 6678889999999999999999999999999998543 23348999999999999644
Q ss_pred cCCCCeEEEEecCCCcEEcCCCC
Q 008356 187 TCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.|++.+.|++|.||.+.
T Consensus 697 ------HlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 697 ------HLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ------hheeecCCceEEEEECc
Confidence 45555679999999874
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.69 E-value=4.1e-17 Score=168.59 Aligned_cols=207 Identities=14% Similarity=0.181 Sum_probs=163.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
|-++...|++|+.|..|++|++...+ .+..+.+ ..+.|+.++|.+++. .+++++.|+.+++|+++... ...++.+
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~-~~iAas~d~~~r~Wnvd~~r-~~~TLsG 259 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNK-HVIAASNDKNLRLWNVDSLR-LRHTLSG 259 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCc-eEEeecCCCceeeeeccchh-hhhhhcc
Confidence 34556789999999999999987655 4555655 556789999999998 57788999999999998877 4778999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
|.+.|+++.|......+++|+.|.+|++||+....+...+-....+..|+.. ...+++|+.|++|++||.+.... ..
T Consensus 260 HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~-~~ 336 (459)
T KOG0288|consen 260 HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK-TR 336 (459)
T ss_pred cccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCce-ee
Confidence 9999999999986666999999999999999998888887667777777776 56889999999999999998743 22
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEec----------------------------------cCCCCeEEEEecCCCcEEc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDET----------------------------------TCKAETALLGGAVGDSILM 205 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s----------------------------------~ssd~~~Lls~s~Dg~V~V 205 (568)
.+. -.+.|+++..+++|..+.+++ -++++.++++|+.||.|+|
T Consensus 337 sv~---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 337 SVP---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred Eee---cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE
Confidence 222 335788888877776655332 1346667888888999999
Q ss_pred CCCCCCCccccc
Q 008356 206 PDPLPSVTTSSV 217 (568)
Q Consensus 206 WDlr~~~~~~s~ 217 (568)
|++........+
T Consensus 414 W~v~tgKlE~~l 425 (459)
T KOG0288|consen 414 WSVFTGKLEKVL 425 (459)
T ss_pred EEccCceEEEEe
Confidence 988765554433
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=169.78 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=158.4
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~ 82 (568)
..+.++|++|+.+++|.+|....++.-..+.. ..-.+++++|+.+|. +++.|++|-.|++-++.... ....+++|.+
T Consensus 63 a~~s~~f~~~s~~~tv~~y~fps~~~~~iL~R-ftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a 139 (933)
T KOG1274|consen 63 ACYSNHFLTGSEQNTVLRYKFPSGEEDTILAR-FTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA 139 (933)
T ss_pred eecccceEEeeccceEEEeeCCCCCccceeee-eeccceEEEEecCCc-EEEeecCceeEEEEeccccc-hheeecccCC
Confidence 45677999999999999999887765433332 446789999999998 89999999999999997766 3778999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
+|.++.|+|++++|++.+.||.|++||+.++.+...+. ....+..++|+|++..|++...|+.|++|+..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99999999999999999999999999999987765552 134577899999998999999999999999988
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
..... .++...+...+..+.|+|+|+||+++ ..|+.|.|||+..
T Consensus 220 we~~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs------------~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 WELQF-KLRDKLSSSKFSDLQWSPNGKYIAAS------------TLDGQILVWNVDT 263 (933)
T ss_pred ceehe-eecccccccceEEEEEcCCCcEEeee------------ccCCcEEEEeccc
Confidence 75433 34433344559999999998887766 5699999999873
No 112
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=4.7e-16 Score=167.02 Aligned_cols=200 Identities=16% Similarity=0.242 Sum_probs=153.1
Q ss_pred ccCCCCEEEE--EECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---
Q 008356 2 YNCKDEHLAS--ISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--- 71 (568)
Q Consensus 2 fSpdG~~Las--Gs~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--- 71 (568)
|+++.+++|+ .+..|.|.||++..... +..+. +...|+++.|+|...+.|+.+++||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 5666777765 45679999999975332 22233 456789999999888899999999999999995432
Q ss_pred ---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356 72 ---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRV 146 (568)
Q Consensus 72 ---~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V 146 (568)
.....+..|...|+.+.|+| -.+.|++++.|.+|++||+++.+....+ +|.+.|..++|+|+|+.+++.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 22567889999999999999 7789999999999999999998766555 899999999999999999999999999
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+||+.+..++++..-.... ...-..|.|.-+|+++++.+. .-...+.|.+||.....
T Consensus 745 rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gf--------dk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 745 RVYEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGF--------DKSSERQVQMYDAQTLD 801 (1012)
T ss_pred EEeCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEecc--------cccchhhhhhhhhhhcc
Confidence 9999999887665543221 133345778878777655421 11225667777765443
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.68 E-value=9e-16 Score=153.66 Aligned_cols=167 Identities=21% Similarity=0.305 Sum_probs=135.9
Q ss_pred eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 008356 28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLY 106 (568)
Q Consensus 28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~ 106 (568)
...++....++.|.+|+|+|....+++++++||+||+|+++.. ...-+....|.++|.+++|+.||..+++|+.|+.++
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 3445666678899999999976668889999999999999763 333355677999999999999999999999999999
Q ss_pred EEECCCCceeeEeecCCCeEEEEEecCCC--EEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356 107 TYDPGSRRPSSCITYEAPFSSLAFIDDDW--ILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 107 IWDlrt~~~v~~~~h~~~ItsLafsPdg~--~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las 184 (568)
+||+.+++...+-.|.++|.++.|-+... +|++|+.|.+|++||+|.. .++..+. -.+.++++..-.
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-~pv~t~~---LPeRvYa~Dv~~------- 166 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-NPVATLQ---LPERVYAADVLY------- 166 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC-Ceeeeee---ccceeeehhccC-------
Confidence 99999998887778999999999998665 8999999999999999976 4555554 446677665432
Q ss_pred eccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 185 ETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.+++.+..++.|.+|+++...
T Consensus 167 -------pm~vVata~r~i~vynL~n~~ 187 (347)
T KOG0647|consen 167 -------PMAVVATAERHIAVYNLENPP 187 (347)
T ss_pred -------ceeEEEecCCcEEEEEcCCCc
Confidence 244455559999999996543
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=7.4e-16 Score=154.81 Aligned_cols=195 Identities=17% Similarity=0.270 Sum_probs=162.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|-..|+.+++++.|.+..+||++++..+..+.+ |+...+.++-+|..+ ++++.+.|.+.++||++..-..+..+.+|.
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-Hd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTG-HDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccC-cchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccc
Confidence 344688999999999999999999999999998 555566667788776 899999999999999997766688999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|+++.|.- +..+++|+.|.+|++||+++. .++..+....+++.++.+..+.+++.-..+..|++||+..... ..+
T Consensus 358 dtVTS~vF~~-dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl-aRl 435 (481)
T KOG0300|consen 358 DTVTSVVFNT-DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL-ARL 435 (481)
T ss_pred cceeEEEEec-CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcc-ccC
Confidence 9999999995 456899999999999999985 4778888999999999999889999999999999999987532 111
Q ss_pred E--eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 161 L--RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 161 l--~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
- ...+|..-|+|++|..+... .-|++++-|+.+.-|.+..
T Consensus 436 PrtsRqgHrRMV~c~AW~eehp~----------cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 436 PRTSRQGHRRMVTCCAWLEEHPA----------CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CcccccccceeeeeeeccccCcc----------cccccccccceeeeeEecc
Confidence 1 22378899999999875322 2367777899999998753
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=4.9e-15 Score=143.26 Aligned_cols=192 Identities=16% Similarity=0.251 Sum_probs=147.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--Cce---eEEeeCCCCCcEEEEEEcc----------------------------
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS--GAK---AAELKDPNEQVLRVLDYSR---------------------------- 47 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t--g~~---v~~l~~~h~~~Vs~Lafsp---------------------------- 47 (568)
+|+|+|++|++|+.|.+|++...+. .+. -.++.- |++.|++++|-.
T Consensus 96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm-hdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM-HDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EecCccCeEEecCCCceEEEEecccccccccCcceeeee-cCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 5999999999999999999875532 211 112221 444555555432
Q ss_pred ------------------CCCeEEEEEeCCCeEEEEECCCCCceeEEecc--C-----CCCeEEEEEcCCCCEEEEEeCC
Q 008356 48 ------------------NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--H-----SAPTAGISFSSDDKIIASVGLD 102 (568)
Q Consensus 48 ------------------dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~--H-----~~~VtslafsPdg~~LaSgs~D 102 (568)
++- +|++|++|.+|++||++-+.+ +..+.. | ...|.+++..|.|++|++|-.|
T Consensus 175 ~~~a~sghtghilalyswn~~-m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSWNGA-MFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEEEecCc-EEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 222 578899999999999976653 333221 2 2569999999999999999999
Q ss_pred CeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC---CCceEEEeecCCCCCeeEEEEccC
Q 008356 103 KKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK---PQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 103 GtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~---~~~v~~l~~~~h~~~VtsLafspd 178 (568)
....+||++.+++++.+ .|...|+|+.|+|...++++++.|..|++-|++.. +.++.++. .|...+..+.|+|.
T Consensus 253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQ 330 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCc
Confidence 99999999999999888 79999999999999999999999999999999863 22333333 68888889999994
Q ss_pred CCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 179 KPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 179 g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+.-+++.+.|+++.+|-+.
T Consensus 331 ------------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 ------------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ------------cceeeeccCcceEEEeccC
Confidence 4456677779999999653
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4e-17 Score=177.81 Aligned_cols=178 Identities=20% Similarity=0.316 Sum_probs=155.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|+++..+|++|..+|+|++||++.++.++.+.+ |...+..+.|+|.+. +++.|+.|+.+++||++...+ .....+|.
T Consensus 78 f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc-~~~~~s~~ 154 (825)
T KOG0267|consen 78 FDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGC-SHTYKSHT 154 (825)
T ss_pred cCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceeeeccceE-EeccccccccceehhhhccCc-eeeecCCc
Confidence 667778899999999999999999999999998 555556689999998 789999999999999986554 67788899
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
..|.++.|.|+|++++++++|.+++|||+..|+....|. |.+.+..+.|+|..-.++.|+.|+.|++||+++.. .+..
T Consensus 155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe-~I~s 233 (825)
T KOG0267|consen 155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE-VISS 233 (825)
T ss_pred ceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeE-Eeec
Confidence 999999999999999999999999999999999999985 99999999999999999999999999999999762 1111
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEe
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
.. .....|.++.|+++++.+.++
T Consensus 234 ~~--~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 234 GK--PETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred cC--CccCCceeeeecCCceeeecC
Confidence 11 345789999999999888776
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.8e-15 Score=157.76 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=150.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
.+.||+|+.|.+|++||+.++++...+. +|.+.|.+++|++....+|++|+.|++|.++|++.....-..+ ...+.|-
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VE 333 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVE 333 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceE
Confidence 3578999999999999999999998888 5889999999999998899999999999999998533222222 2456799
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 86 GISFSS-DDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 86 slafsP-dg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
.++|+| ....++++..||+|+.+|+|.. +++..+ .|.++|.+++++.. ..+|++++.|+.|++|++..... ..+.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~ 412 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVK 412 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccc
Confidence 999999 6677888899999999999985 777777 69999999999985 56888999999999999986532 1111
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
...-.-+...|+++.|+- ...|+.++..+.++|||+....+.
T Consensus 413 ~~~~~~~rl~c~~~~~~~-----------a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 413 EHSFKLGRLHCFALDPDV-----------AFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccceeecccCCCc-----------ceEEEecCccceEEEeecccChhH
Confidence 100112335666666653 234445555678999998765543
No 118
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.67 E-value=1.2e-16 Score=156.38 Aligned_cols=193 Identities=18% Similarity=0.247 Sum_probs=163.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~ 83 (568)
.+..+-|++..|=+-+|||.-+|..+..+. |+..|..++|+.|.. .|++|+.+..++|||++..+.+...+.+|.+.
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 344456778888889999999999999988 788999999999987 79999999999999998887777889999999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
|..+.|....+.|++...|++||+||.+++..++.+.....++++.++++|++|.++. .+.|.+||..... +++.+
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~-~lKs~-- 221 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG-LLKSY-- 221 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecccccc-ceeec--
Confidence 9999999988999999999999999999999999999999999999999999887765 4779999999873 33333
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
.-...|.+..++|+. ..+++++.|..++.||.........
T Consensus 222 -k~P~nV~SASL~P~k------------~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 222 -KMPCNVESASLHPKK------------EFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred -cCccccccccccCCC------------ceEEecCcceEEEEEeccCCceeee
Confidence 345678899999954 4556667799999999876554443
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.67 E-value=1.1e-15 Score=159.85 Aligned_cols=199 Identities=15% Similarity=0.261 Sum_probs=165.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeE-Eee----------------CCCCCcEEEEEEccCCCeEEEEEeCCCeEE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAA-ELK----------------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLH 63 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~-~l~----------------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~ 63 (568)
+++++++++++++.+|+|.=|++.+++... .+. ..|...+.+++.++|++ +|++|+.|..|.
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~ 227 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQ 227 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-EEEecCCCceEE
Confidence 367899999999999999999998887431 111 03556678899999998 899999999999
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc
Q 008356 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~ 142 (568)
|||.++.+. +..+.+|.+.|.+++|-.....+++++.|+.|++|++.....+.++ +|...|..|....-++.+.+|+.
T Consensus 228 Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 228 IWDCDTLEH-VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred EecCcccch-hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccc
Confidence 999999884 7778999999999999988889999999999999999887666544 89999999998888889999999
Q ss_pred CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccc
Q 008356 143 NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVS 218 (568)
Q Consensus 143 DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~ 218 (568)
|+++++|++....+ .++. +|.+.+-|++|-. +..+++|+.+|.|.+|++....+.....
T Consensus 307 DrT~rlwKi~eesq--lifr--g~~~sidcv~~In-------------~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 307 DRTVRLWKIPEESQ--LIFR--GGEGSIDCVAFIN-------------DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred cceeEEEeccccce--eeee--CCCCCeeeEEEec-------------ccceeeccCCceEEEeeecccCceeEee
Confidence 99999999955432 3344 7888999999864 3567888999999999998766654443
No 120
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.2e-16 Score=179.52 Aligned_cols=197 Identities=20% Similarity=0.300 Sum_probs=155.1
Q ss_pred ccCCCCE----EEEEECCCcEEEEECCC---Cc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC
Q 008356 2 YNCKDEH----LASISLSGDLILHNLAS---GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS 71 (568)
Q Consensus 2 fSpdG~~----LasGs~DG~V~VWDl~t---g~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~ 71 (568)
|.+.|.. ||.|..||.|.+||... +. .+..+.. |.+.|..++|++...++|++|+.||.|.|||+...+
T Consensus 72 W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 72 WGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE 150 (1049)
T ss_pred ecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCcEEEeccCCcC
Confidence 5555544 88888999999999864 22 2334444 778889999999998899999999999999997755
Q ss_pred ceeEE-eccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecC---CCeEEEEEecCC-CEEEEEEcCC-
Q 008356 72 PKVSW-LKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE---APFSSLAFIDDD-WILTAGTSNG- 144 (568)
Q Consensus 72 ~~v~~-l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---~~ItsLafsPdg-~~LasGs~DG- 144 (568)
..... -....+.|.++.|+. ....|++++.+|++.|||+|..+++..+... ..+..++|+|+. ..|++++.|.
T Consensus 151 tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 151 TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 33322 222467899999998 6677899999999999999998877666432 348899999975 4566665543
Q ss_pred --eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 145 --RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 145 --~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.|.+||+|....+++++. +|...|.++.|++. |..++++++.|+.|.+|+.....
T Consensus 231 ~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~-----------D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 231 APVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQ-----------DPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred CceeEeecccccCCchhhhc--ccccceeeeccCCC-----------CchhhhcccCCCCeeEecCCCce
Confidence 499999999888888886 89999999999985 55677778889999999987644
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=3.7e-14 Score=142.69 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=141.6
Q ss_pred CccCCCCEEEEE-ECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEec
Q 008356 1 MYNCKDEHLASI-SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSpdG~~LasG-s~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~ 78 (568)
+|+|+++.++++ ..++.|++||+.+++.+..+.. ...+.+++|+|++. +++++..++ .+++||..+... .....
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~-~~~~~ 154 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI-VDNVL 154 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE-EEEEE
Confidence 378999877655 4689999999998887777763 23357799999998 677776654 577889877653 22222
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeEeecC------C--CeEEEEEecCCCEEEEE-EcCCeEEE
Q 008356 79 QHSAPTAGISFSSDDKIIASV-GLDKKLYTYDPGSRRPSSCITYE------A--PFSSLAFIDDDWILTAG-TSNGRVVF 148 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSg-s~DGtV~IWDlrt~~~v~~~~h~------~--~ItsLafsPdg~~LasG-s~DG~V~V 148 (568)
....+.+++|++++++|+.+ ..++.|++||+++++.+..+... . ....++|+|++++++++ ..++.|.+
T Consensus 155 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 155 -VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred -cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 23456789999999988554 46999999999998876655311 1 23468899999986554 45678999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
||+++.+ ....+ .+...+.+++|+|+|++|+++ ...++.|++||++......+...
T Consensus 234 ~d~~~~~-~~~~~---~~~~~~~~~~~~~~g~~l~~~-----------~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 234 VDAKTYE-VLDYL---LVGQRVWQLAFTPDEKYLLTT-----------NGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred EECCCCc-EEEEE---EeCCCcceEEECCCCCEEEEE-----------cCCCCeEEEEECCCCcEEEEEEc
Confidence 9998763 22322 234578999999987655433 24588999999998776555543
No 122
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.7e-14 Score=145.46 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=139.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEec--
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLK-- 78 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~-- 78 (568)
.+|-++.+++++.|++|++||++..++...+.... .. .++|.|+|- ++|++.....|++||++.- +.+...+.
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~p--i~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~ 183 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RP--IAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSIT 183 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-Cc--ceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccC
Confidence 46888999999999999999999888777666422 22 368999997 7888887779999999643 22233332
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cC--C-CeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 79 -QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YE--A-PFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 79 -~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~--~-~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
....+.+.|.|+|||++|+.+...+.+++.|--+|..+..+. +. . ---..+|.||++++++|..||+|++|++++
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 346779999999999999999999999999999998877773 22 1 125788999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+. .+..++. .+.+++.++.|+|.-..++++
T Consensus 264 g~-~v~~~~~-~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 264 GK-KVAVLRG-PNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred Cc-EeeEecC-CCCCCccccccCCceeeeeec
Confidence 85 3444442 278899999999965444444
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.7e-15 Score=148.78 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=149.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce--eEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---ce-
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAK--AAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS---PK- 73 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~---~~- 73 (568)
+|+.||++|++++.|+.|+||++.+-.. -+.++.. ..+.-+.+.|.||.+.+++..-...++++|.+...+ ..
T Consensus 93 ~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~ 172 (420)
T KOG2096|consen 93 AFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH 172 (420)
T ss_pred EEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence 5899999999999999999999875321 1111110 112345689999998788888888899999874321 11
Q ss_pred -------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 74 -------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 74 -------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
...-+.|...|..+-...++.+|++++.|.+|.+||++ |+.+..+ .....-...+.+|+|++|++++..-.
T Consensus 173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD 251 (420)
T KOG2096|consen 173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD 251 (420)
T ss_pred ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence 22344577778888888889999999999999999999 7777777 44556778899999999999999999
Q ss_pred EEEEECCC-----CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 146 VVFYDIRG-----KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 146 V~VWDlrt-----~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|+||.+-- .+...+.+...+|...|..++|+++ ...+++.+.||++++||..
T Consensus 252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------------cceeEEEecCCcEEEeecc
Confidence 99998742 1223445555699999999999995 4566777889999999975
No 124
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=1.1e-14 Score=150.20 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=156.2
Q ss_pred CccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356 1 MYNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (568)
Q Consensus 1 afSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~ 72 (568)
+|+| +++.||+|+.|.+|.||++-.+. .+..+.+ |...|..++|+|...++|++++.|.+|.+||+.+++.
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea 166 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA 166 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEEeccCCce
Confidence 3676 45789999999999999986543 3566776 7778888999999999999999999999999999985
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCC-CeEEEEEecCCCEEEEEE---cCCeEE
Q 008356 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEA-PFSSLAFIDDDWILTAGT---SNGRVV 147 (568)
Q Consensus 73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~-~ItsLafsPdg~~LasGs---~DG~V~ 147 (568)
.+. +. |.+.|+++.|+.||.+|++.+.|++|+|||.++++.+..- .|.+ .-..+.|-.++.++.+|. .+..+-
T Consensus 167 li~-l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 167 LIT-LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred eee-cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecccccccccee
Confidence 443 44 9999999999999999999999999999999999988776 5544 455677888888666664 377899
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
|||..+-..++.... ......|.---|+++ ...++++|-.|+.|+.|++.+-.+
T Consensus 245 Lwdp~nl~eP~~~~e-lDtSnGvl~PFyD~d-----------t~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQE-LDTSNGVLLPFYDPD-----------TSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccCcccccCcceeEE-eccCCceEEeeecCC-----------CCEEEEEecCCcceEEEEecCCCc
Confidence 999998776644433 234444554455554 455667777799999999876554
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=7.8e-15 Score=147.36 Aligned_cols=161 Identities=21% Similarity=0.309 Sum_probs=130.9
Q ss_pred EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 008356 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP 110 (568)
Q Consensus 31 ~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDl 110 (568)
++..+..+.|..|.|++.+. .|+++++||++++||+.... ......|..++.+++|.+ ...+++|+.||+|+.+|+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred ccCCCChhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccC-CceEEEeccCceEEEEEe
Confidence 45555578899999998877 57777899999999998875 455667999999999995 778999999999999999
Q ss_pred CCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 111 GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 111 rt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
.+++....-.|..+|.|+.+.+....+++|+.|++|++||.|... ....+ .....|.++...-
T Consensus 83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~---d~~kkVy~~~v~g------------- 145 (323)
T KOG1036|consen 83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF---DQGKKVYCMDVSG------------- 145 (323)
T ss_pred cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc---ccCceEEEEeccC-------------
Confidence 999988888999999999999988999999999999999999742 22222 2345677776432
Q ss_pred CeEEEEecCCCcEEcCCCCCCCc
Q 008356 191 ETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
..|+.++.|+.|.+||+|....
T Consensus 146 -~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 146 -NRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -CEEEEeecCceEEEEEcccccc
Confidence 3455555699999999997664
No 126
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.9e-15 Score=147.23 Aligned_cols=202 Identities=17% Similarity=0.220 Sum_probs=143.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe----
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL---- 77 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l---- 77 (568)
||+.|.+||+|+.||.|.|||+.+....+.+.+ |-.+|.+++|+++|+ .|++++.|..|.+||+..+.+..+..
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs~l~rirf~sp 108 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGSPLKRIRFDSP 108 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCC-EeeeecCCceeEEEeccCCCceeEEEccCc
Confidence 899999999999999999999998886666665 778899999999998 89999999999999997665321110
Q ss_pred ----ccCCC---------------------C----------------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356 78 ----KQHSA---------------------P----------------TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (568)
Q Consensus 78 ----~~H~~---------------------~----------------VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v 116 (568)
.-|.. + ..+..|.+.|++|++|...|.+.+||..+.+++
T Consensus 109 v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v 188 (405)
T KOG1273|consen 109 VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV 188 (405)
T ss_pred cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee
Confidence 00100 0 112236667899999999999999999999888
Q ss_pred eEee--cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC--------ceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 117 SCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ--------PLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 117 ~~~~--h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~--------~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
..+. ....|..+.++..|++|+.-+.|+.|+.|+++.-.. +...+...-....-.+++|+.+|.|++.++
T Consensus 189 as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 189 ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 7774 346899999999999999999999999999873110 111111111122335677888888877764
Q ss_pred cCCCCeEEEEecCCCcEEc
Q 008356 187 TCKAETALLGGAVGDSILM 205 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~V 205 (568)
......+++-.+....|++
T Consensus 269 ~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred ccceeEEEEecCCcceeee
Confidence 3333333333333334443
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.3e-15 Score=144.09 Aligned_cols=188 Identities=15% Similarity=0.206 Sum_probs=146.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCce--eEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCC--CceeEEecc
Q 008356 5 KDEHLASISLSGDLILHNLASGAK--AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGR--SPKVSWLKQ 79 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~--v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~--~~~v~~l~~ 79 (568)
-|++||+++.||+|.||.-++++- ..+... |...|++++|.|.+- .+|++++.||.|.|.+.+.. -...+....
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 588999999999999999877752 334444 788899999998752 36889999999999998654 222445678
Q ss_pred CCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEECCCCcee--eEe-ecCCCeEEEEEecC----CCEEE
Q 008356 80 HSAPTAGISFSSD---D-----------KIIASVGLDKKLYTYDPGSRRPS--SCI-TYEAPFSSLAFIDD----DWILT 138 (568)
Q Consensus 80 H~~~VtslafsPd---g-----------~~LaSgs~DGtV~IWDlrt~~~v--~~~-~h~~~ItsLafsPd----g~~La 138 (568)
|.-.|+++.|.|. | +.|++|+.|..|+||+...++-+ ..+ .|.+.++.++|.|. ..+||
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999999984 4 67999999999999999886422 223 69999999999995 36899
Q ss_pred EEEcCCeEEEEECCCCCCce--EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 139 AGTSNGRVVFYDIRGKPQPL--TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~~~~v--~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
+++.||+|.||..+....+. +.+. .....+..+.|+..|..|+.. +.|+.|.+|.
T Consensus 228 S~SqDg~viIwt~~~e~e~wk~tll~--~f~~~~w~vSWS~sGn~LaVs------------~GdNkvtlwk 284 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPWKKTLLE--EFPDVVWRVSWSLSGNILAVS------------GGDNKVTLWK 284 (299)
T ss_pred EecCCCcEEEEEecCccCcccccccc--cCCcceEEEEEeccccEEEEe------------cCCcEEEEEE
Confidence 99999999999887542322 3333 345789999999987776655 3377777774
No 128
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=147.72 Aligned_cols=195 Identities=17% Similarity=0.257 Sum_probs=153.9
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-CCeEEEEEeCCCeEEEEECCCCCce-eEEeccCC-CC
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHS-AP 83 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-g~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~H~-~~ 83 (568)
..+|++...|.|++||..+++.+.++++ +...++.++|..+ +.+.+.+|+.||+|++||++..... +.....|. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 4688899999999999999999999997 6667788888775 6678999999999999999866533 33445555 57
Q ss_pred eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eeEe--ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCC
Q 008356 84 TAGISFSSDDKIIASVG----LDKKLYTYDPGSRRP-SSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 84 VtslafsPdg~~LaSgs----~DGtV~IWDlrt~~~-v~~~--~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~ 155 (568)
..|++.+-.++.|++|. .|-.|.+||+|..+. +..+ .|...|++++|+| +.++|++|+.||.|.|||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 78888777788888875 466899999998765 5555 6999999999999 56899999999999999998764
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
..-..+....|...|.++.|..++ ...+++-+..+...+|++....+
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~-----------ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKK-----------YKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCC-----------cceEEEEEccCceeEEEccCCCh
Confidence 433344445688889999998753 22345555688899999876654
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=6e-14 Score=141.00 Aligned_cols=199 Identities=12% Similarity=0.214 Sum_probs=148.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC----ceeEEeeCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCC---
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG----AKAAELKDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRS--- 71 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg----~~v~~l~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~--- 71 (568)
.|.+.|+++|+|+.|++|+|||.... .+....+. |.+.|..|.|.+- |+ ++++++.|+++.||.-....
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~ 97 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEA 97 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccc-eEEEEecCCceeeeeeccccccc
Confidence 47888999999999999999996533 35566776 5666666888653 54 89999999999999863211
Q ss_pred -----ceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCc------eeeEee--------cCCCeEEEEE
Q 008356 72 -----PKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRR------PSSCIT--------YEAPFSSLAF 130 (568)
Q Consensus 72 -----~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~------~v~~~~--------h~~~ItsLaf 130 (568)
.....+......|++|.|.| -|-.+++++.||.||||+.-..- ....+. +..+..|+.|
T Consensus 98 ~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 98 HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 12345566778899999999 67889999999999999865422 222222 5677889999
Q ss_pred ecC---CCEEEEEEcC-----CeEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356 131 IDD---DWILTAGTSN-----GRVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (568)
Q Consensus 131 sPd---g~~LasGs~D-----G~V~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg 201 (568)
+|. ..+||+|+.+ +.++||...... +..++-...+|..+|+.++|.|+ ......+|+.++.||
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn--------~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN--------IGRSYHLLAVATKDG 249 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc--------cCCceeeEEEeecCc
Confidence 983 5788888876 478999876544 33333344589999999999996 233456677778899
Q ss_pred cEEcCCCCC
Q 008356 202 SILMPDPLP 210 (568)
Q Consensus 202 ~V~VWDlr~ 210 (568)
|+||.++.
T Consensus 250 -v~I~~v~~ 257 (361)
T KOG2445|consen 250 -VRIFKVKV 257 (361)
T ss_pred -EEEEEEee
Confidence 99999875
No 130
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.60 E-value=2.2e-14 Score=141.48 Aligned_cols=170 Identities=14% Similarity=0.206 Sum_probs=135.9
Q ss_pred EeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 008356 31 ELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTY 108 (568)
Q Consensus 31 ~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IW 108 (568)
++++ |...+..|+|+-+|. .|++|+.|+++.+|++..... .....++|.+.|-.++|+| +...+++++.|.+|++|
T Consensus 15 ~~~~-~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQG-HVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred Hhhh-hhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 3444 667789999999998 799999999999999965532 1334678999999999999 88899999999999999
Q ss_pred ECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC-----------------------------ceE
Q 008356 109 DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ-----------------------------PLT 159 (568)
Q Consensus 109 Dlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~-----------------------------~v~ 159 (568)
|++.++++..+...+.-.-+.|+|+|.+++++..|..|.+.|.++.+. .+.
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 999999999987777777799999999999999999999999985321 011
Q ss_pred EEe---------ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 160 VLR---------ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 160 ~l~---------~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
++. ...|.....||.|+|+|+|++++ +.|..+-+||+....+.
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~G------------sADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATG------------SADALVSLWDVDELICE 224 (313)
T ss_pred EEeccccccccccccCCcceEEEEECCCCceEeec------------cccceeeccChhHhhhh
Confidence 111 11466677788888877777666 55999999999876653
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.60 E-value=1.2e-14 Score=158.11 Aligned_cols=179 Identities=15% Similarity=0.211 Sum_probs=148.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
++.+|++|+.|..|.+|.+.+......+++ |+..|.++....++. +++|++|.++++|....- ...+.+|...|
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-H~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~l---~~~l~gH~asV 143 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-HKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGEL---VYSLQGHTASV 143 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhc-cccceeeeecCCcCc--eEecccccceEEecchhh---hcccCCcchhe
Confidence 455789999999999999999999999998 667778888776664 899999999999987543 34489999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA 163 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~ 163 (568)
+++...|++ .+++|+.|.+|++|.- ++.++++ +|.+.|+.+++-+++ .+++++.||.|++|++... .++..
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge----~l~~~ 215 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGE----VLLEM 215 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCc----eeeee
Confidence 999999977 8999999999999975 6667777 799999999999875 5678899999999999654 34555
Q ss_pred cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 164 CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 164 ~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
++|..-|+++....++. .+++++.|+++++|+..
T Consensus 216 ~ghtn~vYsis~~~~~~------------~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDG------------LIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eccceEEEEEEecCCCC------------eEEEecCCceEEEeecC
Confidence 69999999999655433 45555678888888765
No 132
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.60 E-value=1.2e-14 Score=145.11 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=151.2
Q ss_pred ccCCC-----CEEEEEECCCcEEEEECCC--Ccee--EEe----eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356 2 YNCKD-----EHLASISLSGDLILHNLAS--GAKA--AEL----KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (568)
Q Consensus 2 fSpdG-----~~LasGs~DG~V~VWDl~t--g~~v--~~l----~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~ 68 (568)
|.|+. ++||+.+ ..+++|.+.. .+.. ..+ ..++...++++.|+.-..+++.+.+-|-++.|||+.
T Consensus 104 wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie 181 (364)
T KOG0290|consen 104 WIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIE 181 (364)
T ss_pred ecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEe
Confidence 55654 3455543 4799999863 2211 111 223457889999999888899999999999999998
Q ss_pred CCCc--eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe---ec-CCCeEEEEEecC-CCEEEEE
Q 008356 69 GRSP--KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI---TY-EAPFSSLAFIDD-DWILTAG 140 (568)
Q Consensus 69 t~~~--~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h-~~~ItsLafsPd-g~~LasG 140 (568)
.+.. ....+..|..+|.+++|.. .-+.+++++.||.|++||+|..+.-.++ .. ..+...++|+++ -+++|+-
T Consensus 182 ~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 182 TGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhh
Confidence 7632 3567889999999999998 4568899999999999999987655554 22 557889999984 5677774
Q ss_pred E-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 141 T-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 141 s-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
. ....|.|.|+|....++..++ +|.+.|+.++|.|. ....+.+++.|..+.+||+....
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIaWaPh-----------S~~hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLR--NHQASVNGIAWAPH-----------SSSHICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred hcCCceEEEEEecCCCcceehhh--cCcccccceEecCC-----------CCceeeecCCcceEEEEeccccc
Confidence 4 456799999999988888777 89999999999996 34566677779999999986543
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.60 E-value=2.3e-14 Score=158.51 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=152.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEee--CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELK--DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~--~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
.++.|++.+.|...|+|-+||+..|.....+- ..|+..|+.++...-++ ++++++.+|.+++||...... ...++
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k~l-~~~l~- 532 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKKVL-KKSLR- 532 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCcce-eeeec-
Confidence 36778999999999999999999999888882 34888999999988877 899999999999999988762 33333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
-...+.++..+.....++.+..|-.|+++|..+.+.++.+ +|...|++++|+|||++|++++.|++|++||+-++. .+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lI 611 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LI 611 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-ee
Confidence 3456888888888888999999999999999999999888 699999999999999999999999999999999983 33
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
..+ .-..+.+++.|+|+|.+|++...
T Consensus 612 D~~---~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 612 DGL---LVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred eeE---ecCCcceeeEECCCCCEEEEEEe
Confidence 333 35678999999999999888744
No 134
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.60 E-value=1e-14 Score=150.25 Aligned_cols=168 Identities=13% Similarity=0.179 Sum_probs=139.3
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 008356 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYT 107 (568)
Q Consensus 35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~I 107 (568)
+|...|.+++|+|.+++.|++|++|.+|.||++..+. ..+..+.+|...|.-++|+| -.+.|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 4888899999999999999999999999999995432 34778999999999999999 6788999999999999
Q ss_pred EECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC-eeEEEEccCCCeEEEec
Q 008356 108 YDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA-VSSLCWQRAKPVFIDET 186 (568)
Q Consensus 108 WDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~-VtsLafspdg~~Las~s 186 (568)
||+.+++.+..+.|.+.|.++.|+.||.+|++.+.|..|+|||.+.+. ++..-. +|.+. -..+.|-.+|.++.++
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-~v~e~~--~heG~k~~Raifl~~g~i~tTG- 234 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-VVSEGV--AHEGAKPARAIFLASGKIFTTG- 234 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-Eeeecc--cccCCCcceeEEeccCceeeec-
Confidence 999999988888999999999999999999999999999999999984 333332 45442 3455677777744444
Q ss_pred cCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 187 TCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
++-..++++-+||......+
T Consensus 235 --------fsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 235 --------FSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred --------cccccccceeccCcccccCc
Confidence 22234899999999887754
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.9e-14 Score=146.59 Aligned_cols=192 Identities=16% Similarity=0.203 Sum_probs=153.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-eeEEe
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-KVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~v~~l 77 (568)
.|||....|++++.||.++||.+.. ...+..+.- ...+|.+.+|.|+|...+++++....++.||+.+.+. ++...
T Consensus 220 ~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~ 298 (514)
T KOG2055|consen 220 QFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP 298 (514)
T ss_pred EecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC
Confidence 3899999999999999999999842 223444432 4678999999999987899999999999999977652 23334
Q ss_pred ccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 78 KQHS-APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 78 ~~H~-~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
.++. ..+....+++++++|+..+..|.|.+....+++.+..+...+.|..++|+.+++.|++.+.+|.|.+||++....
T Consensus 299 ~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 299 YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 4444 346778899999999999999999999999999999999999999999999999999999999999999998843
Q ss_pred ceEEEeecCCCCCe--eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 157 PLTVLRACSSSEAV--SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 157 ~v~~l~~~~h~~~V--tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+..+. ..+.| +++|.++++.|++++ +..|.|.|||..
T Consensus 379 -~~rf~---D~G~v~gts~~~S~ng~ylA~G------------S~~GiVNIYd~~ 417 (514)
T KOG2055|consen 379 -LHRFV---DDGSVHGTSLCISLNGSYLATG------------SDSGIVNIYDGN 417 (514)
T ss_pred -EEEEe---ecCccceeeeeecCCCceEEec------------cCcceEEEeccc
Confidence 33332 33444 556666776665555 568999999964
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.59 E-value=2.2e-14 Score=145.19 Aligned_cols=189 Identities=19% Similarity=0.273 Sum_probs=144.6
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--EEeccCCCCe
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--SWLKQHSAPT 84 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~~l~~H~~~V 84 (568)
-+||+||.-|.|+|.|+.+++....+.+ |...|+.|++.|+..+++++++.|..|++|++++..+.. --..+|.+.|
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 4788899999999999999999999987 888999999999998899999999999999999887532 1245799999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------------------------eeEe----ec--------------
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRP-------------------------SSCI----TY-------------- 121 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~-------------------------v~~~----~h-------------- 121 (568)
.+++|++++.+|++++.|..|++|++...+. +..+ -|
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~i 264 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFI 264 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhhe
Confidence 9999999999999999999999999862110 0000 00
Q ss_pred -----CCC-----------------------------------eE--EEEEecCCCEEEEEEcCCeEEEEECCCCCCc-e
Q 008356 122 -----EAP-----------------------------------FS--SLAFIDDDWILTAGTSNGRVVFYDIRGKPQP-L 158 (568)
Q Consensus 122 -----~~~-----------------------------------It--sLafsPdg~~LasGs~DG~V~VWDlrt~~~~-v 158 (568)
+.. |. ..+|++.+++||.|.+.|.|.+||++..+.+ .
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 011 11 2234455788999999999999999986542 2
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
..+........|+..+|+.++..| +..+.|+.|.-||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~l------------v~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSIL------------VLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEE------------EEEeCCCcEEEEEe
Confidence 223322345678889998865544 44466999999985
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-14 Score=151.05 Aligned_cols=188 Identities=14% Similarity=0.202 Sum_probs=150.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCCCe
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPT 84 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~V 84 (568)
..++++||..+.|+|||+....+.+.+++ |...|+++.++-... +|++++..|.|.|..+.++.. ...+.. ....|
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkd-h~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsv 167 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKD-HQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSV 167 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccC-CcceeEEEEecCCcc-eeEEeccCCcEEEEecccCcc-ccceecCCCCeE
Confidence 46899999999999999986556666676 668999999998887 899999999999999987763 223332 24556
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 85 AGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 85 tslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
.-+.|++ ...+|.+++.+|.|.+||+....++..+ .|..++..|+|+| +..+|++.+.|.+|.+||.+... ....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-ccce
Confidence 7899999 4556788999999999999988887666 6999999999999 46788889999999999999763 3333
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+. ...+...++|.++|-+|+.+ ...|.|..||+|...
T Consensus 247 l~---y~~Plstvaf~~~G~~L~aG------------~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 247 LT---YSHPLSTVAFSECGTYLCAG------------NSKGELIAYDMRSTK 283 (673)
T ss_pred ee---ecCCcceeeecCCceEEEee------------cCCceEEEEecccCC
Confidence 43 45678999999977665555 558999999998644
No 138
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.58 E-value=1.7e-14 Score=150.92 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=151.3
Q ss_pred CccCCC--CEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e
Q 008356 1 MYNCKD--EHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K 73 (568)
Q Consensus 1 afSpdG--~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~ 73 (568)
+|+|.. +.+|+|...|.|-+||+.+.+ .+..+. .|...|.+|.|+|.+...+++.+.||+|++-|+.+... .
T Consensus 193 ~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~ 271 (498)
T KOG4328|consen 193 AFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE 271 (498)
T ss_pred EecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH
Confidence 477765 478889999999999995222 233344 47889999999999888899999999999999977642 1
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEE
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP-SSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYD 150 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~-v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWD 150 (568)
+..+......+..++|+.+...++.+..=|.+.+||++++.. ...+ -|+..|+.++++|. ..+|++++.|++++|||
T Consensus 272 v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 272 VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 222333445677888888778888888888999999998754 2222 47779999999994 67899999999999999
Q ss_pred CCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 151 IRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 151 lrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+|...... -++....|...|.++.|+|.+ +. |++.+.|..|+|||..
T Consensus 352 ~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----------gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 352 LRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----------GT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhhhcCCCCcceecccccceeeeeEEcCCC-----------Cc-eEeeccCCceEEeecc
Confidence 99742211 146666899999999999963 33 6777889999999974
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=2.8e-14 Score=142.58 Aligned_cols=166 Identities=18% Similarity=0.269 Sum_probs=138.0
Q ss_pred eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------ceeE------EeccCCCCeEEEEEcC-CCCEE
Q 008356 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------PKVS------WLKQHSAPTAGISFSS-DDKII 96 (568)
Q Consensus 32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------~~v~------~l~~H~~~VtslafsP-dg~~L 96 (568)
+...|.+.|+.+.+.+....++++|+.||.|.|||++... .+.. .-.+|.-.|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4456889999999998776799999999999999996432 0111 1235778899999999 88889
Q ss_pred EEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecC---CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEE
Q 008356 97 ASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD---DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSL 173 (568)
Q Consensus 97 aSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd---g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsL 173 (568)
.+++.|.++++||..+-+....|..++.|.+-+++|- --++|+|..|-.|++.|+..+. ....+. +|.+.|.++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~Ls--GHr~~vlaV 194 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLS--GHRDGVLAV 194 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeec--cccCceEEE
Confidence 9999999999999999999999999999999999983 3467778888999999999884 345565 999999999
Q ss_pred EEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 174 CWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 174 afspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.|+|. .+.+|++++.|+.|++||+|..
T Consensus 195 ~Wsp~-----------~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 195 EWSPS-----------SEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EeccC-----------ceeEEEecCCCceEEEEEeecc
Confidence 99997 4456777788999999999865
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2e-14 Score=150.57 Aligned_cols=219 Identities=16% Similarity=0.238 Sum_probs=165.2
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDE-HLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
.|.|+|. .+++++....++.||+++.+.. ....+.....+..+..+++++ +|+..+..|.|+|....+++. +..+
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~el-i~s~ 341 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKEL-ITSF 341 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhh-hhee
Confidence 4789998 8999999999999999887743 334444456788889999998 899999999999998887763 3333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCe--EEEEEecCCCEEEEEEcCCeEEEEECCC--
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPF--SSLAFIDDDWILTAGTSNGRVVFYDIRG-- 153 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~I--tsLafsPdg~~LasGs~DG~V~VWDlrt-- 153 (568)
.-.+.|..++|+.+++.|+.++.+|.|++||++...+++.+..++.| +++|.++++.+||+|+..|.|.|||.++
T Consensus 342 -KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 342 -KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred -eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 34677999999999999999999999999999999999988777665 4667778999999999999999999763
Q ss_pred ---CCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCc
Q 008356 154 ---KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNS 230 (568)
Q Consensus 154 ---~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~ssl 230 (568)
..+|++.+. .-...|+++.|+++.+.|+.++. ..+..+++-.+.....-..+..+....+-..++
T Consensus 421 ~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~----------~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~ 488 (514)
T KOG2055|consen 421 ASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASR----------VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCM 488 (514)
T ss_pred ccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhh----------ccccceEEEeccceeeeccCCCCCCcccceEEE
Confidence 335555554 45678999999999999887744 235556665554443333333322222234455
Q ss_pred ccCC
Q 008356 231 RSGP 234 (568)
Q Consensus 231 t~ss 234 (568)
.+++
T Consensus 489 aFSP 492 (514)
T KOG2055|consen 489 AFSP 492 (514)
T ss_pred EecC
Confidence 5554
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=149.08 Aligned_cols=195 Identities=16% Similarity=0.295 Sum_probs=156.2
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCC-ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASG-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg-~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
||+.+.+.||++-.+|.|.||++..+ -+...+.++.+..|..++|++.++ |++.+-+|.|.-||+.+.++ ...+..
T Consensus 32 A~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl~~lk~-~~~~d~ 108 (691)
T KOG2048|consen 32 AYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDLHTLKQ-KYNIDS 108 (691)
T ss_pred EEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEecccCce-eEEecC
Confidence 57888899999999999999999754 455677887889999999997664 88999999999999998874 556777
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
..+.|++++.+|.+..++.|++||.++.+++..++..... ..++++.++.|+|++..|+.|+.||.|++||...+..
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 8889999999999999999999998888888877765433 4568999999999999999999999999999998753
Q ss_pred ceEEEee-c-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 157 PLTVLRA-C-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 157 ~v~~l~~-~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.. .... . .....|+++.|-.+ ..++++..-|.|.+||.....
T Consensus 189 ~~-~~~~~~d~l~k~~~~iVWSv~~Lrd-------------~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 189 LH-IITMQLDRLSKREPTIVWSVLFLRD-------------STIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EE-EeeecccccccCCceEEEEEEEeec-------------CcEEEecCCceEEEEcccCcc
Confidence 32 1111 0 12234566665543 256777778999999986544
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.58 E-value=6.5e-14 Score=151.36 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=136.3
Q ss_pred CEEEEEECCCcEEEEECCCCcee------EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 008356 7 EHLASISLSGDLILHNLASGAKA------AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v------~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~ 79 (568)
..|+.+.+||.|.++|....... .... .|...|.++.|.| ++.+|++++.|.++++||+.+.... ...+.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence 46888999999999997643321 2333 3788899999999 6668999999999999999877632 234789
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce--------------------eeE--------eecCCCeEE---
Q 008356 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRP--------------------SSC--------ITYEAPFSS--- 127 (568)
Q Consensus 80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~--------------------v~~--------~~h~~~Its--- 127 (568)
|...|.+++|.| +...|++|+.||.|.|||++.... ... ..+...|..
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 999999999999 788999999999999999975320 000 012233444
Q ss_pred EEEecCCCEEEEEEc-CCeEEEEECCCCCCc-----eEEEeecCC---CCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356 128 LAFIDDDWILTAGTS-NGRVVFYDIRGKPQP-----LTVLRACSS---SEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (568)
Q Consensus 128 LafsPdg~~LasGs~-DG~V~VWDlrt~~~~-----v~~l~~~~h---~~~VtsLafspdg~~Las~s~ssd~~~Lls~s 198 (568)
+.+..|...||+++. |+.|+|||++..... ........| .-.+.++..+. .+.+|++.+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------sGt~L~AsC 290 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------SGTYLFASC 290 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC------------CCCeEEEEe
Confidence 555567778888776 999999999975432 222221123 22344454443 345566666
Q ss_pred CCCcEEcCCCCCCC
Q 008356 199 VGDSILMPDPLPSV 212 (568)
Q Consensus 199 ~Dg~V~VWDlr~~~ 212 (568)
.|+.|++|+++...
T Consensus 291 tD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 291 TDNSIYFYNMRSLS 304 (720)
T ss_pred cCCcEEEEeccccC
Confidence 79999999998654
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.57 E-value=3.2e-14 Score=153.65 Aligned_cols=151 Identities=17% Similarity=0.226 Sum_probs=112.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-------
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP------- 72 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~------- 72 (568)
|-|...+|++++.|.++++||+++.+++.. +.+ |...|..++|.+.+..+|++|+.||.|.|||++....
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~ 186 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFD 186 (720)
T ss_pred cCCCceeEEEccCCceeeeeeeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHh
Confidence 556556789999999999999999887765 665 8888999999999999999999999999999853320
Q ss_pred -------------------eeEEeccCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEe---------e
Q 008356 73 -------------------KVSWLKQHSAPTAG---ISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI---------T 120 (568)
Q Consensus 73 -------------------~v~~l~~H~~~Vts---lafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~---------~ 120 (568)
.+...+.+...|.+ +.+..|...|++++. |+.|+|||++........ .
T Consensus 187 ~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t 266 (720)
T KOG0321|consen 187 NRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPT 266 (720)
T ss_pred hhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccC
Confidence 01223334444555 555568899999987 999999999875433221 1
Q ss_pred c---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 121 Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 121 h---~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
+ ...+.++..+..|.+|++.+.|+.|++|++..
T Consensus 267 ~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s 302 (720)
T KOG0321|consen 267 HSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS 302 (720)
T ss_pred cccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence 2 23466677776777877777788888888874
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=6.8e-14 Score=156.29 Aligned_cols=172 Identities=16% Similarity=0.253 Sum_probs=144.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ- 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~- 79 (568)
+|+-+|+++|.|+.|-.|++-++.+......+++ |+..|.+|.|+|++. +|++.+-||.|++||++++... ..+.+
T Consensus 103 ~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~-~tl~~v 179 (933)
T KOG1274|consen 103 AVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILS-KTLTGV 179 (933)
T ss_pred EEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCC-EEEEEecCceEEEEEcccchhh-hhcccC
Confidence 4678899999999999999999999888888887 888999999999998 8999999999999999877632 22211
Q ss_pred -------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 80 -------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 80 -------H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
....+..++|+|++..++....|+.|++|+..+......+. +...+.++.|+|+|+|||+++.||.|.||
T Consensus 180 ~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vW 259 (933)
T KOG1274|consen 180 DKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVW 259 (933)
T ss_pred CccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEE
Confidence 14567889999998899999999999999999988776662 44459999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeE
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVF 182 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~L 182 (568)
|.++... +.....|++++|.|+...|
T Consensus 260 nv~t~~~-------~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 260 NVDTHER-------HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred ecccchh-------ccccceeEEEecCCCCCee
Confidence 9998422 1334679999999986654
No 145
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.3e-14 Score=143.30 Aligned_cols=176 Identities=15% Similarity=0.165 Sum_probs=137.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---CCC----ceeEEe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT---GRS----PKVSWL 77 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~---t~~----~~v~~l 77 (568)
++.+|++++.|.+|.||++. |+.+..+.. ........+.+|+|+ ++++++.--.|++|.+- .+. ..+..+
T Consensus 198 ~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L 274 (420)
T KOG2096|consen 198 NAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL 274 (420)
T ss_pred CceEEEEecCCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhhee
Confidence 46789999999999999997 888888875 333445678999999 78888888899999972 221 125578
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-------RPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-------~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
++|...|..++|+++...+++++.||++++||+.-. +.+... ...+....++++|+|+.|++... ..
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~ 353 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SD 353 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-Cc
Confidence 999999999999999999999999999999998531 222222 12344558999999999988764 57
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
+++|..+.++.....-. .|...|.+++|+++|+++++|+
T Consensus 354 l~~~~se~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 354 LKVFASEDGKDYPELED--IHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred eEEEEcccCccchhHHH--hhcCceeeEEecCCCcEEeeec
Confidence 99999988643222222 5889999999999999999983
No 146
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=5.9e-14 Score=149.25 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=133.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEe---eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC---------
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAEL---KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------- 71 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l---~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------- 71 (568)
+++--|++|-.-|.|++.|....+..+.+ ....+..|+|++|-|.++.+|+.+-.+|.+++||.....
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45556777888889999887652211111 112357899999999998899999999999999863110
Q ss_pred ------------------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEec
Q 008356 72 ------------------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFID 132 (568)
Q Consensus 72 ------------------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsP 132 (568)
.++..+......|+.++|+|||++|++++.||.++|+|..+.+.+..+ .+-+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 011122223457899999999999999999999999999988877666 4678899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 133 dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
||++|++|++|.-|.||.+...+ -+-+.++|..+|..|+|+|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence 99999999999999999998763 3344569999999999995
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.56 E-value=2.8e-14 Score=150.44 Aligned_cols=188 Identities=11% Similarity=0.079 Sum_probs=156.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+.+||.++.+++..||.|.|||+.+...++.|++ |.+.+.||.++++|. .|.+|+-|.+|+.||++++.... -...
T Consensus 516 a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGt-klWTGGlDntvRcWDlregrqlq--qhdF 591 (705)
T KOG0639|consen 516 AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQ--QHDF 591 (705)
T ss_pred hcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhh--hhhh
Confidence 4689999999999999999999999999999998 666779999999998 69999999999999998876321 2234
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
...|.++.++|++.+++.|=+++.|.+......+......|+.-|.++.|.+.|+++++.+.|+.+..|..-.+.. +
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas---i 668 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---I 668 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc---e
Confidence 5789999999999999999999999999888777777778999999999999999999999999999998877643 2
Q ss_pred EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 161 LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 161 l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
+. ......|.+..++.+.+||+++ +.|....||.+
T Consensus 669 Fq-skE~SsVlsCDIS~ddkyIVTG------------SGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQ-SKESSSVLSCDISFDDKYIVTG------------SGDKKATVYEV 703 (705)
T ss_pred ee-ccccCcceeeeeccCceEEEec------------CCCcceEEEEE
Confidence 22 1356789999988876666665 44666555543
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=7.8e-14 Score=140.91 Aligned_cols=196 Identities=17% Similarity=0.216 Sum_probs=148.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCC-C---CcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeEEe
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPN-E---QVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVSWL 77 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~---~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl-~t~~-~~v~~l 77 (568)
|+..++++.+.+.-|++||.-+|+..+.+.+.. . ..-.+++|+|||.+ |++ +.+..|++||+ +.+. +.+...
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq-lfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ-LFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe-Eee-cccceEEEeeccCCCCCCcchhh
Confidence 677889999999999999999999888776421 1 23457999999994 443 67799999999 3332 222222
Q ss_pred -----ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc-CCeEEEE
Q 008356 78 -----KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS-NGRVVFY 149 (568)
Q Consensus 78 -----~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~-DG~V~VW 149 (568)
.+..+.|.|++|+| +.+.++.++....+-||.-..+.++..+ +|++.|+.++|.++|+.|.+|.. |-.|.+|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 23467899999999 7779999999999999988888888777 79999999999999999999874 7889999
Q ss_pred ECCCCCCceEEEeecCCCC-CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 150 DIRGKPQPLTVLRACSSSE-AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~-~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
|+|....++-.+. .|.+ .-..|-|.- ...+.+|++++.||.|++||++....
T Consensus 279 DiR~~~~pv~~L~--rhv~~TNQRI~FDl----------d~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 279 DIRYSRDPVYALE--RHVGDTNQRILFDL----------DPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred eehhccchhhhhh--hhccCccceEEEec----------CCCCceeeccCCCccEEEEecCCCCC
Confidence 9998877665555 4443 223344432 12445566667799999999987654
No 149
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=4.9e-13 Score=134.89 Aligned_cols=168 Identities=12% Similarity=0.167 Sum_probs=133.3
Q ss_pred EEEEEECCCcEEEEECCCCc------e------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356 8 HLASISLSGDLILHNLASGA------K------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~------~------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~ 75 (568)
.|++|+....|.-+++.-.. + +..+. .|...|++++.+ ++ ++++|+.|-+|+|||++.... ..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~-aH~~sitavAVs--~~-~~aSGssDetI~IYDm~k~~q-lg 77 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFS-AHAGSITALAVS--GP-YVASGSSDETIHIYDMRKRKQ-LG 77 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeecccccc-ccccceeEEEec--ce-eEeccCCCCcEEEEeccchhh-hc
Confidence 47888888888888764222 1 22233 377889999886 45 899999999999999988764 66
Q ss_pred EeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 76 WLKQHSAPTAGISFSSDDK--IIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~--~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
.+..|.+.|+++.|.+.-. +|++|+.||.|.+|+.....++..+ .|.+.|+.++++|.+++.++.+.|+.+++||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 6778999999999998554 8999999999999999999888887 699999999999999999999999999999998
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las 184 (568)
.++.. .+++ ..+ .-+.+.|+|.|.+++.
T Consensus 158 ~Gr~a-~v~~-L~~--~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 158 RGRVA-FVLN-LKN--KATLVSWSPQGDHFVV 185 (362)
T ss_pred cCccc-eeec-cCC--cceeeEEcCCCCEEEE
Confidence 76432 2222 122 2344899999886553
No 150
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.54 E-value=1.2e-13 Score=150.53 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=142.4
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl 87 (568)
.|++|+.|.+++||.. +++...+++ |...|.+++..|++ .++||+.|.+|++|.-.+ .++.+.+|.+.|+.+
T Consensus 114 ~~iSgSWD~TakvW~~--~~l~~~l~g-H~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~---~l~tf~gHtD~VRgL 185 (745)
T KOG0301|consen 114 TLISGSWDSTAKVWRI--GELVYSLQG-HTASVWAVASLPEN--TYVTGSADKTIKLWKGGT---LLKTFSGHTDCVRGL 185 (745)
T ss_pred ceEecccccceEEecc--hhhhcccCC-cchheeeeeecCCC--cEEeccCcceeeeccCCc---hhhhhccchhheeee
Confidence 3899999999999986 556666776 77888899999886 599999999999998632 367899999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCC
Q 008356 88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSS 167 (568)
Q Consensus 88 afsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~ 167 (568)
++.++ ..|++|+.||.|++||+.........+|..-+.++....++..++++++|++++||+.. .+.+.+. |.
T Consensus 186 ~vl~~-~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I~---lP 258 (745)
T KOG0301|consen 186 AVLDD-SHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVIT---LP 258 (745)
T ss_pred EEecC-CCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEEe---cC
Confidence 99954 46899999999999999555555556899999999988888999999999999999987 3445554 43
Q ss_pred -CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 168 -EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 168 -~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
..|+++++-++|.. +.++.||.|+||-.++
T Consensus 259 ttsiWsa~~L~NgDI-------------vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGDI-------------VVGGSDGRVRVFTVDK 289 (745)
T ss_pred ccceEEEEEeeCCCE-------------EEeccCceEEEEEecc
Confidence 47888888876543 3344599999997764
No 151
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.5e-14 Score=145.17 Aligned_cols=204 Identities=20% Similarity=0.207 Sum_probs=150.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-cc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL-KQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l-~~ 79 (568)
+|+.+|..|++|+.||+++||++.+...+..... |...|.++.|+||++ +|++-+.| ..+||+.+++......- ..
T Consensus 151 af~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~-~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~a~~t~~~ 227 (398)
T KOG0771|consen 151 AFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA-HHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAALARKTPFS 227 (398)
T ss_pred EEcCCCCEeeeccccceEEEEecCcchhhhhhHh-hcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchhhhcCCcc
Confidence 5889999999999999999999877777666665 556789999999998 88888888 99999998875322211 22
Q ss_pred CCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEECCCCce------eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356 80 HSAPTAGISFSSDD---KI--IASVGLDKKLYTYDPGSRRP------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (568)
Q Consensus 80 H~~~VtslafsPdg---~~--LaSgs~DGtV~IWDlrt~~~------v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V 148 (568)
.+.....+.|..+. .+ ++....-+.|+.||+..... ...+.....|.+++.+++|++++.|+.||.|.|
T Consensus 228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 33446667777655 22 23333455677777653221 112234568999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
|+....+.. .... ..|...|+.+.|+|+.++++.. ....+..++.-..|..+.+-.++.
T Consensus 308 ~~~~~lq~~-~~vk-~aH~~~VT~ltF~Pdsr~~~sv-Ss~~~~~v~~l~vd~~~~~~~~~~ 366 (398)
T KOG0771|consen 308 YDAKSLQRL-QYVK-EAHLGFVTGLTFSPDSRYLASV-SSDNEAAVTKLAVDKTMQLHRLPK 366 (398)
T ss_pred EEeceeeee-Eeeh-hhheeeeeeEEEcCCcCccccc-ccCCceeEEEEeeccccccccccc
Confidence 999887432 2222 3789999999999999998875 455667777777777777665543
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.53 E-value=1.6e-13 Score=149.52 Aligned_cols=204 Identities=19% Similarity=0.274 Sum_probs=155.1
Q ss_pred ccCCCCEEEEEECCC-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---
Q 008356 2 YNCKDEHLASISLSG-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK--- 73 (568)
Q Consensus 2 fSpdG~~LasGs~DG-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~--- 73 (568)
.+|+|++||++++.. .|+||+..+...+..+.. |.-.|+.|+|+|+++ +|+++++|+++.+|........
T Consensus 533 ~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 533 ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCc-EEEEeecCceEEeeeeecccchhhh
Confidence 478999999998754 599999998888888887 777888999999998 8999999999999998543321
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cee---eEeecCCCeEEEEEec-----CCCEEEEEEcC
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR--RPS---SCITYEAPFSSLAFID-----DDWILTAGTSN 143 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~--~~v---~~~~h~~~ItsLafsP-----dg~~LasGs~D 143 (568)
....+.|...|.++.|+|++++++|++.|++|++|..... +.+ ..+.+...|+.++|.| .+..+++|.+.
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecc
Confidence 3457899999999999999999999999999999998876 333 2346888999999988 24588999999
Q ss_pred CeEEEEECCCCCCce---------EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 144 GRVVFYDIRGKPQPL---------TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 144 G~V~VWDlrt~~~~v---------~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|.|.||......+.. ..-....|...|+.+.|.|....--. ...+...|..++.|.+++++++.
T Consensus 691 GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~--~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 691 GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWV--EDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccc--cccceeEEeeecccceeEEeecc
Confidence 999999865211111 11112257788999999985211000 01223346777779999998763
No 153
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=3e-13 Score=135.05 Aligned_cols=196 Identities=18% Similarity=0.280 Sum_probs=147.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce-eEEeeC----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAK-AAELKD----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~-v~~l~~----~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~ 76 (568)
|.|++..|++.. |..|.+|+++.+.. +.++.. .+....+.-+|+|..+.-.+....|+++..||+++..+....
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcch
Confidence 789999998776 88999999987765 444432 234456677899833222445567899999999988766666
Q ss_pred eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECC
Q 008356 77 LKQHSAPTAGISFSSD-DKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 77 l~~H~~~VtslafsPd-g~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlr 152 (568)
-..|...|..++|+|+ ..+|++|+.||.|++||+|.. .++..+ .|...+.++.|+| ..++|++|+.|..|.+|...
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 7789999999999994 557899999999999999964 456666 7999999999999 46789999999999999664
Q ss_pred CCC-----------------------Cc-----eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356 153 GKP-----------------------QP-----LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (568)
Q Consensus 153 t~~-----------------------~~-----v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~ 204 (568)
.-. ++ +..+. .|...|++++|+...++ ++++-+.||.|.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsadPW-----------iFASLSYDGRvi 356 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSADPW-----------IFASLSYDGRVI 356 (370)
T ss_pred ccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCCCe-----------eEEEeccCceEE
Confidence 210 00 11222 58899999999876554 455567788887
Q ss_pred cCCCCCC
Q 008356 205 MPDPLPS 211 (568)
Q Consensus 205 VWDlr~~ 211 (568)
|=.+.++
T Consensus 357 Is~V~r~ 363 (370)
T KOG1007|consen 357 ISSVPRF 363 (370)
T ss_pred eecCChh
Confidence 7666543
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=9.4e-13 Score=128.90 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=145.7
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC---------Cce-eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS---------GAK-AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t---------g~~-v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
+++|.+++|++|..+|.|.++.+.. ++. +...+ .|++.+..++|..+ +|++|++ |.|+-|..+..
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq-ahdgpiy~~~f~d~---~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ-AHDGPIYYLAFHDD---FLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc-ccCCCeeeeeeehh---heeeccC-ceEEEeeehhh
Confidence 5789999999999999999998753 222 23334 48889999999843 5666655 99999987543
Q ss_pred Cc----e--e-EEeccC-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEE
Q 008356 71 SP----K--V-SWLKQH-----SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWIL 137 (568)
Q Consensus 71 ~~----~--v-~~l~~H-----~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~L 137 (568)
.. + . .....| --.|+++-..|..+-|+.++.|+.++.||+++|+..+.+ +|.+.|.+++-......+
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence 21 0 0 011112 235899999998887888889999999999999999888 799999999996666778
Q ss_pred EEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 138 TAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 138 asGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
++|++||+++|||+++.+ .++++..+.|....+ | .|++|-+- ..++..+++++ ...+.+|.+|...+...
T Consensus 172 lsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lR-----p~~g~wigal--a~~edWlvCGg-Gp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLR-----PDWGKWIGAL--AVNEDWLVCGG-GPKLSLWHLRSSESTCV 242 (325)
T ss_pred eecCCCccEEEEeccccc-eeEEeccccChhhcC-----cccCceeEEE--eccCceEEecC-CCceeEEeccCCCceEE
Confidence 999999999999999984 456665444433211 1 23332221 11344455554 77899999998776555
Q ss_pred ccc
Q 008356 217 VSL 219 (568)
Q Consensus 217 ~~~ 219 (568)
+..
T Consensus 243 fpi 245 (325)
T KOG0649|consen 243 FPI 245 (325)
T ss_pred Eec
Confidence 444
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.9e-14 Score=162.38 Aligned_cols=195 Identities=15% Similarity=0.261 Sum_probs=148.6
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCceeEEe-eCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKD-EHLASISLSGDLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
||+.. ++||+|+.||.|.|||+...+.-... .....+.|.+++|+..-.++|++++.+|.+.|||++.+++ +..+..
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~ 202 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSD 202 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-cccccc
Confidence 67765 49999999999999999875543333 2123567899999999999999999999999999998875 444444
Q ss_pred CCC--CeEEEEEcCC-CCEEEEEeCCC---eEEEEECCCC-ceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEE
Q 008356 80 HSA--PTAGISFSSD-DKIIASVGLDK---KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYD 150 (568)
Q Consensus 80 H~~--~VtslafsPd-g~~LaSgs~DG---tV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWD 150 (568)
|.. .+..++|+|+ ...|+++++|. .|.+||+|.- .+++++ .|...|.++.|++.+ .+|++++.|++|.+|+
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEec
Confidence 443 4788999994 45677776555 6999999974 466666 799999999999965 8999999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.++++ .+..+. ....++..+.|.|....+ +...+-||.|-||.+...
T Consensus 283 ~~tgE-vl~~~p--~~~nW~fdv~w~pr~P~~-----------~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 283 PNTGE-VLGELP--AQGNWCFDVQWCPRNPSV-----------MAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCce-EeeecC--CCCcceeeeeecCCCcch-----------hhhheeccceeeeeeecC
Confidence 99974 223333 456889999999975533 333344777777776543
No 156
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.51 E-value=1.8e-12 Score=143.81 Aligned_cols=306 Identities=16% Similarity=0.203 Sum_probs=189.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~ 83 (568)
|-=+.+|.|..+|+|.|+|+..++.+..++. ..+.|+.+.|.-||..++++|+..|.+.+||++..+........|.+.
T Consensus 212 PaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s 290 (910)
T KOG1539|consen 212 PALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS 290 (910)
T ss_pred CcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC
Confidence 4446789999999999999999999999994 358899999999999899999999999999998765333333345444
Q ss_pred eEEEEEcCCCCEEEEEe-----------------------------------------------CCCeEEEEECC-----
Q 008356 84 TAGISFSSDDKIIASVG-----------------------------------------------LDKKLYTYDPG----- 111 (568)
Q Consensus 84 VtslafsPdg~~LaSgs-----------------------------------------------~DGtV~IWDlr----- 111 (568)
|....|.+....+++.+ .|++++.+++.
T Consensus 291 v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~ 370 (910)
T KOG1539|consen 291 VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQS 370 (910)
T ss_pred cccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHh
Confidence 44444444444444444 44433333320
Q ss_pred ------------------------------------------------------------CCce-eeEeecC------CC
Q 008356 112 ------------------------------------------------------------SRRP-SSCITYE------AP 124 (568)
Q Consensus 112 ------------------------------------------------------------t~~~-v~~~~h~------~~ 124 (568)
+... ...+.+. ..
T Consensus 371 ~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~ 450 (910)
T KOG1539|consen 371 QELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDIN 450 (910)
T ss_pred HhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcc
Confidence 0000 0001111 45
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356 125 FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (568)
Q Consensus 125 ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~ 204 (568)
+.+++.++.|++.+.|...|.|-+|+++.+-......+...|.++|++++.+.- +..+++++.+|-++
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~------------n~~~vsa~~~Gilk 518 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT------------NRLLVSAGADGILK 518 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCC------------CceEEEccCcceEE
Confidence 778889999999999999999999999987432222223479999999998764 34566667799999
Q ss_pred cCCCCCCCccccccccccccCC----CCCcccCCCCCCccCccCCCCCCCCccc-ccC-CCCCceeeecCCCCCCcCCcc
Q 008356 205 MPDPLPSVTTSSVSLSTAVSGS----RPNSRSGPSAEASSLTVGGTGEETPQRS-YLR-PGGPLARLHAPRSSYNFKDDM 278 (568)
Q Consensus 205 VWDlr~~~~~~s~~~s~~~~~~----~sslt~sssG~~ss~~~~s~~e~tP~~~-~~~-~g~~~~~L~~~r~~~~~~dd~ 278 (568)
+||.........+.....+... .+.+.+...+. .++.-. ...|--.. ..| -++.+..+.
T Consensus 519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd-f~I~vv--D~~t~kvvR~f~gh~nritd~~------------ 583 (910)
T KOG1539|consen 519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD-FSIRVV--DVVTRKVVREFWGHGNRITDMT------------ 583 (910)
T ss_pred EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc-eeEEEE--EchhhhhhHHhhccccceeeeE------------
Confidence 9999877755555554443331 11111111111 000000 01111111 122 223333222
Q ss_pred ccccccccc-----ccCCCCcccccccCcCcccccccCCCCCCccccCCCCcc-cccccCCCceeeeeecc
Q 008356 279 EVFSPLVDV-----QPITPSLDKLWDGHEGAKKDHLPIDKKPSSMLFPSSSRR-FPYAEDGSNEHSVFDWK 343 (568)
Q Consensus 279 ~vfsP~~dv-----~~~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 343 (568)
||| |- ..|+ +-++.||-.+|.++|.|.+|+...++.| |++.- +.-.+.+.+...+|-=|
T Consensus 584 --FS~--DgrWlisasmD-~tIr~wDlpt~~lID~~~vd~~~~sls~-SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 584 --FSP--DGRWLISASMD-STIRTWDLPTGTLIDGLLVDSPCTSLSF-SPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred --eCC--CCcEEEEeecC-CcEEEEeccCcceeeeEecCCcceeeEE-CCCCCEEEEEEecCceEEEEEch
Confidence 555 22 1122 4599999999999999999998875556 44433 44445555555555433
No 157
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.51 E-value=1.8e-13 Score=136.57 Aligned_cols=152 Identities=28% Similarity=0.432 Sum_probs=128.3
Q ss_pred CccC--CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 1 MYNC--KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 1 afSp--dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
+|+| ||+.+++. .|+++..||+++.++...+...|...|+.+.|+|+-+++|++|++||.|+|||.+..+.++..+.
T Consensus 177 ~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 177 AWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred ccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 3666 67777766 58899999999999888898889999999999999999999999999999999998887899999
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------------------ce-----eeEe-ecCCCeEE
Q 008356 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR------------------------RP-----SSCI-TYEAPFSS 127 (568)
Q Consensus 79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~------------------------~~-----v~~~-~h~~~Its 127 (568)
+|...|.++.|+| ...+|++++.|..|.+|....- ++ +..+ .|++.|.+
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 9999999999999 7788999999999999864210 00 1122 48889999
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCC
Q 008356 128 LAFID-DDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 128 LafsP-dg~~LasGs~DG~V~VWDlrt 153 (568)
++|+. |..++|+-+.||+|.|=.+..
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCCh
Confidence 99997 566788889999999876643
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.1e-13 Score=135.39 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=123.2
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe
Q 008356 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI 119 (568)
Q Consensus 40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~ 119 (568)
..|+.|++.|. +|+.|+.||.|.|||+.+.. ..+.+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 57789999998 89999999999999998877 46778999999999999999999999999999999999998877665
Q ss_pred ecCCCeEEEE-----------------------------------------------EecCCCEEEEEEcCCeEEEEECC
Q 008356 120 TYEAPFSSLA-----------------------------------------------FIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 120 ~h~~~ItsLa-----------------------------------------------fsPdg~~LasGs~DG~V~VWDlr 152 (568)
....+|..+. |.+.|+++++|...|.+.+||..
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 4444333322 34457899999999999999998
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+.+ ++..++. .....|..+.|+..|++++ ..+.|+.|+.|+++...
T Consensus 184 t~e-~vas~ri-ts~~~IK~I~~s~~g~~li------------iNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 184 TLE-CVASFRI-TSVQAIKQIIVSRKGRFLI------------INTSDRVIRTYEISDID 229 (405)
T ss_pred hhe-eeeeeee-chheeeeEEEEeccCcEEE------------EecCCceEEEEehhhhc
Confidence 873 3333331 1235677788887655543 34559999999987443
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.7e-13 Score=147.22 Aligned_cols=190 Identities=16% Similarity=0.236 Sum_probs=141.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---------------
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--------------- 67 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl--------------- 67 (568)
.|.|..|++|+.||+|+||.+.+|+++..+. ..+.|.||+|+|.+...++++.....+.|-+-
T Consensus 409 dp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell 486 (733)
T KOG0650|consen 409 DPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELL 486 (733)
T ss_pred cCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhh
Confidence 5789999999999999999999999999887 56799999999987654544444444444432
Q ss_pred ------------------CC---CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc---------
Q 008356 68 ------------------TG---RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRR--------- 114 (568)
Q Consensus 68 ------------------~t---~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~--------- 114 (568)
.. .+.-++....|...|+.|.|+..|.||+++..++ .|.|+++....
T Consensus 487 ~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk 566 (733)
T KOG0650|consen 487 ASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK 566 (733)
T ss_pred hcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence 10 0001234456888899999999999999887543 67787774321
Q ss_pred --eeeE------------------------------e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 115 --PSSC------------------------------I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 115 --~v~~------------------------------~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
++.. + .....|..++++|.|..|++|+.|+.+..||+.-..++.+.+
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred CceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 1110 0 123457789999999999999999999999999888888888
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
+ .|...|++|+||+.-+.++++ +.|+.+.||.-
T Consensus 647 r--~H~~avr~Va~H~ryPLfas~------------sdDgtv~Vfhg 679 (733)
T KOG0650|consen 647 R--LHEKAVRSVAFHKRYPLFASG------------SDDGTVIVFHG 679 (733)
T ss_pred h--hhhhhhhhhhhccccceeeee------------cCCCcEEEEee
Confidence 8 789999999999965555554 55777777753
No 160
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.50 E-value=2.3e-12 Score=136.39 Aligned_cols=173 Identities=15% Similarity=0.274 Sum_probs=142.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce--------
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-------- 73 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-------- 73 (568)
|.++|+ +++|..+|.|.||+..+.+..+... .|.+.|.+++...+|. |++|+.|+.|..||-.-.+..
T Consensus 254 F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 254 FLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhc
Confidence 566665 6789999999999998888777777 5888899999999986 677999999999994211100
Q ss_pred -------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC
Q 008356 74 -------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE 122 (568)
Q Consensus 74 -------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~ 122 (568)
.....+|.+....++.+|+.+.+++++.|+.|++|+ ..+++......
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~ 407 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE 407 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec
Confidence 113456888889999999999999999999999999 66677777788
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
.++.|+.|+|.| .+++|...|...|.|.++. ..+.+.. ...++++++|+|+|.+|+.+
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~---d~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT---DNEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe---cCCceEEEEEcCCCCEEEEe
Confidence 999999999999 9999999999999999985 3333333 37899999999999888877
No 161
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.6e-13 Score=140.64 Aligned_cols=170 Identities=18% Similarity=0.251 Sum_probs=134.6
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC---------CceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS 71 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~t---------g~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~ 71 (568)
|+-||.+|++|+.||.|.+|.+.+ -+..+.+.. |.-.|+++....-+ +..+++++.|.++++||+..+.
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 678999999999999999998642 234555654 77888988887652 3379999999999999998886
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------------eeeEe-ecCC--CeEEEEEec
Q 008356 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR----------------PSSCI-TYEA--PFSSLAFID 132 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~----------------~v~~~-~h~~--~ItsLafsP 132 (568)
.+ .-...+..+++++.+|-++.++.|+.+|.|.+.++..-. .+..+ +|.+ .|+|++++-
T Consensus 210 LL--lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 210 LL--LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ee--EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 32 233456789999999999999999999999998875422 11222 4666 899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 133 DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 133 dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
||..|++|+.||.|+|||+... ++++.+. ...++|+.+.+.|
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~--~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSK-QCIRTLQ--TSKGPVTNLQINP 329 (476)
T ss_pred CccEEEeeCCCCCEEEEecchH-HHHHHHh--hhccccceeEeec
Confidence 9999999999999999999987 4444443 2458899999876
No 162
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.49 E-value=4.3e-13 Score=146.14 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=145.9
Q ss_pred EEEEEECCCcEEEEECCCCceeEEee------------------------------------CCCCCcEEEEEEccCCCe
Q 008356 8 HLASISLSGDLILHNLASGAKAAELK------------------------------------DPNEQVLRVLDYSRNSRH 51 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~------------------------------------~~h~~~Vs~Lafspdg~~ 51 (568)
.+++++.|++|++||++.+..-..+. ....-.+++++.+|+++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq- 472 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ- 472 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-
Confidence 47899999999999987522100000 01233589999999998
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ec-----
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TY----- 121 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h----- 121 (568)
.|++|..-|.++|||+...+. ...+..|...|.|+.|+. ..++|++++.|+-|++||+...- ++..+ .|
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred eecccCccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 699999999999999988763 667889999999999985 45789999999999999984321 11111 11
Q ss_pred --------------------------------------------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 122 --------------------------------------------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 122 --------------------------------------------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
+..+..++..|..+++++++.|+.|+|||+..+++.
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 223567777888899999999999999999998654
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
.......+|.+....+..+|.|.|++ +.+.|+++.++|.-...+...
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~a------------tScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLA------------TSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEE------------EeecCCceEEEEeccchhhhh
Confidence 44334457878888899999665554 446699999999876665443
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.48 E-value=7.4e-13 Score=133.92 Aligned_cols=181 Identities=14% Similarity=0.256 Sum_probs=140.6
Q ss_pred CccCCCCEEEEEECCCcEEEEEC-CCCceeE---Eee---CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 008356 1 MYNCKDEHLASISLSGDLILHNL-ASGAKAA---ELK---DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl-~tg~~v~---~l~---~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~ 73 (568)
+|+|||.+|++| ....|+|||+ +.|+... ++. ....+.|.+++|+|.....++.|+.-..+-||.-....+
T Consensus 165 ~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p- 242 (406)
T KOG2919|consen 165 QFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP- 242 (406)
T ss_pred EecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-
Confidence 489999999876 5678999998 4554321 111 124678999999998877899999999999998877774
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ceeeEe-ecCC-CeEE--EEEecCCCEEEEEEcCCeEE
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR-RPSSCI-TYEA-PFSS--LAFIDDDWILTAGTSNGRVV 147 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~-~~v~~~-~h~~-~Its--LafsPdg~~LasGs~DG~V~ 147 (568)
...+.+|.+.|+.++|.++|+.|++|. .|.+|.+||+|.- .++..+ .|.. .-.. ....|++++|++|+.||.|+
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 677889999999999999999999998 4778999999974 344333 3332 2223 44567899999999999999
Q ss_pred EEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 148 FYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 148 VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+||++....++..+. .|...|+.++++|--++++++
T Consensus 323 vwdlk~~gn~~sv~~--~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTG--NYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred EEecCCCCCcccccc--cccccccceecCcccceeeec
Confidence 999998555555554 688999999999976666665
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.48 E-value=9.8e-12 Score=125.91 Aligned_cols=192 Identities=23% Similarity=0.382 Sum_probs=148.0
Q ss_pred cCCCC-EEEEEEC-CCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 008356 3 NCKDE-HLASISL-SGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 3 SpdG~-~LasGs~-DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~ 78 (568)
++++. +++..+. |+.+.+|+... ......+.. |...|.+++|++++. .++.++. |+.+++|++.... .+..+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 195 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLSTLA 195 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEEeec
Confidence 45565 4444444 89999999987 666667775 777888999999998 6777775 9999999998754 366777
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceee-Ee-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 79 QHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSS-CI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 79 ~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~-~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
.|...|.+++|+|++. .+++++.|+.|++||...+..+. .+ .|.... ...|++++.++++++.|+.+++||++...
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 8999999999999887 55666999999999999777766 34 455554 33899999899999999999999999775
Q ss_pred CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 156 QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 156 ~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.....+ ..|...|.++.|.|++..+++ ++.|+.+++||.....
T Consensus 275 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~------------~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 275 SLLRTL--SGHSSSVLSVAFSPDGKLLAS------------GSSDGTVRLWDLETGK 317 (466)
T ss_pred cEEEEE--ecCCccEEEEEECCCCCEEEE------------eeCCCcEEEEEcCCCc
Confidence 523333 478899999999986444433 4446778888776544
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.47 E-value=4.1e-13 Score=140.73 Aligned_cols=168 Identities=20% Similarity=0.270 Sum_probs=136.6
Q ss_pred CCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCC---ceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 008356 36 NEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRS---PKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDP 110 (568)
Q Consensus 36 h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~---~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDl 110 (568)
+.+.|.+++|+|... .++++|..-|+|-+||+.+.+ ..+..+..|..+|.++.|+| +...|++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 667899999999876 789999999999999995332 33667889999999999999 8889999999999999999
Q ss_pred CCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 111 GSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 111 rt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
+.......+ .....+..+.|+.+...++.+..=|...+||+|+.......+. -|...|+.|+++|..+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~--lh~kKI~sv~~NP~~p------- 335 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR--LHKKKITSVALNPVCP------- 335 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh--hhhcccceeecCCCCc-------
Confidence 876433222 2345678888988888888888878999999999865444444 5778999999999743
Q ss_pred CCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 188 CKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 188 ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
.++++++.|++++|||+|......+
T Consensus 336 ----~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 336 ----WFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred ----hheeecccCcceeeeehhhhcCCCC
Confidence 4567778899999999998776554
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.2e-12 Score=140.14 Aligned_cols=195 Identities=16% Similarity=0.191 Sum_probs=153.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--------CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS--------GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-- 70 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t--------g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-- 70 (568)
+|++..-.|++++.||+|.+|+++. -+.+.+|++ |.++|-|+++..++. .+++|+.||+|+.|++..+
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~-~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGE-HCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCce-EEEeeccCceeeeeccCCCCC
Confidence 3677778899999999999999932 135677887 788899999999998 7999999999999976321
Q ss_pred -------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--------------------------
Q 008356 71 -------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-------------------------- 117 (568)
Q Consensus 71 -------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~-------------------------- 117 (568)
.....++.+|.+.|+.++++.....|++|+.||+|+.|+.....+..
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 12356788999999999999988889999999999999975543300
Q ss_pred ------------------Eee--------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCee
Q 008356 118 ------------------CIT--------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVS 171 (568)
Q Consensus 118 ------------------~~~--------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~Vt 171 (568)
++. ....+..+.++|.+.+.+++..|+.|+++|..++.....+. .|...++
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~---a~~~svt 535 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV---AHKDSVT 535 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee---eccceec
Confidence 000 01336678888889999999999999999999885333332 6889999
Q ss_pred EEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 172 SLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 172 sLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
++++.|+|.++.++ +.|+.+++|.+..-.
T Consensus 536 slai~~ng~~l~s~------------s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 536 SLAIDPNGPYLMSG------------SHDGSVRLWKLDVKT 564 (577)
T ss_pred ceeecCCCceEEee------------cCCceeehhhccchh
Confidence 99999987666555 569999999875433
No 167
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.47 E-value=9.9e-14 Score=141.85 Aligned_cols=150 Identities=15% Similarity=0.218 Sum_probs=127.3
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 2 YNCKD-EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
|||.. ..|++++.|+.|.|||+.++..+..+. ..-..+.|+|+|+.- .|++|.+|..++.||++.....+....+|
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeaf-nF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAF-NFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCcccc-ceeeccccccceehhhhhhcccchhhccc
Confidence 67765 467777899999999999988877665 234456799999654 79999999999999999887778889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
...|.+++|+|.|+.|++|+.|.+|+||..+.+....+. ..-..|.|+.|+-|.+++++|+.|+.|++|..+..
T Consensus 272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999999999999999999999999999999887654333 23456999999999999999999999999987754
No 168
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.47 E-value=2.4e-12 Score=136.21 Aligned_cols=143 Identities=17% Similarity=0.372 Sum_probs=119.6
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~ 115 (568)
|.+....++..|+.+ ++++++.|+.|++|+ ..+ ..+-+.-..++.|++|+|.+ .++.|...|...+.|.++...
T Consensus 367 h~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k--~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 367 HGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHK--LEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred cccceeeEEcCCChh-heeeccCcceEEEcc--CCc--eeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee
Confidence 444566788888876 799999999999999 333 45556667889999999998 999999999999999999877
Q ss_pred eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 116 v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+.......++++++|+|+|.+||+|+.|+.|+||-+.........+... |..+|+.+.|++|++++.+.
T Consensus 441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEec
Confidence 7777778999999999999999999999999999998766555554432 44899999999988777665
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.45 E-value=7.5e-13 Score=137.15 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=124.8
Q ss_pred ccCCCC-EEEEEECCCcEEEEECCCCce---------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC---
Q 008356 2 YNCKDE-HLASISLSGDLILHNLASGAK---------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT--- 68 (568)
Q Consensus 2 fSpdG~-~LasGs~DG~V~VWDl~tg~~---------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~--- 68 (568)
|.++.. .|++|+.|..|+||.++.+.. +..+. +|...|+++.|+|+|+ +|++|+++|.|.+|...
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~ 98 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVR 98 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcC
Confidence 344444 899999999999998864321 12233 5788899999999998 99999999999999875
Q ss_pred -----C-----C--CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC
Q 008356 69 -----G-----R--SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW 135 (568)
Q Consensus 69 -----t-----~--~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~ 135 (568)
+ . -.....+.+|...|+.++|+|+++++++++.|..+++||+..|+..... .|...+..++|.|.++
T Consensus 99 ~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 99 IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 2 1 0124567789999999999999999999999999999999999988887 6999999999999999
Q ss_pred EEEEEEcCCeEEEEECCC
Q 008356 136 ILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 136 ~LasGs~DG~V~VWDlrt 153 (568)
++++-+.|...+++++..
T Consensus 179 yv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 179 YVASKSSDRHPEGFSAKL 196 (434)
T ss_pred hhhhhccCcccceeeeee
Confidence 999998888777776654
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=4.4e-12 Score=138.20 Aligned_cols=178 Identities=18% Similarity=0.211 Sum_probs=141.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~ 79 (568)
+|. ++.+|.+.+.+|.|.-||+.+++....+.. ..+.|..++.+|.+. .++.|++||.++.++....... .+.+..
T Consensus 76 ~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~r 152 (691)
T KOG2048|consen 76 AWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMR 152 (691)
T ss_pred EEc-cCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccc
Confidence 355 566788888999999999999999888885 778999999999987 7999999997777777655422 234455
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-----c----CCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-----Y----EAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-----h----~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
.+++|.++.|+|++..|+.|+.||.|++||...+..+..+. . ..-|+++.|-.+ ..|++|...|.|.+||
T Consensus 153 q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWD 231 (691)
T ss_pred ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEc
Confidence 67899999999999999999999999999999988776331 1 123667777755 5789999999999999
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
...+. .++... .|.+.|.+++..+++..++++
T Consensus 232 ~~~gT-LiqS~~--~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 232 SIFGT-LIQSHS--CHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ccCcc-hhhhhh--hhhcceeEEEEcCCCCeEEEc
Confidence 98874 233333 588999999999876666655
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1e-11 Score=125.09 Aligned_cols=189 Identities=13% Similarity=0.220 Sum_probs=134.9
Q ss_pred CCEEEEEECCCcEEEEECCC---------CceeEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce--
Q 008356 6 DEHLASISLSGDLILHNLAS---------GAKAAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-- 73 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~t---------g~~v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~-- 73 (568)
|+.+|+++.|++|.||.-.. ......+.. ....|.+|+|.|..- -.|++++.||+||||+....-..
T Consensus 73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred cceEEEEecCCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 78999999999999997421 113344543 567889999998632 25889999999999997443211
Q ss_pred ---eEEe-------ccCCCCeEEEEEcC---CCCEEEEEeCC-----CeEEEEECCCCc-e---eeEe-ecCCCeEEEEE
Q 008356 74 ---VSWL-------KQHSAPTAGISFSS---DDKIIASVGLD-----KKLYTYDPGSRR-P---SSCI-TYEAPFSSLAF 130 (568)
Q Consensus 74 ---v~~l-------~~H~~~VtslafsP---dg~~LaSgs~D-----GtV~IWDlrt~~-~---v~~~-~h~~~ItsLaf 130 (568)
...+ ..+..+..|+.|+| ...+|+.|+.+ +.++||....+. . +..+ .|..+|+.++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 1112 24667889999998 44567777755 378888765432 2 2222 68999999999
Q ss_pred ecC----CCEEEEEEcCCeEEEEECCCCC----------------CceEEEe-ecCCCCCeeEEEEccCCCeEEEeccCC
Q 008356 131 IDD----DWILTAGTSNGRVVFYDIRGKP----------------QPLTVLR-ACSSSEAVSSLCWQRAKPVFIDETTCK 189 (568)
Q Consensus 131 sPd----g~~LasGs~DG~V~VWDlrt~~----------------~~v~~l~-~~~h~~~VtsLafspdg~~Las~s~ss 189 (568)
.|+ -.+||+++.|| |+||.++... -+++.+. .-+|.+.|..+.|+-.|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG---------- 300 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG---------- 300 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee----------
Confidence 996 36799999999 9999998311 1223333 33799999999998744
Q ss_pred CCeEEEEecCCCcEEcCCC
Q 008356 190 AETALLGGAVGDSILMPDP 208 (568)
Q Consensus 190 d~~~Lls~s~Dg~V~VWDl 208 (568)
.+|.+.+.||+|++|..
T Consensus 301 --tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 301 --TILSSTGDDGCVRLWKA 317 (361)
T ss_pred --eEEeecCCCceeeehhh
Confidence 45666677999999974
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.43 E-value=3.8e-11 Score=121.57 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=149.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEE-ccCCCeEEEEEeC-CCeEEEEECCCCCceeEEec
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDY-SRNSRHLLVTAGD-DGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Laf-spdg~~lLaTgs~-DGtV~VWDl~t~~~~v~~l~ 78 (568)
|.+.+..++.++.|+.+.+|+...+. .+..+...+...+..+.+ .+++..+++..+. |+.+++||..........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 56778888889899999999998776 666666533335666676 6776634554444 99999999987233477889
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCC-EEEEEEcCCeEEEEECCCCC
Q 008356 79 QHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDW-ILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~-~LasGs~DG~V~VWDlrt~~ 155 (568)
.|...|.++.|+|++.+++.++. |+.+++|++..+..+..+ .|...+.+++|+|++. +++.++.|+.|++||.....
T Consensus 153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~ 232 (466)
T COG2319 153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK 232 (466)
T ss_pred cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence 99999999999999998888885 999999999987777666 4789999999999988 55555899999999888542
Q ss_pred CceE-EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 156 QPLT-VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 156 ~~v~-~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
... .+. .|...+ -..|++++ ..+++++.|+.+++||++....
T Consensus 233 -~~~~~~~--~~~~~~-~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 233 -LLRSTLS--GHSDSV-VSSFSPDG------------SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -EEeeecC--CCCcce-eEeECCCC------------CEEEEecCCCcEEEeeecCCCc
Confidence 222 233 566664 33788864 3344567799999999986554
No 173
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=9.8e-12 Score=121.27 Aligned_cols=148 Identities=16% Similarity=0.290 Sum_probs=109.8
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEE-EeCCCeEEEEECCC
Q 008356 2 YNCKDEHLASISL----------SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVT-AGDDGTLHLWDTTG 69 (568)
Q Consensus 2 fSpdG~~LasGs~----------DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaT-gs~DGtV~VWDl~t 69 (568)
|+++|++|++-.. -|...||.++ .+..+..+.-...+.|.+++|+|+++.++++ |..++.|.+||++.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~ 92 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG 92 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc
Confidence 8899988775433 1345566653 3334455544345579999999999865444 44678999999973
Q ss_pred CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc----
Q 008356 70 RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---- 142 (568)
Q Consensus 70 ~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~---DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---- 142 (568)
.. +..+ +...++.+.|+|+|++|++++. .|.|.+||+++.+.+....|.. +..++|+|+|++|+++..
T Consensus 93 ~~--i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 93 KK--IFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRL 167 (194)
T ss_pred cE--eEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccce
Confidence 32 3333 3567899999999999999874 4679999999888887776654 789999999999999875
Q ss_pred --CCeEEEEECCCC
Q 008356 143 --NGRVVFYDIRGK 154 (568)
Q Consensus 143 --DG~V~VWDlrt~ 154 (568)
|+.++||+..+.
T Consensus 168 ~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 168 RVDNGFKIWSFQGR 181 (194)
T ss_pred eccccEEEEEecCe
Confidence 677999998754
No 174
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.9e-11 Score=130.63 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=126.2
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~ 75 (568)
+|+|||+.|+..+.+ ..|++||+.+++... +.. ......++.|+|+|+.++++.+.+| .|++||+.++. ..
T Consensus 210 ~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~--~~ 285 (433)
T PRK04922 210 AWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ--LT 285 (433)
T ss_pred cCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC--eE
Confidence 489999999987643 469999998876543 222 2334456899999997777777666 59999998776 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW 149 (568)
.+..+......++|+||+++|+.++. ++ .|+++|+.+++.............++|+|+|++|+....++ .|.+|
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~ 365 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVM 365 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEE
Confidence 56666666678999999998887764 44 47788887776544433444455789999999998876443 59999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
|+.+.. . ..+. +........|+|+|++++...
T Consensus 366 d~~~g~-~-~~Lt---~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 366 DLSTGS-V-RTLT---PGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred ECCCCC-e-EECC---CCCCCCCceECCCCCEEEEEE
Confidence 998763 2 2332 223455679999998876653
No 175
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.3e-11 Score=131.12 Aligned_cols=187 Identities=17% Similarity=0.169 Sum_probs=125.8
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC--CCCCceeE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT--TGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl--~t~~~~v~ 75 (568)
+|+|||+.|+..+.+ ..|++||+.+++.... .. ..+.+....|+|+|+.++++.+.+|...||.+ .++. ..
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 277 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-AN-FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG--LR 277 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ec-CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC--cE
Confidence 489999999887643 3599999988875433 22 23445678999999976677888887666655 4443 44
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTY--DPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IW--Dlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW 149 (568)
.+..+...+....|+||+++|+..+. ++...+| |+.+++..............+|+|||++|+..+.++ .|.+|
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~ 357 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQ 357 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 55556666778899999998887664 4444444 555555433333333455688999999998877654 69999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEE
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLG 196 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls 196 (568)
|+.+... ..+. .......+.|+|+|+.|+......+...+..
T Consensus 358 d~~~g~~--~~lt---~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 358 DLATGQV--TALT---DTTRDESPSFAPNGRYILYATQQGGRSVLAA 399 (427)
T ss_pred ECCCCCe--EEcc---CCCCccCceECCCCCEEEEEEecCCCEEEEE
Confidence 9987632 2332 1233467899999998877654333333333
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.41 E-value=4.8e-12 Score=126.60 Aligned_cols=180 Identities=14% Similarity=0.290 Sum_probs=137.4
Q ss_pred CCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec--c
Q 008356 5 KDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK--Q 79 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~--~ 79 (568)
+-++|.+.+-|-+..|||++++.. ..++.+ |+..|.+|+|...+..+|++.+.||.|++||++..+--..... .
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEe-cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 347899999999999999998733 344554 8888999999998888999999999999999987652211111 1
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCC-eEEEEECCCC-ceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 008356 80 HSAPTAGISFSS-DDKIIASVGLDK-KLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 80 H~~~VtslafsP-dg~~LaSgs~DG-tV~IWDlrt~-~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~ 154 (568)
...+...++|++ |.+++++-..|. .|.|.|+|.. .++..+ .|.+.|+.++|.|. ...|++++.|..+.+||+...
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 246788999999 778888877655 7999999975 345555 79999999999996 578999999999999999875
Q ss_pred CC-ce-EEEeecCCCCCeeEEEEcc-CCCeEEEe
Q 008356 155 PQ-PL-TVLRACSSSEAVSSLCWQR-AKPVFIDE 185 (568)
Q Consensus 155 ~~-~v-~~l~~~~h~~~VtsLafsp-dg~~Las~ 185 (568)
.+ .. .-+-.+.-.+.|+.+.|++ ...+++.+
T Consensus 321 ~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 321 PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred cccCCCCchhhhhccceeeeeeecccCCCEEEEE
Confidence 33 11 1111123567899999996 45666666
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.41 E-value=2.8e-12 Score=138.33 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=148.7
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce
Q 008356 2 YNC-KDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK 73 (568)
Q Consensus 2 fSp-dG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~ 73 (568)
|+| |.++||+++.||.|+||.+..+. ....+.. |.+.|+.+.|+|-...+|++++.|-+|++||+.+...
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~-h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~- 712 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI-HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL- 712 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec-ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-
Confidence 555 56789999999999999987543 3445665 7788999999998777999999999999999988873
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe--ecCCCeEEEEEecCCCEEEEEEcCC----eE
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI--TYEAPFSSLAFIDDDWILTAGTSNG----RV 146 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~--~h~~~ItsLafsPdg~~LasGs~DG----~V 146 (568)
...+.+|.+.|.+++|+|+|+.+++.+.||+|++|+.+.++ ++..- .....--.+.|.-+|+++++.+.|. .|
T Consensus 713 ~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv 792 (1012)
T KOG1445|consen 713 YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQV 792 (1012)
T ss_pred hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhh
Confidence 56789999999999999999999999999999999998764 33332 1234455678888999998877654 58
Q ss_pred EEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 147 VFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 147 ~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.+||.++-. .++. +..+...|. .|+-..+-+.+.+++++-.|..|.+|++..-.+
T Consensus 793 ~~Y~Aq~l~~~pl~----------t~~lDvaps--~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 793 QMYDAQTLDLRPLY----------TQVLDVAPS--PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred hhhhhhhccCCcce----------eeeecccCc--cccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 889877532 1111 122233331 223223444667888888899999999876443
No 178
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=1.8e-11 Score=119.48 Aligned_cols=155 Identities=17% Similarity=0.266 Sum_probs=109.9
Q ss_pred EEEEccCCCeEEEEEeC---------CCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEE
Q 008356 42 VLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASV--GLDKKLYTYD 109 (568)
Q Consensus 42 ~Lafspdg~~lLaTgs~---------DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSg--s~DGtV~IWD 109 (568)
.+.|+++|+.+++.... -+...||.++.....+..+.- ..++|.+++|+|+++.|+++ ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 37899999877766652 234666666444333444433 34579999999999987655 3567999999
Q ss_pred CCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 110 PGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 110 lrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||++..+ .+....|. .++.++|+|+|++++++.
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK----KISTFEHS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE----EeeccccC-cEEEEEEcCCCCEEEEEE
Confidence 97 55555553 567889999999999999874 4679999999652 23333344 478999999999999873
Q ss_pred cCCCCeEEEEecCCCcEEcCCCC
Q 008356 187 TCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
... --..|..++||+..
T Consensus 163 t~~------r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 163 TSP------RLRVDNGFKIWSFQ 179 (194)
T ss_pred ecc------ceeccccEEEEEec
Confidence 321 11248889999863
No 179
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.2e-11 Score=126.81 Aligned_cols=198 Identities=15% Similarity=0.208 Sum_probs=150.0
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------- 72 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------- 72 (568)
+||+.-..+|++..|-.|++||-.. ++...++......|.|++|-|.+...|+.|+..| |.+|.......
T Consensus 105 aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 105 AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccc
Confidence 4666555678899999999999655 6667777656778999999999887888888755 88998743211
Q ss_pred -----eeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 73 -----KVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 73 -----~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
.+..-.+| .+|+++.|++|+..+++++ .|..|.|||..++..+... ...+.+.-+.|+||+.+|.++.-|+.
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce
Confidence 12223344 6799999999999999998 5668999999999887776 56678999999999999999999999
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW 206 (568)
.++|+........+.. -..+.|...+|+|+|++|+.. +.++..+++..-++.--+.
T Consensus 262 frlw~e~q~wt~erw~---lgsgrvqtacWspcGsfLLf~--~sgsp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWI---LGSGRVQTACWSPCGSFLLFA--CSGSPRLYSLTFDGEDSVF 317 (445)
T ss_pred eeeehhcccceeccee---ccCCceeeeeecCCCCEEEEE--EcCCceEEEEeecCCCccc
Confidence 9999766543222222 345689999999999998766 3466666666655544333
No 180
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=7.6e-11 Score=128.38 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=123.5
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~ 75 (568)
+|+|||+.|+..+. +..|++|++.+++...... ....+..++|+|+|+.++++...+| .|++||+.++. ..
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~~ 280 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IR 280 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--EE
Confidence 48999999987643 3579999998876433221 2223445899999996666666665 48899998776 34
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW 149 (568)
.+..+...+....|+||++.|+.++.+ + .|+++|+.+++..............+|+|||++|+....+ ..|.+|
T Consensus 281 ~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 281 QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 455555678899999999998877754 3 5666688777654444444456778999999999886643 358889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
|+.+.. ...+.. ........|+|||++|+..+.
T Consensus 361 dl~~g~--~~~Lt~---~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 361 DLATGG--VQVLTD---TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred ECCCCC--eEEeCC---CCCCCCceECCCCCEEEEEEc
Confidence 998763 233331 122346789999988877643
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=4.9e-12 Score=134.63 Aligned_cols=189 Identities=15% Similarity=0.230 Sum_probs=144.2
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEE
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAG 86 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vts 86 (568)
+.|+.++.||.+.|.+ ..++....+.. |.+.+.+-.|+++|. -|+++++||.|++|.-.+.- ...+......|+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~A-H~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGML--RStl~Q~~~~v~c 150 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISA-HAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGML--RSTVVQNEESIRC 150 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhh-hhhhhhhcccCCCCc-eeeeecCCceEEEEeccchH--HHHHhhcCceeEE
Confidence 5688899999999988 46776667776 777888899999998 69999999999999976543 3455667788999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC
Q 008356 87 ISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS 165 (568)
Q Consensus 87 lafsPdg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~ 165 (568)
++|.|+.+.++.|..+. +.|=-+.- .++++...|++-|.++.|++..+++++|++|-+.+|||-... ..+....
T Consensus 151 ~~W~p~S~~vl~c~g~h-~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----~Lf~S~~ 225 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----NLFTSAA 225 (737)
T ss_pred EEECCCCCceEEecCCe-EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----ccccCCh
Confidence 99999887777765443 55555543 345555689999999999999999999999999999998775 2344457
Q ss_pred CCCCeeEEEEccCCCeEEE-----------------eccCCCCeEEEEecCCCcEEc
Q 008356 166 SSEAVSSLCWQRAKPVFID-----------------ETTCKAETALLGGAVGDSILM 205 (568)
Q Consensus 166 h~~~VtsLafspdg~~Las-----------------~s~ssd~~~Lls~s~Dg~V~V 205 (568)
|..+|++++|+|+..|++. -+++.|+..+.+++..|.|.+
T Consensus 226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 226 EEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred hccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 8889999999998554431 124556666666665555543
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.38 E-value=5.9e-12 Score=134.01 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=136.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|||||.-|+++|.||.|++|. ++|-+...+. .....|+|++|.|+..+++++.+ +.+.|=-+.-+. .+..++.|.
T Consensus 112 W~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHD 186 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHD 186 (737)
T ss_pred cCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-ceeEEeccC
Confidence 899999999999999999999 4565444443 36788999999999988777655 445555555444 366789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
+-|.++.|++..++|++|++|-..++||-........-.|+.+|++++|+|+ ..+++++. +.+++ ..
T Consensus 187 GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~-------- 253 (737)
T KOG1524|consen 187 GLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SS-------- 253 (737)
T ss_pred cEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeee-eeeee---cC--------
Confidence 9999999999999999999999999999775555455579999999999999 66666664 23331 11
Q ss_pred eecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCc
Q 008356 162 RACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~ 202 (568)
...+.|..++|++||..++++ +..+.++++-.-+..
T Consensus 254 ---p~~GSifnlsWS~DGTQ~a~g--t~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 254 ---PRVGSIFNLSWSADGTQATCG--TSTGQLIVAYAIEQQ 289 (737)
T ss_pred ---CCccceEEEEEcCCCceeecc--ccCceEEEeeeehhh
Confidence 245779999999999998877 345555555444443
No 183
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=9.3e-11 Score=127.72 Aligned_cols=176 Identities=14% Similarity=0.168 Sum_probs=128.7
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~ 75 (568)
+|+|||+.|+..+. +..|++||+.+++.. .+.. ..+.+...+|+|+|++++++.+.++. |++||+.++. ..
T Consensus 208 ~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 283 (435)
T PRK05137 208 RFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT--TT 283 (435)
T ss_pred EECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc--eE
Confidence 48999999988764 468999999888654 3332 34456678999999977777777765 7777887765 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW 149 (568)
.+..+........|+||++.|+..+. ++ .|++||+..++..........+....|+|+|++|+....+ ..|.+|
T Consensus 284 ~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~ 363 (435)
T PRK05137 284 RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVM 363 (435)
T ss_pred EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEE
Confidence 56667777788999999999887764 33 6889998877665554455567778999999999887643 368889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
|+.+.. ...+. ....+..+.|+|+|+.|+..
T Consensus 364 d~~~~~--~~~lt---~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 364 KPDGSG--ERILT---SGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred ECCCCc--eEecc---CCCCCCCCeECCCCCEEEEE
Confidence 986553 23332 22346788999998887665
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=1.5e-10 Score=120.98 Aligned_cols=197 Identities=9% Similarity=0.031 Sum_probs=129.0
Q ss_pred CccCCCCEEEEEE-CCCcEEEEECC-CCce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---e
Q 008356 1 MYNCKDEHLASIS-LSGDLILHNLA-SGAK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---K 73 (568)
Q Consensus 1 afSpdG~~LasGs-~DG~V~VWDl~-tg~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~ 73 (568)
+++|++++|++++ .++.|.+|++. +++. +.... .......+.|+|+++.++++...++.|.+||++.... .
T Consensus 41 ~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 41 VISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred EECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 3789999987765 47889999986 3432 22222 2234467999999985444444689999999964321 1
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceee-------EeecCCCeEEEEEecCCCEEEEEEc-CC
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-------CITYEAPFSSLAFIDDDWILTAGTS-NG 144 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~-------~~~h~~~ItsLafsPdg~~LasGs~-DG 144 (568)
+..+ .+...+.+++++|+++++++++ .++.|.+||+.+...+. ..........++|+|++++|+++.. ++
T Consensus 119 ~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 119 IQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred eeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC
Confidence 2222 2334567889999999886555 66899999997633221 1223455778999999999988876 89
Q ss_pred eEEEEECCCCCCceEE---Eeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 145 RVVFYDIRGKPQPLTV---LRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 145 ~V~VWDlrt~~~~v~~---l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.|.+||++.....++. +... .+......+.++|++++++++ ...++.|.+|++...
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~-----------~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC-----------DRTASLISVFSVSED 260 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe-----------cCCCCeEEEEEEeCC
Confidence 9999999742111222 2111 112233468889987766554 234678888887543
No 185
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.37 E-value=1.6e-10 Score=124.11 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=128.7
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~ 75 (568)
+|+|||++|+.+..+ ..|++||+.+++...... +...+.+++|+|+++.++++...++ .|++||+.++. ..
T Consensus 196 ~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~--~~ 271 (417)
T TIGR02800 196 AWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ--LT 271 (417)
T ss_pred cCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC--EE
Confidence 489999999987654 479999998886543322 3345566899999986666666555 58888987765 44
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC---eEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG---RVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG---~V~VW 149 (568)
.+..+........|+|++++|+.++.. + .|+++|+.+++......+...+..+.|+|+|++|+....++ .|.+|
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 455565556678999999988776643 2 68889998877655545566678889999999999988776 79999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccC
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTC 188 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~s 188 (568)
|+.+.. ...+. .........|+|+|++|+.....
T Consensus 352 d~~~~~--~~~l~---~~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 352 DLDGGG--ERVLT---DTGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred eCCCCC--eEEcc---CCCCCCCceECCCCCEEEEEEeC
Confidence 988753 23333 11234556899999888766443
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.37 E-value=8.2e-11 Score=122.90 Aligned_cols=196 Identities=10% Similarity=0.076 Sum_probs=130.8
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Cc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-
Q 008356 1 MYNCKDEHLASISL-SGDLILHNLAS-GA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV- 74 (568)
Q Consensus 1 afSpdG~~LasGs~-DG~V~VWDl~t-g~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v- 74 (568)
+|+|++++|++++. ++.|.+|++++ +. .+..+. .......++++|+++.++++...++.|.+||++......
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 47899999888764 88999999964 32 222222 223456788999998666777778999999997632111
Q ss_pred -----EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC--Cce--eeEee-c------CCCeEEEEEecCCCEE
Q 008356 75 -----SWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS--RRP--SSCIT-Y------EAPFSSLAFIDDDWIL 137 (568)
Q Consensus 75 -----~~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt--~~~--v~~~~-h------~~~ItsLafsPdg~~L 137 (568)
.... .......+.|+|++++++++.. +++|.+||+.. ++. +..+. . ......+.++|++++|
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1111 2344678999999999988876 89999999973 322 22221 1 1123468899999999
Q ss_pred EEEEc-CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 138 TAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 138 asGs~-DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+++.. ++.|.+|+++......+.+....-......+.|+|+|++|++. ...++.|.+|++..
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va-----------~~~~~~v~v~~~~~ 305 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA-----------GQKSHHISVYEIDG 305 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE-----------EccCCcEEEEEEcC
Confidence 99864 7899999997653333333321112345678999987776544 33478888887643
No 187
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=1.9e-11 Score=133.59 Aligned_cols=196 Identities=13% Similarity=0.174 Sum_probs=148.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-------
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------- 71 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------- 71 (568)
|+++++.+++-+..|-.++|...+.. ....+. +|-+.|++++|.|.|+ +|++++.|.+-|||---+.+
T Consensus 324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EcCCCCEEEEecccCcEEEEeccCccceeeccccc-cccccceeeeecCCCC-EEEEeccccceeeecccccccceeeec
Confidence 78999999999999999999933322 222334 4777889999999998 78888888777765211000
Q ss_pred --------------------------c-----------------------------------------------------
Q 008356 72 --------------------------P----------------------------------------------------- 72 (568)
Q Consensus 72 --------------------------~----------------------------------------------------- 72 (568)
.
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 0
Q ss_pred -----------------------------------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCC
Q 008356 73 -----------------------------------KVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----KLYTYDPGS 112 (568)
Q Consensus 73 -----------------------------------~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-----tV~IWDlrt 112 (568)
.++.+.+|...|++++.+|++++|++++... .|++|+..+
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 0113678999999999999999999998654 699999998
Q ss_pred CceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE-EeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 113 RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV-LRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 113 ~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~-l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
-..+..+ .|.-.|+.++|+|||++|++.+.|+++.+|........... -....|...|.+..|+|+++++++
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaT------ 635 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFAT------ 635 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEE------
Confidence 7777655 79999999999999999999999999999998643222111 112378899999999997665554
Q ss_pred CeEEEEecCCCcEEcCCCCCC
Q 008356 191 ETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
++.|.+|++|.....
T Consensus 636 ------aSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 636 ------ASRDKKVKVWEEPDL 650 (764)
T ss_pred ------ecCCceEEEEeccCc
Confidence 466999999987654
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=6.4e-11 Score=121.87 Aligned_cols=146 Identities=17% Similarity=0.254 Sum_probs=118.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCC--CCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCceeEEeccCCC
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPKVSWLKQHSA 82 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~~v~~l~~H~~ 82 (568)
.++|+++-.+ .|+|||+.+.+.+..+... +...+.++.++..+.++.+=++ ..|.|+|||..+-+ .+..+..|.+
T Consensus 97 r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~ 174 (391)
T KOG2110|consen 97 RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKG 174 (391)
T ss_pred cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCC
Confidence 4566666555 4999999999998887653 3444665666665553333333 46899999998877 4778889999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 83 PTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGt-V~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.+.+++|+++|.+|+++++.|+ |||+.+.+++.+..+. ....|.+++|++++.+|++.+..++|+||.+..
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999999996 7899999999998884 345689999999999999999999999999875
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=6.2e-12 Score=128.11 Aligned_cols=148 Identities=25% Similarity=0.350 Sum_probs=123.4
Q ss_pred eEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeEe--e-cC-CC
Q 008356 51 HLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCI--T-YE-AP 124 (568)
Q Consensus 51 ~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~--~-h~-~~ 124 (568)
..++++..+|.|++||..+++ .+..++++...++.+.|.. ....+.+|+.||+|++||+|.......+ . +. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 368899999999999998865 4788999999999999987 5678999999999999999987665554 2 32 46
Q ss_pred eEEEEEecCCCEEEEEEc----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCC
Q 008356 125 FSSLAFIDDDWILTAGTS----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 200 (568)
Q Consensus 125 ItsLafsPdg~~LasGs~----DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~D 200 (568)
..|++.+-.++++++|.. +-.|.+||+|..++++..+.. .|..-|++++|+|. +..+|++++.|
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~-----------~pnlLlSGSvD 187 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPS-----------DPNLLLSGSVD 187 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh-hccCcceeEEecCC-----------CCCeEEeeccc
Confidence 788888878889999865 567999999998776555542 69999999999996 56678999999
Q ss_pred CcEEcCCCCCC
Q 008356 201 DSILMPDPLPS 211 (568)
Q Consensus 201 g~V~VWDlr~~ 211 (568)
|.|.+||+...
T Consensus 188 GLvnlfD~~~d 198 (376)
T KOG1188|consen 188 GLVNLFDTKKD 198 (376)
T ss_pred ceEEeeecCCC
Confidence 99999999754
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=6.2e-11 Score=128.95 Aligned_cols=173 Identities=19% Similarity=0.196 Sum_probs=116.5
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCceeE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~~~v~ 75 (568)
.|+|||++|+.++.+ ..|++||+.+++...... ..+....++|+|+|+.++++...+|.+.|| |+.++. ..
T Consensus 210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~ 285 (429)
T PRK01742 210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT--PS 285 (429)
T ss_pred eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC--eE
Confidence 489999999987654 369999998876432211 112234589999998655556678876555 555554 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC-ceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR-RPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~-~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.+..+...+..+.|+||++.|+.++ .++...+|++... .....+.+.. .++.|+|+|++|+..+.++ +.+||+.+
T Consensus 286 ~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 286 QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 5667777788999999999877655 5677777776432 2223333333 4578999999999887765 66699987
Q ss_pred CCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+.. ..+.. . .....+.|+|+|++|+..
T Consensus 363 g~~--~~lt~-~--~~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 363 GST--EVLSS-T--FLDESPSISPNGIMIIYS 389 (429)
T ss_pred CCe--EEecC-C--CCCCCceECCCCCEEEEE
Confidence 642 22221 1 123567899988777665
No 191
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.35 E-value=9.5e-12 Score=134.94 Aligned_cols=169 Identities=16% Similarity=0.329 Sum_probs=135.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|-|||..|+.+. +..+.|||..+|..+..+++ |++.|.|++|+.+|+ +|++|+.|..|.+|.-.-.. ..-..|
T Consensus 19 afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGk-rFASG~aDK~VI~W~~klEG---~LkYSH 92 (1081)
T KOG1538|consen 19 AFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGK-RFASGSADKSVIIWTSKLEG---ILKYSH 92 (1081)
T ss_pred EECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCc-eeccCCCceeEEEecccccc---eeeecc
Confidence 5889999888775 45799999999999999998 888999999999998 89999999999999865433 224579
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
.+.|.|+.|+|-...|++|+... .-+|...... +.......+|.+++|..||++|+.|..||+|.+-+-... ..+.+
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE-ek~~I 169 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE-EKVKI 169 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhh-ccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC-cceEE
Confidence 99999999999888899988554 5677655432 222234567899999999999999999999999876554 33344
Q ss_pred EeecCCCCCeeEEEEccC
Q 008356 161 LRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 161 l~~~~h~~~VtsLafspd 178 (568)
-+.-+...+|.+++|+|.
T Consensus 170 ~Rpgg~Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPS 187 (1081)
T ss_pred eCCCCCCCCceEEEecCC
Confidence 343456789999999996
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.9e-11 Score=126.16 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=125.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECC------CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356 2 YNCKDEHLASISLSGDLILHNLA------SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~------tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~ 75 (568)
|+.++++|++|+.|..++||+++ +.+.+.....+|..-|.|++|+-.++ .+++|..+++|.+.|+.+.+. .
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qs--i 140 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQS--I 140 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcceeEeeeccccee--e
Confidence 78889999999999999999985 34566666666778999999998776 899999999999999988773 2
Q ss_pred EeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEe---ecCCCeEEEEEecC-CCEEEEEEcCCeEE
Q 008356 76 WLKQHS---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCI---TYEAPFSSLAFIDD-DWILTAGTSNGRVV 147 (568)
Q Consensus 76 ~l~~H~---~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~---~h~~~ItsLafsPd-g~~LasGs~DG~V~ 147 (568)
.+..|. +.|+.+..+|..+.|++.+.++.|.+||++..+ +...+ .....+..+.|+|. ..+|++.+..+-+.
T Consensus 141 ~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 141 YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 334444 489999999999999999999999999998754 33222 46677889999995 57888888899999
Q ss_pred EEECCCCCC
Q 008356 148 FYDIRGKPQ 156 (568)
Q Consensus 148 VWDlrt~~~ 156 (568)
|||.+....
T Consensus 221 ~~D~R~~~~ 229 (609)
T KOG4227|consen 221 VFDRRMQAR 229 (609)
T ss_pred ceeeccccc
Confidence 999997544
No 193
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=131.43 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=125.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCC---------C
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTG---------R 70 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t---------~ 70 (568)
.|+.+|.+|++|+.|-.+.|||.-..+++..+...|..-|.+++|-|.. +.++++|..|..|++||+.. .
T Consensus 57 eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~ 136 (758)
T KOG1310|consen 57 EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM 136 (758)
T ss_pred eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc
Confidence 4899999999999999999999998889999988899999999999853 34789999999999999974 2
Q ss_pred CceeEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceee-------Ee----ecCCCeEEEEEecC-CCEE
Q 008356 71 SPKVSWLKQHSAPTAGISFSSDD-KIIASVGLDKKLYTYDPGSRRPSS-------CI----TYEAPFSSLAFIDD-DWIL 137 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsPdg-~~LaSgs~DGtV~IWDlrt~~~v~-------~~----~h~~~ItsLafsPd-g~~L 137 (568)
+.....+..|...|..++-.|++ +.+.++++||+|+-||+|...... .+ ..--...|+.++|. ..+|
T Consensus 137 ~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 137 EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 23356677899999999999976 899999999999999999742111 00 12234678999994 6789
Q ss_pred EEEEcCCeEEEEECC
Q 008356 138 TAGTSNGRVVFYDIR 152 (568)
Q Consensus 138 asGs~DG~V~VWDlr 152 (568)
++|+.|-..++||.|
T Consensus 217 aVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 217 AVGGSDPFARLYDRR 231 (758)
T ss_pred EecCCCchhhhhhhh
Confidence 999999999999965
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.33 E-value=2.5e-11 Score=122.90 Aligned_cols=195 Identities=14% Similarity=0.223 Sum_probs=150.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCc---eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC-CCCC-ceeE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGA---KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT-TGRS-PKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~---~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl-~t~~-~~v~ 75 (568)
||++|+..+|++-....|.||.....+ ...+++. |...|++|+|+|..+ .|++++.|..-+||.. .++. .+..
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~Wkptl 94 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTL 94 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccce
Confidence 689999999999999999999986554 5666775 788999999999987 6999999999999998 3333 2355
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-----eecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-----~~h~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
.+..++..++++.|+|..+.|++|+..+.|.||-++..+--.+ ..+...|.++.|+|++-+|++|+.|+.++||.
T Consensus 95 vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 95 VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEE
Confidence 6777899999999999999999999999999998876553322 24567799999999999999999999999985
Q ss_pred CC-----CCC--------CceEEE-eec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 151 IR-----GKP--------QPLTVL-RAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 151 lr-----t~~--------~~v~~l-~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.- ... .|+-.+ ... ...+.|..+.|+|+|..|+.. +.|..+.+=|..
T Consensus 175 ayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv------------~Hds~v~~~da~ 236 (361)
T KOG1523|consen 175 AYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV------------GHDSTVSFVDAA 236 (361)
T ss_pred EeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe------------cCCCceEEeecC
Confidence 42 111 111111 111 456889999999987666554 347777766643
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.6e-11 Score=137.25 Aligned_cols=194 Identities=12% Similarity=0.219 Sum_probs=145.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEecc
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQ 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~ 79 (568)
|.....+|+++|.-..|+|||+.....+..+.......++++.-+-.+.+++++|..||.|++||.+-.. ..+...+.
T Consensus 1173 WqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1173 WQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred hhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 4444556777777889999999888888877765666777776655554599999999999999996543 35788889
Q ss_pred CCCC--eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeE---ee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 80 HSAP--TAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSC---IT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 80 H~~~--VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~---~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
|... |..+.+.+.|. .|++|+.||.|++||+|....... .. ..+..+++..+++..++|+|+. +.|+||+
T Consensus 1253 h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 9887 99999998554 599999999999999998422221 12 2345999999999999999998 9999999
Q ss_pred CCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 151 IRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 151 lrt~~~~v~~l~~~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+.+... ..++.+ ...+.+.|++|||..-. ++.|..|..|.||-..+
T Consensus 1332 ~~G~~l--~~~k~n~~F~~q~~gs~scL~FHP~~~l------------lAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1332 LSGEQL--NIIKYNPGFMGQRIGSVSCLAFHPHRLL------------LAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred cChhhh--cccccCcccccCcCCCcceeeecchhHh------------hhhccCCceEEEeecCC
Confidence 987532 112111 23456899999995433 44445688888886544
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=4.2e-11 Score=135.60 Aligned_cols=197 Identities=18% Similarity=0.257 Sum_probs=143.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCC----Ccee
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGR----SPKV 74 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~----~~~v 74 (568)
|+|=...++++...-.|.|||.+.++....|..+. ...|+.+++. .+...++++|+.||.|+||+--.. ..++
T Consensus 1072 ~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred ecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE
Confidence 56667788888877899999999999887776533 4567777764 344558999999999999985221 1122
Q ss_pred EEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC--CCeEEEEEec-CCCEEEEEEcCC
Q 008356 75 SWLKQ-------HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE--APFSSLAFID-DDWILTAGTSNG 144 (568)
Q Consensus 75 ~~l~~-------H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~--~~ItsLafsP-dg~~LasGs~DG 144 (568)
.-+.. -.+.=.-++|.....+|+++|.-+.|+|||....+.+..+... ..++++.-+- .|+++++|..||
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence 22221 1111134678886667777777899999999998888777543 3455554433 479999999999
Q ss_pred eEEEEECCCCCC--ceEEEeecCCCCC--eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 145 RVVFYDIRGKPQ--PLTVLRACSSSEA--VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 145 ~V~VWDlrt~~~--~v~~l~~~~h~~~--VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
.|++||.|.... .+...+ .|... |..+.+.++| -..|++++.||.|++||+|..
T Consensus 1232 svRvyD~R~a~~ds~v~~~R--~h~~~~~Iv~~slq~~G-----------~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1232 SVRVYDRRMAPPDSLVCVYR--EHNDVEPIVHLSLQRQG-----------LGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceEEeecccCCccccceeec--ccCCcccceeEEeecCC-----------CcceeeeccCCeEEEEecccC
Confidence 999999997644 455555 56666 9999998853 126888899999999999974
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.32 E-value=1.7e-10 Score=118.70 Aligned_cols=184 Identities=13% Similarity=0.212 Sum_probs=137.2
Q ss_pred EEEEEECC--CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec---cCCC
Q 008356 8 HLASISLS--GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK---QHSA 82 (568)
Q Consensus 8 ~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~---~H~~ 82 (568)
++|..+.+ +.+++++.+.+..++++. ....|-+|.++.+ .|+++-++. |+|||+.+.+. ++.+. .+..
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mkl-LhTI~t~~~n~~ 130 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKL-LHTIETTPPNPK 130 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc---eEEEEEccc-EEEEeccccee-ehhhhccCCCcc
Confidence 44444433 458889988888888877 3456777888864 466555544 99999998874 33333 3555
Q ss_pred CeEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCce
Q 008356 83 PTAGISFSSDDKIIASVG--LDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPL 158 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs--~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~~v 158 (568)
.+.++.++..+.+++.-+ ..|.|.+||+.+-+++..+ .|++.+.+++|+++|.+||++++.|+ |+||.+..+.+..
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 677777777777888654 5689999999999988888 79999999999999999999999998 8999998885444
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
+..+. .-...|.+++|++++++|++. +.-++|.+|.+...
T Consensus 211 eFRRG-~~~~~IySL~Fs~ds~~L~~s------------S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 211 EFRRG-TYPVSIYSLSFSPDSQFLAAS------------SNTETVHIFKLEKV 250 (391)
T ss_pred eeeCC-ceeeEEEEEEECCCCCeEEEe------------cCCCeEEEEEeccc
Confidence 43332 224568999999987766555 44788999887653
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.2e-11 Score=123.60 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=135.7
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t------~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD 109 (568)
|.+.|++|.|+.+++ +|++|++|..+++|.++. .+++...-..|...|.|++|+...+.+++|+.+++|.+.|
T Consensus 55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 778899999999987 899999999999999842 2332222234567899999999899999999999999999
Q ss_pred CCCCceeeEeecCC---CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEec
Q 008356 110 PGSRRPSSCITYEA---PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 110 lrt~~~v~~~~h~~---~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s 186 (568)
+++.+.+.++.|.. .|..+..+|..+.|++.+.++.|.+||.+....+...+...........+.|+|..+
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P------ 207 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP------ 207 (609)
T ss_pred cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc------
Confidence 99999998887655 899999999999999999999999999998876666666545566788899999643
Q ss_pred cCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 187 TCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 187 ~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.+|++....+-+-+||+|..+
T Consensus 208 -----~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 208 -----ALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred -----eeEEeccccCCCCceeecccc
Confidence 345555667888999998755
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.31 E-value=2.1e-11 Score=120.69 Aligned_cols=185 Identities=16% Similarity=0.114 Sum_probs=137.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-------------
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------------- 73 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~------------- 73 (568)
++|.+|...|.|++|++.+.+.+..++.++...|+.+.-.|++. +.+-++|+.+.+|++......
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC 103 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC 103 (323)
T ss_pred hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc--hhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence 45888999999999999999988888877888999999898854 888999999999998652100
Q ss_pred ----------e-EE----------------------------eccCCCCeEEEEEcC-CC--CEEEEEeCCCeEEEEECC
Q 008356 74 ----------V-SW----------------------------LKQHSAPTAGISFSS-DD--KIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 74 ----------v-~~----------------------------l~~H~~~VtslafsP-dg--~~LaSgs~DGtV~IWDlr 111 (568)
. .. -....+.++|..|.. ++ -+++.|.++|.|.+||+.
T Consensus 104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence 0 00 001123356666543 22 246778899999999998
Q ss_pred CCceeeEe-----------ecC----------------------------------------------CCeEEEEEecCC
Q 008356 112 SRRPSSCI-----------TYE----------------------------------------------APFSSLAFIDDD 134 (568)
Q Consensus 112 t~~~v~~~-----------~h~----------------------------------------------~~ItsLafsPdg 134 (568)
++..+..+ .|. -.+..+.+.||+
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~ 263 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG 263 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC
Confidence 75211100 111 124456677899
Q ss_pred CEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 135 WILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 135 ~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
+++|+++.|++|+||..++. +++.++. .|.+.|++++|+|+. .+++.+++|..|-+|++
T Consensus 264 KIlATAGWD~RiRVyswrtl-~pLAVLk--yHsagvn~vAfspd~------------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 264 KILATAGWDHRIRVYSWRTL-NPLAVLK--YHSAGVNAVAFSPDC------------ELMAAASKDARISLWKL 322 (323)
T ss_pred cEEeecccCCcEEEEEeccC-Cchhhhh--hhhcceeEEEeCCCC------------chhhhccCCceEEeeec
Confidence 99999999999999999998 6778887 688999999999964 35556678999999986
No 200
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=9.4e-11 Score=121.34 Aligned_cols=194 Identities=19% Similarity=0.270 Sum_probs=150.2
Q ss_pred CCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEecc
Q 008356 6 DEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~ 79 (568)
+..|++|-.+|.+.+|..+.+. .+..+.. ...+..|.-++...+++++|+.. ..+.|||+...++ +..-+.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-iw~aKN 191 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-IWSAKN 191 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeec--CCceeeeccCCCCCceEecCchhcccceeeeeccccee-eeeccC
Confidence 3467888899999999987443 2333442 34566678888888788889998 8899999987642 221111
Q ss_pred ---------CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-ceeeEee-cCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356 80 ---------HSAPTAGISFSSD--DKIIASVGLDKKLYTYDPGSR-RPSSCIT-YEAPFSSLAFIDDDWILTAGTSNGRV 146 (568)
Q Consensus 80 ---------H~~~VtslafsPd--g~~LaSgs~DGtV~IWDlrt~-~~v~~~~-h~~~ItsLafsPdg~~LasGs~DG~V 146 (568)
-.-.++++.|.+. ...|+++..-+.|++||.+.+ +++..+. .+.+|+++...|.++++++|..-+.+
T Consensus 192 vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 192 VPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 1234788899986 899999999999999999975 4677774 67889999999999999999999999
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
..||++.+......+. +-.+.|+++..+|.+++++.+ +.|+.|+|+|+........
T Consensus 272 ~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las~------------GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLASC------------GLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred heecccCceeeccccC--CccCCcceEEEcCCCceEEee------------ccceeEEEeecccchhhhh
Confidence 9999999854444454 677899999999977666655 5699999999987554443
No 201
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.29 E-value=2.4e-11 Score=123.30 Aligned_cols=144 Identities=10% Similarity=0.152 Sum_probs=118.2
Q ss_pred EEEEEECCCcEEEEECCCC---ceeEEeeCC-CCCcEEEEEEccC---CCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 8 HLASISLSGDLILHNLASG---AKAAELKDP-NEQVLRVLDYSRN---SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg---~~v~~l~~~-h~~~Vs~Lafspd---g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
.+++.| .+.|.+|+.... +.+..+... +++....++|+-+ +.-+++.|+.-|.|+|.|+...+. ...+.+|
T Consensus 57 vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-~~~~~gh 134 (385)
T KOG1034|consen 57 VFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-SKNYRGH 134 (385)
T ss_pred eEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-ccceecc
Confidence 455554 457888887532 233444333 5666777888754 334788899999999999988774 6778999
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 81 SAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 81 ~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
...|+.+.++| +.+++++++.|..|++||+++..++.++ +|.+.|.++.|+.+|.+|++++.|..|++|++..
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 99999999999 6789999999999999999999999998 4899999999999999999999999999999983
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.29 E-value=3.9e-11 Score=124.57 Aligned_cols=152 Identities=21% Similarity=0.413 Sum_probs=124.1
Q ss_pred eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--------eeEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 008356 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--------KVSWLKQHSAPTAGISFSSDDKIIASVGLDK 103 (568)
Q Consensus 32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--------~v~~l~~H~~~VtslafsPdg~~LaSgs~DG 103 (568)
+.-|....+..+.|.++..+.+++|+.|..|++|.+..... .+..+..|...|+++.|+|+|.+|++|+.+|
T Consensus 8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 33345678888999998877899999999999999843321 1345778999999999999999999999999
Q ss_pred eEEEEECC--------C-----Cc--ee-eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 008356 104 KLYTYDPG--------S-----RR--PS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS 166 (568)
Q Consensus 104 tV~IWDlr--------t-----~~--~v-~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h 166 (568)
.|.+|-.. + .+ .+ ... .|...|..++|.|+++++++++-|..+++||++.+ +....+. .|
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G-~l~~~~~--dh 164 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG-QLLAILD--DH 164 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc-eeEeecc--cc
Confidence 99999765 2 10 11 112 58899999999999999999999999999999988 3445554 78
Q ss_pred CCCeeEEEEccCCCeEEEec
Q 008356 167 SEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 167 ~~~VtsLafspdg~~Las~s 186 (568)
...|..++|.|.++++++-+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred ccccceeecchhhhhhhhhc
Confidence 89999999999999988763
No 203
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.8e-11 Score=130.43 Aligned_cols=188 Identities=18% Similarity=0.321 Sum_probs=146.4
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
.||..|+||++...+ ..|.|+++...+...-|+. ..+.|.++.|+|... +|++++. ..|+|||+.... .+..+
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe-lvKkL 603 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE-LVKKL 603 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-HHHHH
Confidence 488999999987654 4699999977666655653 467788899999987 5666554 789999997754 45666
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC---
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR--- 152 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr--- 152 (568)
......|..++.+|.|..|+.++.|+.++.||+.-. ++.+.+ .|...++.++|++.-.++++|+.||.+.||.-+
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~ 683 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN 683 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence 667778999999999999999999999999999754 455555 588899999999999999999999999998543
Q ss_pred ---CCC--CceEEEeecCCCCC----eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcC
Q 008356 153 ---GKP--QPLTVLRACSSSEA----VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMP 206 (568)
Q Consensus 153 ---t~~--~~v~~l~~~~h~~~----VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VW 206 (568)
... .|++.++ +|... |..+.|||...||+++ +.|+.|++|
T Consensus 684 Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsA------------GAd~tirlf 732 (733)
T KOG0650|consen 684 DLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSA------------GADGTIRLF 732 (733)
T ss_pred hhhcCCceEeeeecc--CceeecccceEeecccCCCceEEec------------CCCceEEee
Confidence 221 2345555 66554 8889999977665554 558999988
No 204
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.3e-09 Score=118.22 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=122.6
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~ 75 (568)
.|+|||++|+..+.+ ..|++||+.+++...... ..+.+....|+|+|+.++++...+| .|++||+.++. ..
T Consensus 205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~--~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~--~~ 280 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN--FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ--LS 280 (430)
T ss_pred eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC--CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC--eE
Confidence 489999999877643 369999998886543222 2334456899999996666776666 58888998776 44
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGL-D--KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~-D--GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VW 149 (568)
.+..+........|+||++.|+..+. + ..|+++|+.+++...............|+|+|++|+....+ + .|.+|
T Consensus 281 ~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 281 RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 55566666777899999998876654 3 36888898887754443223334567899999999887653 3 58889
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
|+.++. .+.+.. ........|+|+|++++....
T Consensus 361 dl~tg~--~~~lt~---~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 361 DLQRGS--VRILTD---TSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred ECCCCC--EEEccC---CCCCCCceECCCCCEEEEEEe
Confidence 998763 233331 122335689999888776533
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=130.49 Aligned_cols=169 Identities=19% Similarity=0.233 Sum_probs=129.3
Q ss_pred eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 008356 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLY 106 (568)
Q Consensus 29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~ 106 (568)
..++.+ |.+.|+|++|+.+|. +|++|++|-.+.|||.-..+.....-.+|...|.++.|-| +.+++++|..|..|+
T Consensus 43 E~eL~G-H~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTG-HTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhcc-ccceecceeecCCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345666 888999999999998 9999999999999999877766666789999999999999 677889999999999
Q ss_pred EEECCCC----------ceeeEe-ecCCCeEEEEEecCC-CEEEEEEcCCeEEEEECCCCCCceE-------EEeecCCC
Q 008356 107 TYDPGSR----------RPSSCI-TYEAPFSSLAFIDDD-WILTAGTSNGRVVFYDIRGKPQPLT-------VLRACSSS 167 (568)
Q Consensus 107 IWDlrt~----------~~v~~~-~h~~~ItsLafsPdg-~~LasGs~DG~V~VWDlrt~~~~v~-------~l~~~~h~ 167 (568)
++|+... .....+ .|...|..++-.|++ +.+.++++||+|+-||+|....+.. .......-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999741 122223 477889999999987 8999999999999999997432111 11111122
Q ss_pred CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 168 EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 168 ~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
-...++..+|. ...+|+.|+.|-..++||.|.
T Consensus 201 ielk~ltisp~-----------rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 201 IELKCLTISPS-----------RPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred heeeeeeecCC-----------CCceEEecCCCchhhhhhhhh
Confidence 23566777775 334555566699999999654
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.23 E-value=1.1e-11 Score=137.47 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=140.7
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|...|.+|++|+.|..|+||.++++.++..+.+ |.+.|++++.+.+.- ++++++.|..|++|.+..+.+ +..+.+|+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~p-vsvLrght 274 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAP-VSVLRGHT 274 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhh-hhhhcccCceEEEEecCCCch-HHHHhccc
Confidence 567799999999999999999999999999998 777889999998775 789999999999999998874 78899999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-----eec--------------------------CCCeEEEEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-----ITY--------------------------EAPFSSLAF 130 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-----~~h--------------------------~~~ItsLaf 130 (568)
+.|++++|+|-. +.+.||++++||.+-.-.+.. +.. ...+.+++|
T Consensus 275 gavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~ 350 (1113)
T KOG0644|consen 275 GAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW 350 (1113)
T ss_pred cceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh
Confidence 999999999944 778999999999871110000 001 112333444
Q ss_pred ecCCCEEE-----------EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecC
Q 008356 131 IDDDWILT-----------AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAV 199 (568)
Q Consensus 131 sPdg~~La-----------sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~ 199 (568)
..+.-.++ ++-.+..+.+|++-.+ +....+. +|...+..+.+||-.. .+..+++.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~--ghsd~~yvLd~Hpfn~-----------ri~msag~ 416 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLM--GHSDEVYVLDVHPFNP-----------RIAMSAGY 416 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhc--ccccceeeeeecCCCc-----------HhhhhccC
Confidence 43332333 3334556777887776 3334444 7889999999999643 34455566
Q ss_pred CCcEEcCCCCCCCcc
Q 008356 200 GDSILMPDPLPSVTT 214 (568)
Q Consensus 200 Dg~V~VWDlr~~~~~ 214 (568)
||...|||+-...+.
T Consensus 417 dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPI 431 (1113)
T ss_pred CCceEeeecccCCcc
Confidence 888888888654443
No 207
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.1e-09 Score=117.75 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=118.1
Q ss_pred CccCCCCEEEEEECC-C--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASISLS-G--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs~D-G--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~ 75 (568)
.|+|||++|+....+ + .|++||+.+++...... .........|+|+|+.++++...+|. |++||+.+++ ..
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~--~~ 299 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA--LT 299 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC--eE
Confidence 489999999876543 3 58899998876533221 12233467999999977777777775 7777887765 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGL-DK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~-DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VW 149 (568)
.+..+...+....|+||++.|+..+. ++ .|+++|+.+++..............+|+|||++|+..+. ++ .|.++
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEE
Confidence 55566666788999999998876653 33 578888888775544323333455789999999888655 33 46667
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
|+.++. ...+.. . .......|+|+|+.|+..
T Consensus 380 dl~~g~--~~~lt~--~-~~d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 380 DLETGA--MQVLTS--T-RLDESPSVAPNGTMVIYS 410 (448)
T ss_pred ECCCCC--eEEccC--C-CCCCCceECCCCCEEEEE
Confidence 877663 233321 1 122345799998877655
No 208
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.21 E-value=4.2e-10 Score=124.97 Aligned_cols=198 Identities=17% Similarity=0.170 Sum_probs=140.3
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCcee
Q 008356 2 YNCKD-EHLASISLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPKV 74 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~v 74 (568)
|+|.. .+|+.|..+|.|.+||+..+.. +......|.+.+..+.|..+.. +-|++++.||.|..|+++.-..+.
T Consensus 250 f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~ 329 (555)
T KOG1587|consen 250 FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPV 329 (555)
T ss_pred eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccch
Confidence 56644 5677788899999999986654 3334455788899999976543 238888889999999986433211
Q ss_pred E----Eec-------cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC---CCc-----ee-eEeecCCCeEEEEEecC
Q 008356 75 S----WLK-------QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG---SRR-----PS-SCITYEAPFSSLAFIDD 133 (568)
Q Consensus 75 ~----~l~-------~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlr---t~~-----~v-~~~~h~~~ItsLafsPd 133 (568)
. ... .....+++++|.+ +.+.++.|+++|.|..-+.. ... .. ....|.++|.++.++|=
T Consensus 330 e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF 409 (555)
T KOG1587|consen 330 EGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF 409 (555)
T ss_pred hhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC
Confidence 1 011 1234689999999 88899999999998874432 222 11 22258899999999996
Q ss_pred CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 134 DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 134 g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+..++..+.|-.|+||.......|+..+. .+...|++++|+|- ...+++++..||.|.+||++...
T Consensus 410 ~~k~fls~gDW~vriWs~~~~~~Pl~~~~--~~~~~v~~vaWSpt-----------rpavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 410 YPKNFLSVGDWTVRIWSEDVIASPLLSLD--SSPDYVTDVAWSPT-----------RPAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred ccceeeeeccceeEeccccCCCCcchhhh--hccceeeeeEEcCc-----------CceEEEEEcCCCceehhhhhccc
Confidence 55444444499999999885445555554 56777999999995 33456667779999999997644
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.21 E-value=6.8e-11 Score=120.07 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=109.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
+|+|+|++||+...- .+.|-|.++-+....+.. -+.|.-+.|..+..++|.....|+.|.+|++...+- ...+...
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIdeg 90 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDEG 90 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEeccC
Confidence 489999999999766 788889887765544432 233455899999988888888999999999987763 4556777
Q ss_pred CCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc
Q 008356 81 SAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 81 ~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~ 142 (568)
...+..+.|+|||++|+ +...|-.|.+|.+.+.+....--.+..+..++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeec
Confidence 78899999999997665 555788999999998877665545556789999999999988765
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=2.7e-09 Score=108.33 Aligned_cols=178 Identities=11% Similarity=0.155 Sum_probs=129.6
Q ss_pred CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC--CCeEEEEEcCCC
Q 008356 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--APTAGISFSSDD 93 (568)
Q Consensus 16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~--~~VtslafsPdg 93 (568)
++|.|||=...+++.++. ....|.+|++.++ .|++. ..+.|+||....+-.+++.+.... ..+.+++-..+.
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 479999966777777776 5678899999876 35544 457899999975544455544433 233333322244
Q ss_pred CEEEEEe-CCCeEEEEECCCCce---eeEeecCCCeEEEEEecCCCEEEEEEcCCe-EEEEECCCCCCceEEEeecCCCC
Q 008356 94 KIIASVG-LDKKLYTYDPGSRRP---SSCITYEAPFSSLAFIDDDWILTAGTSNGR-VVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 94 ~~LaSgs-~DGtV~IWDlrt~~~---v~~~~h~~~ItsLafsPdg~~LasGs~DG~-V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
.+|+.-+ .-|.|.|-|+...+. ..+..|+..|.|++++-+|..+|+++..|+ |+|||.+++.. +..++.-....
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVDRA 227 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCchh
Confidence 4454433 568999999987555 555589999999999999999999999998 89999999854 44454334557
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
.|.+++|+|+..+|++. +..|+|.||.++...
T Consensus 228 ~iy~iaFSp~~s~Lavs------------SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVS------------SDKGTLHIFSLRDTE 259 (346)
T ss_pred eEEEEEeCCCccEEEEE------------cCCCeEEEEEeecCC
Confidence 89999999987776665 558999999887644
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=3.3e-10 Score=123.34 Aligned_cols=169 Identities=14% Similarity=0.140 Sum_probs=117.6
Q ss_pred CccCCCCEEEEEE-CCCcEEE--EECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASIS-LSGDLIL--HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs-~DG~V~V--WDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
+|+|||++|+.+. .+|.+.| ||+.+++. ..+.. +...+....|+|+|+.+++++..+|...||+++........+
T Consensus 254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 4899999988765 6776555 46655554 34443 445567799999999666666678888888875332223333
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC-CCC
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG-KPQ 156 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt-~~~ 156 (568)
.+.. .++.|+|++++|+.++.++ +.+||+.+++....... .....+.|+|+|++|+.++.++.+.+|++.. ...
T Consensus 332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred -cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 3433 4678999999998888765 56699998876543322 2345688999999999999999888777532 112
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspd 178 (568)
....+. .|.+.+..++|+|-
T Consensus 407 ~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEcc--CCCCCCCCcccCCC
Confidence 334444 67788889999983
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.19 E-value=2.4e-10 Score=115.82 Aligned_cols=158 Identities=10% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-C
Q 008356 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-R 113 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~ 113 (568)
.+.|+|.+|+++.. .++.+-.+..|.||...+.. ...+.+..|...|++|+|+|..+.|++|+.|+.-++|.... +
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 46899999999987 78888999999999987655 45788999999999999999999999999999999999844 3
Q ss_pred c--e-eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEccCCCeEEEeccCC
Q 008356 114 R--P-SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQRAKPVFIDETTCK 189 (568)
Q Consensus 114 ~--~-v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafspdg~~Las~s~ss 189 (568)
+ + +..+.+....+++.|+|.++.+|+|+.-..|.||-.+....-. .......+...|++++|+|++-.++.
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa----- 163 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA----- 163 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc-----
Confidence 2 2 2334789999999999999999999999999999988754310 00111246788999999997554444
Q ss_pred CCeEEEEecCCCcEEcCC
Q 008356 190 AETALLGGAVGDSILMPD 207 (568)
Q Consensus 190 d~~~Lls~s~Dg~V~VWD 207 (568)
++.|+.++||.
T Consensus 164 -------Gs~D~k~rVfS 174 (361)
T KOG1523|consen 164 -------GSTDGKCRVFS 174 (361)
T ss_pred -------cccCcceeEEE
Confidence 45577777764
No 213
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=115.43 Aligned_cols=143 Identities=21% Similarity=0.378 Sum_probs=112.7
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeC---------CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--Ccee-E
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKD---------PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKV-S 75 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~---------~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~--~~~v-~ 75 (568)
+|++|..+|.|.+||+.++..+..++. .|.+.|.++.|.+.-. .=++|+.+..+.+|.++.. ..++ .
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccc
Confidence 456677899999999998754433321 3677788899886543 3467777888999998543 2221 1
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
.+.-..-.|..+..-||++.+++++.|+.|++|..++.+++.++ .|.+.|++++|+|+..++|+++.|++|.+|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 12222334888999999999999999999999999999999888 58899999999999999999999999999986
No 214
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.16 E-value=8.1e-11 Score=123.91 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=162.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|-|..-+|++++..|.+...|+.+|+.+..+.. ..+.+..++-+|-+. ++-+|..+|+|.+|.-...++ +..+..|.
T Consensus 217 FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~skeP-LvKiLcH~ 293 (545)
T KOG1272|consen 217 FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKEP-LVKILCHR 293 (545)
T ss_pred ccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccc-eEEEcCCCceEEecCCCCcch-HHHHHhcC
Confidence 445556788899999999999999999998875 456778899999887 899999999999999988876 44567799
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC-CC-CCceE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR-GK-PQPLT 159 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr-t~-~~~v~ 159 (568)
++|.+|++.++|++++|.+.|..|+|||+|.-..+..+....+...++++..| +++.+....|.||.=. .. .....
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~ 371 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET 371 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc
Confidence 99999999999999999999999999999998766666556677888888654 3444455679999422 21 11111
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcc
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTT 214 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~ 214 (568)
.+-.+.-.+.|..+.|.|-...|-.+....-..+|+-|+.+-..--|...||.++
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetr 426 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETR 426 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhh
Confidence 1111223458999999998888888766666788999998888888888888753
No 215
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=5.7e-09 Score=102.68 Aligned_cols=144 Identities=16% Similarity=0.274 Sum_probs=112.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe-----
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL----- 77 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l----- 77 (568)
.|..+-|+.++.|+.++.||+++|+..+++++ |.+.|.++.-..... .+++|++||+++|||.++.+. +..+
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~ 199 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKH-VSMIEPYKN 199 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc-ceeecCCCccEEEEeccccce-eEEeccccC
Confidence 35666677777999999999999999999998 778888887733333 499999999999999988774 2222
Q ss_pred ----ccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 78 ----KQH-SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 78 ----~~H-~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
+.| ...|.+++.+ ..++++|+ ...+.+|.++..++..++....++..+.|.. ..++++++.+.|.-|.+.
T Consensus 200 ~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 200 PNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred hhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeec
Confidence 222 2346666654 56666655 5569999999999999999999999999975 478888888889999887
Q ss_pred CC
Q 008356 153 GK 154 (568)
Q Consensus 153 t~ 154 (568)
..
T Consensus 275 Gv 276 (325)
T KOG0649|consen 275 GV 276 (325)
T ss_pred cE
Confidence 64
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.14 E-value=7.8e-09 Score=104.99 Aligned_cols=147 Identities=14% Similarity=0.235 Sum_probs=111.9
Q ss_pred CCEEEEEECCCcEEEEECC-CCceeEEeeCCC-CCcEEEEEEccCCCeEEE-EEeCCCeEEEEECCCCCc-eeEEeccCC
Q 008356 6 DEHLASISLSGDLILHNLA-SGAKAAELKDPN-EQVLRVLDYSRNSRHLLV-TAGDDGTLHLWDTTGRSP-KVSWLKQHS 81 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLa-Tgs~DGtV~VWDl~t~~~-~v~~l~~H~ 81 (568)
.++|++. ..+.|+||... +.+.++.+.... ...+.+++-..+.. +|+ =|-.-|.|+|-|+..... .-..+.+|.
T Consensus 104 r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~ 181 (346)
T KOG2111|consen 104 RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHD 181 (346)
T ss_pred CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence 3455555 36789999986 556666554322 22233333222222 343 355679999999976553 246789999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 82 APTAGISFSSDDKIIASVGLDKK-LYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGt-V~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
..|.|++.+-+|..+|+++..|+ |||||.+++..+..+. ....|.|++|+|+..+|++.+..|+|+||.++..
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999997 7899999999998884 4567999999999999999999999999999864
No 217
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=1.7e-09 Score=123.08 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=146.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEE---EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRV---LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~---Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
-+...++.+..++.+.+||...+.....+.........+ +-++++. -++++|+--+.|.+|+.......+ .+.+|
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~-~l~GH 174 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI-RLKGH 174 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc-eeccc
Confidence 356788889999999999998877776666432222222 2233333 378889999999999997554333 68999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~--~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
.+.|.++.|+-|+++++++++|+.+++|++.+.+... .++|..++..++|.|+ .+++++.|.+.++|+.+... +
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l 250 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--L 250 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--e
Confidence 9999999999999999999999999999999987654 4589999999999998 99999999999999776542 2
Q ss_pred EEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 159 TVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 159 ~~l~~~~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
..+. +|. ..|..++.++ +..++++++.|+.+++||+....
T Consensus 251 ~~y~--~h~g~~iw~~~~~~------------~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 251 EVYD--EHSGKGIWKIAVPI------------GVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred hhhh--hhhhcceeEEEEcC------------CceEEEeeccCcchhhhhhhccc
Confidence 3343 443 4588888777 45667777889999999986543
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=120.32 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=82.4
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v 116 (568)
.+.|+.++|++||+ +|++.++||.++|||..+.+ ++..++..-+...|++|+|||++|++|++|.-|.||.+...+.+
T Consensus 290 ~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCc-eEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 34678899999998 79999999999999998876 34555666778999999999999999999999999999998887
Q ss_pred eEe-ecCCCeEEEEEec
Q 008356 117 SCI-TYEAPFSSLAFID 132 (568)
Q Consensus 117 ~~~-~h~~~ItsLafsP 132 (568)
..- +|+.+|..++|+|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 664 7999999999984
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=9.7e-10 Score=113.93 Aligned_cols=167 Identities=13% Similarity=0.136 Sum_probs=134.1
Q ss_pred CEEEEEECC--CcEEEEECCCCceeEEeeCCCC--------CcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCCceeE
Q 008356 7 EHLASISLS--GDLILHNLASGAKAAELKDPNE--------QVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 7 ~~LasGs~D--G~V~VWDl~tg~~v~~l~~~h~--------~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~~~v~ 75 (568)
..+++||.. ..+.|||+++.+.+.+-++... -.++++.|.+.. .+.|+++..-+.|++||.+.+..++.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 356679988 8899999998866555443222 235677787651 33799999999999999998877788
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.+.--..+|+++...|+++.|++|..-+.+..||++.++.... + +..+.|+++..+|...+|++++-|+.|+|||+++
T Consensus 242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 8888889999999999999999999999999999999988766 3 5788999999999999999999999999999998
Q ss_pred CCCceEEEeecCCCCCeeEEEEcc
Q 008356 154 KPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 154 ~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
.+...+++ -...++++.+.+
T Consensus 322 rkll~kvY----vKs~lt~il~~~ 341 (412)
T KOG3881|consen 322 RKLLHKVY----VKSRLTFILLRD 341 (412)
T ss_pred chhhhhhh----hhccccEEEecC
Confidence 64332322 234566666655
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.13 E-value=2.9e-09 Score=122.61 Aligned_cols=204 Identities=12% Similarity=0.135 Sum_probs=141.6
Q ss_pred CCCCEEEEEECCCcEEEEECCCC--c-----eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc-e--
Q 008356 4 CKDEHLASISLSGDLILHNLASG--A-----KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-K-- 73 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg--~-----~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-~-- 73 (568)
+++.++++|+.||+|++||+..- . ....+.. ....+.++..++.+. .+|.++.||.|++.+++.... .
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~ 1136 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRV 1136 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccce
Confidence 45589999999999999998531 1 1122221 456788899999887 688889999999999976221 1
Q ss_pred ---eEEeccC--CCCeEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCceeeEee---cCCCeEEEEEecCCCEEEEEEcC
Q 008356 74 ---VSWLKQH--SAPTAGISFSS-DDK-IIASVGLDKKLYTYDPGSRRPSSCIT---YEAPFSSLAFIDDDWILTAGTSN 143 (568)
Q Consensus 74 ---v~~l~~H--~~~VtslafsP-dg~-~LaSgs~DGtV~IWDlrt~~~v~~~~---h~~~ItsLafsPdg~~LasGs~D 143 (568)
.+....+ ...|..-+|.. ... .++.+..-+.|..||++.......++ ..+.|++++.+|.++++++|+..
T Consensus 1137 ~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~ 1216 (1431)
T KOG1240|consen 1137 ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR 1216 (1431)
T ss_pred eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC
Confidence 1112222 22344444544 334 78888889999999999877665553 46789999999999999999999
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec-CCCcEEcCCCCCCCccccccc
Q 008356 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA-VGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s-~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
|.+.+||+|-+ .++...+ +++..+++.+..+|-.+ .....+.++. ..+.|.+|++........+..
T Consensus 1217 G~l~lWDLRF~-~~i~sw~-~P~~~~i~~v~~~~~~~--------~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1217 GQLVLWDLRFR-VPILSWE-HPARAPIRHVWLCPTYP--------QESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ceEEEEEeecC-ceeeccc-CcccCCcceEEeeccCC--------CCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 99999999976 3444443 35668899888887422 1122333333 578899999877655444443
No 221
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=5.2e-09 Score=113.28 Aligned_cols=199 Identities=16% Similarity=0.089 Sum_probs=151.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCC--CCCcEEEEEEcc-------------------CCCeEEEEEeCCCe
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDP--NEQVLRVLDYSR-------------------NSRHLLVTAGDDGT 61 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafsp-------------------dg~~lLaTgs~DGt 61 (568)
.|-..++|....||.++|||...++...+|... -.+...+..|.- .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 455689999999999999999999887777542 244555566631 12336788899999
Q ss_pred EEEEECCCCCceeEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEE
Q 008356 62 LHLWDTTGRSPKVSWL-KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTA 139 (568)
Q Consensus 62 V~VWDl~t~~~~v~~l-~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~Las 139 (568)
|.+|++..++...... ..|.+.|+++.++.+-..|.+++.|..+.+|+...++.++.. .....+.+++++||+.+|++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999887443333 579999999999999999999999999999999999888877 45667899999999999999
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 140 Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
++ +.|++||+++.+ .+..+. +|.++|+++.|--+ .. ...+..+|-+...++.+.+|-+..-.
T Consensus 162 as--~~ik~~~~~~ke-vv~~ft--gh~s~v~t~~f~~~-----~~-g~~G~~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKE-VVITFT--GHGSPVRTLSFTTL-----ID-GIIGKYVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred cc--ceEEEEEccCce-EEEEec--CCCcceEEEEEEEe-----cc-ccccceeeeccccccceeEEEEEccc
Confidence 87 589999999984 334444 89999999999765 00 01122333334457778888766533
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=3e-09 Score=115.90 Aligned_cols=168 Identities=16% Similarity=0.197 Sum_probs=115.6
Q ss_pred CccCCCCEEEEE-ECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCCceeE
Q 008356 1 MYNCKDEHLASI-SLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasG-s~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~~~v~ 75 (568)
+|+|||++|+.. ..+| .|++||+.+++...... +...+....|+|+++.++++...++...|| |+.++. ..
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--~~ 324 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--PQ 324 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC--eE
Confidence 489999988865 4455 58999998876544333 233556789999998655555555554444 666654 33
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCe---EEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGR---VVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~---V~VW 149 (568)
.+..+...+.+..|+||+++|+..+.+ ..|++||+.+++... +..........|+|||++|+..+.++. +.++
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 444444556788999999999877644 368899998886543 322223456789999999999887764 7778
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
++.... ...+. .|.+.+...+|+|
T Consensus 404 ~~~G~~--~~~l~--~~~~~~~~p~Wsp 427 (429)
T PRK03629 404 STDGRF--KARLP--ATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCC--eEECc--cCCCCcCCcccCC
Confidence 886552 23343 5777888899987
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.9e-08 Score=109.73 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=115.1
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~ 94 (568)
.|.++|.. +.....+.. +...+...+|+|+|+.++++... +..|++||+.++. ...+..+.+.+.+..|+||++
T Consensus 183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence 68888874 444455554 55678889999999855454432 4689999998876 344556667788999999998
Q ss_pred EEE-EEeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356 95 IIA-SVGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 95 ~La-Sgs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
.|+ +.+.++ .|++||+.+++......+........|+|||+.|+..+. +| .|++||+.+.. . +.+. .+..
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~-~~lt--~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-P-RRIS--FGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-e-EEee--cCCC
Confidence 875 445555 488889998876555455556678999999999888764 33 68888887653 2 3332 2345
Q ss_pred CeeEEEEccCCCeEEEe
Q 008356 169 AVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (568)
.+....|+|+|++|+..
T Consensus 335 ~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFT 351 (435)
T ss_pred cccCeEECCCCCEEEEE
Confidence 56778999999888765
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4.7e-10 Score=117.13 Aligned_cols=158 Identities=22% Similarity=0.272 Sum_probs=116.7
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee
Q 008356 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (568)
Q Consensus 41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~ 120 (568)
.+++|+.+|. .+++++.||++|||+...... +.....|...|.+++|+||+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t-~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT-ILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh-hhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 5789999998 899999999999999866653 55677888999999999999999999999 89999999997766553
Q ss_pred ---cCCCeEEEEEecCC---CE--EEEEEcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 121 ---YEAPFSSLAFIDDD---WI--LTAGTSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 121 ---h~~~ItsLafsPdg---~~--LasGs~DG~V~VWDlrt~~~--~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
.+..+..|.|..|+ .+ ++.-..-+.|+.||+..... ..+..+.......|.+++.+.+|++++.+
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG----- 299 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG----- 299 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-----
Confidence 44557788888876 22 23333445677777654322 11111111234579999999988887776
Q ss_pred CeEEEEecCCCcEEcCCCCCCCc
Q 008356 191 ETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
++||.|.|++......
T Consensus 300 -------T~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 300 -------TMDGSVAIYDAKSLQR 315 (398)
T ss_pred -------ccCCcEEEEEeceeee
Confidence 4588888888766543
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=6.8e-09 Score=111.96 Aligned_cols=196 Identities=17% Similarity=0.227 Sum_probs=135.2
Q ss_pred ccCCCCEE-EEEECCCcEEEEECCCCceeEE----------------------ee------CC------CC----CcEEE
Q 008356 2 YNCKDEHL-ASISLSGDLILHNLASGAKAAE----------------------LK------DP------NE----QVLRV 42 (568)
Q Consensus 2 fSpdG~~L-asGs~DG~V~VWDl~tg~~v~~----------------------l~------~~------h~----~~Vs~ 42 (568)
.+|||+|+ |+|...-.|++||+.+-.+..+ ++ -| +. ..-++
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRD 138 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRD 138 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCcc
Confidence 47999986 5566788999999875432100 00 00 00 01123
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec-
Q 008356 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY- 121 (568)
Q Consensus 43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h- 121 (568)
++++.-... |+.++....|+-+++..+.- +.-+....+.+++|..++-..+|++|+.+|.|..||.++...+..+..
T Consensus 139 m~y~~~scD-ly~~gsg~evYRlNLEqGrf-L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 139 MKYHKPSCD-LYLVGSGSEVYRLNLEQGRF-LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccCCCcc-EEEeecCcceEEEEcccccc-ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 444433332 44555556677778877652 445556668899999999999999999999999999998877666532
Q ss_pred ------CC-----CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 122 ------EA-----PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 122 ------~~-----~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
.+ .|+++.|+.+|-.+++|+.+|.|.|||+|.... + .+..++..-+|..+.|.+. ++
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p-l-~~kdh~~e~pi~~l~~~~~----------~~ 284 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP-L-LVKDHGYELPIKKLDWQDT----------DQ 284 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc-e-eecccCCccceeeeccccc----------CC
Confidence 22 399999999999999999999999999999853 2 2343455678999999874 23
Q ss_pred CeEEEEecCCCcEEcCCCCCCC
Q 008356 191 ETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+..+++.. ...++|||-....
T Consensus 285 q~~v~S~D-k~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 285 QNKVVSMD-KRILKIWDECTGK 305 (703)
T ss_pred CceEEecc-hHHhhhcccccCC
Confidence 33444433 6789999976544
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.05 E-value=7.8e-09 Score=112.76 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=135.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCC---------------------------------------CcEE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNE---------------------------------------QVLR 41 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~---------------------------------------~~Vs 41 (568)
+|+.||+++|+|+.|..|.||+..-. ..++-.|. ..|.
T Consensus 60 Ays~dGkrFASG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~ 136 (1081)
T KOG1538|consen 60 AYAKDGKRFASGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII 136 (1081)
T ss_pred EEccCCceeccCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence 58999999999999999999985311 11111122 2355
Q ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe--ccCCCCeEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCc
Q 008356 42 VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL--KQHSAPTAGISFSSDD-----KIIASVGLDKKLYTYDPGSRR 114 (568)
Q Consensus 42 ~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l--~~H~~~VtslafsPdg-----~~LaSgs~DGtV~IWDlrt~~ 114 (568)
+++|..||+ +|+.|-.||+|.|-+-.+.+ .+..- -+...+|.+++|+|.. ..+++.....++.+|.+....
T Consensus 137 ~CsWtnDGq-ylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 137 CCSWTNDGQ-YLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred EeeecCCCc-EEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 667777887 89999999999998765443 23322 3467899999999832 577888888888888876543
Q ss_pred eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEE
Q 008356 115 PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETAL 194 (568)
Q Consensus 115 ~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~L 194 (568)
.-..-...-...|+.+.++|.+++.|+.|+.+++|--++- .+-.+. ....+|+.++.+|++++.+.+
T Consensus 215 Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg--~~D~WIWtV~~~PNsQ~v~~G--------- 281 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVG--EQDSWIWTVQAKPNSQYVVVG--------- 281 (1081)
T ss_pred ecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeecc--ccceeEEEEEEccCCceEEEE---------
Confidence 3223344556779999999999999999999999975542 122222 345789999999987665544
Q ss_pred EEecCCCcEEcCCCC
Q 008356 195 LGGAVGDSILMPDPL 209 (568)
Q Consensus 195 ls~s~Dg~V~VWDlr 209 (568)
+.||+|..|++-
T Consensus 282 ---CqDGTiACyNl~ 293 (1081)
T KOG1538|consen 282 ---CQDGTIACYNLI 293 (1081)
T ss_pred ---EccCeeehhhhH
Confidence 669999888874
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1e-08 Score=111.76 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=113.0
Q ss_pred CccCCCCEEEE-EECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356 1 MYNCKDEHLAS-ISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~Las-Gs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~ 75 (568)
+|+|||+.|+. .+.+| .|++||+.+++.. .+.. +......++|+|+++.++++...+|. |+++|+.+++ ..
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~~ 329 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--AE 329 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--eE
Confidence 48999998764 45555 5999999887653 3443 33344568999999865555555665 6666776655 23
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW 149 (568)
.+..+......++|+|++++|+....++ .|.+||+.+++.. .+.+........|+|||++|+....+ +.|.++
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 3333344456789999999998775443 6999999887755 44344345667999999988877653 458888
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
++.... ...+. .+.+.+...+|+|
T Consensus 409 ~~~g~~--~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 409 STDGRV--RQRLV--SADGEVREPAWSP 432 (433)
T ss_pred ECCCCc--eEEcc--cCCCCCCCCccCC
Confidence 886542 23333 3446677777876
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.03 E-value=4.9e-09 Score=116.54 Aligned_cols=188 Identities=13% Similarity=0.175 Sum_probs=134.9
Q ss_pred CEEEEEECCCcEEEEECCCCce------eEEee-----CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---
Q 008356 7 EHLASISLSGDLILHNLASGAK------AAELK-----DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--- 72 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~------v~~l~-----~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--- 72 (568)
.-+++++.||.|..|+++.-.. ..... ......+.+++|.+...+.|+.|+++|.|.--+-.+...
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 5588899999999998753221 10111 012345778999999888999999999998844332221
Q ss_pred ----eeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCceeeEe-ecCCCeEEEEEecC-CCEEEEEEcCC
Q 008356 73 ----KVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPG-SRRPSSCI-TYEAPFSSLAFIDD-DWILTAGTSNG 144 (568)
Q Consensus 73 ----~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlr-t~~~v~~~-~h~~~ItsLafsPd-g~~LasGs~DG 144 (568)
.+.....|.++|+++.++| ..+.+++++ |.+|+||... ...++..+ .+...+.+++|+|. ..+++++..||
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G 464 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG 464 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence 1335667899999999999 555566666 9999999987 55666555 45566999999995 46888899999
Q ss_pred eEEEEECCCCC-CceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 145 RVVFYDIRGKP-QPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 145 ~V~VWDlrt~~-~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.|.+||+.... .|..... .+....+.+.|+++|+.|+++ ...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavG------------d~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVG------------DANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEe------------cCCCcEEEEEcC
Confidence 99999998642 2333333 235667778888877766665 458999999985
No 229
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.02 E-value=3.6e-10 Score=125.56 Aligned_cols=231 Identities=13% Similarity=0.118 Sum_probs=151.7
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
++.+.+|...|+|+.|...|.+|++|++|..|+||...++.++... +|.+.|+.++.+.++.++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 3456789999999999999999999999999999999999888777 799999999999999999999999999999999
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCccc
Q 008356 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRS 232 (568)
Q Consensus 153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~ 232 (568)
.. .++.++. +|.+.|++++|+|. .+.+.||++++||.| +.++-... .+.......+..
T Consensus 263 ~~-~pvsvLr--ghtgavtaiafsP~----------------~sss~dgt~~~wd~r-~~~~~y~p--rp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 263 DG-APVSVLR--GHTGAVTAIAFSPR----------------ASSSDDGTCRIWDAR-LEPRIYVP--RPLKFTEKDLVD 320 (1113)
T ss_pred CC-chHHHHh--ccccceeeeccCcc----------------ccCCCCCceEecccc-ccccccCC--CCCCccccccee
Confidence 87 5777777 99999999999994 245669999999988 22211110 000000001100
Q ss_pred ----CCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCc-----ccccccCcC
Q 008356 233 ----GPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL-----DKLWDGHEG 303 (568)
Q Consensus 233 ----sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~-----~~~w~~~~~ 303 (568)
-..|. .........+...++..+....-+.- ++.-++. |...++++. ...|...+|
T Consensus 321 s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l~~~~~~l------------if~t~ss--d~~~~~~~ar~~~~~~vwnl~~g 385 (1113)
T KOG0644|consen 321 SILFENNGD-RFLTGSRDGEARNHEFEQLAWRSNLL------------IFVTRSS--DLSSIVVTARNDHRLCVWNLYTG 385 (1113)
T ss_pred eeecccccc-ccccccCCcccccchhhHhhhhccce------------EEEeccc--cccccceeeeeeeEeeeeecccc
Confidence 00011 00000111111111111111110000 1111222 333344322 567999999
Q ss_pred cccccccCCCCCCccc-cCCCCcccccccCCCceeeeee
Q 008356 304 AKKDHLPIDKKPSSML-FPSSSRRFPYAEDGSNEHSVFD 341 (568)
Q Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (568)
...-.+-++..++.+| ++--+.|+.-.-.-..-.-|||
T Consensus 386 ~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 386 QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 9988899999999899 7766776555544444455676
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=6.4e-09 Score=116.74 Aligned_cols=220 Identities=14% Similarity=0.130 Sum_probs=155.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCC--C-ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASISLSGDLILHNLAS--G-AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~t--g-~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
++||+++++|+|..||.|.+|.--. + ...+.+-.-|...|.++.|+++|. +|++|+..|.+.+|.+.+++ .+.+
T Consensus 212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--kqfL 288 (792)
T KOG1963|consen 212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--KQFL 288 (792)
T ss_pred EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--cccc
Confidence 4799999999999999999997322 1 222233223667889999999998 89999999999999999887 5667
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee------------cCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT------------YEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~------------h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
..-..+|..+.++||+.+.+.+..|..|.+....+......+. ..+-.+.++++|.-+.++..+..|.
T Consensus 289 PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~ 368 (792)
T KOG1963|consen 289 PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH 368 (792)
T ss_pred cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce
Confidence 8888999999999999999999999999998876554433331 1334678899997788888999999
Q ss_pred EEEEECCCCCCceEEEe--ecC------CCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 146 VVFYDIRGKPQPLTVLR--ACS------SSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~--~~~------h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
|.+||+-+.....+... ... +...++.++.+..|.++++.-...+. .......-.+++|-..+-...-.+
T Consensus 369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~--~~~~~~e~~LKFW~~n~~~kt~~L 446 (792)
T KOG1963|consen 369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDK--FNFFDGEVSLKFWQYNPNSKTFIL 446 (792)
T ss_pred EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehh--hhccCceEEEEEEEEcCCcceeEE
Confidence 99999988654433221 111 23357788888889999887322111 111122456788876554433333
Q ss_pred cccccccC
Q 008356 218 SLSTAVSG 225 (568)
Q Consensus 218 ~~s~~~~~ 225 (568)
.+....|+
T Consensus 447 ~T~I~~PH 454 (792)
T KOG1963|consen 447 NTKINNPH 454 (792)
T ss_pred EEEEecCC
Confidence 33333333
No 231
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=6.6e-08 Score=105.46 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=119.2
Q ss_pred CccCCCCEEE---EEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCC-
Q 008356 1 MYNCKDEHLA---SISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGR- 70 (568)
Q Consensus 1 afSpdG~~La---sGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~- 70 (568)
.|+|||+.++ +...+| .|++.++..++...... ..+.....+|+|||++++++...+| .+.+|++..+
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~ 268 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA--LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA 268 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec--CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC
Confidence 4899997532 333343 58888988776433322 2233445799999997666665434 3445776542
Q ss_pred -CceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-CceeeEe-ecCCCeEEEEEecCCCEEEEEEcC-
Q 008356 71 -SPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKK--LYTYDPGS-RRPSSCI-TYEAPFSSLAFIDDDWILTAGTSN- 143 (568)
Q Consensus 71 -~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGt--V~IWDlrt-~~~v~~~-~h~~~ItsLafsPdg~~LasGs~D- 143 (568)
.........+.......+|+|||+.|+..+ .+|. |+++++.. +.....+ .....+....|+|||+.|+....+
T Consensus 269 ~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 269 IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 111222223334456789999999887765 4564 55555542 2223333 344567789999999998876543
Q ss_pred --CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 144 --GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 144 --G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
..|.+||+.++.. ..+. .....+....|+|+|++|+..... .....|.++|+..
T Consensus 349 g~~~I~v~dl~~g~~--~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~---------~g~~~L~~vdl~~ 404 (428)
T PRK01029 349 GVRQICVYDLATGRD--YQLT--TSPENKESPSWAIDSLHLVYSAGN---------SNESELYLISLIT 404 (428)
T ss_pred CCcEEEEEECCCCCe--EEcc--CCCCCccceEECCCCCEEEEEECC---------CCCceEEEEECCC
Confidence 4699999987742 3332 223456789999998887654221 1245666777644
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.3e-07 Score=102.88 Aligned_cols=191 Identities=15% Similarity=0.097 Sum_probs=125.5
Q ss_pred CccCCCCE-EEEEECC---CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCcee
Q 008356 1 MYNCKDEH-LASISLS---GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKV 74 (568)
Q Consensus 1 afSpdG~~-LasGs~D---G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v 74 (568)
.|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|+|||+.++++...+ ..|+++|+.++. .
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~--~ 269 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT--L 269 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc--E
Confidence 48999985 6654433 569999998887654443 344555678999999777777655 458888887765 3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC--------
Q 008356 75 SWLKQHSAPTAGISFSSDDKIIASVGLD-K--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-------- 143 (568)
Q Consensus 75 ~~l~~H~~~VtslafsPdg~~LaSgs~D-G--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-------- 143 (568)
..+..+........|+|||+.|+..+.. + .|+++|+.+++..+....... ...|+|||+.|+.....
T Consensus 270 ~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 270 TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCC
Confidence 4454444434556899999988776633 2 688999988776544432222 24899999998877653
Q ss_pred -CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCc
Q 008356 144 -GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDS 202 (568)
Q Consensus 144 -G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~ 202 (568)
..|.+.|+.++. .+.+.. . .......|+|||+.|+......+...|..-..||.
T Consensus 348 ~~~I~v~d~~~g~--~~~LT~--~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 348 TFNLYLISTNSDY--IRRLTA--N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEECCCCC--eEECCC--C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 368888988763 233332 1 23335889999998877644444444444444443
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.98 E-value=9.5e-08 Score=102.68 Aligned_cols=177 Identities=13% Similarity=0.128 Sum_probs=117.2
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~ 94 (568)
.|.++|.. +.....+.. +...+...+|+|+++.++++...+ ..|++||+.++. ...+..+...+.+++|+|+++
T Consensus 171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCC
Confidence 58888875 333444543 444567789999999544443333 479999998775 333445666677899999998
Q ss_pred EEEEE-eCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCCCC
Q 008356 95 IIASV-GLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 95 ~LaSg-s~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
.|+.. ..++ .|++||+.+++......+........|+|+|+.|+..+.. + .|+++|+.+.+ ...+. .+..
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~--~~~~ 322 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--VRRLT--FRGG 322 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEee--cCCC
Confidence 77644 4444 6999999987665554455555678999999988876643 3 58888887653 22232 3445
Q ss_pred CeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 169 AVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 169 ~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
.+..+.|+|+|++++...... ....|.+||+..
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~---------~~~~i~~~d~~~ 355 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREG---------GGFNIAVMDLDG 355 (417)
T ss_pred CccCeEECCCCCEEEEEEccC---------CceEEEEEeCCC
Confidence 677889999988776652211 123567777654
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=5.3e-08 Score=106.05 Aligned_cols=179 Identities=9% Similarity=0.056 Sum_probs=111.4
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~ 94 (568)
.|.++|. ++.....+.. +...+...+|+|+++.++++...+ ..|++||+.+++. ..+......+.+..|+||++
T Consensus 177 ~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 177 QLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred EEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 5777776 4544444543 456677899999998544444333 4599999988763 33444445567899999999
Q ss_pred EEE-EEeCCCeEE--EEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCceEEEeecCCCCCe
Q 008356 95 IIA-SVGLDKKLY--TYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRACSSSEAV 170 (568)
Q Consensus 95 ~La-Sgs~DGtV~--IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~v~~l~~~~h~~~V 170 (568)
.|+ +.+.++... ++|+..+.......+........|+|||+.|+..+. +|...||.++........+. .+....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~g~~~ 330 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FTGSYN 330 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--cCCCCc
Confidence 886 456677644 455655554333344455667899999998887654 45666665542211122232 122334
Q ss_pred eEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 171 SSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 171 tsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
...+|+|+|++|+...... .+..|.+||+..
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~---------g~~~I~v~d~~~ 361 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVG---------GAFKLYVQDLAT 361 (427)
T ss_pred CceEECCCCCEEEEEEccC---------CcEEEEEEECCC
Confidence 5678999999887653211 123678888754
No 235
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=4.9e-09 Score=112.88 Aligned_cols=118 Identities=20% Similarity=0.329 Sum_probs=99.4
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-------CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-------SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-------~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IW 108 (568)
|.+.|+.+.|.+... .|++++.||+|++|+++.. ..++..+++|.++|.|+++.+++.++++|+.||+|+.|
T Consensus 293 ~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 667788899999887 7999999999999999321 13477899999999999999999999999999999999
Q ss_pred ECCCC------c---e-ee-EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 109 DPGSR------R---P-SS-CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 109 Dlrt~------~---~-v~-~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
++... . . .. ..+|.+.++.++++.....|++++.||+|++|+....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 66421 1 1 12 2379999999999999999999999999999998754
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=4.6e-08 Score=106.72 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=111.8
Q ss_pred CccCCCCEEEEEEC-CC--c--EEEEECCCC--ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE--ECCCCC
Q 008356 1 MYNCKDEHLASISL-SG--D--LILHNLASG--AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW--DTTGRS 71 (568)
Q Consensus 1 afSpdG~~LasGs~-DG--~--V~VWDl~tg--~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW--Dl~t~~ 71 (568)
+|+|||++|+.... +| . +.+|++..+ .....+...........+|+|||+.++++...+|...|| ++....
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence 48999999887653 23 3 344676643 122233322223345679999999666666667765555 443221
Q ss_pred ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCe
Q 008356 72 PKVSWLKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGR 145 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~ 145 (568)
.....+..+...+....|+|||++|+....+ ..|++||+.+++..........+....|+|||++|+.... ...
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence 1234455555667889999999999877643 3799999998876555444456778999999998876543 356
Q ss_pred EEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356 146 VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 146 V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd 178 (568)
|++||+.+.+ . ..+. ...+.+...+|+|.
T Consensus 397 L~~vdl~~g~-~-~~Lt--~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 397 LYLISLITKK-T-RKIV--IGSGEKRFPSWGAF 425 (428)
T ss_pred EEEEECCCCC-E-EEee--cCCCcccCceecCC
Confidence 8888988763 2 2222 23455667788874
No 237
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.96 E-value=1.9e-07 Score=100.07 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=119.2
Q ss_pred CCEEEE-EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 6 DEHLAS-ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 6 G~~Las-Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
++++++ -..+|.|.|.|..+.+.+..+.... .....+.|++|++ ++++++.||.|.++|+.+.+ .+..++... ..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~-~v~~i~~G~-~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK-VVATIKVGG-NP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS-EEEEEE-SS-EE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCC-EEEEEcCCCeEEEEECCccc-EEEEEecCC-Cc
Confidence 345544 4568999999999999999998633 3334478999999 67777899999999999888 455555544 46
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeEeec--------CCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCC
Q 008356 85 AGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSSCITY--------EAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGK 154 (568)
Q Consensus 85 tslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h--------~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~ 154 (568)
.++++++||++++++. .++.|.++|.++.+++..+.. ..++..+..+|....+++.-. .+.|.+.|....
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 8899999999988775 789999999999998887732 246778888888885655554 588999998776
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
..+.... ...........|+|+++|++.+..
T Consensus 161 ~~~~~~~--i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 161 KNLKVTT--IKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp SCEEEEE--EE--TTEEEEEE-TTSSEEEEEEG
T ss_pred cccceee--ecccccccccccCcccceeeeccc
Confidence 4332222 124456778999999988766533
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=2.3e-08 Score=107.98 Aligned_cols=170 Identities=17% Similarity=0.308 Sum_probs=129.8
Q ss_pred EEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-----eEEeccCCCC
Q 008356 9 LASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-----VSWLKQHSAP 83 (568)
Q Consensus 9 LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-----v~~l~~H~~~ 83 (568)
|+.++....|+-++++.|+.+..+.. ..+.+++|..++... +|++|+.+|.|..||.+..... ...+..|.+.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEcccccccccccc-ccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 55666677899999999998888875 557889999999886 9999999999999999765521 1112234443
Q ss_pred -----eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--CCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356 84 -----TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 84 -----VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~ 154 (568)
|+++.|..+|-.+++|..+|.|.|||++..+++..-.| .-+|..+.|.+. ++.|++. ....++|||-.++
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 99999998899999999999999999999998877755 457899999875 3445444 4467999999988
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+ +...+. ....+..+|+-|++..++++
T Consensus 305 k-~~asiE---pt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 305 K-PMASIE---PTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred C-ceeecc---ccCCcCceeeecCCceEEEe
Confidence 4 333333 44568999999875554444
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.91 E-value=1.5e-08 Score=102.01 Aligned_cols=182 Identities=17% Similarity=0.143 Sum_probs=129.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeEEec
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVSWLK 78 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~~~v~~l~ 78 (568)
|++.+..++++..+|.+.+-+....... +..+. |+-.+...+|+....+++++|++|+.+..||++- ++...+..+
T Consensus 129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred eeccCceEEEEcCCCcEEEEecceeeeeecccccc-cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 5667778888888999886554444333 35665 5566677899988888999999999999999983 333344467
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CceeeEeecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS-RRPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt-~~~v~~~~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~ 154 (568)
.|...|.+|.-+| .+.+|++|+.|..|++||.|+ ++++..-...+.|..++++|. +.+|+++..+| .+|.++...
T Consensus 208 vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 8999999999988 789999999999999999995 777777677899999999994 45566666655 566666543
Q ss_pred CCceE-EEe-ecCCCCCeeEEEEccCCCeEEEe
Q 008356 155 PQPLT-VLR-ACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 155 ~~~v~-~l~-~~~h~~~VtsLafspdg~~Las~ 185 (568)
..... .+. ...|.+-+..-.|.....++++|
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred ccchheeeeccccccceeeccccccccceeeee
Confidence 22111 111 12455555666664433344444
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=9.5e-09 Score=117.10 Aligned_cols=147 Identities=20% Similarity=0.233 Sum_probs=121.4
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~ 82 (568)
+++.-++++|..-+.|.+|+....+.-..+.+ |++.|..+.|+-+|+ ++++.++|.++++|++++.+.......+|..
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G-HeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKG-HEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecc-cCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccc
Confidence 34455788899999999999872222223554 888889999999998 8999999999999999988865557789999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
+|..++|.|+ .|++++.|-++++|+....+.. .+ .| ...|..++..++..++++++.|+.+++||+.+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999987 9999999999999976644433 33 33 456999999999999999999999999999764
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.5e-08 Score=107.63 Aligned_cols=296 Identities=17% Similarity=0.215 Sum_probs=190.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-CeEEEEEeCCCeEEEEECCCCC--ceeEEec
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-RHLLVTAGDDGTLHLWDTTGRS--PKVSWLK 78 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~ 78 (568)
|+..|..|++|+.|..|.+||+..++....+...|..-|...+|-|.. ..-+++++.||.|++=.+.... .....+.
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~ 229 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA 229 (559)
T ss_pred ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc
Confidence 788899999999999999999999998888887786666666787753 3468999999999998874332 2255677
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEe----ecCC---CeEEEEEecCC-CEEEEEEcCCeEEEE
Q 008356 79 QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEA---PFSSLAFIDDD-WILTAGTSNGRVVFY 149 (568)
Q Consensus 79 ~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~---~ItsLafsPdg-~~LasGs~DG~V~VW 149 (568)
.|.++|..++.-| ..+.|.+++.|+.|.-+|++.+.+...+ .+.. ....++.+|.. +.+++|+.|-.+++|
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 8999999999999 6778999999999999999987654433 2233 46788889854 589999999999999
Q ss_pred ECCCCCCc-----eEEEeec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccccccc
Q 008356 150 DIRGKPQP-----LTVLRAC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLS 220 (568)
Q Consensus 150 Dlrt~~~~-----v~~l~~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s 220 (568)
|.+.-... +..++.. ...-.|++++|+.++.- |++.-.|..|+++. +.......+..
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE------------lLaSYnDe~IYLF~-~~~~~G~~p~~- 375 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE------------LLASYNDEDIYLFN-KSMGDGSEPDP- 375 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccc------------eeeeecccceEEec-cccccCCCCCC-
Confidence 99853211 1111100 23346889999864322 23333477788772 11111111100
Q ss_pred ccccCCCCCcccCCCCCCccCccCCCCCCCCcccccCCCCCceeeecCCCCCCcCCcccccccccccccCCCCc---ccc
Q 008356 221 TAVSGSRPNSRSGPSAEASSLTVGGTGEETPQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDVQPITPSL---DKL 297 (568)
Q Consensus 221 ~~~~~~~sslt~sssG~~ss~~~~s~~e~tP~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv~~~~~s~---~~~ 297 (568)
..+. .+|....+.|. |.+-++| ..+.|-|=-..- +..|. |-+
T Consensus 376 ----~s~~---------------------~~~~k~vYKGH--------rN~~TVK-gVNFfGPrsEyV-vSGSDCGhIFi 420 (559)
T KOG1334|consen 376 ----SSPR---------------------EQYVKRVYKGH--------RNSRTVK-GVNFFGPRSEYV-VSGSDCGHIFI 420 (559)
T ss_pred ----Ccch---------------------hhccchhhccc--------ccccccc-eeeeccCccceE-EecCccceEEE
Confidence 0000 11111112221 2211111 122233300000 00132 789
Q ss_pred cccCcCcccccccCCCCCCccccCCCCcccccccCCCceeeeeeccCCCCc
Q 008356 298 WDGHEGAKKDHLPIDKKPSSMLFPSSSRRFPYAEDGSNEHSVFDWKSSSTS 348 (568)
Q Consensus 298 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (568)
|+.++++++..+++|+...--| -+--.+|..-...-+|-|=-|......
T Consensus 421 W~K~t~eii~~MegDr~VVNCL--EpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRHVVNCL--EPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EecchhHHHHHhhcccceEecc--CCCCCCchhhccCCccceeeecCCccc
Confidence 9999999999999998743222 223357888888888888888654433
No 242
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=7.9e-08 Score=108.14 Aligned_cols=197 Identities=13% Similarity=0.166 Sum_probs=140.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCce---eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CCceeE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAK---AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG---RSPKVS 75 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~---v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t---~~~~v~ 75 (568)
+++.|++.+.. .+..+.+|+...+.. ......+|...++|.+++|+++ ++++|..||.|.+|.--. .....+
T Consensus 168 ~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t 245 (792)
T KOG1963|consen 168 DNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCT 245 (792)
T ss_pred EcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccccce
Confidence 34555555444 455788898876441 1223335666689999999998 899999999999997533 223356
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
.+.-|...|+++.|+++|.+|++|+..+.+.+|.+.+++....-...++|..+.++||+.+.++...|+.|.+.......
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 77789999999999999999999999999999999999855544788999999999999999999999999999875432
Q ss_pred CceEEEeec---------CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 156 QPLTVLRAC---------SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 156 ~~v~~l~~~---------~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.. ..+... ...+-.+.++++|.-+.++.+ +.-+.|.+||+..-..
T Consensus 326 ~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln------------~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 326 IK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLN------------GHPGHVQFYDLYTDST 379 (792)
T ss_pred hh-hhccCccCCCccccccccccceeEEEcCCCCceeec------------CCCceEEEEeccccce
Confidence 11 111100 123445677888843333333 3356666666654443
No 243
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-08 Score=116.10 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=126.6
Q ss_pred EECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce------eEEeccCCCCeEEEEEcCCCC
Q 008356 21 HNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK------VSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 21 WDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~------v~~l~~H~~~VtslafsPdg~ 94 (568)
|++ .|..+..+.. |...+..++.++....+|++|+.||+|++||.+.-... ..........+.++.+.+.++
T Consensus 1034 W~p-~G~lVAhL~E-hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHE-HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc-cceEeehhhh-ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 554 5677777776 44555567887776449999999999999998532211 122233467899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCc--e-----eeEee--cCCC-eEEEEEec-CCC-EEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356 95 IIASVGLDKKLYTYDPGSRR--P-----SSCIT--YEAP-FSSLAFID-DDW-ILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (568)
Q Consensus 95 ~LaSgs~DGtV~IWDlrt~~--~-----v~~~~--h~~~-ItsLafsP-dg~-~LasGs~DG~V~VWDlrt~~~~v~~l~ 162 (568)
.++.++.||.|++.++...+ . .+... ..+. +..-+|.. .+. .|+.+...+.|..||+++...... ++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~-lk 1190 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR-LK 1190 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-hh
Confidence 99999999999999987621 1 11111 2222 33334433 233 788899999999999998754333 23
Q ss_pred ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356 163 ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 163 ~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
.....+.|++++.+|.+.|++.| ...|.+.+||+|=..+..+...
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviG------------ts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIG------------TSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred cCccccceeEEEecCCceEEEEe------------cCCceEEEEEeecCceeecccC
Confidence 23455789999999987766655 4588899999986665555544
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.1e-07 Score=98.17 Aligned_cols=204 Identities=13% Similarity=0.175 Sum_probs=131.8
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCC-C---c--------eeEEeeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEEC
Q 008356 2 YNCKD-EHLASISLSGDLILHNLAS-G---A--------KAAELKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDT 67 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~t-g---~--------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl 67 (568)
|-|.+ ..|++|+.. -|.+|.... . + ....++......|+.+.|++||. .+++++ .|..|.|||.
T Consensus 148 wRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt-~l~tAS~gsssi~iWdp 225 (445)
T KOG2139|consen 148 WRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGT-ILVTASFGSSSIMIWDP 225 (445)
T ss_pred eccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCC-EEeecccCcceEEEEcC
Confidence 55554 456777655 489997642 1 1 11223333346789999999998 677776 5778999999
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356 68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG-SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRV 146 (568)
Q Consensus 68 ~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr-t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V 146 (568)
+++.. +.......+.+.-+.|+||+.+|+.+.-|+..++|+.. +....+..-..+.|...+|+|+|.+|+.... |.-
T Consensus 226 dtg~~-~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 226 DTGQK-IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred CCCCc-ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 88763 22233455678999999999999999999999999544 3344444445569999999999988776553 344
Q ss_pred EEEECCCCCCceE-----------EE---ee---c----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356 147 VFYDIRGKPQPLT-----------VL---RA---C----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM 205 (568)
Q Consensus 147 ~VWDlrt~~~~v~-----------~l---~~---~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V 205 (568)
++|.+.-..++.. .+ .. . --.+.+.+++|+|.|.+|+......+...+ ....|.+
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~----~k~~i~~ 379 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLL----CKLHISR 379 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhh----hhhhhhh
Confidence 5554432111100 00 00 0 124678999999999999876332221111 1456778
Q ss_pred CCCCCCCc
Q 008356 206 PDPLPSVT 213 (568)
Q Consensus 206 WDlr~~~~ 213 (568)
||.+....
T Consensus 380 fdtr~sp~ 387 (445)
T KOG2139|consen 380 FDTRKSPP 387 (445)
T ss_pred hcccccCc
Confidence 88776443
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=4.9e-07 Score=98.19 Aligned_cols=161 Identities=11% Similarity=0.097 Sum_probs=107.4
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~ 94 (568)
.|.++|...++ ...+.. +...+....|+|+|+.++++...+ ..|++||+.+++ ...+....+.+....|+||++
T Consensus 180 ~l~~~d~~g~~-~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~~g~~~~~~~SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNFEGLNGAPAWSPDGS 255 (430)
T ss_pred EEEEECCCCCC-ceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCCCCCcCCeEECCCCC
Confidence 47777875444 344443 455677889999998655555443 369999998776 333444445566789999999
Q ss_pred EEEE-EeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 95 ~LaS-gs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
.|+. ...++ .|++||+.+++......+........|+|||+.|+..+. +| .|+++|+.++. . ..+.. ...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~-~~lt~--~~~ 331 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A-ERVTF--VGN 331 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E-EEeec--CCC
Confidence 8874 44444 689999998876554455555667899999998877664 33 57777887653 2 22221 112
Q ss_pred CeeEEEEccCCCeEEEe
Q 008356 169 AVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (568)
......|+|+|++++..
T Consensus 332 ~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 332 YNARPRLSADGKTLVMV 348 (430)
T ss_pred CccceEECCCCCEEEEE
Confidence 33457899998887765
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.85 E-value=2.7e-06 Score=90.11 Aligned_cols=197 Identities=13% Similarity=0.166 Sum_probs=127.2
Q ss_pred ccCCCCEEEEEEC-CCcEEEEECCC-CceeEE---ee---------CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356 2 YNCKDEHLASISL-SGDLILHNLAS-GAKAAE---LK---------DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (568)
Q Consensus 2 fSpdG~~LasGs~-DG~V~VWDl~t-g~~v~~---l~---------~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl 67 (568)
++|++++|+++.. +|.|.++++.. +..... +. .......+++.|+|+++.++++--....|++|++
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 5789999998874 89999999976 443222 21 1123557889999999965555555668999999
Q ss_pred CCCCcee---EE-eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCce--eeEee-------cCCCeEEEEEe
Q 008356 68 TGRSPKV---SW-LKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPG--SRRP--SSCIT-------YEAPFSSLAFI 131 (568)
Q Consensus 68 ~t~~~~v---~~-l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlr--t~~~--v~~~~-------h~~~ItsLafs 131 (568)
+.....+ .. ..........++|+|++++++... .++.|.+|++. ++.. +..+. .......|+++
T Consensus 174 ~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 174 DDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp -TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred eCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 7654211 11 223455689999999999886554 67789999988 4432 22221 11257899999
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 132 DDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 132 Pdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~-~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
|||++|++.. .++.|.+|+++.....+..+... ......+.+.++|+|++|+.+ ...++.|.+|++.
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-----------~~~s~~v~vf~~d 322 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-----------NQDSNTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-----------ETTTTEEEEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-----------ecCCCeEEEEEEe
Confidence 9999988876 46789999995432223333322 223458899999987776554 3346667777653
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=5.8e-07 Score=98.67 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK 94 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~ 94 (568)
.|.++|....+. ..+.. ....+....|+|+|+.++++...++ .|++||+.+++. ..+...........|+||++
T Consensus 199 ~l~i~d~dG~~~-~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGK 274 (448)
T ss_pred EEEEEeCCCCCc-eEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCC
Confidence 577778644433 33333 4556777899999996655555544 588889987763 22333333445789999999
Q ss_pred EEEE-EeCCC--eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc-CC--eEEEEECCCCCCceEEEeecCCCC
Q 008356 95 IIAS-VGLDK--KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS-NG--RVVFYDIRGKPQPLTVLRACSSSE 168 (568)
Q Consensus 95 ~LaS-gs~DG--tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG--~V~VWDlrt~~~~v~~l~~~~h~~ 168 (568)
.|+. ...++ .|++||+.+++......+.......+|+|||++|+..+. ++ .|+++|+.+++ ...+.. +..
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~--~g~ 350 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTF--EGE 350 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEec--CCC
Confidence 8865 45556 488889988876555455556678899999998877654 33 46777777653 232321 222
Q ss_pred CeeEEEEccCCCeEEEe
Q 008356 169 AVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 169 ~VtsLafspdg~~Las~ 185 (568)
.....+|+|+|++|+..
T Consensus 351 ~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 351 QNLGGSITPDGRSMIMV 367 (448)
T ss_pred CCcCeeECCCCCEEEEE
Confidence 33457899998887665
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.79 E-value=1.7e-06 Score=92.75 Aligned_cols=210 Identities=13% Similarity=0.125 Sum_probs=132.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc--
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-- 79 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-- 79 (568)
|++||+++++++.||.|.++|+.+++.+.+++. ......++++++|+.++++....+.|.++|..+.+. +..+..
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~ 120 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP-VKTIPTGG 120 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--E-EEEEE--E
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccc-eeeccccc
Confidence 789999999999999999999999999999985 345677999999996666666899999999988874 444332
Q ss_pred -----CCCCeEEEEEcCCCCEEEE-EeCCCeEEEEECCCCcee--eEeecCCCeEEEEEecCCCEEEEE-EcCCeEEEEE
Q 008356 80 -----HSAPTAGISFSSDDKIIAS-VGLDKKLYTYDPGSRRPS--SCITYEAPFSSLAFIDDDWILTAG-TSNGRVVFYD 150 (568)
Q Consensus 80 -----H~~~VtslafsPdg~~LaS-gs~DGtV~IWDlrt~~~v--~~~~h~~~ItsLafsPdg~~LasG-s~DG~V~VWD 150 (568)
...++..+..++....++. .-+.+.|.+.|....+.+ ..+..........|+|++++++++ ..++.|-++|
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 2346788888887775554 455689999998876544 344566778889999999987775 4677899999
Q ss_pred CCCCCCceEEEee--cCCCCCeeEEEEccC-CCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356 151 IRGKPQPLTVLRA--CSSSEAVSSLCWQRA-KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 151 lrt~~~~v~~l~~--~~h~~~VtsLafspd-g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
.++.+. +..+.. ..|..++..+- ||. |....+.+. . ...++.-....+.+||...+........
T Consensus 201 ~~~~k~-v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~--~-~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 201 TKTGKL-VALIDTGKKPHPGPGANFP-HPGFGPVWATSGL--G-YFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp TTTTEE-EEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBS--S-SSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred eccceE-EEEeecccccccccccccc-CCCcceEEeeccc--c-ceecccccCCccccchhhcCeEEEEEEC
Confidence 988643 333321 23555565553 443 233333311 1 2222222245666788887776555443
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=9.6e-08 Score=98.01 Aligned_cols=195 Identities=14% Similarity=0.191 Sum_probs=132.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCC-----------CCcEEEEEEccCCC-eEEEEEeCCCeEEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNSR-HLLVTAGDDGTLHL 64 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h-----------~~~Vs~Lafspdg~-~lLaTgs~DGtV~V 64 (568)
|...|++||+|..+|.|.+|.-+... ....++.|. .+.|..+.|.++++ ..++....|.+|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 67789999999999999999754322 222333321 34577899988753 35677789999999
Q ss_pred EECCCCCce-----------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356 65 WDTTGRSPK-----------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (568)
Q Consensus 65 WDl~t~~~~-----------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD 109 (568)
|.+...... ...-.+|.--|+++.++.|+..++++. |=.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-ceeeeecc
Confidence 998432210 112235777899999999998888765 66799999
Q ss_pred CCCCc-eeeEe---ec-----CCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCce---EEEeec----------CC
Q 008356 110 PGSRR-PSSCI---TY-----EAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPL---TVLRAC----------SS 166 (568)
Q Consensus 110 lrt~~-~v~~~---~h-----~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v---~~l~~~----------~h 166 (568)
++--. ...++ ++ ...|++..|+|. .++++..+..|.|++.|+|....+- +.+... .-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 87432 22222 22 245899999995 6788888899999999999532110 111100 11
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
-..|..+.|+++|+||++- .--+|++||+..
T Consensus 272 IsSISDvKFs~sGryilsR-------------Dyltvk~wD~nm 302 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSR-------------DYLTVKLWDLNM 302 (433)
T ss_pred hhhhhceEEccCCcEEEEe-------------ccceeEEEeccc
Confidence 2357889999999888776 137899999943
No 250
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.77 E-value=4.7e-07 Score=90.48 Aligned_cols=200 Identities=16% Similarity=0.134 Sum_probs=134.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
+..+||.||..|...+|.+.+.+....+-..+...|.-+.=.-+...-+..++.|.++++.++............. -.+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~-~~~ 161 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN-LTQ 161 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-cce
Confidence 3457899999999999999866543333222322222111111222246778899999999987665322221111 238
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eeeEe--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEE
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRR--PSSCI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTV 160 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~--~v~~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~ 160 (568)
+.+.+++|++++++.+....|..|.+.... .+.+. ...+.-.+..|+.....+|++..||.+.|||+|....+...
T Consensus 162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 899999999999999999999999987532 22211 34455668889999999999999999999999987555443
Q ss_pred Ee--ecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccc
Q 008356 161 LR--ACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTS 215 (568)
Q Consensus 161 l~--~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~ 215 (568)
.. ...|.+.++.+.|++-|. .+.++++ -.-+.+.+-|+|.+....
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~---------lDLLf~s-Ehfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGL---------LDLLFIS-EHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred hcccCCCCCCceEEEEecCCCc---------ceEEEEe-cCcceEEEEEcccCceee
Confidence 32 235899999999998432 2223333 336778888888766433
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.75 E-value=2.6e-08 Score=118.29 Aligned_cols=185 Identities=14% Similarity=0.229 Sum_probs=144.5
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA 82 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~ 82 (568)
+|..-+-++|+.||.|++|....++.+..++......|+.+.|+.+|+ -+..+..||.+.+|.+... .....+.|..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~pk--~~~s~qchnk 2293 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASPK--PYTSWQCHNK 2293 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCC-ceeeeccCCceeecccCCc--ceeccccCCc
Confidence 456677899999999999999988888887765557888899999998 6888899999999998733 3667788998
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceee--EeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSS--CITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs---~DGtV~IWDlrt~~~v~--~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
...++.|-. ..+++++ .++.+.+||..-..... ...|.+..+++++.|.-+.|++|+.+|.|+|||++..+ .
T Consensus 2294 ~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq-l 2370 (2439)
T KOG1064|consen 2294 ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ-L 2370 (2439)
T ss_pred cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH-H
Confidence 899999984 6677765 56789999976432222 24799999999999999999999999999999999863 2
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccc
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~ 217 (568)
...+. . ++ .+.+++.++..|.++||++..+.-..++
T Consensus 2371 ~h~~~-------~----~~-------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2371 RHTFQ-------A----LD-------------TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred HHHhh-------h----hh-------------hhheeeccCcccceEEEEccccchhhcC
Confidence 22222 1 22 2345677777999999999877544443
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.75 E-value=6.6e-06 Score=87.13 Aligned_cols=198 Identities=14% Similarity=0.125 Sum_probs=126.2
Q ss_pred CccCCCCEEEEEEC----CCcEEEEECCCC--ce--eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356 1 MYNCKDEHLASISL----SGDLILHNLASG--AK--AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP 72 (568)
Q Consensus 1 afSpdG~~LasGs~----DG~V~VWDl~tg--~~--v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~ 72 (568)
+++|++++|++... +|.|..|++... ++ +..... .......++++++++.++++--.+|.|.+|++.....
T Consensus 43 ~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 43 AVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 36789999998876 478999988653 32 333332 2233345899999995455445699999999976432
Q ss_pred eeEE--ec-----------cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc--eee----EeecCCCeEEEEEec
Q 008356 73 KVSW--LK-----------QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR--PSS----CITYEAPFSSLAFID 132 (568)
Q Consensus 73 ~v~~--l~-----------~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~--~v~----~~~h~~~ItsLafsP 132 (568)
.... .. .......++.|+|+++++++.. ....|++|++.... ... .+......+.++|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 2111 11 1234578999999999888775 34479999997654 322 224567789999999
Q ss_pred CCCEEEEEE-cCCeEEEEECCCCCCceEEEe---ec----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356 133 DDWILTAGT-SNGRVVFYDIRGKPQPLTVLR---AC----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (568)
Q Consensus 133 dg~~LasGs-~DG~V~VWDlrt~~~~v~~l~---~~----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~ 204 (568)
+++++++.. .++.|.+|++......++.+. .. ........|+++|+|++|... ....+.|.
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs-----------nr~~~sI~ 270 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS-----------NRGSNSIS 270 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE-----------ECTTTEEE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE-----------eccCCEEE
Confidence 999887766 478899999983222222222 11 112257889999998776554 33466777
Q ss_pred cCCCCC
Q 008356 205 MPDPLP 210 (568)
Q Consensus 205 VWDlr~ 210 (568)
+|++.+
T Consensus 271 vf~~d~ 276 (345)
T PF10282_consen 271 VFDLDP 276 (345)
T ss_dssp EEEECT
T ss_pred EEEEec
Confidence 777643
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.73 E-value=3e-07 Score=93.97 Aligned_cols=146 Identities=13% Similarity=0.191 Sum_probs=100.6
Q ss_pred ccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 2 fSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
|..|..+++ ....++.|.+|++...+-.+.+... ...+..++|+|+|+++|.+..-|-.|.||.+.+.+... +.-.
T Consensus 56 W~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg-~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~p 132 (447)
T KOG4497|consen 56 WKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG-QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHP 132 (447)
T ss_pred eeccceeeeeeeeccceEEEEEeecceeEEEeccC-CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccc
Confidence 445555554 4567899999999998888888864 44567799999999999999999999999998877322 3333
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEECCCCceeeEeecCCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDK------------------------------------KLYTYDPGSRRPSSCITYEAP 124 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DG------------------------------------tV~IWDlrt~~~v~~~~h~~~ 124 (568)
...+..++|+|||++.+.++... .+.+||---.-.+......-.
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG 212 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence 44568899999999887665432 233333221111111222345
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 125 FSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 125 ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
+..++|+|.+++|++|+.|+.++|.+
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhc
Confidence 66777777777777777777777654
No 254
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.72 E-value=3.5e-07 Score=92.35 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=122.0
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeCCC-----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC-CceeEEeccCC
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKDPN-----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR-SPKVSWLKQHS 81 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h-----~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~-~~~v~~l~~H~ 81 (568)
.|+-+..+|.|.++..........+.+-. ....-++.|++.+. -++++..+|.+.+-+.... -..++.++.|.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He 165 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHE 165 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccc
Confidence 35556667888888764433333333211 11134578888887 5888888999885554332 23356789999
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeE--eecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCC
Q 008356 82 APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSC--ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 82 ~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~--~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
-++.-..|+. +.+++.+|+.|+.+..||+|..+ .+.. ..|...|.+|.-+| .+.++++|+.|-.|++||.|+..+
T Consensus 166 ~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 166 FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 9999999987 67899999999999999999433 2222 24788899998887 578999999999999999998777
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspd 178 (568)
|+..-. -.+.|..+.++|.
T Consensus 246 Pl~~~~---v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 246 PLFKAK---VGGGVWRIKHHPE 264 (339)
T ss_pred ccccCc---cccceEEEEecch
Confidence 665433 4588999999995
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.2e-06 Score=94.93 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=120.7
Q ss_pred ECCCcEEEEECCCCce-----eEEeeCCCCCcEEEEEEccCCCeEEEEEeC--C---------CeEEEEECCCCCceeEE
Q 008356 13 SLSGDLILHNLASGAK-----AAELKDPNEQVLRVLDYSRNSRHLLVTAGD--D---------GTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 13 s~DG~V~VWDl~tg~~-----v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~--D---------GtV~VWDl~t~~~~v~~ 76 (568)
|.-+.|+||....... .+.|. ..+.|. +.|++-|..+|+.++. | .+++++++++.. ...
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V 265 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSV 265 (566)
T ss_pred CCCcEEEEeccccccccchhhhcccc--ccceeE-EEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEE
Confidence 3345688887642111 11121 234555 7999988877766543 2 358888888544 233
Q ss_pred eccCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEEC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASV--GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDI 151 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSg--s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDl 151 (568)
--...++|.++.|+++++.++++ -.-.++.|||++. .++..+ .+++=+++-|+|.|++|+.++. .|.|-|||+
T Consensus 266 ~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df-~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 266 PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF-PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC-CCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence 33457899999999999776655 4566899999874 444444 4567788999999999998776 478999999
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.+.++ +..+. ...-+-+.|+|||++++++.....-.+ |+.++||+..
T Consensus 344 ~n~K~-i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrv------dNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRKL-IAKFK----AANTTVFEWSPDGEYFLTATTAPRLRV------DNGIKIWHYT 390 (566)
T ss_pred cchhh-ccccc----cCCceEEEEcCCCcEEEEEeccccEEe------cCCeEEEEec
Confidence 98643 33332 133456799999999998844322222 8899999863
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1e-05 Score=83.96 Aligned_cols=185 Identities=11% Similarity=0.149 Sum_probs=128.3
Q ss_pred CccCCCCEEEEEECC---CcEEEEECCC--CceeEE--eeCCCCCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCc
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLAS--GAKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSP 72 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~t--g~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~ 72 (568)
+|++++++|.++..+ |.|..|.++. |++... ... ....-.-++++++++ +++++. .-|.|.++-++....
T Consensus 46 ~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~g~~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~ 123 (346)
T COG2706 46 AVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-PGSPPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGS 123 (346)
T ss_pred EECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-CCCCCeEEEECCCCC-EEEEEEccCceEEEEEcccCCc
Confidence 478999999988654 7788887764 553221 111 122224589999998 555555 568999999965321
Q ss_pred e--eEEeccCCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceee----EeecCCCeEEEEEecCCC
Q 008356 73 K--VSWLKQHSAP----------TAGISFSSDDKIIASVGL-DKKLYTYDPGSRRPSS----CITYEAPFSSLAFIDDDW 135 (568)
Q Consensus 73 ~--v~~l~~H~~~----------VtslafsPdg~~LaSgs~-DGtV~IWDlrt~~~v~----~~~h~~~ItsLafsPdg~ 135 (568)
+ ......|.+. +.+..+.|++++|+++.. -.+|.+|++..++... .+......+.|.|+|+++
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k 203 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK 203 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc
Confidence 1 2233445555 889999999999998863 3369999999776432 225667789999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCCCceEEEee-------cCCCCCeeEEEEccCCCeEEEecc
Q 008356 136 ILTAGTS-NGRVVFYDIRGKPQPLTVLRA-------CSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 136 ~LasGs~-DG~V~VWDlrt~~~~v~~l~~-------~~h~~~VtsLafspdg~~Las~s~ 187 (568)
+..+.++ +++|.+|..+.....+..++. +....+...|..+++|++|..+..
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 9988775 899999999875333333332 234456788999999999887733
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.67 E-value=3.2e-06 Score=90.02 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=132.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEeccCCCC
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQHSAP 83 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~~H~~~ 83 (568)
+|++++..+ .|...|++...+- .++..+...|+-..+.-+++ -++.|..|| .+-|||.++.+ +..+...-+.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~---~iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~ 403 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGY---SIQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGN 403 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCe---eEEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEEeeCCccc
Confidence 678888886 4678888765443 33334666688778877777 688899999 89999999987 6667778888
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCC----eEEEEECCCCCCce
Q 008356 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNG----RVVFYDIRGKPQPL 158 (568)
Q Consensus 84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG----~V~VWDlrt~~~~v 158 (568)
|.++..+++|++++.+.....|.++|+.+++....- ...+-|+.+.|+|+++++|-+--+| .|++||+.+.+ ..
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy 482 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IY 482 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EE
Confidence 999999999999999999999999999999865443 4667899999999999999877665 59999999873 22
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
.+. ...+.=.+-+|.|++++|..-
T Consensus 483 ~vT---T~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 483 DVT---TPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred Eec---CCcccccCcccCCCCcEEEEE
Confidence 222 233334567899999988654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.65 E-value=6.4e-08 Score=115.04 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=127.9
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---DDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---~DGtV~VWDl~t~~~~v~~l 77 (568)
.|+.+|+.+..+..||.+.+|... .+.....+. |....+++.|.. . ++++++ +++.+.+||..-.......-
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-Ccceecccc-CCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee
Confidence 378999999999999999999975 666666676 566678888876 2 567665 57889999974322112223
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
..|.+.++++++.|...+|++|+.+|.|++||++..+..+.++. ++ ...++++|+..|.++||++.... .
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~-l 2402 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG-L 2402 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccc-h
Confidence 78999999999999999999999999999999998887766643 44 56799999999999999998763 2
Q ss_pred eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCC
Q 008356 158 LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGD 201 (568)
Q Consensus 158 v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg 201 (568)
+..+. +...-.++ |-..|..+-.+ ....|++++.|+
T Consensus 2403 l~~~p---~e~ak~gf-Fr~~g~Q~~v~----~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2403 LHTFP---SEHAKQGF-FRNIGMQINVG----QCNRIFSCGADG 2438 (2439)
T ss_pred hhcCc---hhhcccch-hhhcCceeeec----cCceEEEecCCC
Confidence 22222 11122233 44444444333 344566666565
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=8e-06 Score=98.30 Aligned_cols=194 Identities=13% Similarity=0.062 Sum_probs=124.4
Q ss_pred ccCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCC----------------CCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356 2 YNCKDEHLASISL-SGDLILHNLASGAKAAELKDPN----------------EQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (568)
Q Consensus 2 fSpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h----------------~~~Vs~Lafspdg~~lLaTgs~DGtV~V 64 (568)
|+++++.|+++.. ++.|+++|+.++. +..+.+.. -..-..++|++++..++++...++.|++
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v 709 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWE 709 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEE
Confidence 5567777766654 4678889986654 33332100 0122568999965557788888999999
Q ss_pred EECCCCCceeEEecc---------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeEee--------
Q 008356 65 WDTTGRSPKVSWLKQ---------------HSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSSCIT-------- 120 (568)
Q Consensus 65 WDl~t~~~~v~~l~~---------------H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~~~~-------- 120 (568)
||..++.. ..+.+ .-...+.|+|+|++++| ++-..++.|++||+.++.......
T Consensus 710 ~d~~~g~v--~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 710 YNISDGVT--RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EECCCCeE--EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 99876542 21111 11245679999998855 555677899999998765321110
Q ss_pred ------c--------CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecC------------CCCCeeEEE
Q 008356 121 ------Y--------EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACS------------SSEAVSSLC 174 (568)
Q Consensus 121 ------h--------~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~------------h~~~VtsLa 174 (568)
. -.....++++++|+++++-..+++|++||..+.. . ..+...+ +-.....++
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~-v-~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR-V-TTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe-E-EEEeccCCcCCCCCcccccccCCceEEE
Confidence 0 1124688999999988888899999999998752 1 2222111 112455677
Q ss_pred EccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
++++|+ ++++...++.|++||+....
T Consensus 866 vd~dG~------------lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 866 LGENGR------------LFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeCCCC------------EEEEECCCCEEEEEECCCCc
Confidence 776543 45555668899999986643
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.8e-06 Score=91.48 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=122.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEee-CCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCC
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELK-DPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAP 83 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~-~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~ 83 (568)
+-..|+.|...|.|.+|++..++....+. +.|.+.|.++.++.+-. .|.+++.|+.+..|+..... .++.+......
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~ 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV-IIRIWKEQKPL 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce-eeeeeccCCCc
Confidence 34567888889999999999999887776 67889999998888776 79999999999999998876 46777788888
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecC-----CCEEEEE-EcCCeEEEEECCC
Q 008356 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDD-----DWILTAG-TSNGRVVFYDIRG 153 (568)
Q Consensus 84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPd-----g~~LasG-s~DG~V~VWDlrt 153 (568)
+..++.+||+..+++++ ++|++||+++++.+..| +|.++|+++.|--+ |.+++++ ..+..+.+|-++.
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999999886 68999999999999988 79999999999876 6666654 4456688887765
No 261
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.60 E-value=1.4e-07 Score=104.26 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=145.1
Q ss_pred ccCCC-CEEEEEECCCcEEEEECCCCc-eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 2 YNCKD-EHLASISLSGDLILHNLASGA-KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 2 fSpdG-~~LasGs~DG~V~VWDl~tg~-~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
|++.. ..|++++.|-.|..||+.... .+.....-+... ..|+|+-...+++ +.+..+.|++||.+.+..++..+++
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a-sqVkwnyk~p~vl-asshg~~i~vwd~r~gs~pl~s~K~ 199 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA-SQVKWNYKDPNVL-ASSHGNDIFVWDLRKGSTPLCSLKG 199 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCcceeeeecccccC-ceeeecccCcchh-hhccCCceEEEeccCCCcceEEecc
Confidence 45554 578999999999999998765 344444434333 4589998777544 4466778999999988878899999
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC--ceeeEeecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECC--
Q 008356 80 HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSR--RPSSCITYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIR-- 152 (568)
Q Consensus 80 H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~--~~v~~~~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlr-- 152 (568)
|...|+.++|+. ....+.+++.|++|+.||.... +..+.+....+|..-++-|- |.++.---.+..|.+++.+
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~ 279 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENS 279 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccch
Confidence 999999999987 5667899999999999998753 44555667778888888773 3333322223345555444
Q ss_pred -------CCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 153 -------GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 153 -------t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
...+++..+. +|...|..+.|...+....- ....+..|++.+.|..+++|-+.
T Consensus 280 d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d--~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 280 DLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGD--YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhhccccCCcceeeec--CcchHHHHHhhhhcccccCC--CCccceeEEEeecCCceEeeecc
Confidence 3445666665 89999998888765432111 13355789999999999999875
No 262
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.55 E-value=1e-06 Score=92.05 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=107.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc----eeEEeeCCCCCcEEEEEEccCCCeEEE--EEeCCCeEEEEECCCCCceeE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA----KAAELKDPNEQVLRVLDYSRNSRHLLV--TAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~----~v~~l~~~h~~~Vs~Lafspdg~~lLa--Tgs~DGtV~VWDl~t~~~~v~ 75 (568)
+++++++||++..+...++++..... ++..... ...-+.+.|..+....++ .+++...+.+|...... ..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v--~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~--~~ 145 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV--PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR--CE 145 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec--ccCcceeeeeeccceEEEEeecCCceeeeeecccccC--cc
Confidence 57888999999888887777765333 2222221 222344555555542222 23344455555555433 45
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE--eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~--~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.+.+|-..+++|+|+||+++|+++..|..|++-.......+.. ++|..-|..++.-++ +.|++++.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 6788999999999999999999999999999987766555443 379999999999865 5689999999999999999
Q ss_pred CCCc
Q 008356 154 KPQP 157 (568)
Q Consensus 154 ~~~~ 157 (568)
++++
T Consensus 225 gk~L 228 (390)
T KOG3914|consen 225 GKLL 228 (390)
T ss_pred CCcc
Confidence 8654
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=98.17 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=132.1
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 008356 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGS 112 (568)
Q Consensus 35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt 112 (568)
.|.+.|..|.|+..|. +|++|++|..|.+||......+.....+|...|....|-| +...|++++.||.|++=.+..
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 4778899999999998 8999999999999999888877888889999999999998 678899999999999887654
Q ss_pred -Ccee---eEeecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeEEE
Q 008356 113 -RRPS---SCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVFID 184 (568)
Q Consensus 113 -~~~v---~~~~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~Las 184 (568)
+.+. ..-.|.++|..++.-|+ .+.|.+++.|+.|.-+|++.........+...+.. ....++.+|...
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt---- 294 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT---- 294 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc----
Confidence 3222 23369999999999996 46788999999999999998644333333333433 466777777532
Q ss_pred eccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 185 ETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
..+..++.|..+++||.|.+..
T Consensus 295 -------~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 295 -------NEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred -------cccccCChhhhhhhhcccchhh
Confidence 3455566799999999987664
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.50 E-value=2.8e-06 Score=87.52 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=140.1
Q ss_pred CCCCEEEEEECCCcEEEEE-CCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc---eeEEecc
Q 008356 4 CKDEHLASISLSGDLILHN-LASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP---KVSWLKQ 79 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWD-l~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~---~v~~l~~ 79 (568)
|..+-+++.+.|.+++||- .+.++.-..+.......++++.+.++.. .|++|-++|++.-+.+...-. ..+....
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~ 112 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLA 112 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhh
Confidence 3445678889999999995 4456665555543467789999999887 799999999999998743221 2444567
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------ceeeE
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----------------------------------------RPSSC 118 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-----------------------------------------~~v~~ 118 (568)
|..+|..+.|+-...++++.+.|..+..--.+.+ .++..
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 8888999988888888888877765432211111 11111
Q ss_pred e-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 008356 119 I-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (568)
Q Consensus 119 ~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~ 197 (568)
+ +|.+.+.+++|.+...+|.+|..|..|.+||+-..... .+..++|...|..+...+- -..++++
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~--~~el~gh~~kV~~l~~~~~------------t~~l~S~ 258 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT--AYELQGHNDKVQALSYAQH------------TRQLISC 258 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce--eeeeccchhhhhhhhhhhh------------heeeeec
Confidence 2 47788999999999999999999999999999876543 3344488899988876663 3456777
Q ss_pred cCCCcEEcCCCCC
Q 008356 198 AVGDSILMPDPLP 210 (568)
Q Consensus 198 s~Dg~V~VWDlr~ 210 (568)
+.|+.|.+||...
T Consensus 259 ~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 259 GEDGGIVVWNMNV 271 (404)
T ss_pred cCCCeEEEEeccc
Confidence 8899999999864
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.49 E-value=1.5e-06 Score=91.02 Aligned_cols=163 Identities=14% Similarity=0.122 Sum_probs=114.3
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCCc--eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe---EEEEECCCCce
Q 008356 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP--KVSWLKQHSAPTAGISFSSDDKIIASVGLDKK---LYTYDPGSRRP 115 (568)
Q Consensus 41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~--~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt---V~IWDlrt~~~ 115 (568)
..+..++.++ +++.+..+....++++..... .......-...-+++.|..+...+..+...|. +.+|....+.+
T Consensus 66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3345566666 888888888877777755442 12222223334455666665566655555554 44555455777
Q ss_pred eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEE
Q 008356 116 SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALL 195 (568)
Q Consensus 116 v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Ll 195 (568)
..+++|-..+..++|+||+++|+++..|..|+|-...... .+..++ .||..-|..++.-++ ..|+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~Iesfc-lGH~eFVS~isl~~~-------------~~Ll 209 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFC-LGHKEFVSTISLTDN-------------YLLL 209 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhc-cccHhheeeeeeccC-------------ceee
Confidence 7788999999999999999999999999999997766542 222232 389999999987663 3478
Q ss_pred EecCCCcEEcCCCCCCCccccccc
Q 008356 196 GGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 196 s~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
+++.|++|++||++.+........
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ecCCCCcEEEEecccCCcccccch
Confidence 888899999999999887765544
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=1.4e-06 Score=89.72 Aligned_cols=199 Identities=7% Similarity=0.084 Sum_probs=130.4
Q ss_pred CEEEEEECCCcEEEEECCCCc-----------------------------------eeEEeeCCCCCcEEEEEEccCCCe
Q 008356 7 EHLASISLSGDLILHNLASGA-----------------------------------KAAELKDPNEQVLRVLDYSRNSRH 51 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~-----------------------------------~v~~l~~~h~~~Vs~Lafspdg~~ 51 (568)
.+++....|.+|++|.+.... +.+.+...|...|++|.++.|.+
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 467777889999999875321 11233445777788999999887
Q ss_pred EEEEEeCCCeEEEEECCCCC--ceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcee----eEe
Q 008356 52 LLVTAGDDGTLHLWDTTGRS--PKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPS----SCI 119 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~-----~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v----~~~ 119 (568)
.++ ..+|=.|.+|++.-.. -.+.-++.+. .-|++..|+| ..+.++..+..|+|++.|+|..... ..+
T Consensus 178 t~l-SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 178 TFL-SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred eEe-eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 344 4678899999985322 1233344443 4589999999 8889999999999999999953321 111
Q ss_pred e-------------cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC---CeEE
Q 008356 120 T-------------YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK---PVFI 183 (568)
Q Consensus 120 ~-------------h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg---~~La 183 (568)
. --..|..+.|+++|+++++-.. -+|+|||+....+|+..+..+.+-..-.|-.+-.|. ++-+
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 1 1235889999999999998754 579999998877888877643221110000011110 1111
Q ss_pred EeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 184 DETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 184 s~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+ +..++.++++|+....++++++..
T Consensus 336 ~--~sg~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 336 S--WSGNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred E--EcCCcceEecccccceEEEecCCC
Confidence 1 233566777778888889888543
No 267
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=4.7e-06 Score=94.46 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=139.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
++..++.|+....+..+|+.+.+..+.... ....|..++. +++ ++++|...|+|.+-|.++.+ .++.+..|.+.|
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCc-EEEeecccceEEeecCCcCc-eeeeeeccccce
Confidence 556788888888899999988776665543 2333555543 455 79999999999999998887 488999999999
Q ss_pred EEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeEeecCCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 008356 85 AGISFSSDDKIIASVGL---------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 85 tslafsPdg~~LaSgs~---------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~ 154 (568)
.+++.. |+.|++||. |..|+|||+|..+.+.-+.......-+.|+|. ...+++++..|...+.|..+-
T Consensus 221 SDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 221 SDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecccccc
Confidence 877665 899999985 45689999999877766654444567888885 567888999999999995442
Q ss_pred CCc-eEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 155 PQP-LTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 155 ~~~-v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
..+ ..+.........+..+++++++..++.+ ..+|.|.+|--++..
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafg------------d~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFG------------DHEGHVNLWADRPQP 345 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEe------------cccCcEeeecCCCCC
Confidence 222 2333322444558899999987776665 458999999755543
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=3e-05 Score=82.85 Aligned_cols=191 Identities=11% Similarity=0.028 Sum_probs=136.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeC-CC------CCcEEEEE----Ecc-CCCeEEEEEeCCCeEEEEECCCC
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKD-PN------EQVLRVLD----YSR-NSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~-~h------~~~Vs~La----fsp-dg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
|.||+.|+.- ..|.|++||.++.+....--+ +. ...+.-.+ |+. +|+ +++..+. |++.|.+...+
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEec-CcEEEECCCCC
Confidence 5688887754 568899999876653321111 00 11111111 232 344 7777776 77777776655
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
. . .-.+|...|.-..+.-+++-++.|..|| .|-+||.++++..+....-+.|.+++.+++|++++++.....|.++
T Consensus 352 ~--~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 352 Y--S-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred e--e-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 4 2 2345777798888888888899999999 8999999999888777888899999999999999999999999999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
|++++.. +++.. ...+-|+.+.|+|++++++.+.- .+.+ -..|+++|+..
T Consensus 429 didngnv--~~idk-S~~~lItdf~~~~nsr~iAYafP--~gy~------tq~Iklydm~~ 478 (668)
T COG4946 429 DIDNGNV--RLIDK-SEYGLITDFDWHPNSRWIAYAFP--EGYY------TQSIKLYDMDG 478 (668)
T ss_pred EecCCCe--eEecc-cccceeEEEEEcCCceeEEEecC--ccee------eeeEEEEecCC
Confidence 9999852 33321 34577999999999999998732 2222 46677777654
No 269
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.41 E-value=1.6e-06 Score=89.27 Aligned_cols=102 Identities=18% Similarity=0.333 Sum_probs=83.4
Q ss_pred EEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356 10 ASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (568)
Q Consensus 10 asGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl 87 (568)
..|...|.|.+..+. ....+..+.+ |.+.+.+++|.+..+ +|++|..|..|.+||+-........+.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhh
Confidence 345555666555443 3445666776 777889999999877 899999999999999987776778899999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC
Q 008356 88 SFSSDDKIIASVGLDKKLYTYDPGSR 113 (568)
Q Consensus 88 afsPdg~~LaSgs~DGtV~IWDlrt~ 113 (568)
...+.-+.+++++.||.|.+||....
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 99888899999999999999998653
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.40 E-value=0.00014 Score=77.22 Aligned_cols=199 Identities=10% Similarity=0.081 Sum_probs=126.1
Q ss_pred ccCCCCEEEEEEC----------CCcEEEEECCCCceeEEeeCCCC------CcEEEEEEccCCCeEEEEEeC-CCeEEE
Q 008356 2 YNCKDEHLASISL----------SGDLILHNLASGAKAAELKDPNE------QVLRVLDYSRNSRHLLVTAGD-DGTLHL 64 (568)
Q Consensus 2 fSpdG~~LasGs~----------DG~V~VWDl~tg~~v~~l~~~h~------~~Vs~Lafspdg~~lLaTgs~-DGtV~V 64 (568)
++|||+.|+++.. +..|.+||+.+.+.+.++..+.+ ..-..++++++|+.+++.--. +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 6899998887765 68999999999999988875322 122357899999954444434 789999
Q ss_pred EECCCCCceeE--------------------Eecc---------------CCCCeEEE---------EEcC-CCCEEEEE
Q 008356 65 WDTTGRSPKVS--------------------WLKQ---------------HSAPTAGI---------SFSS-DDKIIASV 99 (568)
Q Consensus 65 WDl~t~~~~v~--------------------~l~~---------------H~~~Vtsl---------afsP-dg~~LaSg 99 (568)
.|+..++.... +..+ +..+|... .|.+ ++++++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 99876652110 0000 00011000 2234 67776666
Q ss_pred eCCCeEEEEECCCC-----ceeeEee--------cCCCeEEEEEecCCCEEEEEEc----------CCeEEEEECCCCCC
Q 008356 100 GLDKKLYTYDPGSR-----RPSSCIT--------YEAPFSSLAFIDDDWILTAGTS----------NGRVVFYDIRGKPQ 156 (568)
Q Consensus 100 s~DGtV~IWDlrt~-----~~v~~~~--------h~~~ItsLafsPdg~~LasGs~----------DG~V~VWDlrt~~~ 156 (568)
.+ |+|.+.|+... +....+. ..+.+.-++++++++.+++... .+.|.++|..+.+.
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv 291 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR 291 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence 65 99999996543 2233321 1223445999999998888431 24799999988742
Q ss_pred ceEEEeecCCCCCeeEEEEccCCC-eEEEeccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKP-VFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~-~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
+..+. -...+..++++|+++ .|+.. ...++.|.++|+.......+
T Consensus 292 -i~~i~---vG~~~~~iavS~Dgkp~lyvt-----------n~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 292 -LRKIE---LGHEIDSINVSQDAKPLLYAL-----------STGDKTLYIFDAETGKELSS 337 (352)
T ss_pred -EEEEe---CCCceeeEEECCCCCeEEEEe-----------CCCCCcEEEEECcCCeEEee
Confidence 33332 346789999999876 43322 23477788999876654443
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.39 E-value=2.3e-05 Score=94.46 Aligned_cols=153 Identities=12% Similarity=0.193 Sum_probs=107.9
Q ss_pred ccCC-CCEEEEEECCCcEEEEECCCCceeEEeeCC--------------CCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356 2 YNCK-DEHLASISLSGDLILHNLASGAKAAELKDP--------------NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (568)
Q Consensus 2 fSpd-G~~LasGs~DG~V~VWDl~tg~~v~~l~~~--------------h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD 66 (568)
|+|+ +.++++...++.|++||..++... .+.+. .-.....|+|+++++.++++-..++.|++||
T Consensus 690 ~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 690 FEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALD 768 (1057)
T ss_pred EecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 5664 455566667889999998776532 22110 0112356899999986777777889999999
Q ss_pred CCCCCceeEE------------ec--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC----
Q 008356 67 TTGRSPKVSW------------LK--------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE---- 122 (568)
Q Consensus 67 l~t~~~~v~~------------l~--------~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~---- 122 (568)
+.++...... +- ..-.....++++++++++++-..+++|++||..++.........
T Consensus 769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~ 848 (1057)
T PLN02919 769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF 848 (1057)
T ss_pred CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence 9765421110 00 00112468899999998888899999999999887665443211
Q ss_pred ----------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 123 ----------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 123 ----------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
.....++++++|+++++-+.++.|++||+++..
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 246789999999988888899999999998864
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=1.4e-06 Score=96.57 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=138.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCC-CceeEEeeCCCCCcEEEEEEccCCCe-EEEEEeCCCeEEEEECCC--CCceeEEe
Q 008356 2 YNCKDEHLASISLSGDLILHNLAS-GAKAAELKDPNEQVLRVLDYSRNSRH-LLVTAGDDGTLHLWDTTG--RSPKVSWL 77 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~t-g~~v~~l~~~h~~~Vs~Lafspdg~~-lLaTgs~DGtV~VWDl~t--~~~~v~~l 77 (568)
.+|.|+-+|.++.-| +++.|+.. ...-.-+.....-.|-++.|++.... +-++......-.+|++.. .......+
T Consensus 32 i~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~l 110 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVL 110 (1081)
T ss_pred eccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEE
Confidence 467777778777766 55666653 33333333112334566788876421 233334455667899843 23335567
Q ss_pred ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 78 KQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 78 ~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
.+|...|+++.|+| ....+++++.|-.|..||++... ++..+ .-...-..++|+.....+++.+..+.|++||++.+
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g 190 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG 190 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCC
Confidence 88999999999999 66788999999999999999854 44443 34456678999985445555556678999999999
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
..++..++ +|...|+.++|..- ....+++.+.|++|+.||..+...
T Consensus 191 s~pl~s~K--~~vs~vn~~~fnr~-----------~~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 191 STPLCSLK--GHVSSVNSIDFNRF-----------KYSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred CcceEEec--ccceeeehHHHhhh-----------hhhhhcccCCCCceeeeccccccc
Confidence 88888887 68888999988763 344677888899999999876554
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=0.00021 Score=74.39 Aligned_cols=184 Identities=13% Similarity=0.148 Sum_probs=123.3
Q ss_pred CccCCCCEEEEEEC-CCcEEEEECCC-Ccee---EEeeCCCCCc----------EEEEEEccCCCeEEEEEe-CCCeEEE
Q 008356 1 MYNCKDEHLASISL-SGDLILHNLAS-GAKA---AELKDPNEQV----------LRVLDYSRNSRHLLVTAG-DDGTLHL 64 (568)
Q Consensus 1 afSpdG~~LasGs~-DG~V~VWDl~t-g~~v---~~l~~~h~~~----------Vs~Lafspdg~~lLaTgs-~DGtV~V 64 (568)
+++++|++|+++.. .|.|.++-+.. |... ..++ |.+. +....+.|+++ +|++.. .--.|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFL 171 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEE
Confidence 35678999988865 58999999854 4432 2222 2222 77889999998 455544 3456999
Q ss_pred EECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCC--c--eeeEe-------ecCCCeEEEEE
Q 008356 65 WDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSR--R--PSSCI-------TYEAPFSSLAF 130 (568)
Q Consensus 65 WDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~--~--~v~~~-------~h~~~ItsLaf 130 (568)
|++..+... ......-......|.|+|++++..... .+++|-+|..... + .++.+ ........|.+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999865421 111113345578899999999886655 6899999998773 2 12222 13456788999
Q ss_pred ecCCCEEEEEEc-CCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEecc
Q 008356 131 IDDDWILTAGTS-NGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 131 sPdg~~LasGs~-DG~V~VWDlrt~~~~v~~l~~-~~h~~~VtsLafspdg~~Las~s~ 187 (568)
++||++|.+... ...|.+|.+......+..+.. ..+....+.+.|++.|++|++...
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 999999998764 346888888765433444332 235555889999998888776643
No 274
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=1.9e-05 Score=86.13 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=134.5
Q ss_pred CccCCCCEEEEEE---CC-CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCcee
Q 008356 1 MYNCKDEHLASIS---LS-GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKV 74 (568)
Q Consensus 1 afSpdG~~LasGs---~D-G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v 74 (568)
+|+|++..++... .. ..++++++++++....+. ....-..-+|+|+|+.++++...||. |+++|+.++. .
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--~ 274 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--L 274 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--c
Confidence 4788888765542 22 469999999887655554 22233346899999988899888887 5566666655 3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-Ce--EEE
Q 008356 75 SWLKQHSAPTAGISFSSDDKIIASVGLDK---KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-GR--VVF 148 (568)
Q Consensus 75 ~~l~~H~~~VtslafsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G~--V~V 148 (568)
..+....+.-..-.|+|||++|+..+..+ .|.++|.+.....+.....+.-..-.|+|||++|+..+.. |. |.+
T Consensus 275 ~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~ 354 (425)
T COG0823 275 PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDK 354 (425)
T ss_pred eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEE
Confidence 33444444344677999999998776443 5888888877664444444444488899999999987753 44 777
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEc
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILM 205 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~V 205 (568)
+|+..... +..+ .+......-.|.++++.+...+....+..+.....++.+..
T Consensus 355 ~~~~~~~~-~~~l---t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 355 NDLASGGK-IRIL---TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred eccCCCCc-EEEc---cccccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 77776643 3333 34455566789999999888766666777777777776654
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.7e-05 Score=83.54 Aligned_cols=150 Identities=13% Similarity=0.192 Sum_probs=107.7
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE-eCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCE
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA-GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKI 95 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg-s~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~ 95 (568)
++++++++... +.+.....++|+++.|+++++.+.++- -.=-.+-|||++..- +. .-..++=+++-|+|.|++
T Consensus 252 ~Lyll~t~g~s--~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--v~--df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGES--VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--VF--DFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCce--EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--eE--eCCCCCccceEECCCCCE
Confidence 68888876223 334444678999999999998544443 345679999998754 32 334556688999999999
Q ss_pred EEEEeC---CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc------CCeEEEEECCCCCCceEEEeecCC
Q 008356 96 IASVGL---DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS------NGRVVFYDIRGKPQPLTVLRACSS 166 (568)
Q Consensus 96 LaSgs~---DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~------DG~V~VWDlrt~~~~v~~l~~~~h 166 (568)
|+.+|- -|.|-+||+.+.+++..+.. ...+-+.|+|||.+|++++. |+.++||+..+..--.+.+
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f----- 399 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF----- 399 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh-----
Confidence 998885 46899999999777766533 34567899999999999876 6779999998762111111
Q ss_pred CCCeeEEEEccC
Q 008356 167 SEAVSSLCWQRA 178 (568)
Q Consensus 167 ~~~VtsLafspd 178 (568)
......++|.|.
T Consensus 400 ~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 400 KSELLQVEWRPF 411 (566)
T ss_pred hHhHhheeeeec
Confidence 125778899874
No 276
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.22 E-value=4.9e-05 Score=81.87 Aligned_cols=184 Identities=15% Similarity=0.137 Sum_probs=124.6
Q ss_pred EECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC----------CCeEEEEECCCCCceeEEeccCC
Q 008356 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD----------DGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~----------DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
.+..+.++||.+..+..+....--.-+.+. +.|.+.|+.+++-.-. ...++|++++.....+ ...-.
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q-LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~ 274 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ-LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLK 274 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccE-EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccce--ecccc
Confidence 456678888888766554432211223444 8999999865553321 1458899998766333 33667
Q ss_pred CCeEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC---CeEEEEECCCCCC
Q 008356 82 APTAGISFSSDDKIIASV--GLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN---GRVVFYDIRGKPQ 156 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSg--s~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VWDlrt~~~ 156 (568)
++|..++|.|.++.++++ -.+-.+.++|++.. +.....+..=+.+.|+|.++++++++.| |.|.+||..+...
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 899999999977766554 47888999999976 3344445556678899999999997765 6799999988754
Q ss_pred ceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
.+..+. + ....-+.|+|+++++.+...+.. --.|..+++||+.-
T Consensus 353 ~~~~~~--~--~n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v~g 396 (561)
T COG5354 353 VAGAFN--G--LNTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDVYG 396 (561)
T ss_pred EEEEee--c--CCceEeeccCCceEEEecCCCcc------cccCcceEEEEecC
Confidence 332332 2 22344689999999877633222 12389999999853
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00041 Score=75.68 Aligned_cols=160 Identities=9% Similarity=0.094 Sum_probs=102.7
Q ss_pred CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEE-EEeC--CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 008356 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLV-TAGD--DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (568)
Q Consensus 16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLa-Tgs~--DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd 92 (568)
..|.+-|.. |...+.+.. .. .+....|+|+++.+++ +... +..|+++|+.+++ ...+....+.+....|+||
T Consensus 169 ~~l~~~d~d-g~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~~~g~~~~~~~SPD 243 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIASSQGMLVVSDVSKD 243 (419)
T ss_pred ceEEEECCC-CCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEecCCCcEEeeEECCC
Confidence 356666653 443444443 23 5667899999985344 3333 3569999998876 3344445566777889999
Q ss_pred CCEEEEEe-C--CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC-C--eEEEEECCCCCCceEEEeecCC
Q 008356 93 DKIIASVG-L--DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN-G--RVVFYDIRGKPQPLTVLRACSS 166 (568)
Q Consensus 93 g~~LaSgs-~--DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G--~V~VWDlrt~~~~v~~l~~~~h 166 (568)
++.|+... . +..|+++|+.+++......+........|+|||+.|+..+.. + .|+++|+.++.. +.+...+
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g- 320 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHG- 320 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--EeCccCC-
Confidence 98776543 2 357999999888755444444334556899999988877642 3 588888887632 2222111
Q ss_pred CCCeeEEEEccCCCeEEEec
Q 008356 167 SEAVSSLCWQRAKPVFIDET 186 (568)
Q Consensus 167 ~~~VtsLafspdg~~Las~s 186 (568)
. ....|+|+|++|+...
T Consensus 321 -~--~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 321 -K--NNSSVSTYKNYIVYSS 337 (419)
T ss_pred -C--cCceECCCCCEEEEEE
Confidence 1 1348999999987763
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.20 E-value=4.7e-06 Score=83.14 Aligned_cols=75 Identities=25% Similarity=0.427 Sum_probs=68.8
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGS 112 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt 112 (568)
..|.+++-+|..++++++|++||.+-+||.+....+...++.|+.+++.+.|+| ++..|+++++||.+..||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 448889999998899999999999999999988767788899999999999999 889999999999999999764
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.20 E-value=0.00011 Score=74.47 Aligned_cols=153 Identities=11% Similarity=0.113 Sum_probs=103.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCC------CCCcEEEEEEccCC-----CeEEEEEeCCCeEEEEECCC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDP------NEQVLRVLDYSRNS-----RHLLVTAGDDGTLHLWDTTG 69 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~------h~~~Vs~Lafspdg-----~~lLaTgs~DGtV~VWDl~t 69 (568)
+|+||+..||.+...|+|++||+.. ..+..+... ....|..+.|.+.. ...|++-..+|.++-|-+..
T Consensus 50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 5899999999999999999999864 333333321 23556677776543 22466667888888887632
Q ss_pred C--C--ceeE--Eec-cCCCCeEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCcee---------------
Q 008356 70 R--S--PKVS--WLK-QHSAPTAGISFSSDDKIIASVGL----DK-------KLYTYDPGSRRPS--------------- 116 (568)
Q Consensus 70 ~--~--~~v~--~l~-~H~~~VtslafsPdg~~LaSgs~----DG-------tV~IWDlrt~~~v--------------- 116 (568)
+ + ...+ .+. .+...|+++.|+|..++|+.||. ++ -+..|.+-++.+.
T Consensus 129 gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~ 208 (282)
T PF15492_consen 129 GTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS 208 (282)
T ss_pred ccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccc
Confidence 1 1 1111 122 24678999999999888887763 11 2556655322110
Q ss_pred ------e-----Ee----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 117 ------S-----CI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 117 ------~-----~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
+ .+ .....|..|.++|||..||+.+.+|.|.+|++-.-
T Consensus 209 ~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 209 KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0 01 13566889999999999999999999999999764
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.20 E-value=4.5e-05 Score=76.56 Aligned_cols=155 Identities=10% Similarity=0.013 Sum_probs=103.9
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEE
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFS-SDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLA 129 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslafs-Pdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLa 129 (568)
+|+.|+.-|...+|...+++........|...|+-+.=. -....+..++.|.++++.++..+....... ..-.+.+++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 789999999999999987775555555555543322111 123456778889999988887554332221 112388999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 130 FIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 130 fsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+++|++++++.+....|.+|.+......+..+........-.+..|+. ....++.+..|+.+.|||+|
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~------------~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE------------NDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc------------CcceEEEEecCCcEEEEEec
Confidence 999999999999999999999987543222222112233334555655 34455666779999999999
Q ss_pred CCCcccccc
Q 008356 210 PSVTTSSVS 218 (568)
Q Consensus 210 ~~~~~~s~~ 218 (568)
....+....
T Consensus 234 ~~~tpm~~~ 242 (344)
T KOG4532|consen 234 NMATPMAEI 242 (344)
T ss_pred ccccchhhh
Confidence 988766543
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.18 E-value=2.9e-06 Score=84.62 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=96.1
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCceee-EeecCCC
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASVG-----LDKKLYTYDPGSRRPSS-CITYEAP 124 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSgs-----~DGtV~IWDlrt~~~v~-~~~h~~~ 124 (568)
-++++..||.+.+++.+......+.+.. |.+ -.+.++...++.|.+++ .-+..+.|+++..+.+. .......
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~ 181 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDA 181 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccccc
Confidence 5899999999999998652211111111 111 12223333445444433 12345666665433221 1123345
Q ss_pred eEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcE
Q 008356 125 FSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI 203 (568)
Q Consensus 125 ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V 203 (568)
+.+++-+|. .+.+++|+.||.|.+||.|+...+...+. .|..++..+-|+|. +...|++++.||.+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~--ahk~~i~eV~FHpk-----------~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK--AHKAEIWEVHFHPK-----------NPEHLFTCSEDGSL 248 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH--HhhhhhhheeccCC-----------CchheeEecCCCcE
Confidence 999999994 56788899999999999999877777776 79999999999995 45567888889999
Q ss_pred EcCCCC
Q 008356 204 LMPDPL 209 (568)
Q Consensus 204 ~VWDlr 209 (568)
..||-.
T Consensus 249 w~wdas 254 (319)
T KOG4714|consen 249 WHWDAS 254 (319)
T ss_pred EEEcCC
Confidence 999965
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=4e-06 Score=86.43 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=115.2
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----ceeeE
Q 008356 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-----RPSSC 118 (568)
Q Consensus 44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-----~~v~~ 118 (568)
+|+-+-..+-++.+.+-.|-+-|+.++-. + .......|.++.|...++++..|+.+|.|..+|+|.+ .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~--q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ--Q-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc--c-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 56544322335566677788888877652 2 2235677999999988999999999999999999874 46677
Q ss_pred eecCCCeEEEEEec-CCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe
Q 008356 119 ITYEAPFSSLAFID-DDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG 197 (568)
Q Consensus 119 ~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~ 197 (568)
+-|+..|+++..-. ++++|++.+-+|+|++||+|.-++...+....+|-..-.-+-++- ...+..++++
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v----------~~eeg~I~s~ 364 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHV----------KEEEGSIFSV 364 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccc----------ccccceEEEc
Confidence 78999999998877 788999999999999999997654333333335544333332222 2245566777
Q ss_pred cCCCcEEcCCCCCCCccccc
Q 008356 198 AVGDSILMPDPLPSVTTSSV 217 (568)
Q Consensus 198 s~Dg~V~VWDlr~~~~~~s~ 217 (568)
+.|...++|.++......+.
T Consensus 365 GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cCeeEEEEEecccCceeecc
Confidence 88999999999865544443
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.18 E-value=0.00063 Score=68.14 Aligned_cols=176 Identities=13% Similarity=0.140 Sum_probs=109.7
Q ss_pred ccC-CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCcee-EEec
Q 008356 2 YNC-KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSPKV-SWLK 78 (568)
Q Consensus 2 fSp-dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~~~~v-~~l~ 78 (568)
|.+ ++.++++--..+.|+.|+..+++.. .+.. .. ...+++. +++ .|+.+..++ +.++|..+++... ....
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~--~~-~~G~~~~~~~g--~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL--PG-PNGMAFDRPDG--RLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEE-EEES--SS-EEEEEEECTTS--EEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec--CC-CceEEEEccCC--EEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 666 4555555556889999998776543 3332 12 4557777 554 355555544 4555987765221 1111
Q ss_pred --c-CCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEE-EEcCCeE
Q 008356 79 --Q-HSAPTAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTA-GTSNGRV 146 (568)
Q Consensus 79 --~-H~~~VtslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~Las-Gs~DG~V 146 (568)
. .....+++++.++|++.++.... |.|..++.. ++.......-...+.|+|+|+++.|++ -+..+.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccccee
Confidence 1 34568999999999977776544 568888887 665555555667889999999997765 5567889
Q ss_pred EEEECCCCCCce---EEEeec-CCCCCeeEEEEccCCCeEEEe
Q 008356 147 VFYDIRGKPQPL---TVLRAC-SSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 147 ~VWDlrt~~~~v---~~l~~~-~h~~~VtsLafspdg~~Las~ 185 (568)
..|++......+ ..+... ...+..-.++++.+|++.++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 999997543311 222211 222347789998877665544
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=1.5e-05 Score=81.27 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=129.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCC-----------CCcEEEEEEccCC-CeEEEEEeCCCeEEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA-----KAAELKDPN-----------EQVLRVLDYSRNS-RHLLVTAGDDGTLHL 64 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h-----------~~~Vs~Lafspdg-~~lLaTgs~DGtV~V 64 (568)
|...|.+|++|...|.|.+|.-+... ...+++.|. .+.|..+.|..++ +.-++..+.|.+|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 44568899999999999999865332 122344422 2357778887654 445777789999999
Q ss_pred EECCCCCce------------------------------------------eEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 008356 65 WDTTGRSPK------------------------------------------VSWLKQHSAPTAGISFSSDDKIIASVGLD 102 (568)
Q Consensus 65 WDl~t~~~~------------------------------------------v~~l~~H~~~VtslafsPdg~~LaSgs~D 102 (568)
|.+.....+ ...-..|..-|+++.|+.|...++++. |
T Consensus 114 WKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-d 192 (460)
T COG5170 114 WKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSAD-D 192 (460)
T ss_pred eeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeecc-c
Confidence 987443100 001235777789999998888777654 6
Q ss_pred CeEEEEECCCCce----eeEeec-----CCCeEEEEEecC-CCEEEEEEcCCeEEEEECCCCCCc---eEEE----eec-
Q 008356 103 KKLYTYDPGSRRP----SSCITY-----EAPFSSLAFIDD-DWILTAGTSNGRVVFYDIRGKPQP---LTVL----RAC- 164 (568)
Q Consensus 103 GtV~IWDlrt~~~----v~~~~h-----~~~ItsLafsPd-g~~LasGs~DG~V~VWDlrt~~~~---v~~l----~~~- 164 (568)
=.|.+|++.-... +.+.+| ...|++..|+|. .+.+...+..|.|++-|+|....+ .+.+ ...
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 6799999875322 222223 235889999995 466777788899999999943111 0111 000
Q ss_pred -----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 165 -----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 165 -----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+-...|..+.|+++|+||++- .--+|++||++...
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsR-------------dyltvkiwDvnm~k 312 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSR-------------DYLTVKIWDVNMAK 312 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEe-------------ccceEEEEeccccc
Confidence 123467889999998887765 14679999998644
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.15 E-value=0.00086 Score=68.13 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=125.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCC--ceeEE--eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 2 YNCKDEHLASISLSGDLILHNLASG--AKAAE--LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg--~~v~~--l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
.+.||++||+. .|..|.|-..++. ..+.. +.......-+-++|+||+. +||.+...|+|++||+.+.. +..+
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~--lf~I 80 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSE--LFVI 80 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEEEEcCCCeEEEEecccce--eEEc
Confidence 35678877765 5677777765432 12222 2222344567799999998 89999999999999998754 2222
Q ss_pred cc-------CCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCC-----ceeeEe----ecCCCeEEEEEecCCC
Q 008356 78 KQ-------HSAPTAGISFSSD------DKIIASVGLDKKLYTYDPGSR-----RPSSCI----TYEAPFSSLAFIDDDW 135 (568)
Q Consensus 78 ~~-------H~~~VtslafsPd------g~~LaSgs~DGtV~IWDlrt~-----~~v~~~----~h~~~ItsLafsPdg~ 135 (568)
.. -...|..+.|... ...|++...+|.++-|-+..+ +....+ .+...|.++.++|.-+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 2345777777652 235777788888887765321 222333 2577899999999988
Q ss_pred EEEEEEcC-C----------eEEEEECCCCCCceEEEee--------------------------cCCCCCeeEEEEccC
Q 008356 136 ILTAGTSN-G----------RVVFYDIRGKPQPLTVLRA--------------------------CSSSEAVSSLCWQRA 178 (568)
Q Consensus 136 ~LasGs~D-G----------~V~VWDlrt~~~~v~~l~~--------------------------~~h~~~VtsLafspd 178 (568)
+|++|+.. . -+..|.+-....-.+.... ......|..|..+||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 88887641 1 2566755432211110000 012345566666665
Q ss_pred CCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccc
Q 008356 179 KPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSL 219 (568)
Q Consensus 179 g~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~ 219 (568)
| ..|++...+|.|.+|++-.........+
T Consensus 241 g------------~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 241 G------------SLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred C------------CEEEEEEcCCeEEEEecCcchhhcccch
Confidence 4 4555557799999999987776666554
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=7.4e-06 Score=84.49 Aligned_cols=140 Identities=13% Similarity=0.235 Sum_probs=102.9
Q ss_pred EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCCCeE
Q 008356 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSAPTA 85 (568)
Q Consensus 10 asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----~~~v~~l~~H~~~Vt 85 (568)
++.+.+-.|.+-|+++|-.. .|. ...-|.++.|...++ +++.|+.+|.|..+|++.. ....+. .-|...|+
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~--sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvt 302 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ--SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVT 302 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc--cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchh
Confidence 44555667888888777532 333 345567788887776 9999999999999999754 222333 34888999
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCceee-EeecCCCeEEEE-----EecCCCEEEEEEcCCeEEEEECCCC
Q 008356 86 GISFSS-DDKIIASVGLDKKLYTYDPGSRRPSS-CITYEAPFSSLA-----FIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 86 slafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~-~~~h~~~ItsLa-----fsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
++.... ++.+|++.+.+|+|++||+|--++.. +...++-++..+ .++....+++++.|...+||.++.+
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 999887 88999999999999999999766522 223344444333 3445678888999999999999987
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00022 Score=81.07 Aligned_cols=176 Identities=16% Similarity=0.261 Sum_probs=121.3
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCC---C-
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGR---S- 71 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~---~- 71 (568)
+|++.+..++.|..+|.|.+++- .-+.+..++.+....|.. -|.-+++++|++.++|+ .|+|||++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~-L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQF-LYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhH-hhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 36788899999999999988873 444557777654454553 45555555788877765 4999999432 2
Q ss_pred cee---EEecc-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE--CCCCc---eeeEeecCCCeEEEEEecCCCEEE
Q 008356 72 PKV---SWLKQ-----HSAPTAGISFSSDDKIIASVGLDKKLYTYD--PGSRR---PSSCITYEAPFSSLAFIDDDWILT 138 (568)
Q Consensus 72 ~~v---~~l~~-----H~~~VtslafsPdg~~LaSgs~DGtV~IWD--lrt~~---~v~~~~h~~~ItsLafsPdg~~La 138 (568)
+.. +.+.. ...++.+++.+.+-+.+|+|-.+|.|.++. +-..+ .......+.+|+.+++..++.-++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 211 12222 346788999999999999999999999884 22111 112224678999999999988755
Q ss_pred EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCC
Q 008356 139 AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKP 180 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~ 180 (568)
.+.....|.+|.+.+......++. .|...+.|..+++...
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTY 227 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec--cCCccceeeecCCCCc
Confidence 555557899999996652233344 5778899999888655
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=1.1e-05 Score=87.14 Aligned_cols=174 Identities=20% Similarity=0.256 Sum_probs=115.0
Q ss_pred eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 008356 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS------PKVSWLKQHSAPTAGISFSSDDKIIASVGLD 102 (568)
Q Consensus 29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~D 102 (568)
++.+.+ |.+.|+.++-..+.+ -+++++.|.+|++|.++... .-..+...|..+|.++.|..+-++++++ |
T Consensus 728 L~nf~G-H~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 728 LCNFTG-HQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eecccC-cHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 344555 566677666555544 69999999999999985321 1134567899999999999888887754 7
Q ss_pred CeEEEEECCCCceeeEe---ecCCCeEEEEEec--CCCEEEEE-EcCCeEEEEECCCCCC--ceEEEeecCCCCCeeEEE
Q 008356 103 KKLYTYDPGSRRPSSCI---TYEAPFSSLAFID--DDWILTAG-TSNGRVVFYDIRGKPQ--PLTVLRACSSSEAVSSLC 174 (568)
Q Consensus 103 GtV~IWDlrt~~~v~~~---~h~~~ItsLafsP--dg~~LasG-s~DG~V~VWDlrt~~~--~v~~l~~~~h~~~VtsLa 174 (568)
+.|.+||.--++++... ...+.+..+..-+ +..++.+| +...+|+++|.|...- .+++....+..+.+++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 88999998777766533 2233333344334 34455555 6788999999997542 223333345557799999
Q ss_pred EccCCCeEEEeccCCCCeEEEEecCCCcEEcCC
Q 008356 175 WQRAKPVFIDETTCKAETALLGGAVGDSILMPD 207 (568)
Q Consensus 175 fspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWD 207 (568)
..+.|++++.+ -+++...++-.-....|.-|.
T Consensus 884 Va~~GN~lAa~-LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 884 VADKGNKLAAA-LSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred eccCcchhhHH-hcCCcEEEEecCCCceeccCC
Confidence 99999998877 233344444444344455564
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=0.00012 Score=79.61 Aligned_cols=197 Identities=10% Similarity=0.163 Sum_probs=117.5
Q ss_pred CccCCCCEEEEEEC-----------CCcEEEEECCCCceeEEeeCC--CCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC
Q 008356 1 MYNCKDEHLASISL-----------SGDLILHNLASGAKAAELKDP--NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT 67 (568)
Q Consensus 1 afSpdG~~LasGs~-----------DG~V~VWDl~tg~~v~~l~~~--h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl 67 (568)
.|||+.+||++-+. ...+.|||+.+|...+.+... ......-+.|+.|++ +++.-.. ..|.||+.
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEt 333 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYET 333 (698)
T ss_pred ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEec
Confidence 38999999998432 247999999999988887752 233344579999998 5665444 56888886
Q ss_pred CCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC----------------------------------------------
Q 008356 68 TGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---------------------------------------------- 101 (568)
Q Consensus 68 ~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~---------------------------------------------- 101 (568)
..-.. +..-.-....|....|+|.+++|+.-..
T Consensus 334 psf~l-ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 334 PSFML-LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKV 412 (698)
T ss_pred Cceee-ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEE
Confidence 44221 1111112233555555555555442210
Q ss_pred -----------CCeEEEEECCCCc-eeeEeecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCC
Q 008356 102 -----------DKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSS 166 (568)
Q Consensus 102 -----------DGtV~IWDlrt~~-~v~~~~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h 166 (568)
-..+-|+.++... ++..+.....|...+|-|.|+.+++-+. ..+|.+|.+++.......+... .
T Consensus 413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-d 491 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-D 491 (698)
T ss_pred EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-c
Confidence 0012222222221 2222344566788899999988877553 3569999988432222222221 2
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
....+.+.|+|.|++++.+. +++ ..+.+.++|...
T Consensus 492 k~~~N~vfwsPkG~fvvva~-------l~s--~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 492 KKFANTVFWSPKGRFVVVAA-------LVS--RRGDLEFYDTDY 526 (698)
T ss_pred ccccceEEEcCCCcEEEEEE-------ecc--cccceEEEecch
Confidence 24567899999999998872 332 578888888753
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.08 E-value=0.0013 Score=65.97 Aligned_cols=162 Identities=17% Similarity=0.179 Sum_probs=106.7
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeC---C-CCCcEEEEEEccCCCeEEEEEeCC--------CeEEEEECCCCCce
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKD---P-NEQVLRVLDYSRNSRHLLVTAGDD--------GTLHLWDTTGRSPK 73 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~---~-h~~~Vs~Lafspdg~~lLaTgs~D--------GtV~VWDl~t~~~~ 73 (568)
+..|+++..+ .+.++|+.+++....+.. . .....+++++.++|+ +.++.... |.|..++.. ++
T Consensus 51 ~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-- 125 (246)
T PF08450_consen 51 DGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-- 125 (246)
T ss_dssp TSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--
T ss_pred CCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--
Confidence 3555656554 456669888865433332 1 345678999999998 66665543 557777766 33
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEECCCCce----eeEe-e--c-CCCeEEEEEecCCCEEEEEEcCC
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIA-SVGLDKKLYTYDPGSRRP----SSCI-T--Y-EAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~La-Sgs~DGtV~IWDlrt~~~----v~~~-~--h-~~~ItsLafsPdg~~LasGs~DG 144 (568)
+..+...-...+.|+|+|+++.|+ +-+..+.|..||+..... ...+ . . .+....+++..+|++.++....+
T Consensus 126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT
T ss_pred EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC
Confidence 334444456689999999998775 556788899999864221 1222 1 2 22478899999999988888899
Q ss_pred eEEEEECCCCCCceEEEeecCCCCCeeEEEEc
Q 008356 145 RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQ 176 (568)
Q Consensus 145 ~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafs 176 (568)
.|.++|.+.. .+..+... ...+++++|-
T Consensus 206 ~I~~~~p~G~--~~~~i~~p--~~~~t~~~fg 233 (246)
T PF08450_consen 206 RIVVFDPDGK--LLREIELP--VPRPTNCAFG 233 (246)
T ss_dssp EEEEEETTSC--EEEEEE-S--SSSEEEEEEE
T ss_pred EEEEECCCcc--EEEEEcCC--CCCEEEEEEE
Confidence 9999999843 44555532 3478999994
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=1.8e-06 Score=97.27 Aligned_cols=201 Identities=15% Similarity=0.165 Sum_probs=134.8
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-eEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG-TLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG-tV~VWDl~t~~~~v~~l~~ 79 (568)
+|+-+.++|++|...|.|++|++.+|.....+.+ |...|+.+.-+.+|..+|.+++... -..+|++.......+.+.
T Consensus 1108 afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~- 1185 (1516)
T KOG1832|consen 1108 AFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFD- 1185 (1516)
T ss_pred EeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHHhccccccCcccccc-
Confidence 4777889999999999999999999998888887 7778888999999985555555554 578999865433343333
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
.-.++.|+.....-+.|.......+||++++.++..+ .....-++..|+|+..+++ .|| .+||.|..
T Consensus 1186 ---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1186 ---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred ---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccH
Confidence 3567888864444445555567899999998877653 2233347889999887765 455 68999986
Q ss_pred CCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCCccccccccccccCCCCCcccCC
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSVTTSSVSLSTAVSGSRPNSRSGP 234 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s~~~s~~~~~~~sslt~ss 234 (568)
. .+..+..+. ---.-.|||+|.-++.. + .|||+|.|....+... ..+...++.+
T Consensus 1258 ~-aIh~FD~ft---~~~~G~FHP~g~eVIIN------------S-----EIwD~RTF~lLh~VP~-----Ldqc~VtFNs 1311 (1516)
T KOG1832|consen 1258 E-AIHRFDQFT---DYGGGGFHPSGNEVIIN------------S-----EIWDMRTFKLLHSVPS-----LDQCAVTFNS 1311 (1516)
T ss_pred H-HHhhhhhhe---ecccccccCCCceEEee------------c-----hhhhhHHHHHHhcCcc-----ccceEEEecc
Confidence 3 333333221 11123588976554433 1 4899999986554321 1334445555
Q ss_pred CCC
Q 008356 235 SAE 237 (568)
Q Consensus 235 sG~ 237 (568)
.|.
T Consensus 1312 tG~ 1314 (1516)
T KOG1832|consen 1312 TGD 1314 (1516)
T ss_pred Ccc
Confidence 554
No 292
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=1.4e-05 Score=88.54 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=113.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCce---------------eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEE
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAK---------------AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLW 65 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~---------------v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VW 65 (568)
+||.+..+|++||.||.++|..+.+... -..+.+ |...|..+.|+.+.+ -|-+...+|.|.||
T Consensus 21 ~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~Q-KLTtSDt~GlIiVW 98 (1189)
T KOG2041|consen 21 EWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQ-KLTTSDTSGLIIVW 98 (1189)
T ss_pred EEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccc-cccccCCCceEEEE
Confidence 4888899999999999999998764321 123444 788899999998876 68888999999999
Q ss_pred ECCCCCceeEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC
Q 008356 66 DTTGRSPKVSW-LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 66 Dl~t~~~~v~~-l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG 144 (568)
-+-.+.-.... -.....-|.++.|+.+|..|+.+-.||.|.+=.+...+.-..--.......+.|++|.+.++.+-.+|
T Consensus 99 mlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ang 178 (1189)
T KOG2041|consen 99 MLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANG 178 (1189)
T ss_pred eeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCC
Confidence 98655421111 12345668999999999999999999998887665443221111222345788999999999999999
Q ss_pred eEEEEECCC
Q 008356 145 RVVFYDIRG 153 (568)
Q Consensus 145 ~V~VWDlrt 153 (568)
.+++||.+.
T Consensus 179 e~hlydnqg 187 (1189)
T KOG2041|consen 179 ETHLYDNQG 187 (1189)
T ss_pred cEEEecccc
Confidence 999999875
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=0.00034 Score=77.04 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=83.2
Q ss_pred EEEEccCCCeEEEEEe----CCCe----EEEEECCCCCce--eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356 42 VLDYSRNSRHLLVTAG----DDGT----LHLWDTTGRSPK--VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 42 ~Lafspdg~~lLaTgs----~DGt----V~VWDl~t~~~~--v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr 111 (568)
++.|+....+.+.+.. .+|. -.+|++..++.. ..........|.+++++|+...++.|+.||.|.+||..
T Consensus 210 ~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~ 289 (545)
T PF11768_consen 210 DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTT 289 (545)
T ss_pred EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcC
Confidence 4678775555565542 3443 456777554422 11223467789999999999999999999999999987
Q ss_pred CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 112 SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 112 t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
.+... .....-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 290 ~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 290 RGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 76433 2245566889999999999999999999999999754
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.01 E-value=0.00027 Score=84.10 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=118.3
Q ss_pred ccCCCCEEEEEECCCcEEEE----ECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Q 008356 2 YNCKDEHLASISLSGDLILH----NLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-------- 69 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VW----Dl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-------- 69 (568)
|-++.+.|+.+..+|.|.+. +..+. ..++-+.-+..|.+++|+||++ +|+.+..+++|.+.+.+-
T Consensus 83 yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l 159 (928)
T PF04762_consen 83 YLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPL 159 (928)
T ss_pred eccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeec
Confidence 34566778888899999999 44332 2333333457899999999998 788888888887764210
Q ss_pred -----CC-c--------eeEEecc------------------------CCCCeEEEEEcCCCCEEEEEeC------CCeE
Q 008356 70 -----RS-P--------KVSWLKQ------------------------HSAPTAGISFSSDDKIIASVGL------DKKL 105 (568)
Q Consensus 70 -----~~-~--------~v~~l~~------------------------H~~~VtslafsPdg~~LaSgs~------DGtV 105 (568)
+. . +...+.+ +...-..|.|-.||.++++.+- -+.+
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 00 0 0000100 2334567889999999998764 2579
Q ss_pred EEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEc---CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 008356 106 YTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTS---NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV 181 (568)
Q Consensus 106 ~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~---DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~ 181 (568)
+||+-+ |....+- ...+--.+++|.|.|++||+... ...|.+|.-++-..-.-.++.......|..+.|+.++..
T Consensus 240 RVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 240 RVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEI 318 (928)
T ss_pred EEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCE
Confidence 999965 5544333 23344457899999999998765 345888876654322222222234567999999999999
Q ss_pred EEEe
Q 008356 182 FIDE 185 (568)
Q Consensus 182 Las~ 185 (568)
|+..
T Consensus 319 LAv~ 322 (928)
T PF04762_consen 319 LAVW 322 (928)
T ss_pred EEEE
Confidence 8875
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.01 E-value=2.9e-05 Score=86.16 Aligned_cols=145 Identities=12% Similarity=0.177 Sum_probs=112.0
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--------------ceeEEeccCCCCeEEEEEcCCCCEEEEEe
Q 008356 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--------------PKVSWLKQHSAPTAGISFSSDDKIIASVG 100 (568)
Q Consensus 35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--------------~~v~~l~~H~~~VtslafsPdg~~LaSgs 100 (568)
+......|+.|+.+.. ++++|+.||.++|..+.+.. ..-+.+.+|...|.-+.|+.+.+.|-+..
T Consensus 12 PnnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3456789999999887 89999999999999885432 11346789999999999999889999999
Q ss_pred CCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 101 LDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 101 ~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
.+|.|.+|-+-.+.-.... ..+..|.+++|+-+|..++....||.|.|=.+++..---+.+. ......+.|++
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g~~l~hv~ws~ 166 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----GQLLAHVLWSE 166 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----hheccceeecc
Confidence 9999999999877644322 3567799999999999999999999999988887532112222 12345678888
Q ss_pred CCCeEEE
Q 008356 178 AKPVFID 184 (568)
Q Consensus 178 dg~~Las 184 (568)
|.+.++.
T Consensus 167 D~~~~Lf 173 (1189)
T KOG2041|consen 167 DLEQALF 173 (1189)
T ss_pred cHHHHHh
Confidence 7655443
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.00 E-value=0.0002 Score=85.23 Aligned_cols=173 Identities=17% Similarity=0.209 Sum_probs=111.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECC---------------C--------CceeEEeeC-----------------------
Q 008356 1 MYNCKDEHLASISLSGDLILHNLA---------------S--------GAKAAELKD----------------------- 34 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~---------------t--------g~~v~~l~~----------------------- 34 (568)
+||||++.|+....+|+|.+..-. . |+...+|++
T Consensus 127 ~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~ 206 (928)
T PF04762_consen 127 SWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKL 206 (928)
T ss_pred EECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcc
Confidence 599999999999999998887521 0 111112211
Q ss_pred -CCCCcEEEEEEccCCCeEEEEEeC---C---CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeC---CCe
Q 008356 35 -PNEQVLRVLDYSRNSRHLLVTAGD---D---GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGL---DKK 104 (568)
Q Consensus 35 -~h~~~Vs~Lafspdg~~lLaTgs~---D---GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~---DGt 104 (568)
.....+ .|.|..||. +|++.+- . ..++||+-++. .......-.+--.+++|-|.|++|++... ...
T Consensus 207 s~dd~~~-~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 207 SWDDGRV-RISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred ccCCCce-EEEECCCCc-EEEEEEEEcCCCceeEEEEECCCce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence 011233 488999998 6766653 3 57999997632 22223333344567899999999998874 345
Q ss_pred EEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356 105 LYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (568)
Q Consensus 105 V~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg 179 (568)
|.+|.- +|..-..| .....|..++|+.|+.+||+...|. |.+|-..+..--++..-.+.....+..+.|+|..
T Consensus 283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 777763 33333333 2456799999999999999988665 9999988764222222222334455669999964
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=4e-05 Score=82.92 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=102.6
Q ss_pred CCCEEEEEECCCcEEEEECCC-C------ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee--E
Q 008356 5 KDEHLASISLSGDLILHNLAS-G------AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV--S 75 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~t-g------~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v--~ 75 (568)
+.+-+++++.|.+|++|.++. + .+..+++. |+..|.++.|..+-+ . .++.||-|++||.--+.... .
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr-~--i~ScD~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLR-S--IASCDGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccc-e--eeeccCcceeecccccchhHhhh
Confidence 346688999999999999863 2 13445555 778899999998866 3 44678999999974443222 1
Q ss_pred EeccCCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEECCCCceeeEee------cCCCeEEEEEecCCCEEEEEEcCCeE
Q 008356 76 WLKQHSAPTAGISFSS--DDKII-ASVGLDKKLYTYDPGSRRPSSCIT------YEAPFSSLAFIDDDWILTAGTSNGRV 146 (568)
Q Consensus 76 ~l~~H~~~VtslafsP--dg~~L-aSgs~DGtV~IWDlrt~~~v~~~~------h~~~ItsLafsPdg~~LasGs~DG~V 146 (568)
.-..|. .+..+...+ +...+ +-|+...+|+++|-|..+....+. ....+++++..+.|++++++-.+|.|
T Consensus 822 dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci 900 (1034)
T KOG4190|consen 822 DAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI 900 (1034)
T ss_pred cCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE
Confidence 112222 233333334 23333 334678899999999877654442 33568999999999999999999999
Q ss_pred EEEECCCCC
Q 008356 147 VFYDIRGKP 155 (568)
Q Consensus 147 ~VWDlrt~~ 155 (568)
.+.|.|+++
T Consensus 901 ~~LDaR~G~ 909 (1034)
T KOG4190|consen 901 AILDARNGK 909 (1034)
T ss_pred EEEecCCCc
Confidence 999999983
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.99 E-value=0.0017 Score=67.46 Aligned_cols=198 Identities=16% Similarity=0.154 Sum_probs=133.1
Q ss_pred ccC-CCCEEEEEECCCc-EEEEECCCCceeEEeeCCCCCcE-EEEEEccCCCeEEEEEe-----CCCeEEEEECCCCCce
Q 008356 2 YNC-KDEHLASISLSGD-LILHNLASGAKAAELKDPNEQVL-RVLDYSRNSRHLLVTAG-----DDGTLHLWDTTGRSPK 73 (568)
Q Consensus 2 fSp-dG~~LasGs~DG~-V~VWDl~tg~~v~~l~~~h~~~V-s~Lafspdg~~lLaTgs-----~DGtV~VWDl~t~~~~ 73 (568)
.+| ....++.+-.-|+ ..+||..+++....+......-. -.-.|+++|+ +|++.- ..|.|-|||....-..
T Consensus 12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~r 90 (305)
T PF07433_consen 12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR-LLYTTENDYETGRGVIGVYDAARGYRR 90 (305)
T ss_pred eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC-EEEEeccccCCCcEEEEEEECcCCcEE
Confidence 467 4455666666664 77899999998877765322211 1357999999 566543 3478999999855556
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCceeeEee-----cCCCeEEEEE
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGL------------------DKKLYTYDPGSRRPSSCIT-----YEAPFSSLAF 130 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~------------------DGtV~IWDlrt~~~v~~~~-----h~~~ItsLaf 130 (568)
+..+..|.-....+.+.||++.|+++.. +-.|.+.|.++++.+.... |.-.|+.+++
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 7788888877888999999988776631 2257777888888776542 5567999999
Q ss_pred ecCCCEEEEEEcCCe-------EEEEECCCCCCceEEEee-----cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356 131 IDDDWILTAGTSNGR-------VVFYDIRGKPQPLTVLRA-----CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (568)
Q Consensus 131 sPdg~~LasGs~DG~-------V~VWDlrt~~~~v~~l~~-----~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s 198 (568)
.++|..++..-..|. |-+++.... ...+.. ..-.+.|-+|+++.++.+++. ++-
T Consensus 171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-----------tsP 236 (305)
T PF07433_consen 171 DGDGTVAFAMQYQGDPGDAPPLVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-----------TSP 236 (305)
T ss_pred cCCCcEEEEEecCCCCCccCCeEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEE-----------ECC
Confidence 999988777665543 445544432 122221 123466888999887655533 334
Q ss_pred CCCcEEcCCCCCCCcc
Q 008356 199 VGDSILMPDPLPSVTT 214 (568)
Q Consensus 199 ~Dg~V~VWDlr~~~~~ 214 (568)
..+.+.+||.......
T Consensus 237 rGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLL 252 (305)
T ss_pred CCCEEEEEECCCCCEe
Confidence 5788889987765543
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00017 Score=81.44 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=99.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
.+++|+.|..+|.|++++.. +.. ..... |... ..+|. ++++|+.||+|.|-.+.+... ........++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~-~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~--~~~~df~rpi 115 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQ-GNP-KTNFD-HSSS------ILEGE-YVASCSDDGKVVIGSLFTDDE--ITQYDFKRPI 115 (846)
T ss_pred hcceeeeccccceEEEEecC-Ccc-ccccc-cccc------ccCCc-eEEEecCCCcEEEeeccCCcc--ceeEecCCcc
Confidence 36789999999999999963 443 23322 2222 55787 899999999999999876653 2223456789
Q ss_pred EEEEEcCC-----CCEEEEEeCCCeEEEEECC---CCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 85 AGISFSSD-----DKIIASVGLDKKLYTYDPG---SRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 85 tslafsPd-----g~~LaSgs~DGtV~IWDlr---t~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
.+++++|+ .+.+++||..| |.++.-+ ....+......++|.++.|. |+++|=+..+| |+|||+....
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence 99999997 57899999999 7777533 22223233578899999998 77888887776 9999998764
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.95 E-value=2.8e-05 Score=55.00 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=34.8
Q ss_pred eeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356 73 KVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (568)
Q Consensus 73 ~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD 109 (568)
.+..+.+|...|++|+|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3677899999999999999999999999999999998
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.93 E-value=0.0026 Score=67.78 Aligned_cols=143 Identities=6% Similarity=0.027 Sum_probs=97.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe---------CCCeEEEEECCCC
Q 008356 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG---------DDGTLHLWDTTGR 70 (568)
Q Consensus 5 dG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs---------~DGtV~VWDl~t~ 70 (568)
++..+++-... +.|.+.|..+++.+..+....... .+ ++|+++.++++.. ++..|.+||..+.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 34445544333 899999999999998888644433 34 9999997777777 7899999999988
Q ss_pred CceeEEeccC-------CCCeEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE
Q 008356 71 SPKVSWLKQH-------SAPTAGISFSSDDKIIASVG-L-DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 71 ~~~v~~l~~H-------~~~VtslafsPdg~~LaSgs-~-DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs 141 (568)
+. +..+..- ......++++|||++|+... . +..|.++|+.+++.+..+...+...-.....+..++ -+
T Consensus 88 ~~-~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~--~~ 164 (352)
T TIGR02658 88 LP-IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM--HC 164 (352)
T ss_pred cE-EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE--Ee
Confidence 74 3333321 22345789999999998776 3 689999999999999888654433333333333332 23
Q ss_pred cCCeEEEEECCC
Q 008356 142 SNGRVVFYDIRG 153 (568)
Q Consensus 142 ~DG~V~VWDlrt 153 (568)
.||......+..
T Consensus 165 ~Dg~~~~v~~d~ 176 (352)
T TIGR02658 165 RDGSLAKVGYGT 176 (352)
T ss_pred ecCceEEEEecC
Confidence 455555544443
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.0013 Score=64.77 Aligned_cols=185 Identities=15% Similarity=0.076 Sum_probs=110.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC---
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS--- 81 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~--- 81 (568)
++++++++..++.|+.||..+|+.+..+..... ..... ...+ . .++.+..++.|+.+|..+++..........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~-~-~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDG-G-RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEET-T-EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecc-c-ccccccceeeeEecccCCcceeeeecccccccc
Confidence 577888888999999999999998887775221 11111 2223 3 466677888999999988885433222111
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC-C----------eEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA-P----------FSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~-~----------ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
..........++..++.+..++.|..+|+++|+.+....... . +..-....++ .++++..++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d 189 (238)
T PF13360_consen 111 GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVD 189 (238)
T ss_dssp STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence 112222233348888888889999999999999887764322 1 1122222244 777777777644449
Q ss_pred CCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 151 IRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 151 lrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+.+++.. .... ...+..+ .... ++.+++.. .++.|..||++...
T Consensus 190 ~~tg~~~---w~~~--~~~~~~~-~~~~-----------~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 190 LATGEKL---WSKP--ISGIYSL-PSVD-----------GGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp TTTTEEE---EEEC--SS-ECEC-EECC-----------CTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCCCCEE---EEec--CCCccCC-ceee-----------CCEEEEEe-CCCEEEEEECCCCC
Confidence 9888422 2211 1222221 1122 33344444 68999999987654
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.90 E-value=0.00099 Score=72.08 Aligned_cols=193 Identities=13% Similarity=0.152 Sum_probs=127.6
Q ss_pred CccCCCCEEEEEECC---------------CcEEEEECCCCceeEEeeCCCCC--cEEEEEEccCCCeEEEEEeCCCeEE
Q 008356 1 MYNCKDEHLASISLS---------------GDLILHNLASGAKAAELKDPNEQ--VLRVLDYSRNSRHLLVTAGDDGTLH 63 (568)
Q Consensus 1 afSpdG~~LasGs~D---------------G~V~VWDl~tg~~v~~l~~~h~~--~Vs~Lafspdg~~lLaTgs~DGtV~ 63 (568)
.|+|++++|.+=... +.+.+||..+|..+..+...... .-..+.|+-++. +++-- -...++
T Consensus 78 ~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~ 155 (561)
T COG5354 78 DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK-YVARV-VGSSLY 155 (561)
T ss_pred ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecch-hhhhh-ccCeEE
Confidence 378999999885433 35999999999999888764433 233678988876 44332 345699
Q ss_pred EEECCCCCceeEEecc-CCCCeEEEEEcCC--CCEEEE-----EeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCC
Q 008356 64 LWDTTGRSPKVSWLKQ-HSAPTAGISFSSD--DKIIAS-----VGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDD 134 (568)
Q Consensus 64 VWDl~t~~~~v~~l~~-H~~~VtslafsPd--g~~LaS-----gs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg 134 (568)
|+++..+-. ..-+.. -...|....|+|. +..|+. .+.++.+++|.+..+..+.... .+-.-..+.|++.|
T Consensus 156 i~e~t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 156 IHEITDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred EEecCCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence 999733221 111111 1356888899994 445553 3567889999998776655442 23334568899999
Q ss_pred CEEEEEEc-----------CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcE
Q 008356 135 WILTAGTS-----------NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSI 203 (568)
Q Consensus 135 ~~LasGs~-----------DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V 203 (568)
++|++--. ...++|++++....++.. ...++|..++|.|.++.+ .+++|-++..+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhdf~W~p~S~~F----------~vi~g~~pa~~ 300 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHDFTWEPLSSRF----------AVISGYMPASV 300 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec----cccccceeeeecccCCce----------eEEecccccce
Confidence 88775311 345889999866544332 346899999999975444 44555667788
Q ss_pred EcCCCCC
Q 008356 204 LMPDPLP 210 (568)
Q Consensus 204 ~VWDlr~ 210 (568)
.++|++.
T Consensus 301 s~~~lr~ 307 (561)
T COG5354 301 SVFDLRG 307 (561)
T ss_pred eeccccc
Confidence 8888764
No 304
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.90 E-value=0.0014 Score=69.94 Aligned_cols=142 Identities=12% Similarity=0.163 Sum_probs=95.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
.++++++++.+|.|+.+|..+|+.+..+.... ........ ++. .++.++.++.|+.+|..+++.. +.......+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v--~~~-~v~v~~~~g~l~ald~~tG~~~--W~~~~~~~~ 137 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGA--DGG-LVFVGTEKGEVIALDAEDGKEL--WRAKLSSEV 137 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEE--cCC-EEEEEcCCCEEEEEECCCCcEe--eeeccCcee
Confidence 36678889899999999999999887665422 22222222 344 5778889999999999888732 222222323
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeE------EEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFS------SLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~It------sLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
.+.-.. .+..++.+..++.|+.||.++++.+..+....... +.... +..++++..++.|..+|+++++
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 221111 35677778889999999999999877764433221 11222 3477888889999999998875
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.84 E-value=0.0053 Score=63.84 Aligned_cols=171 Identities=14% Similarity=0.135 Sum_probs=107.2
Q ss_pred CccCCCCEEEEEEC-----CCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe------CCCe-------
Q 008356 1 MYNCKDEHLASISL-----SGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDGT------- 61 (568)
Q Consensus 1 afSpdG~~LasGs~-----DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs------~DGt------- 61 (568)
.|++||++|++.-. .|.|-|||.. .-+.+.++..+--+ -..+.+.|+++.+++.-+ +.|.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG-PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG-PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC-hhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 48999999998644 4889999998 66778888863333 356889999974443311 1222
Q ss_pred ----EEEEECCCCCcee-EEe--ccCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCceeeEe--------
Q 008356 62 ----LHLWDTTGRSPKV-SWL--KQHSAPTAGISFSSDDKIIASVGLDK-------KLYTYDPGSRRPSSCI-------- 119 (568)
Q Consensus 62 ----V~VWDl~t~~~~v-~~l--~~H~~~VtslafsPdg~~LaSgs~DG-------tV~IWDlrt~~~v~~~-------- 119 (568)
+...|..+++... ..+ .-|...|.-+++.++|..++..-..| -|.+++... .+..+
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHH
Confidence 3334444444221 123 23666789999998887777665444 244444332 22222
Q ss_pred ecCCCeEEEEEecCCCEEEEEE-cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356 120 TYEAPFSSLAFIDDDWILTAGT-SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (568)
Q Consensus 120 ~h~~~ItsLafsPdg~~LasGs-~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg 179 (568)
...+.|-+|+++.++.++++.+ .-+.+.+||..++. .+... .-..+..++-.+++
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~----~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSV----PLPDACGVAPTDDG 269 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-Eeecc----ccCceeeeeecCCc
Confidence 2457799999999998876655 67789999999873 22221 22345566655544
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.83 E-value=5.6e-05 Score=53.46 Aligned_cols=38 Identities=18% Similarity=0.539 Sum_probs=34.0
Q ss_pred ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356 27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (568)
Q Consensus 27 ~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD 66 (568)
+++..+++ |...|.+|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 56778886 888999999999987 899999999999997
No 307
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=4.9e-06 Score=91.43 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=127.7
Q ss_pred CCEEEEEECCCcEEEEECCCCcee-EEeeCCCCCcEEEEEEccCCCeEEEEEe----CCCeEEEEECCCC--Cce--eEE
Q 008356 6 DEHLASISLSGDLILHNLASGAKA-AELKDPNEQVLRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGR--SPK--VSW 76 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v-~~l~~~h~~~Vs~Lafspdg~~lLaTgs----~DGtV~VWDl~t~--~~~--v~~ 76 (568)
...+++|..+|.|.+-.+.....- .++...+...+++++|++-..+.||+|- .|-.+.|||+... .++ ...
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f 149 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF 149 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc
Confidence 346788889999999887644332 5555567788999999997666777774 3567999999765 211 111
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEec-CCCEEEEEEcCCeEEEEE-CCCC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFID-DDWILTAGTSNGRVVFYD-IRGK 154 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsP-dg~~LasGs~DG~V~VWD-lrt~ 154 (568)
..+.....+.++|..+.+++++|...+.+.++|+|........-....+..+...| .+++++.-. ||.|.+|| .++-
T Consensus 150 s~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rni 228 (783)
T KOG1008|consen 150 SSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNI 228 (783)
T ss_pred ccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhh
Confidence 12244556789999899999999999999999998432221111233455666777 566776655 99999999 6665
Q ss_pred CCceEEEeec--CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCC
Q 008356 155 PQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPS 211 (568)
Q Consensus 155 ~~~v~~l~~~--~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~ 211 (568)
+.++..+... .....+..++|.|.. .+.+.+..-..+.|+++|++.-
T Consensus 229 enpl~~i~~~~N~~~~~l~~~aycPtr----------tglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 229 ENPLQIILRNENKKPKQLFALAYCPTR----------TGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ccHHHHHhhCCCCcccceeeEEeccCC----------cchhhhhccCcceEEEeccccc
Confidence 5554433211 111248899999952 2222222233678889987653
No 308
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=0.0025 Score=71.83 Aligned_cols=208 Identities=12% Similarity=0.031 Sum_probs=126.0
Q ss_pred cCCCCEEEEEE-CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEE--e----------------------
Q 008356 3 NCKDEHLASIS-LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTA--G---------------------- 57 (568)
Q Consensus 3 SpdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTg--s---------------------- 57 (568)
.+||+.+...+ ..+.+.+.|.++.+...++.. .+....++++++++.+++++ +
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEe--CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 45676554332 346778888887776666653 22345567788887444443 1
Q ss_pred ---------------CCCeEEEEECCC----CCceeEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce--
Q 008356 58 ---------------DDGTLHLWDTTG----RSPKVSWLKQHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRP-- 115 (568)
Q Consensus 58 ---------------~DGtV~VWDl~t----~~~~v~~l~~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~-- 115 (568)
.++.|.+.|..+ ... +.....-......++++||++++++++ .+.+|.++|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~-v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSA-LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcc-eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 124466777655 221 222223445578899999999987766 588999999987542
Q ss_pred ----------eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------CC---ceEEEee---cCCCCCeeEE
Q 008356 116 ----------SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------PQ---PLTVLRA---CSSSEAVSSL 173 (568)
Q Consensus 116 ----------v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~------~~---~v~~l~~---~~h~~~VtsL 173 (568)
+..+.........+|.++|+...+-.-|..|..||+... ++ .+..+.. .+|......=
T Consensus 358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 333344555667889999988888889999999999751 11 1222221 1222222222
Q ss_pred EEccCCCeEEEecc------------CCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 174 CWQRAKPVFIDETT------------CKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 174 afspdg~~Las~s~------------ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
.-.++|+||++... ......|+--+.|....|+|.-.+..
T Consensus 438 t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~E 489 (635)
T PRK02888 438 TKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAE 489 (635)
T ss_pred cCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCC
Confidence 33678888876532 22333556666677777777655443
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00076 Score=71.18 Aligned_cols=135 Identities=12% Similarity=0.063 Sum_probs=88.5
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc
Q 008356 1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ 79 (568)
Q Consensus 1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~ 79 (568)
+|+|..+ +|..++.+.+|.|.|+++...+..+..+ ..+.+++|+.++.++|++|..+|.|.|||++..+..+..+.+
T Consensus 200 afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 200 AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred ccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhh
Confidence 5788776 7888999999999999998888888763 567778999999999999999999999999876543332222
Q ss_pred --CCCCeEEEEEc------CCCCEEEEEeCCCeEEEEECCC----CceeeEeecCCCeEEEEEecCCCEEEE
Q 008356 80 --HSAPTAGISFS------SDDKIIASVGLDKKLYTYDPGS----RRPSSCITYEAPFSSLAFIDDDWILTA 139 (568)
Q Consensus 80 --H~~~Vtslafs------Pdg~~LaSgs~DGtV~IWDlrt----~~~v~~~~h~~~ItsLafsPdg~~Las 139 (568)
...+|..++.- +.+.+++....+ +..|.+.- .-++..+...+.+.++.+++-.+.+++
T Consensus 278 ~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 278 NVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLL 347 (463)
T ss_pred hhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEE
Confidence 22334443332 233334333332 45565532 222333345566667777764444444
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.001 Score=75.27 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=105.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-----CCeEEEEEeCCCeEEEEECCCCCce-eEEec
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----SRHLLVTAGDDGTLHLWDTTGRSPK-VSWLK 78 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-----g~~lLaTgs~DGtV~VWDl~t~~~~-v~~l~ 78 (568)
+|+++++|+.||+|.|..+.+.+...++. ....+..|+++|+ .+ .+++|+.-| +.++.-.--... ...+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk-~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSK-QFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhh-heeecCcce-EEEehhhhhcCccceeee
Confidence 68999999999999999998888877766 4567888999998 33 689999999 888875321111 12456
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC-CC------eEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE-AP------FSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~-~~------ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
...++|.++.|. |++|+-++.+| |++||+.+++.+..+... .. ...+.|.++. .|+. +...+|+|..+
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVI-GW~d~v~i~~I 232 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVI-GWGDSVKICSI 232 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEE-ecCCeEEEEEE
Confidence 678899999998 88999999888 999999998887766321 22 3356776653 4444 45567999988
Q ss_pred CC
Q 008356 152 RG 153 (568)
Q Consensus 152 rt 153 (568)
+.
T Consensus 233 ~~ 234 (846)
T KOG2066|consen 233 KK 234 (846)
T ss_pred ec
Confidence 83
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0006 Score=76.75 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=131.1
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCe
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp---dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
+||++...|.|.|||...+..+..+.. +.+.+.+++|-+ +.+++|++-....+|.+|+.++++. ...........
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEIL 158 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccccCCcce
Confidence 577788899999999998888888874 667778888865 3446788878889999999998873 33333334557
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CceeeEe-ecCC-------------------------CeEEEEE
Q 008356 85 AGISFSS-DDKIIASVGLDKKLYTYDPGS-------RRPSSCI-TYEA-------------------------PFSSLAF 130 (568)
Q Consensus 85 tslafsP-dg~~LaSgs~DGtV~IWDlrt-------~~~v~~~-~h~~-------------------------~ItsLaf 130 (568)
.|+.+.| |.++++.-+..|.|.+.+.-. ++.+++. .|.. .+-.++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 7899999 888888888888888776532 2222221 1111 0224567
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 131 IDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 131 sPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
+|.-+.++.......+.|+|++-. +++.++.. ..+.+.=+.|-|++ ....|++...||.+.+|--+
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvpi--er~~akfv~vlP~~----------~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVPI--ERGGAKFVDVLPDP----------RRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhh-ceeEEEEe--ccCCcceeEeccCC----------CcceEEEEecCCeEEEEEee
Confidence 887666666677888999999876 34444442 33555667777753 55677888889999999543
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.75 E-value=0.0021 Score=63.13 Aligned_cols=137 Identities=19% Similarity=0.102 Sum_probs=89.4
Q ss_pred CCCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC
Q 008356 14 LSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD 92 (568)
Q Consensus 14 ~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd 92 (568)
.+|.|..||..+|+.+....... .....+..+ .++. .+++++.++.|+.||..+++...+. . ....+.... ..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~-~-~~~~~~~~~-~~~ 75 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRF-D-LPGPISGAP-VVD 75 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEE-E-CSSCGGSGE-EEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEe-e-cccccccee-eec
Confidence 37899999999999988876421 122221122 2344 5777789999999999888733222 2 122222211 224
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeEe-ecC----CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 93 DKIIASVGLDKKLYTYDPGSRRPSSCI-TYE----APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 93 g~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~----~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
+..++.+..++.|+.+|.++++.+... ... .....+....++..++++..++.|..+|+++++
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 666777778889999999999998874 221 112233333348889999999999999999884
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.74 E-value=0.0002 Score=73.24 Aligned_cols=125 Identities=13% Similarity=0.194 Sum_probs=91.1
Q ss_pred CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC--CceeEEeccCC-----CCeEEEEEcC-CCCEEEEEeCCCeEE
Q 008356 35 PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR--SPKVSWLKQHS-----APTAGISFSS-DDKIIASVGLDKKLY 106 (568)
Q Consensus 35 ~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~--~~~v~~l~~H~-----~~VtslafsP-dg~~LaSgs~DGtV~ 106 (568)
.|...|..+.|+.+.+ .+ ..++|=.|.+|++.-. .-.+.-++.|. .-|++..|+| ..+.+...+..|.|+
T Consensus 170 aH~yhiNSiS~NsD~e-t~-lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 170 AHPYHINSISFNSDKE-TL-LSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cceeEeeeeeecCchh-ee-eeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3555677888888766 34 4467889999998532 22244455554 4589999999 778888889999999
Q ss_pred EEECCCCcee----eEe-------------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe
Q 008356 107 TYDPGSRRPS----SCI-------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR 162 (568)
Q Consensus 107 IWDlrt~~~v----~~~-------------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~ 162 (568)
+-|+|..... ..+ .--..|..+.|+++|+++++-.. -+|+|||.+..+.|++.+.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 9999853221 111 12345889999999999987765 5799999999988888775
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.72 E-value=0.0026 Score=67.83 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=90.5
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCCCC----------cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPNEQ----------VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~----------~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~ 76 (568)
..++.+..+|.|..+|+++|+.+.+....... ......+ .+. .++.++.+|.++.||..+++.. +
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~tG~~~--W 265 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLRSGRVL--W 265 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECCCCcEE--E
Confidence 46777888899999999999876544321100 0011111 133 5777889999999999887632 2
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCC-eEEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAP-FSSLAFIDDDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~-ItsLafsPdg~~LasGs~DG~V~VWDlrt~ 154 (568)
...... ..... ..+.+++.++.||.|+.+|..+++.+... ..... ...... .+..|++++.+|.|+++|.+++
T Consensus 266 ~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 266 KRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred eeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC
Confidence 222211 11122 24678888899999999999999877655 22222 222222 3678999999999999999887
Q ss_pred C
Q 008356 155 P 155 (568)
Q Consensus 155 ~ 155 (568)
+
T Consensus 341 ~ 341 (377)
T TIGR03300 341 S 341 (377)
T ss_pred C
Confidence 4
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.69 E-value=0.00028 Score=80.59 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=107.4
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---------CCeEEEEECCCCCcee
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---------DGTLHLWDTTGRSPKV 74 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---------DGtV~VWDl~t~~~~v 74 (568)
.+++++.+|...|+|.+-|..+.+.+.++.. |.+.|.+ |+-.|+ +|++++. |.-|+|||++.... +
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSD--fDv~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmra-l 259 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISD--FDVQGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRA-L 259 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeec-cccceee--eeccCC-eEEEeecccccccccccchhhhhhhhhhhc-c
Confidence 3578899999999999999999999999997 7777875 455565 7777764 44589999976552 2
Q ss_pred EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE---CCCCc-eeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356 75 SWLKQHSAPTAGISFSS-DDKIIASVGLDKKLYTYD---PGSRR-PSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (568)
Q Consensus 75 ~~l~~H~~~VtslafsP-dg~~LaSgs~DGtV~IWD---lrt~~-~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~V 148 (568)
.-+.-+.+ ..-+.|+| -...+++++..|...+.| +.+.. -+..+ .....|..++++++++.++.|..+|.|.+
T Consensus 260 ~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 260 SPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred CCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 22222333 25577888 567788999999999999 33331 12222 45556999999999999999999999999
Q ss_pred EECC
Q 008356 149 YDIR 152 (568)
Q Consensus 149 WDlr 152 (568)
|.-+
T Consensus 339 wa~~ 342 (1118)
T KOG1275|consen 339 WADR 342 (1118)
T ss_pred ecCC
Confidence 9844
No 316
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.0009 Score=75.39 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=113.1
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccC-----------CCeEEEEEeCCCeEEEEECCCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRN-----------SRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspd-----------g~~lLaTgs~DGtV~VWDl~t~ 70 (568)
|+|.| +||.|+ ...|.|-|..+-+.+..+.. |...|+.+.|.|. ..-+|+++...|.|.+||....
T Consensus 23 w~~~G-LiAygs-hslV~VVDs~s~q~iqsie~-h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 23 WSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL-HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred cCccc-eEEEec-CceEEEEehhhhhhhhcccc-CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 45544 566665 45789999989898888885 6678888999873 2235778888999999999877
Q ss_pred CceeEEeccCCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCceeeEeecCCC-eEEEEEec-CCCEEEEEEcCC
Q 008356 71 SPKVSWLKQHSAPTAGISFSS---DD-KIIASVGLDKKLYTYDPGSRRPSSCITYEAP-FSSLAFID-DDWILTAGTSNG 144 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsP---dg-~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~-ItsLafsP-dg~~LasGs~DG 144 (568)
. .+.++..|..+|.+++|-+ +. ..|+.-....+|.+|+..+|+.+........ ..|+.+.| |.+.+..-+..|
T Consensus 100 s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g 178 (1062)
T KOG1912|consen 100 S-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG 178 (1062)
T ss_pred h-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence 6 3667888899999999987 33 4677777888999999999998887755444 55689998 666777767778
Q ss_pred eEEEEECC
Q 008356 145 RVVFYDIR 152 (568)
Q Consensus 145 ~V~VWDlr 152 (568)
.|.+.+.-
T Consensus 179 ~vl~~~~l 186 (1062)
T KOG1912|consen 179 FVLSCKDL 186 (1062)
T ss_pred eEEEEecc
Confidence 88777664
No 317
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.0023 Score=67.00 Aligned_cols=178 Identities=12% Similarity=0.172 Sum_probs=109.7
Q ss_pred CcEEEEECCCCceeEEeeCCCCCcEEEEEEcc---C---CCeEEEEEeC----------CCeEEEEECCCC-----Ccee
Q 008356 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSR---N---SRHLLVTAGD----------DGTLHLWDTTGR-----SPKV 74 (568)
Q Consensus 16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp---d---g~~lLaTgs~----------DGtV~VWDl~t~-----~~~v 74 (568)
..|++.|..+.+.+..+.-...+.+.+++... + ...+|+.|.. .|.|.+|++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36899998888877776654566666555433 2 1457776642 289999999874 2222
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEeecCC--CeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 75 SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITYEA--PFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 75 ~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~~h~~--~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
.......++|++++-. +++ |+.+. .+.|++|++...+ ....-.+.. .+.++... ++++++|.....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234457889998877 444 44433 4789999998877 544443433 45555554 669999998888888865
Q ss_pred CCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 152 RGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 152 rt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+.....+..+........++++.|-.++ ..++.+..++.|.++...+
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~------------~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE------------DTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS------------SEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC------------cEEEEEcCCCeEEEEEECC
Confidence 5433323444333345567788777542 2555666688888877653
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.63 E-value=0.0015 Score=72.11 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=79.4
Q ss_pred CCeEEEEEcC-CCCEEEEEe----CCC----eEEEEECCCCcee----eEeecCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 008356 82 APTAGISFSS-DDKIIASVG----LDK----KLYTYDPGSRRPS----SCITYEAPFSSLAFIDDDWILTAGTSNGRVVF 148 (568)
Q Consensus 82 ~~VtslafsP-dg~~LaSgs----~DG----tV~IWDlrt~~~v----~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V 148 (568)
....++.|+- +.+.+.+.. .+| .-++|++...+.. ..+.....+.|++++|+...|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3456778887 666676653 344 2456777655432 23468899999999999999999999999999
Q ss_pred EECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 149 YDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 149 WDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
||...+. .... ...-.++.++|||+|.+++.+ +..|.+.+||+.
T Consensus 286 yD~~~~~---t~~~--ka~~~P~~iaWHp~gai~~V~------------s~qGelQ~FD~A 329 (545)
T PF11768_consen 286 YDTTRGV---TLLA--KAEFIPTLIAWHPDGAIFVVG------------SEQGELQCFDMA 329 (545)
T ss_pred EEcCCCe---eeee--eecccceEEEEcCCCcEEEEE------------cCCceEEEEEee
Confidence 9998652 2222 234557889999976655554 457999999974
No 319
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.0014 Score=71.63 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=114.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe-----------CCCeEEEEECCCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG-----------DDGTLHLWDTTGR 70 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs-----------~DGtV~VWDl~t~ 70 (568)
|||.|.||++-...| |.+|--.+-..++.+. |.+ |.-+.|+|+.+ +|+|-+ +...++|||+.++
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~-Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPG-VQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCC-ceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence 899999999987766 8899876666666665 544 56689999998 788753 2257999999988
Q ss_pred CceeEEecc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEEEEc----
Q 008356 71 SPKVSWLKQ---HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTAGTS---- 142 (568)
Q Consensus 71 ~~~v~~l~~---H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~LasGs~---- 142 (568)
..+ +.+.. ....---+.|+.|+++++....| .|.||+...-.++.... .-..|....|+|.+++||.=..
T Consensus 293 ~lk-rsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLK-RSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chh-cceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 743 22222 22222346799999999988775 48999876633322111 3356889999999888876432
Q ss_pred -CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 143 -NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 143 -DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
-.++.|-.+-.+. .++..+ -|.-.=..+.|..+|.+|+.-
T Consensus 371 ~parvtL~evPs~~-~iRt~n--lfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 371 IPARVTLMEVPSKR-EIRTKN--LFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred CcceEEEEecCccc-eeeecc--ceeeeccEEEeccCCcEEEEE
Confidence 1246666655542 222222 122233457888888888754
No 320
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00056 Score=72.17 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=86.8
Q ss_pred EEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecC-CCEEEE
Q 008356 62 LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-IIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD-DWILTA 139 (568)
Q Consensus 62 V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd-g~~Las 139 (568)
|++.+-.+-+. ...+..|...|.+++|+|..+ ++..++.+.+|+|.|+++...+..+.....+++++|+-| .++|++
T Consensus 175 v~~l~~~~fks-sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKS-SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcch-hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEE
Confidence 44444444332 346677888999999999555 788999999999999999988888876689999999986 567888
Q ss_pred EEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 140 GTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 140 Gs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
|..+|.|.|||+|....++..+.......+|..++.-+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccC
Confidence 99999999999998766555544322345565555444
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.59 E-value=0.0032 Score=74.21 Aligned_cols=179 Identities=18% Similarity=0.240 Sum_probs=115.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC----CCCce----
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----GRSPK---- 73 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~----t~~~~---- 73 (568)
|.-+.+.|+.+...|.|.+-|.++.... +-+.....|.+++|+||++ +++....+++|.+-+-. ..++.
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee-~l~liT~~~tll~mT~~f~~i~E~~L~~d~ 152 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEE-LLALITGRQTLLFMTKDFEPIAEKPLDADD 152 (1265)
T ss_pred EecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCc-EEEEEeCCcEEEEEeccccchhcccccccc
Confidence 3446677888899999999988766532 3333457789999999998 77777777777665420 00000
Q ss_pred --------------eEEeccC---------------------CCCeEEEEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 008356 74 --------------VSWLKQH---------------------SAPTAGISFSSDDKIIASV-----GLDKKLYTYDPGSR 113 (568)
Q Consensus 74 --------------v~~l~~H---------------------~~~VtslafsPdg~~LaSg-----s~DGtV~IWDlrt~ 113 (568)
...+++. ...=+.|.|--||.++++. ...+.|++||.+ +
T Consensus 153 ~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g 231 (1265)
T KOG1920|consen 153 ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G 231 (1265)
T ss_pred ccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c
Confidence 0111110 1112358899999999873 233799999987 4
Q ss_pred ceeeEe-ecCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356 114 RPSSCI-TYEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 114 ~~v~~~-~h~~~ItsLafsPdg~~LasGs---~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las 184 (568)
..-..- ...+.-.+++|-|.|.++++-. .|+.|.+|.-++-..-.-.+........|..++|+.++..|+.
T Consensus 232 ~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 232 ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 332222 3445566899999999998854 3567999987764322222322233344899999998877765
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.0024 Score=68.37 Aligned_cols=201 Identities=9% Similarity=0.065 Sum_probs=133.3
Q ss_pred cCCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCC-ceeEEe
Q 008356 3 NCKDEHLASISL-SGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRS-PKVSWL 77 (568)
Q Consensus 3 SpdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~-~~v~~l 77 (568)
+-+|.++.+++. |..++++|+++-..+.-++... .+.+. +..++... .+.+...+++.+.|+|-.... +.....
T Consensus 62 S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 62 SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred cccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 456777888777 9999999998766553333211 12222 12222211 233444578999999986554 334555
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------CceeeE----------eecCCCeEEEEEecCCCEEEEEE
Q 008356 78 KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS------RRPSSC----------ITYEAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 78 ~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt------~~~v~~----------~~h~~~ItsLafsPdg~~LasGs 141 (568)
.-|..+|.++.+++-+..+++....|.|..|.... .+.... ...+....++.|+|++..+.+-.
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 67999999999999999999999999999998773 111111 12456788999999999999999
Q ss_pred cCCeEEEEECCCCCCceEEEeec------------------------------CC-CCCeeEEEEccCCCeEEEeccCCC
Q 008356 142 SNGRVVFYDIRGKPQPLTVLRAC------------------------------SS-SEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 142 ~DG~V~VWDlrt~~~~v~~l~~~------------------------------~h-~~~VtsLafspdg~~Las~s~ssd 190 (568)
.|..|++++.++++. ++.+... .| ...-+.++|+..|++|+.+. --
T Consensus 221 ~DrkVR~F~~KtGkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t--~~ 297 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT--IL 297 (558)
T ss_pred cccEEEEEEeccchh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec--ce
Confidence 999999999987531 1111000 01 12346688888898888762 24
Q ss_pred CeEEEEecCCCcEEcCC
Q 008356 191 ETALLGGAVGDSILMPD 207 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWD 207 (568)
+..++.-.....++++-
T Consensus 298 gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 298 GIKVINLDTNTVVRILG 314 (558)
T ss_pred eEEEEEeecCeEEEEec
Confidence 55555555566666653
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00074 Score=75.53 Aligned_cols=147 Identities=16% Similarity=0.205 Sum_probs=99.0
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee-----EE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV-----SW 76 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v-----~~ 76 (568)
+...+++|+.|..-|.|++|+-..++....-.......+..+..+++.. ++|.|+..|.|.++-++...+.. ..
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 3456789999999999999997665543322222334455566777665 88999999999999986643221 11
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-----PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-----~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
-+.|...|++++|++++..+++|...|+|.+-.+.... ...++...+.|..+.+.. .+|++.+-- +..++++
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~-r~~Lc~t 196 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT-RCILCQT 196 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh-hhheeec
Confidence 23478899999999999999999999999988877621 112224567777776652 344443332 2344555
Q ss_pred C
Q 008356 152 R 152 (568)
Q Consensus 152 r 152 (568)
+
T Consensus 197 E 197 (726)
T KOG3621|consen 197 E 197 (726)
T ss_pred c
Confidence 4
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.40 E-value=0.005 Score=71.51 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=93.2
Q ss_pred CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC------eEEEEEeCCCeEEEEECCCCCceeEEe----ccCCCC
Q 008356 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR------HLLVTAGDDGTLHLWDTTGRSPKVSWL----KQHSAP 83 (568)
Q Consensus 14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~------~lLaTgs~DGtV~VWDl~t~~~~v~~l----~~H~~~ 83 (568)
....|+-+|++.|+.+.+.+.+....|. .+.|+.+ .--+.|-.+..|..||.+-...++..- ......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 4578999999999999999985555455 4444321 135677888899999997543222211 123445
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
..|++-..+ .+||+|+.+|.||+||--..+....+ +...+|..|..+.||++|++.+. ..|.|++.
T Consensus 580 Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 677766644 57899999999999994333323333 56889999999999999887665 56777765
No 325
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.055 Score=58.33 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=120.1
Q ss_pred ccCCCCEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEec
Q 008356 2 YNCKDEHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 2 fSpdG~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~ 78 (568)
.++.++.++ ....++.|.+.|..+.+....+.... .-..++++++++++.++-. .++++.+.|-.+...... ..
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~ 157 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP 157 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee
Confidence 456676444 44456899999988777776665433 4456899999986666555 368898888887774333 44
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceee-----EeecCCCeEEEEEecCCCEEEEEEcC---CeEEEE
Q 008356 79 QHSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRRPSS-----CITYEAPFSSLAFIDDDWILTAGTSN---GRVVFY 149 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~~v~-----~~~h~~~ItsLafsPdg~~LasGs~D---G~V~VW 149 (568)
....+ ..+++.|+++.++.+. .++.|.+.|........ .+........+.++++|+++.+.... +.+...
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 43344 8899999999766665 78899999977765553 23344456788999999977765544 589999
Q ss_pred ECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 150 DIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
|............ .+.. ....+.++|+|+++...
T Consensus 237 d~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 237 DTATGNVTATDLP-VGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred eCCCceEEEeccc-cccC-CCCceeECCCCCEEEEE
Confidence 9887632111111 1122 45668889987776554
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.33 E-value=0.021 Score=58.12 Aligned_cols=181 Identities=12% Similarity=0.139 Sum_probs=100.8
Q ss_pred CccCCCC-EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCC--cee---
Q 008356 1 MYNCKDE-HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKV--- 74 (568)
Q Consensus 1 afSpdG~-~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v--- 74 (568)
+|+|+.+ ++++....+.|..++. +|+.++.+.-...+-...|++..++. ++++--.++.+.++++.... ...
T Consensus 28 Ty~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~ 105 (248)
T PF06977_consen 28 TYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDDTTSLDRADV 105 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE----TT--EEEE
T ss_pred EEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEEeccccccchhhc
Confidence 4788766 5556667788888886 68888877654445567888987764 55555568999999983321 111
Q ss_pred EEe-----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---CceeeEe---------ecCCCeEEEEEecC-CCE
Q 008356 75 SWL-----KQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS---RRPSSCI---------TYEAPFSSLAFIDD-DWI 136 (568)
Q Consensus 75 ~~l-----~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt---~~~v~~~---------~h~~~ItsLafsPd-g~~ 136 (568)
..+ ..++..+-.++|++.++.|+.+-+..-..+|.+.. ...+... .....+..++++|. +.+
T Consensus 106 ~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~l 185 (248)
T PF06977_consen 106 QKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHL 185 (248)
T ss_dssp EEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEE
T ss_pred eEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeE
Confidence 111 13456689999999777777776665555665543 2222111 13345889999995 566
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEeecC--C-----CCCeeEEEEccCCCeEEEe
Q 008356 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACS--S-----SEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 137 LasGs~DG~V~VWDlrt~~~~v~~l~~~~--h-----~~~VtsLafspdg~~Las~ 185 (568)
++....+..|.++|.... ++..+.... | -...-.|+|.++|...++.
T Consensus 186 liLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 777778888999995543 444444322 1 1246789999987665544
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.32 E-value=0.011 Score=66.63 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=113.5
Q ss_pred CCCCEEEEEEC-CCcEEEEECCCCceeEEeeCCCCCcEEEEEE-------------------ccCCCeEEEEEeCCCeEE
Q 008356 4 CKDEHLASISL-SGDLILHNLASGAKAAELKDPNEQVLRVLDY-------------------SRNSRHLLVTAGDDGTLH 63 (568)
Q Consensus 4 pdG~~LasGs~-DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Laf-------------------spdg~~lLaTgs~DGtV~ 63 (568)
.||++|..-.+ +..|...++...++-+.+..+....+..++| .++|+.+..+.-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 46788887764 5667777777655544444333333333333 334432222223345566
Q ss_pred EEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe----------------------------------------CCC
Q 008356 64 LWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG----------------------------------------LDK 103 (568)
Q Consensus 64 VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs----------------------------------------~DG 103 (568)
+.|..+.+. ...+.. ......++++++++++++.+ .++
T Consensus 219 vID~etmeV-~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn 296 (635)
T PRK02888 219 AVDAETMEV-AWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGS 296 (635)
T ss_pred EEECccceE-EEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCC
Confidence 666665542 222221 22345567777777776664 234
Q ss_pred eEEEEECCC-----CceeeEeecCCCeEEEEEecCCCEEEEEEc-CCeEEEEECCCCCCce-------EEE-eecCCCCC
Q 008356 104 KLYTYDPGS-----RRPSSCITYEAPFSSLAFIDDDWILTAGTS-NGRVVFYDIRGKPQPL-------TVL-RACSSSEA 169 (568)
Q Consensus 104 tV~IWDlrt-----~~~v~~~~h~~~ItsLafsPdg~~LasGs~-DG~V~VWDlrt~~~~v-------~~l-~~~~h~~~ 169 (568)
.|.++|.++ .+.+..+........+.++|||+++++++. +..|.|+|+...+..+ ..+ ....-...
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG 376 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG 376 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC
Confidence 588888887 456666777888889999999999888664 8999999998754211 111 10011122
Q ss_pred eeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 170 VSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 170 VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
....+|..+| ..+.+--.|..|..||+..
T Consensus 377 PLHTaFDg~G------------~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 377 PLHTAFDGRG------------NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEECCCC------------CEEEeEeecceeEEEehHH
Confidence 2345666544 3444455589999999864
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.28 E-value=0.0037 Score=68.71 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=88.6
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH 80 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H 80 (568)
++||+|+.++++ .||...|+.....+....- .-..++|...++ +++-..++.|.|+.--.... ...+..
T Consensus 39 s~npngr~v~V~-g~geY~iyt~~~~r~k~~G------~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~-~k~i~~- 107 (443)
T PF04053_consen 39 SHNPNGRFVLVC-GDGEYEIYTALAWRNKAFG------SGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV-VKSIKL- 107 (443)
T ss_dssp EE-TTSSEEEEE-ETTEEEEEETTTTEEEEEE------E-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T-T------
T ss_pred EECCCCCEEEEE-cCCEEEEEEccCCcccccC------ceeEEEEecCcc--EEEEECCCeEEEEEcCcccc-ceEEcC-
Confidence 378999999985 5778888885444433221 223478888554 77777789999964322221 111111
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCC------
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGK------ 154 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~------ 154 (568)
...+..+-. |.+|+..+.+ .|.+||..+++.++.+.... |..+.|++++.+++..+.+ .+.|++.+..
T Consensus 108 ~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~ 181 (443)
T PF04053_consen 108 PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIP 181 (443)
T ss_dssp SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBT
T ss_pred CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhccccc
Confidence 112333332 7777776655 89999999999999987554 8999999999999999865 5666654432
Q ss_pred ----CCceEEEeecCCCCCeeEEEEccC
Q 008356 155 ----PQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 155 ----~~~v~~l~~~~h~~~VtsLafspd 178 (568)
+..+..+. .-...|.+.+|..+
T Consensus 182 ~~g~e~~f~~~~--E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 182 EEGVEDAFELIH--EISERIKSGCWVED 207 (443)
T ss_dssp TTB-GGGEEEEE--EE-S--SEEEEETT
T ss_pred ccCchhceEEEE--EecceeEEEEEEcC
Confidence 11233333 12467899999876
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.24 E-value=0.017 Score=62.20 Aligned_cols=144 Identities=15% Similarity=0.068 Sum_probs=89.9
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
++.++.++.+|.|+.+|.++|+.+...+.. .......... + . .++.+..++.|+.+|..+++..... . ...+..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~-~-~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTV-N-LDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeee-c-CCCCcc
Confidence 567778888999999999999988776542 1111111121 3 3 5667788999999999888743222 1 111110
Q ss_pred EE--EEcC--CCCEEEEEeCCCeEEEEECCCCceeeEeecCCC--------eEEEEEec--CCCEEEEEEcCCeEEEEEC
Q 008356 86 GI--SFSS--DDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP--------FSSLAFID--DDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 86 sl--afsP--dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~--------ItsLafsP--dg~~LasGs~DG~V~VWDl 151 (568)
.+ .-+| .+..++.+..++.+..+|..+++.+.......+ ...+...| .+..+++++.+|.+..+|+
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 00 0122 234577788899999999999987665432111 11111122 2557777888999999999
Q ss_pred CCCC
Q 008356 152 RGKP 155 (568)
Q Consensus 152 rt~~ 155 (568)
.+++
T Consensus 274 ~tG~ 277 (394)
T PRK11138 274 RSGQ 277 (394)
T ss_pred CCCC
Confidence 9875
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.0065 Score=66.46 Aligned_cols=138 Identities=16% Similarity=0.180 Sum_probs=91.4
Q ss_pred CccCCCCEEEEEE-CCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe--EEEEECCCCCceeE
Q 008356 1 MYNCKDEHLASIS-LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT--LHLWDTTGRSPKVS 75 (568)
Q Consensus 1 afSpdG~~LasGs-~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt--V~VWDl~t~~~~v~ 75 (568)
+|+|||+.|+... .|| .|+++|+..+... .+.. ..+.-..=.|+|+|+.++++.+..|. |.++|.++... .
T Consensus 244 ~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~ 319 (425)
T COG0823 244 AFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--T 319 (425)
T ss_pred cCCCCCCEEEEEECCCCCccEEEEcCCCCcce-eccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--e
Confidence 5899999877654 455 4777787666533 3432 22222345799999988888888886 55556666653 3
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEc
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLD-KK--LYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~D-Gt--V~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~ 142 (568)
.+......-..-.|+|||++|+..+.. |. |.+.|+.++...+.+........-.|.+++..+...+.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 333333333378899999999888753 43 77778777665666666666667778888877766544
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.16 E-value=0.11 Score=56.75 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las 184 (568)
+++..++.+|++++||.-..+|.+.|.+.+-.+ ....+.. .-......+.|.-+.-.++.
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~-~~~e~~~-~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE-KLCEFDT-DSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccc-eeEEeec-CcCCCCcEEEEECCCcEEEE
Confidence 578999999999999999999999999876553 2233321 22356677888765444333
No 332
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.12 E-value=0.013 Score=69.38 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=73.7
Q ss_pred EEEccCCCeEEEEE----eCC-CeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEECCC--
Q 008356 43 LDYSRNSRHLLVTA----GDD-GTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG---LDKKLYTYDPGS-- 112 (568)
Q Consensus 43 Lafspdg~~lLaTg----s~D-GtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs---~DGtV~IWDlrt-- 112 (568)
|.|--||+ ++++. ..+ +.|+|||-++.- -..-......=.+++|-|.|..|++.. .|+.|.+|.-+.
T Consensus 201 IsWRgDg~-~fAVs~~~~~~~~RkirV~drEg~L--ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 201 ISWRGDGE-YFAVSFVESETGTRKIRVYDREGAL--NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred EEEccCCc-EEEEEEEeccCCceeEEEecccchh--hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 88999998 66662 223 789999987221 111222233446799999999998875 455788887443
Q ss_pred -CceeeEee-cCCCeEEEEEecCCCEEEE---EEcCCeEEEEECCCCC
Q 008356 113 -RRPSSCIT-YEAPFSSLAFIDDDWILTA---GTSNGRVVFYDIRGKP 155 (568)
Q Consensus 113 -~~~v~~~~-h~~~ItsLafsPdg~~Las---Gs~DG~V~VWDlrt~~ 155 (568)
+.....+. ....|..++|+.++.+|++ ......|.+|-+.+..
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 22222222 3334999999999999998 5555669999988753
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0025 Score=72.49 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=84.4
Q ss_pred CccCCCCEEEEEEC----CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE
Q 008356 1 MYNCKDEHLASISL----SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 1 afSpdG~~LasGs~----DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~ 76 (568)
+|+|..-++++++. .|.|-||- ++|++...+.. .-.+.+++|+|..- +|+.|-.-|.+.+|...+.+ ....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e-~htv 96 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTE-THTV 96 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccChHHH-HHhhccccceeEEEecCCce-eeee
Confidence 58999999988764 57888886 56665443332 12245699999864 78888899999999988776 3566
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr 111 (568)
...|+.+|..+.|+++|..++++..-|.|.+|.+.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 77899999999999999999999999999999764
No 334
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.023 Score=61.24 Aligned_cols=136 Identities=13% Similarity=0.031 Sum_probs=88.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
+..++.++.+|.++.+|+.+|+.+...... .. ..+.. .+. .++.++.+|.|+.+|..+++.....-........
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~-~~~~~--~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 329 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SV-NDFAV--DGG-RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT 329 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCC--Cc-cCcEE--ECC-EEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence 566777888999999999999876554321 11 11222 234 5777889999999999887632211110111122
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec-CCCeE-EEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 86 GISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY-EAPFS-SLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 86 slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h-~~~It-sLafsPdg~~LasGs~DG~V~VWDl 151 (568)
.... .+.+|+.++.||.|+++|..+++.+..... ...+. ...+ .+..|++++.||.|+.+++
T Consensus 330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2222 356788899999999999999998776643 22232 2222 2458889999999988764
No 335
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.00056 Score=77.85 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=114.2
Q ss_pred eEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEE
Q 008356 29 AAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK--KLY 106 (568)
Q Consensus 29 v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG--tV~ 106 (568)
.+.|.. +....+|++|+-..+ .|+.|...|.|++|++.++. .......|...|+-+.=+.+|..+++.+.-. -..
T Consensus 1094 w~~frd-~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRD-ETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhc-cccceeeEEeecCCc-eEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchHH
Confidence 344554 557789999998887 69999999999999998876 3556788999999999888888877765444 467
Q ss_pred EEECCC-CceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec-CCCCCeeEEEEccCCCeEEE
Q 008356 107 TYDPGS-RRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC-SSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 107 IWDlrt-~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~-~h~~~VtsLafspdg~~Las 184 (568)
+|++.. +.+.+.+ ....++.|+..-..-+.|+....+.|||+++...+...+... +....-+++.|+|+...++.
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 999865 3444444 345678888766666677777889999999986544433311 12223366788886443322
Q ss_pred eccCCCCeEEEEecCCCcEEcCCCCCCCcccc
Q 008356 185 ETTCKAETALLGGAVGDSILMPDPLPSVTTSS 216 (568)
Q Consensus 185 ~s~ssd~~~Lls~s~Dg~V~VWDlr~~~~~~s 216 (568)
|| .+||+|.......
T Consensus 1248 ---------------dG--vLWDvR~~~aIh~ 1262 (1516)
T KOG1832|consen 1248 ---------------DG--VLWDVRIPEAIHR 1262 (1516)
T ss_pred ---------------Cc--eeeeeccHHHHhh
Confidence 22 4799987544333
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.06 E-value=0.00017 Score=79.63 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=110.9
Q ss_pred CcEEEEEEccCCC-eEEEEEeCCCeEEEEECCCCCce-eEEeccCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEEC
Q 008356 38 QVLRVLDYSRNSR-HLLVTAGDDGTLHLWDTTGRSPK-VSWLKQHSAPTAGISFSS-DDKIIASVG----LDKKLYTYDP 110 (568)
Q Consensus 38 ~~Vs~Lafspdg~-~lLaTgs~DGtV~VWDl~t~~~~-v~~l~~H~~~VtslafsP-dg~~LaSgs----~DGtV~IWDl 110 (568)
..+.|+++..+.+ -+++.|..+|.|-+-.++...-. .....+|..++++++|++ |.++|+.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4567788776544 57889999999999988654322 455678889999999999 777787773 4557999999
Q ss_pred CCC--ceee--Ee--ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEcc-CCCeEE
Q 008356 111 GSR--RPSS--CI--TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQR-AKPVFI 183 (568)
Q Consensus 111 rt~--~~v~--~~--~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafsp-dg~~La 183 (568)
.++ .+.. .+ .......+++|..+.+.+++|...+.|+++|+|........+ ....|..+...| .+.|+
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~nY~- 211 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSPNYF- 211 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCCCce-
Confidence 876 2221 11 234456689999889999999999999999999542211222 233466677777 33333
Q ss_pred EeccCCCCeEEEEecCCCcEEcCC-CCCCC
Q 008356 184 DETTCKAETALLGGAVGDSILMPD-PLPSV 212 (568)
Q Consensus 184 s~s~ssd~~~Lls~s~Dg~V~VWD-lr~~~ 212 (568)
+...|+.|.+|| .+++.
T Consensus 212 ------------cs~~dg~iAiwD~~rnie 229 (783)
T KOG1008|consen 212 ------------CSNSDGDIAIWDTYRNIE 229 (783)
T ss_pred ------------eccccCceeeccchhhhc
Confidence 223499999999 66554
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.002 Score=68.86 Aligned_cols=159 Identities=12% Similarity=0.133 Sum_probs=113.6
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC--CCceeEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCC
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG--RSPKVSWLKQHSAPTAGISFSSDDKIIASVGL-DKKLYTYDPGS 112 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t--~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~-DGtV~IWDlrt 112 (568)
|.+.|+.+.... . .++.+++.||.++.|--.. +...+..+..|...|.+++.+-++.++.+++. |..++++|+++
T Consensus 8 hrd~i~hv~~tk-a-~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK-A-KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh-h-heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 667777654443 2 3899999999999998643 33345667788899999999999999999887 99999999998
Q ss_pred CceeeEeecCCCeEEEEEecCCC----EEEEE-EcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEecc
Q 008356 113 RRPSSCITYEAPFSSLAFIDDDW----ILTAG-TSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETT 187 (568)
Q Consensus 113 ~~~v~~~~h~~~ItsLafsPdg~----~LasG-s~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ 187 (568)
-..+..+........+.|..... .|++. -.++.+.|+|-+...++...... -|..+|.++.+.+.+..+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-lH~sPV~~i~y~qa~Ds~----- 159 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-LHFSPVKKIRYNQAGDSA----- 159 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc-cccCceEEEEeeccccce-----
Confidence 77665555444444444544322 44443 46789999999887654444432 589999999999865444
Q ss_pred CCCCeEEEEecCCCcEEcCCCC
Q 008356 188 CKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 188 ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
++....|.|..|...
T Consensus 160 -------vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 160 -------VSIDISGMVEYWSAE 174 (558)
T ss_pred -------eeccccceeEeecCC
Confidence 444456788888765
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.05 E-value=0.019 Score=66.89 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=88.4
Q ss_pred EEEE-EeCCCeEEEEECCCCCceeEEeccCCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--eeeE----
Q 008356 52 LLVT-AGDDGTLHLWDTTGRSPKVSWLKQHSAP-TAGISFSS-----DDKIIASVGLDKKLYTYDPGSRR--PSSC---- 118 (568)
Q Consensus 52 lLaT-gs~DGtV~VWDl~t~~~~v~~l~~H~~~-VtslafsP-----dg~~LaSgs~DGtV~IWDlrt~~--~v~~---- 118 (568)
+|+- ......|+-.|+..++ .+..+..|... |..++=.. .....+.|-.+..|..||.|-.. ++..
T Consensus 495 mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred eEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 4443 3456789999999888 46667766643 55543221 23455677788889999998642 2321
Q ss_pred eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 119 ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 119 ~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+.....+.|++-..+| +||+|+.+|.|++||--+ .+....+. +-..+|..|+.+.||+|+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp--~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALP--GLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCC--CCCCCeeEEEecCCCcEEEEe
Confidence 1244568888877766 789999999999999543 33333344 557999999999999997654
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.0052 Score=68.99 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=90.3
Q ss_pred eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr 111 (568)
+.+.+...|.--+++..++ +++.|+.-|.|++|+-.++........+-...+..+..+++..+++.|+..|.|.++-+.
T Consensus 28 ~~~~~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ccccCcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 3333444444445566666 899999999999999887763333333344556667778888999999999999999887
Q ss_pred CCceeeE--e-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 112 SRRPSSC--I-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 112 t~~~v~~--~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
...+-.. + .|...|++++|++++..|++|...|+|.+-.+..
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 6433211 1 2678899999999999999999999999988876
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0029 Score=70.22 Aligned_cols=91 Identities=12% Similarity=0.125 Sum_probs=76.3
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 008356 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA-GISFSSDDKIIASVGLDKKLYTYDPGSRRPSS 117 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt-slafsPdg~~LaSgs~DGtV~IWDlrt~~~v~ 117 (568)
.+.-+.|+|.-+ ++|.+..+|.|.++.+.... +..+..|...++ +++|.|||+.|+.|-.||+|++.|++++..+.
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEeccce--eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 455689999887 99999999999999998443 666676777777 99999999999999999999999999988776
Q ss_pred E--eecCCCeEEEEEec
Q 008356 118 C--ITYEAPFSSLAFID 132 (568)
Q Consensus 118 ~--~~h~~~ItsLafsP 132 (568)
. +.....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 6 45667788888863
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0027 Score=70.47 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=72.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
|||.-.+||.+..+|.|.++.+. .+++..+.-+.....++++|.|||+ +|+.|-.||+|++.|+..+.........-.
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~l~~~~~s~e 105 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGRLVSFLFSVE 105 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCceeccccccc
Confidence 89999999999999999999987 7888888764555556999999998 999999999999999988775444444556
Q ss_pred CCeEEEEEc
Q 008356 82 APTAGISFS 90 (568)
Q Consensus 82 ~~Vtslafs 90 (568)
..|.++-|.
T Consensus 106 ~~is~~~w~ 114 (665)
T KOG4640|consen 106 TDISKGIWD 114 (665)
T ss_pred cchheeecc
Confidence 678888886
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.88 E-value=0.34 Score=49.08 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=90.0
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-------
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------- 76 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~------- 76 (568)
..++.|+.|..+| |+++++........+. +...|..+...++-+ +|++- .|+.|+++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~-~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELN-LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccC-EEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3578899999988 9999983333333332 222388888888776 34333 3499999998654321100
Q ss_pred ------eccCCCCeEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----ceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356 77 ------LKQHSAPTAGIS--FSSDDKIIASVGLDKKLYTYDPGSR-----RPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (568)
Q Consensus 77 ------l~~H~~~Vtsla--fsPdg~~LaSgs~DGtV~IWDlrt~-----~~v~~~~h~~~ItsLafsPdg~~LasGs~D 143 (568)
.......+..++ -...+...+.+...++|.+|..... +..+.+.....+..++|. ++.|++|..+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC
Confidence 111223344444 1124444444555558888877552 455667788999999999 5678888754
Q ss_pred CeEEEEECCCC
Q 008356 144 GRVVFYDIRGK 154 (568)
Q Consensus 144 G~V~VWDlrt~ 154 (568)
...+.|+.+.
T Consensus 158 -~f~~idl~~~ 167 (275)
T PF00780_consen 158 -GFYLIDLNTG 167 (275)
T ss_pred -ceEEEecCCC
Confidence 4888899865
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.83 E-value=0.49 Score=51.05 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=88.8
Q ss_pred ccCCCCEEEEE-ECCC----cEEEEECCCCceeEEe-eCCCCCcEEEEEEccCCCeEEEEEeCC----------CeEEEE
Q 008356 2 YNCKDEHLASI-SLSG----DLILHNLASGAKAAEL-KDPNEQVLRVLDYSRNSRHLLVTAGDD----------GTLHLW 65 (568)
Q Consensus 2 fSpdG~~LasG-s~DG----~V~VWDl~tg~~v~~l-~~~h~~~Vs~Lafspdg~~lLaTgs~D----------GtV~VW 65 (568)
++|||++||.+ +..| .|+++|+++|+.+... .. .....+.|.++++.++++...+ ..|+.|
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 68999998865 3444 5999999999876533 22 1122389999988666665433 237888
Q ss_pred ECCCCCce-eEEeccCCCC--eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC-----ceeeEeecCCCeE-EEEEec
Q 008356 66 DTTGRSPK-VSWLKQHSAP--TAGISFSSDDKIIASVGL---D-KKLYTYDPGSR-----RPSSCITYEAPFS-SLAFID 132 (568)
Q Consensus 66 Dl~t~~~~-v~~l~~H~~~--VtslafsPdg~~LaSgs~---D-GtV~IWDlrt~-----~~v~~~~h~~~It-sLafsP 132 (568)
++.+.... ...+...... ...+..++++++|+.... + ..|++.|+..+ ...........+. .+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 88665433 2333333332 567888999998775432 3 45888899875 3333334444443 34444
Q ss_pred CCCEEEEE---EcCCeEEEEECCCCC
Q 008356 133 DDWILTAG---TSNGRVVFYDIRGKP 155 (568)
Q Consensus 133 dg~~LasG---s~DG~V~VWDlrt~~ 155 (568)
.+.+++.. ..++.|...++....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CCEEEEeeCCCCCCcEEEEecccccc
Confidence 33333333 234678888887764
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.80 E-value=0.09 Score=53.33 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=63.2
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTA 85 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vt 85 (568)
|++++.|...|.+++.+..+|.....+.....-.++ ....+++. ++..|+.|+..+..|..+..+.. ..+-...-..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~g-lIycgshd~~~yalD~~~~~cVy-kskcgG~~f~ 139 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGG-LIYCGSHDGNFYALDPKTYGCVY-KSKCGGGTFV 139 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCc-eEEEecCCCcEEEecccccceEE-ecccCCceec
Confidence 678899999999999999999877666643333333 24566676 89999999999999998776432 2332222233
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE
Q 008356 86 GISFSSDDKIIASVGLDKKLYT 107 (568)
Q Consensus 86 slafsPdg~~LaSgs~DGtV~I 107 (568)
+-+..+-...|+.+...|.|.-
T Consensus 140 sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred cceecCCCceEEEEeccceEEE
Confidence 3344552333333444444433
No 345
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.16 Score=54.86 Aligned_cols=151 Identities=16% Similarity=0.141 Sum_probs=109.6
Q ss_pred CccCCCCEEEEEEC---CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEE-
Q 008356 1 MYNCKDEHLASISL---SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW- 76 (568)
Q Consensus 1 afSpdG~~LasGs~---DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~- 76 (568)
+|+++++.+.++.. ++.+.+.|..+++......... .. ..+++.|++..++++-..++.|.+.|...... .+.
T Consensus 122 ~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~ 198 (381)
T COG3391 122 AVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGS 198 (381)
T ss_pred EECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-eccc
Confidence 36788988877765 6889999998888887765433 23 66899999996666666899999999766652 110
Q ss_pred ---eccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeE-eecCC-CeEEEEEecCCCEEEEEEcC-CeEE
Q 008356 77 ---LKQHSAPTAGISFSSDDKIIASVGLD---KKLYTYDPGSRRPSSC-ITYEA-PFSSLAFIDDDWILTAGTSN-GRVV 147 (568)
Q Consensus 77 ---l~~H~~~VtslafsPdg~~LaSgs~D---GtV~IWDlrt~~~v~~-~~h~~-~ItsLafsPdg~~LasGs~D-G~V~ 147 (568)
...-......+.+.+++.++...... +.+...|..++..... ..-.. ....+...|+|.++.+.... +.|.
T Consensus 199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 11222345678999999876665544 5899999998877665 22222 56778999999999888554 8899
Q ss_pred EEECCCC
Q 008356 148 FYDIRGK 154 (568)
Q Consensus 148 VWDlrt~ 154 (568)
+-|..+.
T Consensus 279 vid~~~~ 285 (381)
T COG3391 279 VIDGATD 285 (381)
T ss_pred EEeCCCC
Confidence 9998876
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.14 Score=59.09 Aligned_cols=148 Identities=19% Similarity=0.293 Sum_probs=99.5
Q ss_pred CEEEEEECCC-----cEEEEECCCC------cee---EEe--eCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC-
Q 008356 7 EHLASISLSG-----DLILHNLASG------AKA---AEL--KDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT- 68 (568)
Q Consensus 7 ~~LasGs~DG-----~V~VWDl~tg------~~v---~~l--~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~- 68 (568)
++|++.+.|+ .|+||+++.- .++ +.+ +.+ ...++.+++.+.+-. .+|+|-.||.|.++.-+
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcc
Confidence 5677766654 5999998632 233 111 222 345778889988865 89999999999998642
Q ss_pred --CCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE-e-ecCCCeEEEEEecCCCEEEEEEcCC
Q 008356 69 --GRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC-I-TYEAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 69 --t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~-~-~h~~~ItsLafsPdg~~LasGs~DG 144 (568)
..............+|+.+.+..++..++-+.....|.+|.+....+... + .++...+|..+++...-+++++ +.
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence 22222444445578999999998887744444456699999985443333 3 5777899999998655344444 35
Q ss_pred eEEEEECCCCCC
Q 008356 145 RVVFYDIRGKPQ 156 (568)
Q Consensus 145 ~V~VWDlrt~~~ 156 (568)
.|.+||......
T Consensus 236 ~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 236 FLYFYDSDGRGP 247 (933)
T ss_pred eEEEEcCCCcce
Confidence 799999987643
No 347
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.77 E-value=0.093 Score=46.74 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred eEEEEEcC-CC---CEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 84 TAGISFSS-DD---KIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 84 VtslafsP-dg---~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
|+++++.. ++ +.|++|+.|..|++|+= .+.+..+.....|.+++-... ..++.+..+|+|-+|+-... ..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee
Confidence 56677655 22 68999999999999974 467778888888999888876 67899999999999986443 222
Q ss_pred EEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEE
Q 008356 160 VLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSIL 204 (568)
Q Consensus 160 ~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~ 204 (568)
.- ....+.++++..- ..++...|+.+-.+|.|-
T Consensus 77 iK----SK~~~~~~~~~D~--------~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK----SKNQVTSMAFYDI--------NGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec----cCCCeEEEEEEcC--------CCCCceEEEEEecCCeEE
Confidence 21 2334666665442 122334455555566654
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.096 Score=46.63 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=69.8
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecC
Q 008356 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYE 122 (568)
Q Consensus 43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~ 122 (568)
+.|..+|.+-|++|++|..|++|+-.. .+..+.. ...|+++.-... ..++.+-.+|+|-+|+- .+.+..++.+
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK 80 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSK 80 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccC
Confidence 345566777899999999999998653 2444443 345777776654 67999999999999975 3344555556
Q ss_pred CCeEEEEEecC---C-CEEEEEEcCCeEEE
Q 008356 123 APFSSLAFIDD---D-WILTAGTSNGRVVF 148 (568)
Q Consensus 123 ~~ItsLafsPd---g-~~LasGs~DG~V~V 148 (568)
..+.++++..- | .-|++|-.+|.|-+
T Consensus 81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 66777777653 2 36888888888753
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.60 E-value=0.25 Score=51.61 Aligned_cols=162 Identities=11% Similarity=0.073 Sum_probs=95.2
Q ss_pred CCEEEEEEC----------CCcEEEEECCCC-----ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 6 DEHLASISL----------SGDLILHNLASG-----AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 6 G~~LasGs~----------DG~V~VWDl~tg-----~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
..+|++|.. .|.|.++++... +..........+.|.+|+-. +. .|+++ .++.|++|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~-~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVA-VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEE-ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEe-ecCEEEEEEccCc
Confidence 356776643 288999999873 22222222246778877765 33 33333 3488999999777
Q ss_pred C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeEe-e--cCCCeEEEEEecCCCEEEEEEcCCe
Q 008356 71 S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RRPSSCI-T--YEAPFSSLAFIDDDWILTAGTSNGR 145 (568)
Q Consensus 71 ~-~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~~v~~~-~--h~~~ItsLafsPdg~~LasGs~DG~ 145 (568)
+ ............+.++... +++|+.|...+.|.++..+. .+.+..+ . ....+.++.|-.+++.++++..+|.
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 6 3233333333466666665 66899998878777764433 2223333 2 3455888888866679999999999
Q ss_pred EEEEECCCC------CC-ceEEEeecCCCCCeeEE
Q 008356 146 VVFYDIRGK------PQ-PLTVLRACSSSEAVSSL 173 (568)
Q Consensus 146 V~VWDlrt~------~~-~v~~l~~~~h~~~VtsL 173 (568)
|.++..... .. .+.....+.....|+++
T Consensus 196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 196 LFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 999987631 11 22333333345667777
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.51 E-value=0.17 Score=56.38 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=89.7
Q ss_pred CCCEEEEEECCC------------------cEEEEECCCCceeEEeeCCCCC----------cEEEEE-EccCCCeEEEE
Q 008356 5 KDEHLASISLSG------------------DLILHNLASGAKAAELKDPNEQ----------VLRVLD-YSRNSRHLLVT 55 (568)
Q Consensus 5 dG~~LasGs~DG------------------~V~VWDl~tg~~v~~l~~~h~~----------~Vs~La-fspdg~~lLaT 55 (568)
.+.+++.+..++ .|.-+|+++|+.+-.++..+.. .+..+. ..-....+++.
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~ 306 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH 306 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence 456777776555 7999999999988776532211 111111 11111236788
Q ss_pred EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE------------------eCCCeEEEEECCCCceee
Q 008356 56 AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV------------------GLDKKLYTYDPGSRRPSS 117 (568)
Q Consensus 56 gs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg------------------s~DGtV~IWDlrt~~~v~ 117 (568)
++.+|.++..|..+++.....-.. ...+...| ..++.+ ..+|.|..+|+.+++.+.
T Consensus 307 g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W 380 (488)
T cd00216 307 APKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW 380 (488)
T ss_pred ECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence 889999999999998843222111 11122333 333322 246789999999999887
Q ss_pred EeecC---------CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCc
Q 008356 118 CITYE---------APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQP 157 (568)
Q Consensus 118 ~~~h~---------~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~ 157 (568)
..... .+...-...-.+..|++++.||.|+.+|.++++..
T Consensus 381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence 66433 11111111124678899999999999999998543
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.50 E-value=0.2 Score=51.03 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=86.9
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-- 114 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-- 114 (568)
..++.|.|+|+.+.++++....+.|..++.++.- ++.+. ...+..-.|++..++.++++--.++.+.++++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v--lr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV--LRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E--EEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE--EEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3489999999988788888889999999976433 33332 223568889998888777777679999999884321
Q ss_pred --e--eeEe------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC--CCCceEEEee------cCCCCCeeEEEEc
Q 008356 115 --P--SSCI------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG--KPQPLTVLRA------CSSSEAVSSLCWQ 176 (568)
Q Consensus 115 --~--v~~~------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt--~~~~v~~l~~------~~h~~~VtsLafs 176 (568)
. +..+ .+...+-.++|++.++.|+++-+..-..||.++. .......... ......+.+++++
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 1 1112 1445689999999988888888777777777765 2111221111 1133457889999
Q ss_pred cCCCeE
Q 008356 177 RAKPVF 182 (568)
Q Consensus 177 pdg~~L 182 (568)
|....+
T Consensus 180 p~t~~l 185 (248)
T PF06977_consen 180 PRTGHL 185 (248)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 864433
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.44 E-value=0.18 Score=51.11 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=73.8
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--------------
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSS-------------- 117 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~-------------- 117 (568)
.|+.|.++| |++|++.......... +...|..+...++-+.+++-+ |+.|+++|+..-....
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccccc
Confidence 688889999 9999993332222222 223399999999777776665 5999999987643332
Q ss_pred -EeecCCCeEEEE--EecCCCEEEEEEcCCeEEEEECCCCCCce-EEEeecCCCCCeeEEEEcc
Q 008356 118 -CITYEAPFSSLA--FIDDDWILTAGTSNGRVVFYDIRGKPQPL-TVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 118 -~~~h~~~ItsLa--fsPdg~~LasGs~DG~V~VWDlrt~~~~v-~~l~~~~h~~~VtsLafsp 177 (568)
.+.....+...+ -...+...++.....+|.+|......... ..++...-...+..++|..
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~ 148 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG 148 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC
Confidence 122233344444 11234444444445689998887642222 2333334557889999984
No 353
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.40 E-value=0.0091 Score=39.01 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=31.8
Q ss_pred eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 008356 74 VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD 109 (568)
Q Consensus 74 v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD 109 (568)
...+..|...|+++.|.+++..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445567888999999999889999999999999996
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.13 Score=52.09 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=85.9
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC
Q 008356 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA 123 (568)
Q Consensus 44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~ 123 (568)
...++.+.+++.|+..+.+.--|..++. +.+...-..+|.+-+.- -+++++.|...|.+++.+..+|.....+...+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~--~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGN--LIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCc--EEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 3445666789999999999999998887 33434444555544433 47789999999999999999998888776555
Q ss_pred CeE-EEEEecCCCEEEEEEcCCeEEEEECCCCCCceE
Q 008356 124 PFS-SLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLT 159 (568)
Q Consensus 124 ~It-sLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~ 159 (568)
.|. .....+++..+.+|+.|+..+..|.++.....+
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 554 344567899999999999999999998754333
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.12 Score=56.79 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=90.3
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCCCce--eeE
Q 008356 48 NSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGSRRP--SSC 118 (568)
Q Consensus 48 dg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-------~LaSgs~DGtV~IWDlrt~~~--v~~ 118 (568)
+..-+|..+.....|+-.|+..++ .+..+.-|.. |+-+.+.|+.+ .-+.|-.|..|.-||.|-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 333345566666778888998887 4666676666 88888887543 223455678899999985322 211
Q ss_pred e-----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 119 I-----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 119 ~-----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
. .......|.+-..+| ++++|+.+|.|++||- .+.+....+. +...+|..|...-+|++|++.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlP--gLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALP--GLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccc--ccCCceeeEEeeccCcEEEEe
Confidence 1 123456666666555 8899999999999997 3333334444 667899999999999997654
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.29 E-value=0.22 Score=56.89 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=90.1
Q ss_pred CccCCCCEEEEEE------CCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------------C
Q 008356 1 MYNCKDEHLASIS------LSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------------G 60 (568)
Q Consensus 1 afSpdG~~LasGs------~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------------G 60 (568)
+++|+|+.++..- .|. .|.+++. .+.. ..+.. ......-.|+|+|+ .+++..+. +
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~--g~~~t~PsWspDG~-~lw~v~dg~~~~~v~~~~~~g 430 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE--GHSLTRPSWSLDAD-AVWVVVDGNTVVRVIRDPATG 430 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec--CCCCCCceECCCCC-ceEEEecCcceEEEeccCCCc
Confidence 3689999887665 243 4555554 2333 33322 12366689999977 34444322 2
Q ss_pred eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE---EECCCCceeeE-----e--ecCCCeEEEEE
Q 008356 61 TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYT---YDPGSRRPSSC-----I--TYEAPFSSLAF 130 (568)
Q Consensus 61 tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~I---WDlrt~~~v~~-----~--~h~~~ItsLaf 130 (568)
.+.+.+++.++... .....|..+.|+|||..|+... ++.|++ -....+. ... + .....+..+.|
T Consensus 431 ql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 431 QLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred eEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccceE
Confidence 34444444443211 3356799999999999988766 477777 4433443 222 2 13334688999
Q ss_pred ecCCCEEEEEEcCCeEEEE--ECCCCCCceEEEeecCCCCCeeEEEEcc
Q 008356 131 IDDDWILTAGTSNGRVVFY--DIRGKPQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 131 sPdg~~LasGs~DG~V~VW--Dlrt~~~~v~~l~~~~h~~~VtsLafsp 177 (568)
..++.++ ++..++...+| ++..... ..+........+..|+-.+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccc--cccCCCCccCceEEEecCC
Confidence 9998854 55554444444 4444321 1112112345566666554
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.21 E-value=0.11 Score=57.29 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------CceeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----------SPKVS 75 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----------~~~v~ 75 (568)
|.+|+..+.+ .|.+||+++++.++.+.. ..|..+.|+++++ +++..+. ..+.|++.+.. +....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceE
Confidence 6666666544 899999999999999984 2478899999998 5655554 46677665433 11234
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 76 WLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 76 ~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
.+......|.+.+|..+ .++..... .|++ +..|+.-.....+.++.=+.+.+..+.+.....|+.|..+.+.
T Consensus 191 ~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 191 LIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 44444677999999855 55555555 6776 4455543333446677788888877888888888888888776
No 358
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.19 E-value=0.8 Score=49.39 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=113.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEc----cCCCe--EEEEEeCC---CeEEEEECCCCCcee
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYS----RNSRH--LLVTAGDD---GTLHLWDTTGRSPKV 74 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafs----pdg~~--lLaTgs~D---GtV~VWDl~t~~~~v 74 (568)
|...+|+...+++-+.+||+ .|+.+..+.. +.++.+... -.++. ++++..++ ..|++|.++.....+
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~---Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLPV---GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE-S---S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeecC---CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 34457777788899999998 6777776653 223333321 13332 23333333 479999886433223
Q ss_pred EEecc-------CCCCeEEEEEc--C-CCC-EEEEEeCCCeEEEEECC---CC----ceeeEeecCCCeEEEEEecCCCE
Q 008356 75 SWLKQ-------HSAPTAGISFS--S-DDK-IIASVGLDKKLYTYDPG---SR----RPSSCITYEAPFSSLAFIDDDWI 136 (568)
Q Consensus 75 ~~l~~-------H~~~Vtslafs--P-dg~-~LaSgs~DGtV~IWDlr---t~----~~v~~~~h~~~ItsLafsPdg~~ 136 (568)
..+.. ....++.+|+- + ++. +.+....+|.+..|-+. .+ +.++.+.....+..|+......+
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 33321 12347778773 4 454 56667788988877764 33 35677778889999999999999
Q ss_pred EEEEEcCCeEEEEECCCCCCc-eEEEee---cCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 137 LTAGTSNGRVVFYDIRGKPQP-LTVLRA---CSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 137 LasGs~DG~V~VWDlrt~~~~-v~~l~~---~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
|+.+-++--|.-|+.+-.... ...+.. .....-|-.|++-.. ....+.++++.-.++...|||...
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~--------~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG--------SDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE---------CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec--------CCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999998998988743211 122211 123345666666442 122345666666788999999764
No 359
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.17 E-value=0.016 Score=37.74 Aligned_cols=38 Identities=32% Similarity=0.604 Sum_probs=30.8
Q ss_pred ceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEE
Q 008356 27 AKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWD 66 (568)
Q Consensus 27 ~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWD 66 (568)
+.+..+.. +...|.++.|.+++. ++++++.|+.+++||
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 34455554 667889999999886 899999999999996
No 360
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.12 E-value=0.39 Score=54.90 Aligned_cols=135 Identities=17% Similarity=0.159 Sum_probs=79.9
Q ss_pred CcEEEEEEccCCCeEEEEEe-----CCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC--------
Q 008356 38 QVLRVLDYSRNSRHLLVTAG-----DDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD-------- 102 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs-----~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D-------- 102 (568)
..+...+++++|+.++++.. .|. .|.+++..... .....+ .....-.|+|+++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 35677899999996655552 243 45555653322 222232 237888999998877776533
Q ss_pred ----CeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEE---EECCCCCCceEE-----EeecCCCCCe
Q 008356 103 ----KKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVF---YDIRGKPQPLTV-----LRACSSSEAV 170 (568)
Q Consensus 103 ----GtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~V---WDlrt~~~~v~~-----l~~~~h~~~V 170 (568)
+.+.+.++..+.... ...+.|..+.|+|||..++... +++|+| -....+. ..+ +. ..-...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~-~~l~~~~ 499 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVG-PGLGDTA 499 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEee-cccCCcc
Confidence 233333444333322 3356799999999999988876 477777 3323332 111 11 1223346
Q ss_pred eEEEEccCCCeE
Q 008356 171 SSLCWQRAKPVF 182 (568)
Q Consensus 171 tsLafspdg~~L 182 (568)
..+.|..++.++
T Consensus 500 ~~l~W~~~~~L~ 511 (591)
T PRK13616 500 VSLDWRTGDSLV 511 (591)
T ss_pred ccceEecCCEEE
Confidence 788898876543
No 361
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.01 E-value=0.47 Score=50.26 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=111.5
Q ss_pred ccCCCCEEEEEEC--CCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CCceeE---
Q 008356 2 YNCKDEHLASISL--SGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG-RSPKVS--- 75 (568)
Q Consensus 2 fSpdG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~~~v~--- 75 (568)
++.||+++++... -..|.|-|++.++.+.++.. .+ +. -.-|.++.-|.+-|.||.+.-..++. ++...+
T Consensus 102 ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG-C~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 102 LSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG-CW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp E-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS-EE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred EccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC-EE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 4567777666533 34677788888888777764 22 22 12233333588889999999998863 332211
Q ss_pred EeccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE--ee-----------cCCCeEEEEEecCCCEEEEEE
Q 008356 76 WLKQHSAPT-AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--IT-----------YEAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 76 ~l~~H~~~V-tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~--~~-----------h~~~ItsLafsPdg~~LasGs 141 (568)
.+..-..++ ..-++...+..++-.+.+|.|+-.|+........ +. ..+.-.-+++++..+.|++-.
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 111122222 2334445556666688999999999887653221 11 112344678887666655533
Q ss_pred cCC----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEe-cCCCcEEcCCCCC
Q 008356 142 SNG----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGG-AVGDSILMPDPLP 210 (568)
Q Consensus 142 ~DG----------~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~-s~Dg~V~VWDlr~ 210 (568)
..| .|.+||+.+.++ +..+. -..++.+|..+.+ +..+|++. ..++.|.+||...
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~---l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKR-VARIP---LEHPIDSIAVSQD-----------DKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEE-EEEEE---EEEEESEEEEESS-----------SS-EEEEEETTTTEEEEEETTT
T ss_pred cCCCCCCccCCceEEEEEECCCCeE-EEEEe---CCCccceEEEccC-----------CCcEEEEEcCCCCeEEEEeCcC
Confidence 221 388888888743 33333 2345778888775 55566554 4478999999987
Q ss_pred CCcccc
Q 008356 211 SVTTSS 216 (568)
Q Consensus 211 ~~~~~s 216 (568)
.....+
T Consensus 322 Gk~~~~ 327 (342)
T PF06433_consen 322 GKLVRS 327 (342)
T ss_dssp --EEEE
T ss_pred CcEEee
Confidence 655443
No 362
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.88 E-value=0.67 Score=49.93 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=95.0
Q ss_pred CccCCCCEEEEEEC-CC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEe
Q 008356 1 MYNCKDEHLASISL-SG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 1 afSpdG~~LasGs~-DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l 77 (568)
+|..||+.|+.++. || .+++.|+++++..+.-.+..... ....++++++.+++ ...+..|+-.|+.+.+. ....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~-~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLSPDDRALYY-VKNGRSLRRVDLDTLEE-RVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-TTSSEEEE-EETTTEEEEEETTT--E-EEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEecCCCeEEE-EECCCeEEEEECCcCcE-EEEE
Confidence 57889987766654 44 57778888887655444322222 23456788774444 44557888889988773 2333
Q ss_pred ccCCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEECCCCceeeEeecCCCeEEEEEecC
Q 008356 78 KQHSAPTAGISFS--SDDKIIASVGL----------------------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDD 133 (568)
Q Consensus 78 ~~H~~~Vtslafs--Pdg~~LaSgs~----------------------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPd 133 (568)
......+-...|. .++..++-.-. ...|...|+.+++...++.....+..+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 3444445445664 36666543311 12577789999998888888889999999995
Q ss_pred -CCEEEEEEc---CCe-EEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 134 -DWILTAGTS---NGR-VVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 134 -g~~LasGs~---DG~-V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
...|+.|.+ +.. -+||-++......+.+........+..=-|.++|..|..-
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 455555554 221 3566555433223333322233445566789998877553
No 363
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.87 E-value=0.7 Score=51.49 Aligned_cols=149 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCC-----c-E-EEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-----V-L-RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-----~-V-s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
+..++++..++.|+.+|..+|+.+-.+...... . + ..+... ++. .++.++.++.|+.+|.++++...+ ..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~-~V~v~~~~g~v~AlD~~TG~~~W~-~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR-KVFFGTFDGRLVALDAETGKQVWK-FG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC-eEEEecCCCeEEEEECCCCCEeee-ec
Confidence 456777888999999999999987766532210 0 0 011111 213 577888999999999998874322 22
Q ss_pred cCCC--CeEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCceeeEeecCCC---------------------
Q 008356 79 QHSA--PTAGISFSS--DDKIIASVG---------LDKKLYTYDPGSRRPSSCITYEAP--------------------- 124 (568)
Q Consensus 79 ~H~~--~VtslafsP--dg~~LaSgs---------~DGtV~IWDlrt~~~v~~~~h~~~--------------------- 124 (568)
.... .-..+.-.| .+.+++.++ .++.|..+|..+++.+..+.....
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 1111 001111122 234455543 468899999999998876643110
Q ss_pred e-EEEEEecCCCEEEEEEcCC------------------eEEEEECCCCCCc
Q 008356 125 F-SSLAFIDDDWILTAGTSNG------------------RVVFYDIRGKPQP 157 (568)
Q Consensus 125 I-tsLafsPdg~~LasGs~DG------------------~V~VWDlrt~~~~ 157 (568)
+ ...++.+.+..+++++.++ .|.-+|.++++..
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 1 1244555567888887665 6888898888543
No 364
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.83 E-value=1.2 Score=45.75 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008356 28 KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDG--TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKL 105 (568)
Q Consensus 28 ~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG--tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV 105 (568)
.+.++..........+.|..++. ++-+.+.-| .|+.+|+.+++......-...----.++.. +++...-.-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 34455532355677888877775 777777777 599999998874322222222222334444 34444555678899
Q ss_pred EEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCC---CeeEEEEccCCCeE
Q 008356 106 YTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSE---AVSSLCWQRAKPVF 182 (568)
Q Consensus 106 ~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~---~VtsLafspdg~~L 182 (568)
.+||..+-+.+..+...+.=..++ .++..|+.......|+++|..+.. ....+....... .++.+.|. +|...
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~-~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK-EVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S-EEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccc-eEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 999999999998888777777777 457778887778899999998763 233333222222 35556665 44444
Q ss_pred EEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 183 IDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 183 as~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
+.. +..+..+.+....+..+.++|+..
T Consensus 189 ANV-W~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 189 ANV-WQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEE-TTSSEEEEEETTT-BEEEEEE-HH
T ss_pred EEe-CCCCeEEEEeCCCCeEEEEEEhhH
Confidence 444 444555555555445555556543
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.73 E-value=1.6 Score=45.96 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=93.0
Q ss_pred EEEEECCCCceeEEeeC----CCCCcEEEEEEccCCCeEEEEEeC------C---CeEEEEECCCCCceeEEeccCCCCe
Q 008356 18 LILHNLASGAKAAELKD----PNEQVLRVLDYSRNSRHLLVTAGD------D---GTLHLWDTTGRSPKVSWLKQHSAPT 84 (568)
Q Consensus 18 V~VWDl~tg~~v~~l~~----~h~~~Vs~Lafspdg~~lLaTgs~------D---GtV~VWDl~t~~~~v~~l~~H~~~V 84 (568)
+++++.+++..+..+.. ......+++...|+|. +.++... + ..-.||.++.....++.+..+-..-
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 56666665555332221 1224456788899987 3332222 1 1123454442222355666667778
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEECCC--C----ceeeEe--ecCCCeEEEEEecCCCEEEEEEcCC-eEEEEECCCC
Q 008356 85 AGISFSSDDKIIASVGL-DKKLYTYDPGS--R----RPSSCI--TYEAPFSSLAFIDDDWILTAGTSNG-RVVFYDIRGK 154 (568)
Q Consensus 85 tslafsPdg~~LaSgs~-DGtV~IWDlrt--~----~~v~~~--~h~~~ItsLafsPdg~~LasGs~DG-~V~VWDlrt~ 154 (568)
+.|+|+||++.++.+.. .+.|.-|++.. + +....+ ...+..-.++...+|++.+++..+| .|.+|+.+ +
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C
Confidence 99999999988877764 47888887752 1 111111 2346677888888998886665555 89999999 3
Q ss_pred CCceEEEeecCCCCCeeEEEEcc
Q 008356 155 PQPLTVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 155 ~~~v~~l~~~~h~~~VtsLafsp 177 (568)
+.+..+.. ....+++++|--
T Consensus 245 -~l~~~i~l--P~~~~t~~~FgG 264 (307)
T COG3386 245 -KLLGEIKL--PVKRPTNPAFGG 264 (307)
T ss_pred -cEEEEEEC--CCCCCccceEeC
Confidence 34455542 236677777743
No 366
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.71 E-value=0.44 Score=51.78 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=96.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEe--e-----CCCCCcEEEEEEcc-----CC--CeEEEEEeCCCeEEEEECC--
Q 008356 5 KDEHLASISLSGDLILHNLASGAKAAEL--K-----DPNEQVLRVLDYSR-----NS--RHLLVTAGDDGTLHLWDTT-- 68 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~~v~~l--~-----~~h~~~Vs~Lafsp-----dg--~~lLaTgs~DGtV~VWDl~-- 68 (568)
|=.++|+|..+|.+.|.|++....+..- . ......++++.|.- |+ .-++++|...|.+.+|.+.
T Consensus 96 ~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~ 175 (395)
T PF08596_consen 96 DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPS 175 (395)
T ss_dssp BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-
T ss_pred CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecC
Confidence 3457899999999999999776655441 1 12345677888862 21 1368899999999999884
Q ss_pred CCC-ce---eEEeccCCCCeEEEE-EcCC-C-------------------CEEEEEeCCCeEEEEECCCCceeeEeecC-
Q 008356 69 GRS-PK---VSWLKQHSAPTAGIS-FSSD-D-------------------KIIASVGLDKKLYTYDPGSRRPSSCITYE- 122 (568)
Q Consensus 69 t~~-~~---v~~l~~H~~~Vtsla-fsPd-g-------------------~~LaSgs~DGtV~IWDlrt~~~v~~~~h~- 122 (568)
.+. .. ......+.++|..+. ++.+ + ..++....+..++++..-+.+........
T Consensus 176 ~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~ 255 (395)
T PF08596_consen 176 SNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDP 255 (395)
T ss_dssp GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-
T ss_pred CCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccc
Confidence 111 11 112234566666665 3221 0 12344444677999999887765544311
Q ss_pred CCeEEEEEe-----cCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCeEEEe
Q 008356 123 APFSSLAFI-----DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 123 ~~ItsLafs-----Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~--~h~~~VtsLafspdg~~Las~ 185 (568)
..+..+++- ..+..|++-..+|.|++|.+-.-+ .+..+... .+...+....+.++|..++..
T Consensus 256 ~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk-ei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~ 324 (395)
T PF08596_consen 256 FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK-EIKSVSLPPPLDSRRLSSSSISRNGDIFYWT 324 (395)
T ss_dssp EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred cccceEEEEeecccCCceEEEEEECCCcEEEEECCCch-HhhcccCCCccccccccccEECCCCCEEEEe
Confidence 233344552 357788889999999999998753 23333321 122335566778887766555
No 367
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.63 E-value=2.2 Score=48.22 Aligned_cols=201 Identities=9% Similarity=-0.045 Sum_probs=110.1
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE----------EEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR----------VLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS 75 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs----------~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~ 75 (568)
+..|++++.++.|+-+|..+|+.+-++.......+. .+.+. +. .++.++.|+.|..+|..+++....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCEEee
Confidence 457778888899999999999988776532111111 11222 22 467788899999999988874322
Q ss_pred EeccCCCCeEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCceeeEeecC--C----------------------
Q 008356 76 WLKQHSAPTAGISFSS--DDKIIASVG------LDKKLYTYDPGSRRPSSCITYE--A---------------------- 123 (568)
Q Consensus 76 ~l~~H~~~VtslafsP--dg~~LaSgs------~DGtV~IWDlrt~~~v~~~~h~--~---------------------- 123 (568)
.-......-..+.-.| .+..++.+. .+|.|+.+|.++++.+..+... .
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 1111111001111122 233455443 2689999999999987665210 0
Q ss_pred --------Ce-EEEEEecCCCEEEEEEcC-----C-----------eEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356 124 --------PF-SSLAFIDDDWILTAGTSN-----G-----------RVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 124 --------~I-tsLafsPdg~~LasGs~D-----G-----------~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd 178 (568)
.+ ..+.+.+...+|+.+..+ + .|.-.|+++++.. -.++...|... .... +.
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~-W~~Q~~~~D~w--D~d~-~~ 301 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK-WHYQTTPHDEW--DYDG-VN 301 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE-EeeeCCCCCCc--cccC-CC
Confidence 01 134667766777776632 2 4666777777432 22232223222 1110 11
Q ss_pred CCeEEEe-ccCCCCeEEEEecCCCcEEcCCCCCCCc
Q 008356 179 KPVFIDE-TTCKAETALLGGAVGDSILMPDPLPSVT 213 (568)
Q Consensus 179 g~~Las~-s~ssd~~~Lls~s~Dg~V~VWDlr~~~~ 213 (568)
...|+.. .+......++.+..+|.+.+.|-+....
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2233332 1111225677888889999988766543
No 368
>PHA02713 hypothetical protein; Provisional
Probab=95.63 E-value=0.42 Score=54.28 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=71.3
Q ss_pred CCCEEEEEECC------CcEEEEECCCCceeEEeeCCCCCc-EEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 008356 5 KDEHLASISLS------GDLILHNLASGAKAAELKDPNEQV-LRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP 72 (568)
Q Consensus 5 dG~~LasGs~D------G~V~VWDl~tg~~v~~l~~~h~~~-Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~~~ 72 (568)
++...++||.+ ..+..||+.+..-. .+..-.... -.+++ .-++. +.+.|+.++ .|..||..++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDK- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEE-EECCE-EEEECCcCCCCCCceEEEEECCCCe-
Confidence 45556667653 34778887665421 121101111 11122 22344 778888764 48889987664
Q ss_pred eeEEeccCCCCeEEEE-EcCCCCEEEEEeCCC-----------------------eEEEEECCCCceeeEeec-CCCeEE
Q 008356 73 KVSWLKQHSAPTAGIS-FSSDDKIIASVGLDK-----------------------KLYTYDPGSRRPSSCITY-EAPFSS 127 (568)
Q Consensus 73 ~v~~l~~H~~~Vtsla-fsPdg~~LaSgs~DG-----------------------tV~IWDlrt~~~v~~~~h-~~~Its 127 (568)
...+.....+..... ..-+++..+.||.++ .|..||.++.+-...-.. ......
T Consensus 379 -W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 379 -WKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred -EEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 222222111111111 112677777787652 477888877643322111 111111
Q ss_pred EEEecCCCEEEEEEcC------CeEEEEECCC
Q 008356 128 LAFIDDDWILTAGTSN------GRVVFYDIRG 153 (568)
Q Consensus 128 LafsPdg~~LasGs~D------G~V~VWDlrt 153 (568)
.+..-++++.++|+.+ ..|..||+++
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1122246777777754 2467899887
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.61 E-value=1.9 Score=43.88 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=85.6
Q ss_pred cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCce
Q 008356 39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYD-PGSRRP 115 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWD-lrt~~~ 115 (568)
.+...+++++++.+.+... ....|+++...... ...+. ...+....|.+++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 5677899999985555542 33445555544332 22222 23678889999987777766666666663 333332
Q ss_pred ee-Ee--e-cCCCeEEEEEecCCCEEEEEE---cCCeEEEEECCCCC-C-ceEE---Eee-cCCCCCeeEEEEccCCCeE
Q 008356 116 SS-CI--T-YEAPFSSLAFIDDDWILTAGT---SNGRVVFYDIRGKP-Q-PLTV---LRA-CSSSEAVSSLCWQRAKPVF 182 (568)
Q Consensus 116 v~-~~--~-h~~~ItsLafsPdg~~LasGs---~DG~V~VWDlrt~~-~-~v~~---l~~-~~h~~~VtsLafspdg~~L 182 (568)
.. .+ . ....|..++++|||..++... .++.|.|--+.... . +... +.. ......+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 21 11 1 222899999999999988866 35777777553211 1 1111 111 1234678999999976655
Q ss_pred EEe
Q 008356 183 IDE 185 (568)
Q Consensus 183 as~ 185 (568)
+..
T Consensus 181 V~~ 183 (253)
T PF10647_consen 181 VLG 183 (253)
T ss_pred EEe
Confidence 444
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.55 E-value=1.3 Score=47.76 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=73.5
Q ss_pred EEEEEEccCCCeEEEEEeCCCe----EEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------e
Q 008356 40 LRVLDYSRNSRHLLVTAGDDGT----LHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK-----------K 104 (568)
Q Consensus 40 Vs~Lafspdg~~lLaTgs~DGt----V~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG-----------t 104 (568)
+..+.++|+++.++++-+..|. |+++|+.+++.....+.... ...+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3457899999966666565554 99999998864322222211 22399999988877665333 4
Q ss_pred EEEEECCCCcee--eEee--cCCC-eEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 008356 105 LYTYDPGSRRPS--SCIT--YEAP-FSSLAFIDDDWILTAGTSN----GRVVFYDIRGK 154 (568)
Q Consensus 105 V~IWDlrt~~~v--~~~~--h~~~-ItsLafsPdg~~LasGs~D----G~V~VWDlrt~ 154 (568)
|++|.+.+.... .++. .... ...+..++++++|++.... ..|.+.|+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 888998876533 3332 2233 6788899999998875432 35788888764
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=0.024 Score=56.34 Aligned_cols=102 Identities=8% Similarity=0.060 Sum_probs=63.2
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecC-CCeEEE
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF-SSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYE-APFSSL 128 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslaf-sPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~-~~ItsL 128 (568)
-+++|+.+|.|++|..............-...|-++-- -.++.+.++++.|+.|+.|++.-.+.+... .|. ..+..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 58899999999999986322111111112222333222 225668899999999999999887776655 344 444444
Q ss_pred EEecCCCEEEEE--EcCCeEEEEECCC
Q 008356 129 AFIDDDWILTAG--TSNGRVVFYDIRG 153 (568)
Q Consensus 129 afsPdg~~LasG--s~DG~V~VWDlrt 153 (568)
.....+++|+.. +.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 455555566655 5666666666654
No 372
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.47 E-value=0.032 Score=63.86 Aligned_cols=109 Identities=12% Similarity=0.199 Sum_probs=84.5
Q ss_pred EEEEEEccCCCeEEEEEe----CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356 40 LRVLDYSRNSRHLLVTAG----DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (568)
Q Consensus 40 Vs~Lafspdg~~lLaTgs----~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~ 115 (568)
-+-..|+|... +|++++ ..|.|-||- +++++.... ..+-.+++++|+|....|+.|-.-|.+.+|...+.+.
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34467999888 777765 457888885 334432211 1223467799999999999999999999999877654
Q ss_pred eeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 116 SSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 116 v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
-... .|..+|..+.|+++|..|+++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4333 799999999999999999999999999999877
No 373
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=0.15 Score=60.41 Aligned_cols=148 Identities=11% Similarity=0.027 Sum_probs=95.1
Q ss_pred CCcEEEEEEccCCCeEEEEEe-CCCeEEEEECCCCCce----eE------EeccCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 008356 37 EQVLRVLDYSRNSRHLLVTAG-DDGTLHLWDTTGRSPK----VS------WLKQHSAPTAGISFSS-DDKIIASVGLDKK 104 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLaTgs-~DGtV~VWDl~t~~~~----v~------~l~~H~~~VtslafsP-dg~~LaSgs~DGt 104 (568)
.-.+..+...+|+....+.-+ .+-.|+.||+..-..- .. ........+.++.|+| -....+.+..|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 334455566666653333333 3447999998543211 11 1222334567888998 3445677788998
Q ss_pred EEEEECCCCc-eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeec--CCCCCeeEEEEccCCCe
Q 008356 105 LYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRAC--SSSEAVSSLCWQRAKPV 181 (568)
Q Consensus 105 V~IWDlrt~~-~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~--~h~~~VtsLafspdg~~ 181 (568)
|++.-+.... .+..+......+|++|+|.|+.+++|...|++.-|......+ ..+... .....|.+|+|-....+
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecceeE
Confidence 9888765432 233345667889999999999999999999999998765421 112111 12467999999988888
Q ss_pred EEEec
Q 008356 182 FIDET 186 (568)
Q Consensus 182 Las~s 186 (568)
++.-+
T Consensus 258 lvvy~ 262 (1405)
T KOG3630|consen 258 LVVYG 262 (1405)
T ss_pred EEEec
Confidence 77653
No 374
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.31 E-value=4 Score=41.88 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=99.7
Q ss_pred CCCCEEEEEECCC--cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC
Q 008356 4 CKDEHLASISLSG--DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 4 pdG~~LasGs~DG--~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
.+|.++-+.|.-| .|+.+|+.+++......-...-.-..++... +.++.-.=.++...+||..+-+. +..+. ..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~-~~~~~-y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKK-IGTFP-YP 129 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEE-EEEEE--S
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceE-EEEEe-cC
Confidence 4566666666666 6999999999987666543333333344443 34666667899999999987663 33332 23
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---c---CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---Y---EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---h---~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
..=..++ .+++.|+.......|+++|..+.+.+..+. . -..++-+.|. +|.+.|=.=....|...|+.++.
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~ 206 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK 206 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe
Confidence 3445666 456777777778899999998877666552 1 2346677776 45555445556677777887763
Q ss_pred CceEEEeec-------------CCCCCeeEEEEccCCC
Q 008356 156 QPLTVLRAC-------------SSSEAVSSLCWQRAKP 180 (568)
Q Consensus 156 ~~v~~l~~~-------------~h~~~VtsLafspdg~ 180 (568)
....+... ......+.|+|+|..+
T Consensus 207 -V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 207 -VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp -EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred -EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 33333211 1135688999988643
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.16 E-value=1.4 Score=48.06 Aligned_cols=196 Identities=11% Similarity=0.058 Sum_probs=91.6
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----CceeEEeeC---CC---CCcEEEEEEccCCCeEEEEEe--CC----CeEEEEEC
Q 008356 5 KDEHLASIS-LSGDLILHNLAS----GAKAAELKD---PN---EQVLRVLDYSRNSRHLLVTAG--DD----GTLHLWDT 67 (568)
Q Consensus 5 dG~~LasGs-~DG~V~VWDl~t----g~~v~~l~~---~h---~~~Vs~Lafspdg~~lLaTgs--~D----GtV~VWDl 67 (568)
+.++|++.+ ..+.|+|+|+.+ .+..+.+.. .. -..-..+..-|+|+ +++++- .+ |-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence 456787777 678999999873 334444432 00 01223455567887 666642 22 45888887
Q ss_pred CCCCceeEEecc--CCCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEECCCCceeeEeecC---
Q 008356 68 TGRSPKVSWLKQ--HSAPTAGISFSSDDKIIASVGL--------------------DKKLYTYDPGSRRPSSCITYE--- 122 (568)
Q Consensus 68 ~t~~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~--------------------DGtV~IWDlrt~~~v~~~~h~--- 122 (568)
++.+.+-.+... ....-+++-|.|..+.+++... -.+|.+||+.+.+.++.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 766643333222 2334577888998898888643 347999999999999998644
Q ss_pred CCeEEEEEecC--CCEEEEEE-cCCeEEEEEC-CCCCC-ceEEEeecC--C---------------CCCeeEEEEccCCC
Q 008356 123 APFSSLAFIDD--DWILTAGT-SNGRVVFYDI-RGKPQ-PLTVLRACS--S---------------SEAVSSLCWQRAKP 180 (568)
Q Consensus 123 ~~ItsLafsPd--g~~LasGs-~DG~V~VWDl-rt~~~-~v~~l~~~~--h---------------~~~VtsLafspdg~ 180 (568)
.....+.|..+ ..+=++|+ -...|..|-- +.+.- ..+++.... . ..-|+.|..+.|
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-- 322 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD-- 322 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT--
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC--
Confidence 23556777654 34333332 3445555543 22211 111111110 0 234677777776
Q ss_pred eEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 181 VFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 181 ~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
++.+++++-.+|.|+.||+....
T Consensus 323 ---------DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 ---------DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ---------S-EEEEEETTTTEEEEEE-SSTT
T ss_pred ---------CCEEEEEcccCCcEEEEecCCCC
Confidence 44456666779999999997533
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.2 Score=55.27 Aligned_cols=138 Identities=12% Similarity=0.143 Sum_probs=92.8
Q ss_pred EEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCe------EEEEEeCCCeEEEEECCCCCc-eeEEeccCC-
Q 008356 10 ASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRH------LLVTAGDDGTLHLWDTTGRSP-KVSWLKQHS- 81 (568)
Q Consensus 10 asGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~------lLaTgs~DGtV~VWDl~t~~~-~v~~l~~H~- 81 (568)
..+.....|+-.|++.|+.+.+.+- +.. |..+.+.|+.+. --+.|-.|..|.-||.+-... ++.+...|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 3455566788899999999998885 333 666778776531 124566788899999864332 233333332
Q ss_pred ---CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-eEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 82 ---APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS-SCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 82 ---~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v-~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
....|++-. ...+|++|+.+|.|++||- .+... ..+ +...+|..+....+|++|++.+ +..+.+-++.
T Consensus 428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 234444443 4557999999999999997 44333 223 5788999999999999987665 4566666664
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.1 Score=61.49 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=73.8
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeE---E
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFS---S 127 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~It---s 127 (568)
.++.|+..|.|-..|..++-.....-..-..+|++++|+.+|..++.|-.+|-|.+||+..+++++.+. +..+.. .
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 688899999999999887543333334456789999999999999999999999999999998888773 444433 3
Q ss_pred EEEecCCCEEEEEEcCCeEEEEEC
Q 008356 128 LAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 128 LafsPdg~~LasGs~DG~V~VWDl 151 (568)
+.+..++..++++...|. +|.+
T Consensus 181 v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEeCCCcEEEEccCCCc--eEEE
Confidence 444445567777777775 5544
No 378
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.02 E-value=5.4 Score=47.12 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCC-------cEEEEEEcc----------------CCCeEEEEEeCCCeE
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQ-------VLRVLDYSR----------------NSRHLLVTAGDDGTL 62 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~-------~Vs~Lafsp----------------dg~~lLaTgs~DGtV 62 (568)
+..|++++.++.|+-.|..+|+.+-.+...... .++.+.+.. +++ .++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~-rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR-RIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC-EEEEecCCCeE
Confidence 567888888999999999999988776542211 122233321 122 57778889999
Q ss_pred EEEECCCCCceeEEeccCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEECCCCceee
Q 008356 63 HLWDTTGRSPKVSWLKQHSAPTA-------------GISFSS--DDKIIASVGL----------DKKLYTYDPGSRRPSS 117 (568)
Q Consensus 63 ~VWDl~t~~~~v~~l~~H~~~Vt-------------slafsP--dg~~LaSgs~----------DGtV~IWDlrt~~~v~ 117 (568)
+-.|.++++.. .-.+..+.|. .+.-.| .+..++.++. +|.|+-+|.++|+.+.
T Consensus 273 iALDA~TGk~~--W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 273 IALDADTGKLC--EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEEECCCCCEE--EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999888732 2112222111 111123 3455666642 6889999999999887
Q ss_pred Eee
Q 008356 118 CIT 120 (568)
Q Consensus 118 ~~~ 120 (568)
.+.
T Consensus 351 ~~~ 353 (764)
T TIGR03074 351 AWD 353 (764)
T ss_pred EEe
Confidence 663
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.93 E-value=0.073 Score=52.96 Aligned_cols=104 Identities=13% Similarity=0.201 Sum_probs=56.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEE-EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CC
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVL-DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-AP 83 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~L-afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-~~ 83 (568)
+..+++|..+|.|++|++.--.............|.++ .-..++ .+.++++.||.|+.|++.-.+. +...-.|. ..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc-ceeEEeccCCceeeeccccCce-eeeeccccCCC
Confidence 35678899999999999862211111111122333332 222222 3889999999999999976652 33344454 33
Q ss_pred eEEEEEcCCCCEEEEE--eCCCeEEEEECC
Q 008356 84 TAGISFSSDDKIIASV--GLDKKLYTYDPG 111 (568)
Q Consensus 84 VtslafsPdg~~LaSg--s~DGtV~IWDlr 111 (568)
+..+.....++.|+.. +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 3333333333444444 444444444443
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.097 Score=61.63 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCce--eeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCC
Q 008356 92 DDKIIASVGLDKKLYTYDPGSRRP--SSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEA 169 (568)
Q Consensus 92 dg~~LaSgs~DGtV~IWDlrt~~~--v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~ 169 (568)
.+..++.|+..|.|...|.+..-. .+-....++|++++|+.+|.+++.|..+|.|.+||+... .+.+.+. .|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~-k~l~~i~--e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA-KILKVIT--EHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC-cceeeee--ecCCc
Confidence 456788899999999888876422 122245789999999999999999999999999999987 4566666 34455
Q ss_pred eeEEEE
Q 008356 170 VSSLCW 175 (568)
Q Consensus 170 VtsLaf 175 (568)
++.+-+
T Consensus 175 ~t~vi~ 180 (1206)
T KOG2079|consen 175 VTGVIF 180 (1206)
T ss_pred cceEEE
Confidence 555443
No 381
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.82 E-value=2.9 Score=44.46 Aligned_cols=146 Identities=15% Similarity=0.182 Sum_probs=79.0
Q ss_pred CCcEEEEEEccCCCeEEE-EEeCCC---eEEEEECCCCCceeEEeccCCCCe---EEEEEc-CCCC-EEEEEeCCC--eE
Q 008356 37 EQVLRVLDYSRNSRHLLV-TAGDDG---TLHLWDTTGRSPKVSWLKQHSAPT---AGISFS-SDDK-IIASVGLDK--KL 105 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLa-Tgs~DG---tV~VWDl~t~~~~v~~l~~H~~~V---tslafs-Pdg~-~LaSgs~DG--tV 105 (568)
...+..+.|.++++.+++ ...++. .+.++|..++...+.........| ..+.|. +++. +|.....|| .|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 456777899998873333 333333 367777766654433333333333 355665 6444 444555677 46
Q ss_pred EEEECCCCceeeEeecCCCeE-EEEEecCCCEEE-EEEcC----CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCC
Q 008356 106 YTYDPGSRRPSSCITYEAPFS-SLAFIDDDWILT-AGTSN----GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAK 179 (568)
Q Consensus 106 ~IWDlrt~~~v~~~~h~~~It-sLafsPdg~~La-sGs~D----G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg 179 (568)
+++|...+.........-.|. -+.|+++++.|+ ++..+ ..|...+++. ....+.+. ...+.-..+.|+|++
T Consensus 263 y~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~-~~~~~~LT--~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 263 YLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS-GGEPKCLT--CEDGDHYSASFSPDG 339 (353)
T ss_dssp EEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE-TTEEEESS--TTSSTTEEEEE-TTS
T ss_pred EEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC-CCCeEecc--CCCCCceEEEECCCC
Confidence 677777776544334555564 477888776655 44442 2455555551 22234443 222222589999999
Q ss_pred CeEEEe
Q 008356 180 PVFIDE 185 (568)
Q Consensus 180 ~~Las~ 185 (568)
++++..
T Consensus 340 ~y~v~~ 345 (353)
T PF00930_consen 340 KYYVDT 345 (353)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887644
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.79 E-value=1.1 Score=51.05 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=81.9
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 008356 6 DEHLASISLSG------DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK 73 (568)
Q Consensus 6 G~~LasGs~DG------~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWDl~t~~~~ 73 (568)
+.++++||.++ .|..||..++.......-.....-.+++... + .++++|+.| ..+..||...++
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~-- 360 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ-- 360 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc--
Confidence 45677788773 5888898776433222211222233344443 3 488999998 357888887765
Q ss_pred eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC-----eEEEEECCCCceeeEeecCCCeEEE-EEecCCCEEEEEEcCC--
Q 008356 74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK-----KLYTYDPGSRRPSSCITYEAPFSSL-AFIDDDWILTAGTSNG-- 144 (568)
Q Consensus 74 v~~l~~H~~~VtslafsP-dg~~LaSgs~DG-----tV~IWDlrt~~~v~~~~h~~~ItsL-afsPdg~~LasGs~DG-- 144 (568)
...+..-...-..+.... +|.+.++||.|| .|-.||.++.+-...-......... ...-+|.+.++|+.++
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 222222211112222222 688889999987 4778888776533222111121111 1222577888888654
Q ss_pred ----eEEEEECCCC
Q 008356 145 ----RVVFYDIRGK 154 (568)
Q Consensus 145 ----~V~VWDlrt~ 154 (568)
.|..||+.+.
T Consensus 441 ~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 441 NCLNSVECYDPETN 454 (571)
T ss_pred cccceEEEEcCCCC
Confidence 4788998875
No 383
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=1.9 Score=44.54 Aligned_cols=194 Identities=15% Similarity=0.168 Sum_probs=109.4
Q ss_pred EEEEECCCc-EEEEECCCCceeEEeeCCCCC-cEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCceeEEeccCC
Q 008356 9 LASISLSGD-LILHNLASGAKAAELKDPNEQ-VLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 9 LasGs~DG~-V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~~v~~l~~H~ 81 (568)
++.+-.-|+ ..++|....+....+...... ..-.=.|+++|+ +|+..-.| |.|-|||.+..-..+-.+..|.
T Consensus 83 vafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G 161 (366)
T COG3490 83 VAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG 161 (366)
T ss_pred EEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence 334444343 456777666654444321111 111236899998 55544333 7799999987766677888898
Q ss_pred CCeEEEEEcCCCCEEEEEeC------C------------CeEEEEECCCCceeeEee-----cCCCeEEEEEecCCCEEE
Q 008356 82 APTAGISFSSDDKIIASVGL------D------------KKLYTYDPGSRRPSSCIT-----YEAPFSSLAFIDDDWILT 138 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~------D------------GtV~IWDlrt~~~v~~~~-----h~~~ItsLafsPdg~~La 138 (568)
-....+.|.+||+.++.+.. | -.+.+.|-.+++.+.... +.-.|+.++..+||.+++
T Consensus 162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEE
Confidence 88899999999999987653 1 134555555555543331 334578888888887766
Q ss_pred EEEcCCeE----EEEECCCCCCceEEEeec-----CCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCC
Q 008356 139 AGTSNGRV----VFYDIRGKPQPLTVLRAC-----SSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPL 209 (568)
Q Consensus 139 sGs~DG~V----~VWDlrt~~~~v~~l~~~-----~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr 209 (568)
.+-..|.- -+.-...+..+++.+... .-...|-+|+.+.+ ++.+.++.-..+...+||..
T Consensus 242 gcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~-----------~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 242 GCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR-----------DGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred EEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc-----------CCeEEEecCCCCeEEEEEcC
Confidence 55443320 000111111222222211 01123444454432 45556666667888899987
Q ss_pred CCCcc
Q 008356 210 PSVTT 214 (568)
Q Consensus 210 ~~~~~ 214 (568)
.....
T Consensus 311 tG~vv 315 (366)
T COG3490 311 TGAVV 315 (366)
T ss_pred CCcEE
Confidence 75543
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.41 E-value=4.7 Score=45.54 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=85.5
Q ss_pred cEEEEECCCCceeEEeeCCCCCc--------EEEEEEccCCC--eEEEEEeCCCeEEEEECCCCCceeE-------Eec-
Q 008356 17 DLILHNLASGAKAAELKDPNEQV--------LRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGRSPKVS-------WLK- 78 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~--------Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~~~~v~-------~l~- 78 (568)
.|.-.|+++|+.+-.++..+.+. ..-+.+..+|+ .+++.+..+|.+++.|-.+++.+.. .+.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 57778999999887776533211 11133334554 5788999999999999988774210 010
Q ss_pred c---CC-CCe----------------------------EEEEEcCCCCEEEEEeC-------------------------
Q 008356 79 Q---HS-APT----------------------------AGISFSSDDKIIASVGL------------------------- 101 (568)
Q Consensus 79 ~---H~-~~V----------------------------tslafsPdg~~LaSgs~------------------------- 101 (568)
. .. .++ ..++++|+..+++....
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0 00 000 11455565544443322
Q ss_pred --------CCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 102 --------DKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 102 --------DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
-+.|.-+|+.+++.+.......+...-.+.-.+.+++.+..+|.++.+|.++++...
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 246888888888887766543332211122245677788889999999999996443
No 385
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.28 E-value=1.2 Score=51.10 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEec--CCCEEEEEEcCCeEEEEECC-----CC
Q 008356 84 TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFID--DDWILTAGTSNGRVVFYDIR-----GK 154 (568)
Q Consensus 84 VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsP--dg~~LasGs~DG~V~VWDlr-----t~ 154 (568)
+.-+.-+.-++..++-.....+.|||.+.+...... ...+.|.++.|.. +++.+++.+..+.|.+|.-. ..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 344444443443334334457999999988755444 4588999999974 78888888889999998542 11
Q ss_pred ---CCceEEEeecCCC-CCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 155 ---PQPLTVLRACSSS-EAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 155 ---~~~v~~l~~~~h~-~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
-.+++.+....|. .+|.+..|.++|..++.. ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------------GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------------GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--------------CCEEEEECC
Confidence 1233444333444 578888998877665554 566777763
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.23 E-value=3.3 Score=49.03 Aligned_cols=163 Identities=7% Similarity=0.102 Sum_probs=102.4
Q ss_pred EEEEECCCCceeEEeeCCCCCc---EEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEecc--CCC
Q 008356 18 LILHNLASGAKAAELKDPNEQV---LRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQ--HSA 82 (568)
Q Consensus 18 V~VWDl~tg~~v~~l~~~h~~~---Vs~Lafspdg~~lLaTgs----------~DGtV~VWDl~t~~~~v~~l~~--H~~ 82 (568)
++++|-++-+.++..+-...+. |..+.|..+...+++.|. ..|.|.||.+.... .++.... -.+
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAETVVKG 830 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeeeeecc
Confidence 5666665555444333222222 333457777455677664 34788888887622 1322222 234
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEE
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVL 161 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l 161 (568)
.|.++..- +|+++| +-...|++|+..+++.++.- .+..++..+.+.-.|..+++|.--+.+.+...+..+.....+
T Consensus 831 av~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 45544432 566665 44568999999988655544 677888899998899999999998888887776654334444
Q ss_pred eecCCCCCeeEEEEccCCCeEEE
Q 008356 162 RACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 162 ~~~~h~~~VtsLafspdg~~Las 184 (568)
...-+..+.+++.+-.+..++.+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred ehhhCccceeeEEEecCceEEee
Confidence 44457778888877665555443
No 387
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.22 E-value=1.1 Score=48.65 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=54.1
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee---------cCCCeEEEEEec-----CC---CEEEE
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT---------YEAPFSSLAFID-----DD---WILTA 139 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~---------h~~~ItsLafsP-----dg---~~Las 139 (568)
+....++|++++.+ |=-+++.|..+|.|.|.|+|....+.... ....++++.|.- |+ -+|++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 44456889999987 66789999999999999999887776532 233578888873 33 57889
Q ss_pred EEcCCeEEEEECC
Q 008356 140 GTSNGRVVFYDIR 152 (568)
Q Consensus 140 Gs~DG~V~VWDlr 152 (568)
|+..|.+.+|.+.
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 9999999999875
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.17 E-value=1.3 Score=50.43 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=82.3
Q ss_pred CCCEEEEEECC-C-----cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCe-----EEEEECCCCCce
Q 008356 5 KDEHLASISLS-G-----DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGT-----LHLWDTTGRSPK 73 (568)
Q Consensus 5 dG~~LasGs~D-G-----~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGt-----V~VWDl~t~~~~ 73 (568)
+|...++||.| | .+..||..+.+-.. +..-...... +....-+..+.+.|+.||. |-.||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~-- 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK-- 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCc--
Confidence 45677888888 3 57788877665222 1110111111 1111122348899999975 7788887765
Q ss_pred eEEeccCCCCeEEEEEcC-CCCEEEEEeCCC------eEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcCC
Q 008356 74 VSWLKQHSAPTAGISFSS-DDKIIASVGLDK------KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNG 144 (568)
Q Consensus 74 v~~l~~H~~~VtslafsP-dg~~LaSgs~DG------tV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~DG 144 (568)
.................. +++..+.||.++ .|..||..+++-...-. ....-..++. -++.+.++|+.|+
T Consensus 408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDG 486 (571)
T ss_pred ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccC
Confidence 222332333344444433 688888888665 57889988775433321 1111122222 2477888888776
Q ss_pred e-----EEEEECCCC
Q 008356 145 R-----VVFYDIRGK 154 (568)
Q Consensus 145 ~-----V~VWDlrt~ 154 (568)
. |..||+++.
T Consensus 487 ~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 487 TSALSSVERYDPETN 501 (571)
T ss_pred CCccceEEEEcCCCC
Confidence 3 788888876
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.13 E-value=3.4 Score=43.86 Aligned_cols=156 Identities=20% Similarity=0.295 Sum_probs=93.1
Q ss_pred CEEEEEECCCcEEEEECC-CCceeEE---eeCCCCC-cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE-Eecc-
Q 008356 7 EHLASISLSGDLILHNLA-SGAKAAE---LKDPNEQ-VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS-WLKQ- 79 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~-tg~~v~~---l~~~h~~-~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~-~l~~- 79 (568)
+.+.+-|.||.+.-..+. .|+.... +.....+ .+..-++...+.++++ -+.+|.|+--|+........ .+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCccccc
Confidence 457778889999998887 5654322 1111222 2323345555543444 68899999999877652211 1110
Q ss_pred ---------CCCCeEEEEEcCCCCEEEEE-e--CCC-------eEEEEECCCCceeeEeecCCCeEEEEEecCCC-EEEE
Q 008356 80 ---------HSAPTAGISFSSDDKIIASV-G--LDK-------KLYTYDPGSRRPSSCITYEAPFSSLAFIDDDW-ILTA 139 (568)
Q Consensus 80 ---------H~~~VtslafsPdg~~LaSg-s--~DG-------tV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~-~Las 139 (568)
-.+.-.-+++++..+.|++- . .++ .|.+||+.+++.+..+..+.++.+|..+.+.+ +|++
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 01223446777744444432 1 122 59999999999999998777899999999766 5544
Q ss_pred E-EcCCeEEEEECCCCCCceEEEeec
Q 008356 140 G-TSNGRVVFYDIRGKPQPLTVLRAC 164 (568)
Q Consensus 140 G-s~DG~V~VWDlrt~~~~v~~l~~~ 164 (568)
. ..++.|.+||..+++ .+..+...
T Consensus 307 ~~~~~~~l~v~D~~tGk-~~~~~~~l 331 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGK-LVRSIEQL 331 (342)
T ss_dssp EETTTTEEEEEETTT---EEEEE---
T ss_pred EcCCCCeEEEEeCcCCc-EEeehhcc
Confidence 4 457899999999983 44555433
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.06 E-value=0.98 Score=50.68 Aligned_cols=138 Identities=12% Similarity=0.188 Sum_probs=89.8
Q ss_pred cEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC----CCEEEEEeCCCeEEEEECCC
Q 008356 39 VLRVLDYSRNSRHLLVTAG--DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD----DKIIASVGLDKKLYTYDPGS 112 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs--~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd----g~~LaSgs~DGtV~IWDlrt 112 (568)
++..++|. ||++++++.- .+|.+++=|- ...+.-..|..+.|.|- .-.++.......|.+|.+.-
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGds--------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS--------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCCc--------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 56778997 5666777653 3444433221 12334456999999983 33566677778899998852
Q ss_pred -----CceeeEe--ecCC--C--eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCe
Q 008356 113 -----RRPSSCI--TYEA--P--FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPV 181 (568)
Q Consensus 113 -----~~~v~~~--~h~~--~--ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~ 181 (568)
.+.+... .... + -..+.|+|...+|++-..+..-.+++++.....++.- ....+-|.|.+|.+||+.
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCE
Confidence 2222111 1111 1 3468899999999988887777788887665433332 256788999999999999
Q ss_pred EEEecc
Q 008356 182 FIDETT 187 (568)
Q Consensus 182 Las~s~ 187 (568)
|+.+-+
T Consensus 170 LVVAvG 175 (671)
T PF15390_consen 170 LVVAVG 175 (671)
T ss_pred EEEEeC
Confidence 876633
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.00 E-value=4.8 Score=41.87 Aligned_cols=153 Identities=12% Similarity=0.182 Sum_probs=99.4
Q ss_pred CccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCcee------
Q 008356 1 MYNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKV------ 74 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v------ 74 (568)
.|||+.+.|++......-.|+=-.+|+.+..+.-..-.-...|+|..+++ +.++--.++.+.++.++......
T Consensus 92 Tynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~ 170 (316)
T COG3204 92 TYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDADTTVISAKVQK 170 (316)
T ss_pred eeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcCCccEEeccceE
Confidence 48999999888887777777766789988876542222234577887765 55555678888888875442111
Q ss_pred ---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eee--Ee-e-------cCCCeEEEEEec-CCCEEEE
Q 008356 75 ---SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSS--CI-T-------YEAPFSSLAFID-DDWILTA 139 (568)
Q Consensus 75 ---~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~--~~-~-------h~~~ItsLafsP-dg~~Las 139 (568)
......+.....++|.|....|+.+=+-.=+.||.+.... .+. .. . .-..+..+.|++ .+..|+.
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 1111114567889999977777777766656666554322 111 11 0 123467888887 4667777
Q ss_pred EEcCCeEEEEECCCC
Q 008356 140 GTSNGRVVFYDIRGK 154 (568)
Q Consensus 140 Gs~DG~V~VWDlrt~ 154 (568)
+.+++.|.-.|....
T Consensus 251 S~ESr~l~Evd~~G~ 265 (316)
T COG3204 251 SDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCceEEEEecCCC
Confidence 888888888888875
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.98 E-value=1.3 Score=44.51 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=66.3
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEE--CCCCCc----eeEEecc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 008356 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWD--TTGRSP----KVSWLKQ----HSAPTAGISFSSDDKIIASVGLDKKLYTY 108 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWD--l~t~~~----~v~~l~~----H~~~VtslafsPdg~~LaSgs~DGtV~IW 108 (568)
.-+.++|+.+.+.+.++-+.+-.|.-|| ..++.. .+..++. ..-..-.++...+|++.+++-..++|...
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 3456899988886777778888898888 444321 1112221 11123345556689999999999999999
Q ss_pred ECCCCceeeEee-cCCCeEEEEEec
Q 008356 109 DPGSRRPSSCIT-YEAPFSSLAFID 132 (568)
Q Consensus 109 Dlrt~~~v~~~~-h~~~ItsLafsP 132 (568)
|..+|+.+..+. ....|+++||--
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecC
Confidence 999999998884 466799999964
No 393
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.86 E-value=1.7 Score=50.32 Aligned_cols=150 Identities=9% Similarity=0.108 Sum_probs=93.1
Q ss_pred EEEEEeCCCeEEEEECCCCCcee-----EEe----------------ccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEE
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKV-----SWL----------------KQHSAPTAGISFSS--DDKIIASVGLDKKLYTY 108 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v-----~~l----------------~~H~~~VtslafsP--dg~~LaSgs~DGtV~IW 108 (568)
++++|. .+.|+||+.+...... ..+ ......|+.|.... +...|+.|.+||.|.+|
T Consensus 51 ~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Y 129 (717)
T PF08728_consen 51 LLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLAY 129 (717)
T ss_pred EEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEEE
Confidence 566654 6889999985432110 000 00223466665554 56788999999999999
Q ss_pred ECCC-------C-------------ceeeEeecCCCeEEEEEe--cCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCC
Q 008356 109 DPGS-------R-------------RPSSCITYEAPFSSLAFI--DDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSS 166 (568)
Q Consensus 109 Dlrt-------~-------------~~v~~~~h~~~ItsLafs--Pdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h 166 (568)
.++. . ++...+.....++.++++ ...++||+++....|.||-.............+.|
T Consensus 130 yt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~ 209 (717)
T PF08728_consen 130 YTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQH 209 (717)
T ss_pred EHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccccc
Confidence 7621 0 122333456789999999 77889999998888888866542211111112235
Q ss_pred CCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCC
Q 008356 167 SEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDP 208 (568)
Q Consensus 167 ~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDl 208 (568)
..-|.+|+|-++.. +..+...+++++-.|.+.+|++
T Consensus 210 ~hNIP~VSFl~~~~------d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 210 SHNIPNVSFLDDDL------DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccCCCeeEeecCCC------CCccceEEEEEeccCcEEEEEE
Confidence 66788999988521 0011135666777888888777
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.85 E-value=2.8 Score=43.50 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=75.6
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ-HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPS 116 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~-H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v 116 (568)
..+.++.|+|+.+.++++ .....-.||=-..+. .++.+.- .-.....|+|..++.+.++--.++.+.++.+.....+
T Consensus 86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gd-lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGD-LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcceEEEe-cCCCceEEEEecCCc-eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence 348999999999854444 444444444333333 2333221 1233456788878888888778888888877654221
Q ss_pred e-----Ee-----ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 117 S-----CI-----TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 117 ~-----~~-----~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
. .+ .+ ......++|.|....|.++-+..-+.||......
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 1 11 12 5678899999999999988888888888777543
No 395
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=0.31 Score=57.95 Aligned_cols=135 Identities=12% Similarity=0.023 Sum_probs=87.0
Q ss_pred cCCCCEEEEEE--CCCcEEEEECCCCcee-----EEeeC-----CCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 3 NCKDEHLASIS--LSGDLILHNLASGAKA-----AELKD-----PNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 3 SpdG~~LasGs--~DG~V~VWDl~tg~~v-----~~l~~-----~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
++|+...++.. .+-.|+.||+++-..- .-++. .......++.|+|.-....+.+..|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 45655544433 3337888998642211 11111 112345678899976645677888999999887654
Q ss_pred CceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe-----ecCCCeEEEEEecCCCEEEE
Q 008356 71 SPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI-----TYEAPFSSLAFIDDDWILTA 139 (568)
Q Consensus 71 ~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~-----~h~~~ItsLafsPdg~~Las 139 (568)
...+.. ......++|++|+|.|+.++.|-..|++.-|-..- +....+ .....|.||+|-....+|++
T Consensus 189 ~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 189 AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 432322 23456689999999999999999999998886543 222222 13578999999877666655
No 396
>PHA03098 kelch-like protein; Provisional
Probab=93.64 E-value=2.3 Score=47.73 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=69.8
Q ss_pred CCEEEEEECCC------cEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCCc
Q 008356 6 DEHLASISLSG------DLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRSP 72 (568)
Q Consensus 6 G~~LasGs~DG------~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~~ 72 (568)
+..++.||.++ .+..||..+.+.. .+.... ......+. -++ .+++.|+.+ ..+..||..++.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~--~~~-~lyv~GG~~~~~~~~~v~~yd~~~~~- 369 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTV--FNN-RIYVIGGIYNSISLNTVESWKPGESK- 369 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEE--ECC-EEEEEeCCCCCEecceEEEEcCCCCc-
Confidence 44556666542 5778887665532 221101 11112222 234 477888865 347788887654
Q ss_pred eeEEeccCCCC--eEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEc
Q 008356 73 KVSWLKQHSAP--TAGISFSSDDKIIASVGLD------KKLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 73 ~v~~l~~H~~~--VtslafsPdg~~LaSgs~D------GtV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~ 142 (568)
.........+ -.+++. -+++.++.||.+ ..+..||+.+.+-...-. ......++ ...++.+++.|+.
T Consensus 370 -W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~ 446 (534)
T PHA03098 370 -WREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGI 446 (534)
T ss_pred -eeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCc
Confidence 2222211111 112222 256777777732 358899988764332211 11111122 2235667777764
Q ss_pred C--------CeEEEEECCCC
Q 008356 143 N--------GRVVFYDIRGK 154 (568)
Q Consensus 143 D--------G~V~VWDlrt~ 154 (568)
+ ..+.+||+.+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred cCCCCCcccceEEEecCCCC
Confidence 3 23888998875
No 397
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.60 E-value=8.3 Score=41.71 Aligned_cols=174 Identities=11% Similarity=0.160 Sum_probs=85.2
Q ss_pred cEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeC---CCe-EEEEECCCCCceeEEeccCCC--CeEEEEEc
Q 008356 17 DLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGD---DGT-LHLWDTTGRSPKVSWLKQHSA--PTAGISFS 90 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~---DGt-V~VWDl~t~~~~v~~l~~H~~--~Vtslafs 90 (568)
.|...|+.+|+....+. ....+..+.|+|....+|+-|-+ +.. -+||-++........+..|.. .+.-=-|.
T Consensus 169 ~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred eEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 35556777777655555 34567778899988866666543 332 467776443323444444432 23444588
Q ss_pred CCCCEEEEEe-----CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCC----------------eEEEE
Q 008356 91 SDDKIIASVG-----LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNG----------------RVVFY 149 (568)
Q Consensus 91 Pdg~~LaSgs-----~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG----------------~V~VW 149 (568)
+||..|...+ .+..|.-+|+.+++....... .....+-.++||++++--+.|. .|+++
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~ 325 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLF 325 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEe
Confidence 8998877643 245788889998766443332 2455666677888776533332 46677
Q ss_pred ECCCCCCceEEEeec-------CCCCC--eeEEEEccCCCeEEEeccCCCCeEEE
Q 008356 150 DIRGKPQPLTVLRAC-------SSSEA--VSSLCWQRAKPVFIDETTCKAETALL 195 (568)
Q Consensus 150 Dlrt~~~~v~~l~~~-------~h~~~--VtsLafspdg~~Las~s~ssd~~~Ll 195 (568)
++..... ..+..+ .+... =....|+|||++++..++..+...++
T Consensus 326 ~~~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 326 DVEAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ETTTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ccccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 7765421 222211 11111 13578999988887665544444433
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=2.6 Score=43.70 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=82.7
Q ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCceeeEee-
Q 008356 44 DYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS-DDKIIASVGLDKK-LYTYDPGSRRPSSCIT- 120 (568)
Q Consensus 44 afspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP-dg~~LaSgs~DGt-V~IWDlrt~~~v~~~~- 120 (568)
...+++++.+++.+++|.+..- ..-......|+|+| ...-++.+-.-|+ ..++|....+...++.
T Consensus 42 f~~~dgs~g~a~~~eaGk~v~~------------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s 109 (366)
T COG3490 42 FDARDGSFGAATLSEAGKIVFA------------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS 109 (366)
T ss_pred eeccCCceeEEEEccCCceeee------------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec
Confidence 3455666666666666655321 11123344577777 4555666666664 5688988876655542
Q ss_pred cCC--CeEEEEEecCCCEEEEEEc-----CCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 121 YEA--PFSSLAFIDDDWILTAGTS-----NGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 121 h~~--~ItsLafsPdg~~LasGs~-----DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
.++ -.-.=.|+|||.+|++.-. .|.|-|||.+..-+.+-.+. .|.-....+.|.+||+.++..
T Consensus 110 ~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~--t~GiGpHev~lm~DGrtlvva 179 (366)
T COG3490 110 QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS--THGIGPHEVTLMADGRTLVVA 179 (366)
T ss_pred ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc--cCCcCcceeEEecCCcEEEEe
Confidence 111 2234469999999988544 37799999997655444444 566777889999999998876
No 399
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.50 E-value=2.1 Score=45.05 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=78.4
Q ss_pred CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCC------CCceeEEeccCCCCeEEEEE
Q 008356 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTG------RSPKVSWLKQHSAPTAGISF 89 (568)
Q Consensus 16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t------~~~~v~~l~~H~~~Vtslaf 89 (568)
|.|+.+|. .+..++.+.. +-..-+.|+|+|+++.++++=+..+.|+-|++.. +......+....+..-.++.
T Consensus 143 G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v 220 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV 220 (307)
T ss_pred ceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE
Confidence 33444443 4555554443 3345577999999985556556678899998862 11112223334566677888
Q ss_pred cCCCCEEEEEeCCC-eEEEEECCCCceeeEeecC-CCeEEEEEec-CCCEEEEEE
Q 008356 90 SSDDKIIASVGLDK-KLYTYDPGSRRPSSCITYE-APFSSLAFID-DDWILTAGT 141 (568)
Q Consensus 90 sPdg~~LaSgs~DG-tV~IWDlrt~~~v~~~~h~-~~ItsLafsP-dg~~LasGs 141 (568)
..+|++.+++..+| .|.+|+.. ++.+..+... ..+++++|-- +.+.|++.+
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 88888886555554 89999988 8888777654 7788888863 344544443
No 400
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.48 E-value=1.5 Score=46.57 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=79.7
Q ss_pred ccCCCCEEEEE--ECCC---cEEEEECCCCceeEEeeCCCCC---cEEEEEEc-cCCCeEEEEEeCCCeEEEEECCCCCc
Q 008356 2 YNCKDEHLASI--SLSG---DLILHNLASGAKAAELKDPNEQ---VLRVLDYS-RNSRHLLVTAGDDGTLHLWDTTGRSP 72 (568)
Q Consensus 2 fSpdG~~LasG--s~DG---~V~VWDl~tg~~v~~l~~~h~~---~Vs~Lafs-pdg~~lLaTgs~DGtV~VWDl~t~~~ 72 (568)
|.++++.|+.. ..+. .+.++|..+++....+...... ....+.|. +++..++.....||.-+||-++....
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 56677634333 2222 3666777776654333322222 22245554 77777888878898766665543332
Q ss_pred eeEEeccCCCCeEE-EEEcCCCCEE-EEEeCC----CeEEEEECC-CCceeeEeecCCCe-EEEEEecCCCEEEEEEc
Q 008356 73 KVSWLKQHSAPTAG-ISFSSDDKII-ASVGLD----KKLYTYDPG-SRRPSSCITYEAPF-SSLAFIDDDWILTAGTS 142 (568)
Q Consensus 73 ~v~~l~~H~~~Vts-lafsPdg~~L-aSgs~D----GtV~IWDlr-t~~~v~~~~h~~~I-tsLafsPdg~~LasGs~ 142 (568)
..+.+....-.|.. +.|+++++.| +++..+ ..|+..++. .+. +..+...... ..+.|+|++++++....
T Consensus 271 ~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 271 KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 35567767777855 6677866655 455542 367777777 444 4444433333 59999999998876543
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.42 E-value=0.065 Score=61.95 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=65.9
Q ss_pred CcEEEEECC--CCceeEEe----eCCCCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEE
Q 008356 16 GDLILHNLA--SGAKAAEL----KDPNEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGI 87 (568)
Q Consensus 16 G~V~VWDl~--tg~~v~~l----~~~h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~Vtsl 87 (568)
|.+.|||+. .|+....+ .......+.-|.|+|- .+.++..+-.++.|++..++... ...++.|...+.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccH
Confidence 678899875 45543332 2223344455667663 22367777788889888876654 34566798888888
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 88 SFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 88 afsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
+|...|.+.+.+ ++|||..|+.+..||.|++|.+.
T Consensus 231 a~~~~g~~~l~~------------------------------lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS------------------------------LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HHHhhchhhhee------------------------------eCCCCcEEEEeecCCccceeeee
Confidence 876544332221 66777777777777777777654
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.37 E-value=3.5 Score=44.16 Aligned_cols=139 Identities=15% Similarity=0.211 Sum_probs=77.2
Q ss_pred EEEEEEccCCCeEEEEEe-----------CCC-eEEEEECCCC--C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 008356 40 LRVLDYSRNSRHLLVTAG-----------DDG-TLHLWDTTGR--S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKK 104 (568)
Q Consensus 40 Vs~Lafspdg~~lLaTgs-----------~DG-tV~VWDl~t~--~-~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGt 104 (568)
...|+|.++|+ ++++-. ..+ .|.+++-..+ . .....+.......+.+++.+++ +++ +.....
T Consensus 16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 34589999998 555432 223 6777764322 1 1233444444567889999888 444 444443
Q ss_pred EEEEECCCC-----ceeeE---eec-----CCCeEEEEEecCCCEEEEEEcC-------------------CeEEEEECC
Q 008356 105 LYTYDPGSR-----RPSSC---ITY-----EAPFSSLAFIDDDWILTAGTSN-------------------GRVVFYDIR 152 (568)
Q Consensus 105 V~IWDlrt~-----~~v~~---~~h-----~~~ItsLafsPdg~~LasGs~D-------------------G~V~VWDlr 152 (568)
+++.|.... +.... +.. ......++|.|||++.++-+.. |.|.-+|.+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 344455321 21111 211 3447789999999876654421 446666666
Q ss_pred CCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 153 GKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 153 t~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
+.. .+++. .+ ..-...++|+++|.++++.
T Consensus 173 g~~--~e~~a-~G-~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 173 GGK--LRVVA-HG-FQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CCe--EEEEe-cC-cCCCccceECCCCCEEEEc
Confidence 542 23332 22 2335678999988776655
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.95 E-value=14 Score=38.86 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=71.5
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-Cc
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS-RR 114 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt-~~ 114 (568)
....+..+.-.++++ +++++..-..+.-||--...- ...-+.-..+|..|.|.|++.+.+.+ ..|.|+.=|... ..
T Consensus 143 ~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCCc-EEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 456788888889987 666665544455777533321 22223356789999999998776644 888888877221 11
Q ss_pred eeeE--e---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEe-ecCCCCCeeEEEEccCCCeEEEe
Q 008356 115 PSSC--I---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLR-ACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 115 ~v~~--~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~-~~~h~~~VtsLafspdg~~Las~ 185 (568)
.... . .....+..++|.+++...++|+. | ..++..+.++. .+..+ ...-..-++.|.|....+-++.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G-~l~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-G-TLLVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCC-c-cEEEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEEEC
Confidence 1111 1 12334889999998877776654 4 34455555532 23222 11234457888887654444444
No 404
>PRK10115 protease 2; Provisional
Probab=92.92 E-value=23 Score=41.40 Aligned_cols=106 Identities=9% Similarity=-0.005 Sum_probs=63.5
Q ss_pred ccCCCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCC
Q 008356 2 YNCKDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD-----GTLHLWDTTGRS 71 (568)
Q Consensus 2 fSpdG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D-----GtV~VWDl~t~~ 71 (568)
++|||++|+.+-.. -.|++.|+.+|+.+..... . .. ..++|.++++.++++..++ ..|+.+++.+..
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-N-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-C-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 68999988876432 3588999988864322211 1 11 4489999998677765533 368888887662
Q ss_pred c-eeEEeccCCCCeEEEEEcC-CCCEEEEEe---CCCeEEEEEC
Q 008356 72 P-KVSWLKQHSAPTAGISFSS-DDKIIASVG---LDKKLYTYDP 110 (568)
Q Consensus 72 ~-~v~~l~~H~~~VtslafsP-dg~~LaSgs---~DGtV~IWDl 110 (568)
. ....+........-..+.+ ++++++..+ .++.+.+|+.
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 1 2223333333333223334 777766544 3457888885
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.91 E-value=2 Score=47.00 Aligned_cols=127 Identities=11% Similarity=0.030 Sum_probs=65.0
Q ss_pred CCcEEEEECCCCceeEEeeCCCCC-cEEEEEEccC--CCeEEEEEeCCCeEEEEEC-CCCCc---eeEEecc--------
Q 008356 15 SGDLILHNLASGAKAAELKDPNEQ-VLRVLDYSRN--SRHLLVTAGDDGTLHLWDT-TGRSP---KVSWLKQ-------- 79 (568)
Q Consensus 15 DG~V~VWDl~tg~~v~~l~~~h~~-~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl-~t~~~---~v~~l~~-------- 79 (568)
..+|.+||+.+.+.++.+.-..++ ..-.|.|.++ ..+-|+.+.-..+|..|-- +.++- ++..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 457999999999999998865443 3345666544 4444565556666665544 32221 1111111
Q ss_pred ---------CCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc---eeeEeec-----------------CCCeEEEE
Q 008356 80 ---------HSAPTAGISFSSDDKIIASVG-LDKKLYTYDPGSRR---PSSCITY-----------------EAPFSSLA 129 (568)
Q Consensus 80 ---------H~~~VtslafsPdg~~LaSgs-~DGtV~IWDlrt~~---~v~~~~h-----------------~~~ItsLa 129 (568)
-..-|++|..+.|+++|...+ .+|.|+.||+.... .+..+.. .+...-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 135589999999888886554 79999999998743 2222211 12346778
Q ss_pred EecCCCEEEEEE
Q 008356 130 FIDDDWILTAGT 141 (568)
Q Consensus 130 fsPdg~~LasGs 141 (568)
++-||+.|++..
T Consensus 381 lS~DGkRlYvTn 392 (461)
T PF05694_consen 381 LSLDGKRLYVTN 392 (461)
T ss_dssp E-TTSSEEEEE-
T ss_pred EccCCeEEEEEe
Confidence 888888887764
No 406
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.78 E-value=0.36 Score=36.32 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356 80 HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (568)
Q Consensus 80 H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~ 115 (568)
....|.+++|+|...+|+.+..||.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 4443
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.47 E-value=0.43 Score=35.90 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=29.6
Q ss_pred cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 121 h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
....|.+++|+|...+||.+..+|.|.||.+..
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 456799999999999999999999999999843
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.38 E-value=3.1 Score=47.82 Aligned_cols=107 Identities=17% Similarity=0.316 Sum_probs=71.3
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECC-----CC--
Q 008356 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPG-----SR-- 113 (568)
Q Consensus 43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlr-----t~-- 113 (568)
+.-+.-++ +.++-.....+.|||...............+.|.+++|.. +++.|++.|..+.|.+|--. ..
T Consensus 35 i~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 44444444 3333344457999999877633333335578899999975 99999999999999998542 11
Q ss_pred --ceeeEe---ec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 114 --RPSSCI---TY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 114 --~~v~~~---~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
.++..+ .+ ..+|.+..|.++|..++..+ +.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 223333 23 36899999999986665443 578888754
No 409
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.38 E-value=16 Score=38.21 Aligned_cols=141 Identities=10% Similarity=0.065 Sum_probs=92.4
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~ 115 (568)
...+.+++++.+ +.+.+.++.-++|.|+.+...+...-. ...+.-.++..+ |++...+..|.-+.++|+.+.+.
T Consensus 86 ~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCC
Confidence 455667777754 677778888899999977654332211 122444555554 88888888666688889987543
Q ss_pred eeE---ee-cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 116 SSC---IT-YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 116 v~~---~~-h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
-.. .. ....-..++.+ |++-..+..|+-+.|.|+.....|..+-+ ..-...+.++..+++.-+++..
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~-~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGS-YNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEE-EecCCceEEEEecCCeeEEEEc
Confidence 322 22 22233566666 77888888999999999998766644322 2233378888888876666554
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.22 E-value=4.5 Score=45.66 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=74.1
Q ss_pred CcEEEEEEccCC----CeEEEEEeCCCeEEEEECCC-----CCceeEEeccC----CCCeEEEEEcCCCCEEEEEeCCCe
Q 008356 38 QVLRVLDYSRNS----RHLLVTAGDDGTLHLWDTTG-----RSPKVSWLKQH----SAPTAGISFSSDDKIIASVGLDKK 104 (568)
Q Consensus 38 ~~Vs~Lafspdg----~~lLaTgs~DGtV~VWDl~t-----~~~~v~~l~~H----~~~VtslafsPdg~~LaSgs~DGt 104 (568)
+.|..+.|.|-+ . -+++......|.||.+.. ++......... .---..+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~p-aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTP-ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCC-ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 568889999863 3 355567788999999841 22111111111 112356789998888777665555
Q ss_pred EEEEECCCC--ceeeEeecCCCeEEEEEecCCCEEEEEEcC-CeEEEEECCC
Q 008356 105 LYTYDPGSR--RPSSCITYEAPFSSLAFIDDDWILTAGTSN-GRVVFYDIRG 153 (568)
Q Consensus 105 V~IWDlrt~--~~v~~~~h~~~ItsLafsPdg~~LasGs~D-G~V~VWDlrt 153 (568)
-.+++++.. +...-+...+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 556666543 333445778899999999999988776443 3467787543
No 411
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.19 E-value=0.018 Score=62.68 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=94.5
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec-cC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK-QH 80 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~-~H 80 (568)
|-+.+.-++.++.+..|..||- .++..-+.. .....-+++|..+++.+++.+-..+.+.+||+........... .|
T Consensus 42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred EecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 4566666888888888888884 444444433 2233445899999987888888999999999976542111111 12
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee-cCCCeEEEEEecCCCEEEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT-YEAPFSSLAFIDDDWILTA 139 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~-h~~~ItsLafsPdg~~Las 139 (568)
.... +.|++....++.+...|.+.+|+..+.+.+...+ |..++.++++.+.+..+..
T Consensus 119 s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 119 SKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred hHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 2222 6788888888888899999999998877766665 8899999999987655443
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=3.6 Score=47.46 Aligned_cols=49 Identities=20% Similarity=0.437 Sum_probs=35.2
Q ss_pred EEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Q 008356 18 LILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 18 V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~ 70 (568)
|+||+. .|+.+..+.-.|...| .+.|+.+.. |++...||++++|++.+.
T Consensus 66 I~If~~-sG~lL~~~~w~~~~lI-~mgWs~~ee--LI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 66 IRIFNI-SGQLLGRILWKHGELI-GMGWSDDEE--LICVQKDGTVHVYGLLGE 114 (829)
T ss_pred EEEEec-cccchHHHHhcCCCee-eecccCCce--EEEEeccceEEEeecchh
Confidence 666775 5666655554455555 489998875 777799999999998543
No 413
>PHA02713 hypothetical protein; Provisional
Probab=91.82 E-value=1.5 Score=49.77 Aligned_cols=142 Identities=9% Similarity=0.102 Sum_probs=74.9
Q ss_pred CCCEEEEEECCC-----cEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCC-----------------
Q 008356 5 KDEHLASISLSG-----DLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----------------- 60 (568)
Q Consensus 5 dG~~LasGs~DG-----~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----------------- 60 (568)
+|+..+.||.++ .|..||..+.+-. ..+... ......+. -++. +.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~--~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCV--LDQY-IYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEE--ECCE-EEEEeCCCcccccccccccccccccc
Confidence 456667777654 4788998765422 122111 11111122 2344 777777653
Q ss_pred ------eEEEEECCCCCceeEEeccC-CCCeE-EEEEcCCCCEEEEEeCC------CeEEEEECCC-Cceee--EeecCC
Q 008356 61 ------TLHLWDTTGRSPKVSWLKQH-SAPTA-GISFSSDDKIIASVGLD------KKLYTYDPGS-RRPSS--CITYEA 123 (568)
Q Consensus 61 ------tV~VWDl~t~~~~v~~l~~H-~~~Vt-slafsPdg~~LaSgs~D------GtV~IWDlrt-~~~v~--~~~h~~ 123 (568)
.|..||..+.+ ...+..- ..... +++. -++++.+.|+.+ ..|..||.++ .+-.. .+....
T Consensus 427 ~~~~~~~ve~YDP~td~--W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNI--WETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCCCe--EeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 47778877654 2222211 11111 1222 256777777754 2467899887 44332 222221
Q ss_pred -CeEEEEEecCCCEEEEEEcCC--eEEEEECCCCC
Q 008356 124 -PFSSLAFIDDDWILTAGTSNG--RVVFYDIRGKP 155 (568)
Q Consensus 124 -~ItsLafsPdg~~LasGs~DG--~V~VWDlrt~~ 155 (568)
....+++ ++++.++|+.++ .+..||+.+.+
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 2222222 578888999888 67888888763
No 414
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.78 E-value=13 Score=39.10 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=91.3
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCe------EEEEECCCC--C-cee-----EEeccCCC--------CeEEEEEcCCC
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGT------LHLWDTTGR--S-PKV-----SWLKQHSA--------PTAGISFSSDD 93 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGt------V~VWDl~t~--~-~~v-----~~l~~H~~--------~VtslafsPdg 93 (568)
.-+.++.|.+.+++. .+++.+++|. ++.+++... . ..+ ..+..-.+ ..-+|++.+++
T Consensus 18 ~~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 345678899997555 5777788888 766666431 1 001 11111111 34478886688
Q ss_pred CEEEEEeCC------CeEEEEECCCCceeeEe----------------ecCCCeEEEEEecCCCEEEEEEcC-----C--
Q 008356 94 KIIASVGLD------KKLYTYDPGSRRPSSCI----------------TYEAPFSSLAFIDDDWILTAGTSN-----G-- 144 (568)
Q Consensus 94 ~~LaSgs~D------GtV~IWDlrt~~~v~~~----------------~h~~~ItsLafsPdg~~LasGs~D-----G-- 144 (568)
.++++--.+ ..|+.+|.. ++.+..+ .....+..|+++|+|+.|+++.+. +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888887777 789999976 5543332 134468899999999977665442 2
Q ss_pred ---------eEEEEECCCCCCceEEEeec-C------CCCCeeEEEEccCCCeEEEe
Q 008356 145 ---------RVVFYDIRGKPQPLTVLRAC-S------SSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 145 ---------~V~VWDlrt~~~~v~~l~~~-~------h~~~VtsLafspdg~~Las~ 185 (568)
.|..||......+...+... . ....|..+.+-+++++++..
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 23445554422222322211 1 34678889999999888876
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.32 E-value=7.3 Score=41.67 Aligned_cols=136 Identities=13% Similarity=0.156 Sum_probs=71.1
Q ss_pred CccCCCCEEEEEE-----------CCC-cEEEEECCC--Cc--eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEE
Q 008356 1 MYNCKDEHLASIS-----------LSG-DLILHNLAS--GA--KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHL 64 (568)
Q Consensus 1 afSpdG~~LasGs-----------~DG-~V~VWDl~t--g~--~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~V 64 (568)
+|.++|+++++-. ..+ .|.+++-.+ |+ ....+.. .-...+.|++.+++ ++++ ......++
T Consensus 20 a~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~-~~~~i~~~ 95 (367)
T TIGR02604 20 CFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVA-TPPDILFL 95 (367)
T ss_pred eECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEe-CCCeEEEE
Confidence 4677888766542 223 677776443 33 2233332 22345678888876 4443 44443334
Q ss_pred EECCCC-----Cc--eeEEecc----CCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEECCCCc
Q 008356 65 WDTTGR-----SP--KVSWLKQ----HSAPTAGISFSSDDKIIASVGLD-------------------KKLYTYDPGSRR 114 (568)
Q Consensus 65 WDl~t~-----~~--~v~~l~~----H~~~VtslafsPdg~~LaSgs~D-------------------GtV~IWDlrt~~ 114 (568)
.|.+.. +. .+..+.. +....+.++|.||+++.++.+.. +.|.-+|..+++
T Consensus 96 ~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~ 175 (367)
T TIGR02604 96 RDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK 175 (367)
T ss_pred eCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe
Confidence 455321 11 1111222 13447889999999877765521 345555554443
Q ss_pred eeeEeec-CCCeEEEEEecCCCEEEEEE
Q 008356 115 PSSCITY-EAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 115 ~v~~~~h-~~~ItsLafsPdg~~LasGs 141 (568)
. ..+.. -.....++|+++|+++++-.
T Consensus 176 ~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 176 L-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred E-EEEecCcCCCccceECCCCCEEEEcc
Confidence 2 22222 22345778888877766543
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.22 E-value=5.8 Score=46.53 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cce---eeEe---------ecCCCeEEEEEecC---CCE
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGS----------RRP---SSCI---------TYEAPFSSLAFIDD---DWI 136 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt----------~~~---v~~~---------~h~~~ItsLafsPd---g~~ 136 (568)
-.|..|.++++|++++..|..+ |.|..+.. ++. .+.+ .....|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4588899999999999999877 44444421 111 1111 13346889999996 589
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEe
Q 008356 137 LTAGTSNGRVVFYDIRGKPQPLTVLR 162 (568)
Q Consensus 137 LasGs~DG~V~VWDlrt~~~~v~~l~ 162 (568)
|++=..|+.+++||+.....+..++.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 99999999999999987666666554
No 417
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.57 E-value=15 Score=38.39 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCce---eEEeeCC-CCCcEEEEEEccCCCeEEEEEeC-----CCeEEEEECCCC
Q 008356 5 KDEHLASISLS-----GDLILHNLASGAK---AAELKDP-NEQVLRVLDYSRNSRHLLVTAGD-----DGTLHLWDTTGR 70 (568)
Q Consensus 5 dG~~LasGs~D-----G~V~VWDl~tg~~---v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~-----DGtV~VWDl~t~ 70 (568)
++.+++.|+.+ ..+..||+.+.+. ...+..- ....-.+++.. ++ ++++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCC
Confidence 34555666654 3567777765542 1122110 11111122222 34 36777764 235888898766
Q ss_pred CceeEEecc--CCCCeEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceeeEeec---CCCe---EEE-EEecCCCEE
Q 008356 71 SPKVSWLKQ--HSAPTAGISFSSDDKIIASVGLDK----KLYTYDPGSRRPSSCITY---EAPF---SSL-AFIDDDWIL 137 (568)
Q Consensus 71 ~~~v~~l~~--H~~~VtslafsPdg~~LaSgs~DG----tV~IWDlrt~~~v~~~~h---~~~I---tsL-afsPdg~~L 137 (568)
+ ...+.. ........+..-++++.+.|+.++ .+.+||+++.+-...-.. ..+. ... +...+++++
T Consensus 150 ~--W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 150 E--WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred C--eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEE
Confidence 5 222221 111222222233677778887664 356889887653322111 1111 111 122356788
Q ss_pred EEEEcC
Q 008356 138 TAGTSN 143 (568)
Q Consensus 138 asGs~D 143 (568)
+.|+.+
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 888765
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.52 E-value=7.5 Score=39.49 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEE-CCCCCCce
Q 008356 83 PTAGISFSSDDKIIASVG---LDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD-IRGKPQPL 158 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs---~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWD-lrt~~~~v 158 (568)
.+...+++++++.++... ....|+++.... ..........+..-.|++++...++...+...+++. ........
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999887766 333566655433 233322445788889999988888877777777774 22222111
Q ss_pred EEEeecCCCCCeeEEEEccCCCeEEEe
Q 008356 159 TVLRACSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafspdg~~Las~ 185 (568)
..+....-.+.|..+.++|||..++.-
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEE
Confidence 222222222289999999999887655
No 419
>PHA02790 Kelch-like protein; Provisional
Probab=90.46 E-value=13 Score=41.42 Aligned_cols=139 Identities=13% Similarity=0.038 Sum_probs=68.9
Q ss_pred CCEEEEEECCC-----cEEEEECCCCceeE--EeeCCCCCcEEEEEEccCCCeEEEEEeCC--CeEEEEECCCCCceeEE
Q 008356 6 DEHLASISLSG-----DLILHNLASGAKAA--ELKDPNEQVLRVLDYSRNSRHLLVTAGDD--GTLHLWDTTGRSPKVSW 76 (568)
Q Consensus 6 G~~LasGs~DG-----~V~VWDl~tg~~v~--~l~~~h~~~Vs~Lafspdg~~lLaTgs~D--GtV~VWDl~t~~~~v~~ 76 (568)
+..+++||.++ .+..||..+++... .+.. ...... ++ .-++ .+.+.|+.+ ..+..||...+. ...
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~-~r~~~~-~v-~~~~-~iYviGG~~~~~sve~ydp~~n~--W~~ 345 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS-PRLYAS-GV-PANN-KLYVVGGLPNPTSVERWFHGDAA--WVN 345 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc-hhhcce-EE-EECC-EEEEECCcCCCCceEEEECCCCe--EEE
Confidence 34556676543 46778877654322 1211 111111 22 2244 477788764 358888876543 222
Q ss_pred eccCCCCeEEEE-EcCCCCEEEEEeCCC---eEEEEECCCCceeeEee--cCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 77 LKQHSAPTAGIS-FSSDDKIIASVGLDK---KLYTYDPGSRRPSSCIT--YEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 77 l~~H~~~Vtsla-fsPdg~~LaSgs~DG---tV~IWDlrt~~~v~~~~--h~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
+..-..+....+ ..-+++..+.||.++ .+..||.++.+-...-. ....-.+++ .-++++.+.| |.+.+||
T Consensus 346 ~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 346 MPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEec
Confidence 222221221111 122677778887654 47788987764332211 111111222 2346666666 4578899
Q ss_pred CCCC
Q 008356 151 IRGK 154 (568)
Q Consensus 151 lrt~ 154 (568)
+++.
T Consensus 422 p~~~ 425 (480)
T PHA02790 422 ESSN 425 (480)
T ss_pred CCCC
Confidence 8765
No 420
>PLN02153 epithiospecifier protein
Probab=90.22 E-value=22 Score=37.45 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=50.9
Q ss_pred eEEEEEeCC-----CeEEEEECCCCCceeEEeccC-----C-CCeEEEEEcCCCCEEEEEeCC-----------CeEEEE
Q 008356 51 HLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQH-----S-APTAGISFSSDDKIIASVGLD-----------KKLYTY 108 (568)
Q Consensus 51 ~lLaTgs~D-----GtV~VWDl~t~~~~v~~l~~H-----~-~~VtslafsPdg~~LaSgs~D-----------GtV~IW 108 (568)
.+++.|+.+ ..|.+||..+.+ ...+... . ......+..-++++++.|+.+ ..|.+|
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 477777754 357888987654 2222211 1 111111122256677777754 257788
Q ss_pred ECCCCceeeEeec----CCCe-EEEEEecCCCEEEEEEcC-------------CeEEEEECCCC
Q 008356 109 DPGSRRPSSCITY----EAPF-SSLAFIDDDWILTAGTSN-------------GRVVFYDIRGK 154 (568)
Q Consensus 109 Dlrt~~~v~~~~h----~~~I-tsLafsPdg~~LasGs~D-------------G~V~VWDlrt~ 154 (568)
|..+.+-...-.. .... .+++. -++++++.|+.+ ..|.+||+.+.
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~ 227 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG 227 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCC
Confidence 9887643322111 1111 12222 245666665432 45888998865
No 421
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.19 E-value=8.6 Score=35.55 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc--------eeEEeeCCCCCcEEEEEEcc----CCCeEEEEEeCCCeEEEEECCCCC
Q 008356 4 CKDEHLASISLSGDLILHNLASGA--------KAAELKDPNEQVLRVLDYSR----NSRHLLVTAGDDGTLHLWDTTGRS 71 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~--------~v~~l~~~h~~~Vs~Lafsp----dg~~lLaTgs~DGtV~VWDl~t~~ 71 (568)
...-.|+.+..-|+|.|++..... .+..+. -...|++|+--+ ++...|+.|+. ..|..||+..+.
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 334568888999999999876332 334443 345566665443 23336666655 678899998776
Q ss_pred ceeEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCceeeE
Q 008356 72 PKVSWLKQHSAPTAGISFSS---DDKIIASVGLDKKLYTYDPGSRRPSSC 118 (568)
Q Consensus 72 ~~v~~l~~H~~~VtslafsP---dg~~LaSgs~DGtV~IWDlrt~~~v~~ 118 (568)
. ...+.-.+.|+++.+-. ...-++..+.+..|.-||.+..+....
T Consensus 85 d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 85 D--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred h--hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 3 33445557788888743 234455566677788888776555444
No 422
>PHA03098 kelch-like protein; Provisional
Probab=89.96 E-value=7.9 Score=43.39 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=71.0
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC------CeEEEEECCCCCce
Q 008356 5 KDEHLASISLS-----GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD------GTLHLWDTTGRSPK 73 (568)
Q Consensus 5 dG~~LasGs~D-----G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D------GtV~VWDl~t~~~~ 73 (568)
+++.++.||.+ ..+..||..+.+-...-.-+....-.+++. -++ ++++.|+.+ ..+..||..+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~-- 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNK-- 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCe--
Confidence 45566777765 347778876654221111011111111222 234 477777732 458899987654
Q ss_pred eEEeccCCCC--eEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceeeEe--ecC-CCeEEEEEecCCCEEEEE
Q 008356 74 VSWLKQHSAP--TAGISFSSDDKIIASVGLD--------KKLYTYDPGSRRPSSCI--TYE-APFSSLAFIDDDWILTAG 140 (568)
Q Consensus 74 v~~l~~H~~~--VtslafsPdg~~LaSgs~D--------GtV~IWDlrt~~~v~~~--~h~-~~ItsLafsPdg~~LasG 140 (568)
...+.....+ -.++.. -+++.++.|+.+ ..+.+||..+++-...- ... .....+.+ ++++++.|
T Consensus 418 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~G 494 (534)
T PHA03098 418 WSKGSPLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVG 494 (534)
T ss_pred eeecCCCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEc
Confidence 2222111111 112222 256666777643 23889998876543221 111 11122222 56777777
Q ss_pred EcC-----CeEEEEECCCC
Q 008356 141 TSN-----GRVVFYDIRGK 154 (568)
Q Consensus 141 s~D-----G~V~VWDlrt~ 154 (568)
+.+ ..|.+||+.+.
T Consensus 495 G~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 495 GDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCcCCcccceeEEEeCCCC
Confidence 654 46888888765
No 423
>PRK10115 protease 2; Provisional
Probab=89.92 E-value=43 Score=39.21 Aligned_cols=112 Identities=7% Similarity=0.050 Sum_probs=68.7
Q ss_pred CcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEE
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLD------KKLYT 107 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~D------GtV~I 107 (568)
-.+..+.|+|+++.++++...+| .|++.|+.++......+.. .-..++|.+|++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34667889999995555544444 5889999876522222221 11569999988877666432 36888
Q ss_pred EECCCC--ceeeEee-cCCCeEEEEE-ecCCCEEEEEEc---CCeEEEEECC
Q 008356 108 YDPGSR--RPSSCIT-YEAPFSSLAF-IDDDWILTAGTS---NGRVVFYDIR 152 (568)
Q Consensus 108 WDlrt~--~~v~~~~-h~~~ItsLaf-sPdg~~LasGs~---DG~V~VWDlr 152 (568)
+++.++ +...++. .........+ ..++++++.... ++.+.+|+..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 899887 3333443 2333432333 337777766543 4568899854
No 424
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.58 E-value=27 Score=41.39 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE-------------EEEEcc--CCCeEEEEEeC----------CC
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-------------VLDYSR--NSRHLLVTAGD----------DG 60 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs-------------~Lafsp--dg~~lLaTgs~----------DG 60 (568)
+++|+.+..|+.|.-.|.++|+.+..+.. ++.|. .+.-.| .+. .+++|+. +|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCc
Confidence 45788898999999999999998876542 11110 000001 122 4555542 68
Q ss_pred eEEEEECCCCCceeEEeccC--------CCC--------e-EEEEEcCCCCEEEEEe------------------CCCeE
Q 008356 61 TLHLWDTTGRSPKVSWLKQH--------SAP--------T-AGISFSSDDKIIASVG------------------LDKKL 105 (568)
Q Consensus 61 tV~VWDl~t~~~~v~~l~~H--------~~~--------V-tslafsPdg~~LaSgs------------------~DGtV 105 (568)
.|+-+|..+++.....-... .+. + ..+.++++..+++.+. ..+.|
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 89999999888443322111 000 1 2234444434433321 23467
Q ss_pred EEEECCCCceeeEeec-CC---------CeEEEEEec-CCC---EEEEEEcCCeEEEEECCCCC
Q 008356 106 YTYDPGSRRPSSCITY-EA---------PFSSLAFID-DDW---ILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 106 ~IWDlrt~~~v~~~~h-~~---------~ItsLafsP-dg~---~LasGs~DG~V~VWDlrt~~ 155 (568)
.-.|.++++.+..++. .. ...-+.+.. +|+ .++.+.++|.++++|.++++
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 7788888888766632 11 111122322 453 78889999999999999885
No 425
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.41 E-value=20 Score=42.38 Aligned_cols=114 Identities=14% Similarity=0.210 Sum_probs=77.1
Q ss_pred CcEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----CceeEEeccCCC----------CeEEEEEcCCCCEEEEEeCCC
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGR----SPKVSWLKQHSA----------PTAGISFSSDDKIIASVGLDK 103 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~----~~~v~~l~~H~~----------~VtslafsPdg~~LaSgs~DG 103 (568)
....+++|+|.....||+....|...|||+... .........+.+ .-..+.|.++.+.|+.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~- 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS- 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-
Confidence 456779999988778999999999999999211 111222211222 23478898888888877754
Q ss_pred eEEEEECCCCceee-Ee--ecCCCeEEEEEecC--CCEEEEEEcCCeEEEEECCCC
Q 008356 104 KLYTYDPGSRRPSS-CI--TYEAPFSSLAFIDD--DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 104 tV~IWDlrt~~~v~-~~--~h~~~ItsLafsPd--g~~LasGs~DG~V~VWDlrt~ 154 (568)
.+.++|+++..... .. .....|..+.-++. +..++. ....|...|+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccCC
Confidence 58999999876533 22 35567888988886 333333 3367888888774
No 426
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=16 Score=36.44 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCceeEEeeCCC----CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 5 KDEHLASISL--SGDLILHNLASGAKAAELKDPN----EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 5 dG~~LasGs~--DG~V~VWDl~tg~~v~~l~~~h----~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
+|.++.+.+. ...|++||+.+|+.+.+..-.. .+.++. -++.+..-.-.+|...+||.++-++.-+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 3445555544 3479999999998876654321 222222 2333444456788888999877653222111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 008356 79 QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR 114 (568)
Q Consensus 79 ~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~ 114 (568)
.+.=..+ ..|++.|+.+....+++.-|.++-.
T Consensus 130 --~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 130 --EGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred --CCcceee--ecCCcceEeeCCceEEEecCHHHhh
Confidence 2222333 3456667777777788888876543
No 427
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.64 E-value=35 Score=35.94 Aligned_cols=204 Identities=14% Similarity=0.122 Sum_probs=110.5
Q ss_pred CccCCCCEEEEEECCCcEEEEECC------CC-ceeEEeeCC----CCCcEEEEEEccCCC-----------eEEEEEeC
Q 008356 1 MYNCKDEHLASISLSGDLILHNLA------SG-AKAAELKDP----NEQVLRVLDYSRNSR-----------HLLVTAGD 58 (568)
Q Consensus 1 afSpdG~~LasGs~DG~V~VWDl~------tg-~~v~~l~~~----h~~~Vs~Lafspdg~-----------~lLaTgs~ 58 (568)
+|+|.+.+-++....+...+||.. .. .++..+... .....+.+.|+.... ..|+.+++
T Consensus 29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 467777666666677889999986 12 223333321 123456666664322 23677899
Q ss_pred CCeEEEEECCCCCc----eeEEeccC-CCCe-EEEEEcC--CCCEEEEEe-CCCeEEEEECCCCceeeE--ee------c
Q 008356 59 DGTLHLWDTTGRSP----KVSWLKQH-SAPT-AGISFSS--DDKIIASVG-LDKKLYTYDPGSRRPSSC--IT------Y 121 (568)
Q Consensus 59 DGtV~VWDl~t~~~----~v~~l~~H-~~~V-tslafsP--dg~~LaSgs-~DGtV~IWDlrt~~~v~~--~~------h 121 (568)
||+|.-|.-.-... ....+... ...| ..+++.. .+.+|+.+. ..++|.+||-.-.+.... +. .
T Consensus 109 dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPag 188 (336)
T TIGR03118 109 DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAG 188 (336)
T ss_pred CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCC
Confidence 99999998532221 12222211 2333 3455543 345555544 677888888543322100 00 0
Q ss_pred CCC-----------eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCC
Q 008356 122 EAP-----------FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKA 190 (568)
Q Consensus 122 ~~~-----------ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd 190 (568)
..+ |+-..-.++.+.=+.|-.-|.|-+||+... .++.+...+.-...+.|+..|.. ...-.
T Consensus 189 yAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g~LNaPWG~a~APa~------FG~~s 260 (336)
T TIGR03118 189 YAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSGRLNAPWGLAIAPES------FGSLS 260 (336)
T ss_pred CCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCCcccCCceeeeChhh------hCCCC
Confidence 011 111111222222233444578999998875 33444433444556677776621 12345
Q ss_pred CeEEEEecCCCcEEcCCCCCCC
Q 008356 191 ETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 191 ~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
+.+|+..-.||+|..||.....
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 6788888889999999987544
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.43 E-value=29 Score=37.93 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=63.6
Q ss_pred eeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCc----eeEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 008356 32 LKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSP----KVSWLKQ--HSAPTAGISFSSDDKIIASVGLDKKL 105 (568)
Q Consensus 32 l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~----~v~~l~~--H~~~VtslafsPdg~~LaSgs~DGtV 105 (568)
+.......+..+.|.+++. ++ .++.+|.+..= .+.+.. ....... ....+.++.|.+++. ++.++.+|.+
T Consensus 275 ~~~~~~~~l~~v~~~~dg~-l~-l~g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v 350 (398)
T PLN00033 275 HNRASARRIQNMGWRADGG-LW-LLTRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGIL 350 (398)
T ss_pred ecCCCccceeeeeEcCCCC-EE-EEeCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcE
Confidence 3333456678899998887 44 44567776543 333220 1122221 223488899986655 5556677866
Q ss_pred EEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 008356 106 YTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFY 149 (568)
Q Consensus 106 ~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VW 149 (568)
.... ..++.-... .....+..+.|.++++.+++| .+|.|.-|
T Consensus 351 ~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 351 LRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 5543 334332222 234568899998776665555 56776655
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=88.41 E-value=37 Score=35.93 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=75.8
Q ss_pred CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 008356 36 NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP 115 (568)
Q Consensus 36 h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~ 115 (568)
....+.++.+.+++. ++..+..|.+..-.-..++.-......-...++++.+.++++.+++ +..|.+++=....+..
T Consensus 171 ~~g~~~~i~~~~~g~--~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 171 AAGVVRNLRRSPDGK--YVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred CcceEEEEEECCCCe--EEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCc
Confidence 345678899998875 4455566765432112222111112233467899999998887665 4567665433333332
Q ss_pred eeEee-----cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEee-cCCCCCeeEEEEccCCCeEEEe
Q 008356 116 SSCIT-----YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRA-CSSSEAVSSLCWQRAKPVFIDE 185 (568)
Q Consensus 116 v~~~~-----h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~-~~h~~~VtsLafspdg~~Las~ 185 (568)
-.... ....+..+.+.+++..+++| .+|.|. ...+.++ ..+.... ..-....+.+.|..+++.++.+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~-tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G 320 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK-TWEKDPVGEEVPSNFYKIVFLDPEKGFVLG 320 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC-CCeECCcCCCCCcceEEEEEeCCCceEEEC
Confidence 22111 12357888999887765554 567554 3444432 2222221 1122346677776655444444
No 430
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.38 E-value=21 Score=43.55 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=100.5
Q ss_pred ECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEcc-------CC-CeEEEEEe-----C----CCeEEEEECCC-----C
Q 008356 13 SLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSR-------NS-RHLLVTAG-----D----DGTLHLWDTTG-----R 70 (568)
Q Consensus 13 s~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafsp-------dg-~~lLaTgs-----~----DGtV~VWDl~t-----~ 70 (568)
+....|.+.+.++++.+..+.-...+.+.+++..- .+ +-+|++|. + -|.++|||+-. +
T Consensus 1001 ~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1001 GEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 34455677776666665555443455555555421 11 22566653 2 38899999822 2
Q ss_pred C------ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceeeEeecCCCeEEEEEecCCCEEEEEEcC
Q 008356 71 S------PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDP-GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN 143 (568)
Q Consensus 71 ~------~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDl-rt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D 143 (568)
+ .+....+...+.|..++=. +|.+ +++ ...+|.+|++ +....+-+--.+-++......--+++|+.|.--
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavceV-~G~l-~~~-~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ 1157 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVCEV-RGHL-LSS-QGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVM 1157 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEEEe-ccEE-EEc-cCcEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhh
Confidence 1 1122334566777776644 4544 333 3457999999 444443322233334333333346778888777
Q ss_pred CeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 144 GRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 144 G~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
..|.+.-.+........+..-...-.+.++.|--+| ....++.+..|+.|.+|-..|
T Consensus 1158 ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg----------~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1158 KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDG----------SNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred hceEEEEEccCceEEEEeecCCchhhceeeeeEEcC----------CeeEEEEEcCCCcEEEEEeCC
Confidence 777777666543323333211222346667766554 334556666788888875444
No 431
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.74 E-value=20 Score=42.18 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=48.9
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECC----------CCCceeEE----------eccCCCCeEEEEEcCC---CCE
Q 008356 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTT----------GRSPKVSW----------LKQHSAPTAGISFSSD---DKI 95 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~----------t~~~~v~~----------l~~H~~~VtslafsPd---g~~ 95 (568)
.|..|.++++|. +++..+..|.+.+ .+. .+...+.+ ...+...|..+.|+|. +.+
T Consensus 86 ~v~~i~~n~~g~-~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGS-LLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCC-EEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 477788999998 5666666554433 331 11111111 1134567999999994 689
Q ss_pred EEEEeCCCeEEEEECCCC
Q 008356 96 IASVGLDKKLYTYDPGSR 113 (568)
Q Consensus 96 LaSgs~DGtV~IWDlrt~ 113 (568)
|+.-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 432
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.60 E-value=2.1 Score=31.63 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCeEEEEEecCC---CEEEEEEcCCeEEEEECCC
Q 008356 123 APFSSLAFIDDD---WILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 123 ~~ItsLafsPdg---~~LasGs~DG~V~VWDlrt 153 (568)
+.|++++|+|+. .+|+..-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 5888888899999999995
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.82 E-value=3.7 Score=40.92 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=46.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeEe---------------ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 89 FSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---------------TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 89 fsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---------------~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
+..+++++++...+|.+++||+.+++.+..- .....|..+.+..+|.-|++- .+|..+.||...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 3346888999999999999999987654321 133557778888777665544 457788887765
Q ss_pred C
Q 008356 154 K 154 (568)
Q Consensus 154 ~ 154 (568)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 434
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.71 E-value=15 Score=34.02 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=68.0
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCc-------eeEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEC
Q 008356 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSP-------KVSWLKQHSAPTAGISFSS-----DDKIIASVGLDKKLYTYDP 110 (568)
Q Consensus 43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~-------~v~~l~~H~~~VtslafsP-----dg~~LaSgs~DGtV~IWDl 110 (568)
-+|..... .|+++..-|+|.|++...... .+..+. -...|++++--+ +...|+.|+ ...|..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 45666666 578888889999998753321 122222 345577776433 234555555 556999999
Q ss_pred CCCceeeEeecCCCeEEEEEec---CCCEEEEEEcCCeEEEEECCCC
Q 008356 111 GSRRPSSCITYEAPFSSLAFID---DDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 111 rt~~~v~~~~h~~~ItsLafsP---dg~~LasGs~DG~V~VWDlrt~ 154 (568)
....-+......+.++++.+-. ...-|+..+.+..|.-||.+..
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 9877665555667788887743 1233444445677777777665
No 435
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.66 E-value=55 Score=36.02 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=89.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCc-----eeEEeeCCCCCcEEEEEEcc---CCCeEEEEEeCCCeEEEEECCCC------
Q 008356 5 KDEHLASISLSGDLILHNLASGA-----KAAELKDPNEQVLRVLDYSR---NSRHLLVTAGDDGTLHLWDTTGR------ 70 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~tg~-----~v~~l~~~h~~~Vs~Lafsp---dg~~lLaTgs~DGtV~VWDl~t~------ 70 (568)
+...|++|+..|.++||+..... .+-+.+ -+.+|-.|+.-+ ..+.+.++.-.-..+.||.+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985433 222332 345666666543 22223444467788889988221
Q ss_pred --CceeEEeccCCC--CeEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEE
Q 008356 71 --SPKVSWLKQHSA--PTAGISFSS----D-DKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 71 --~~~v~~l~~H~~--~VtslafsP----d-g~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs 141 (568)
...+..+..|.- ....+++-| . ..+|++-+.||.+.+|+-+.-.....+..---...++|.+.-..|++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 122344444532 233344433 2 4678888999999999976544333333222234567888778888888
Q ss_pred cCCeEEEEEC
Q 008356 142 SNGRVVFYDI 151 (568)
Q Consensus 142 ~DG~V~VWDl 151 (568)
.+..|..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888888865
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.75 E-value=9.6 Score=41.91 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=81.0
Q ss_pred CCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce---eEEeccC
Q 008356 6 DEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQH 80 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~---v~~l~~H 80 (568)
.+..+.+-..|.+.=|.+.. ......+.-..++.|.+++|++|.+ +++.--.++.|.+++....+.+ .+..+..
T Consensus 33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k 111 (657)
T KOG2377|consen 33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK 111 (657)
T ss_pred CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence 33344444555566666542 2333444444567999999999987 8888889999999998554432 2333444
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceeeEe-ecCCCeEEEEEecCCCEEEEEE
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSR-RPSSCI-TYEAPFSSLAFIDDDWILTAGT 141 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~-~~v~~~-~h~~~ItsLafsPdg~~LasGs 141 (568)
...|....|..+ .-++.....| +-+|.+... +.++.. .+...|.=..|.++-+.++.++
T Consensus 112 ~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 112 NANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred cceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 556899999855 5566666555 455543322 222222 4566666677777665544443
No 437
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.58 E-value=21 Score=39.34 Aligned_cols=137 Identities=15% Similarity=0.177 Sum_probs=87.1
Q ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCC--ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE
Q 008356 41 RVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS--PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC 118 (568)
Q Consensus 41 s~Lafspdg~~lLaTgs~DGtV~VWDl~t~~--~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~ 118 (568)
+.+-|...+++++++ ..|.+.=|-+.... ..........++|.++.|++|.+.|++--.|.+|.+++....+....
T Consensus 26 ngvFfDDaNkqlfav--rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV--RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeeccCcceEEEE--ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 345555555533333 34555566654332 22334444567999999999999999999999999999854433322
Q ss_pred e--e---cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356 119 I--T---YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI 183 (568)
Q Consensus 119 ~--~---h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~La 183 (568)
. . ....|...+|..+ .-+|.....| |-+|.+...++.++... .|...|.-..|.++-+.+.
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEe
Confidence 2 1 2334888999876 5566655544 77777766555555555 5667788788888755543
No 438
>PLN02153 epithiospecifier protein
Probab=84.57 E-value=44 Score=35.08 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=68.1
Q ss_pred CCEEEEEECC-----CcEEEEECCCCcee--EEeeC---CCCCcEEEEEEccCCCeEEEEEeCC-----------CeEEE
Q 008356 6 DEHLASISLS-----GDLILHNLASGAKA--AELKD---PNEQVLRVLDYSRNSRHLLVTAGDD-----------GTLHL 64 (568)
Q Consensus 6 G~~LasGs~D-----G~V~VWDl~tg~~v--~~l~~---~h~~~Vs~Lafspdg~~lLaTgs~D-----------GtV~V 64 (568)
+++++.|+.+ ..|.+||+.+.+-. ..+.. .....-.+++. -++ ++++.|+.+ ..|.+
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEE
Confidence 4455566643 35778888664422 11110 11111222222 233 377777754 24778
Q ss_pred EECCCCCceeEEeccCC----CC-eEEEEEcCCCCEEEEEeCC-------------CeEEEEECCCCceeeEeec----C
Q 008356 65 WDTTGRSPKVSWLKQHS----AP-TAGISFSSDDKIIASVGLD-------------KKLYTYDPGSRRPSSCITY----E 122 (568)
Q Consensus 65 WDl~t~~~~v~~l~~H~----~~-VtslafsPdg~~LaSgs~D-------------GtV~IWDlrt~~~v~~~~h----~ 122 (568)
||..+.. ...+.... .+ -.+++. -++++++.++.+ ..|.+||+.+.+-...-.. .
T Consensus 164 yd~~~~~--W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~ 240 (341)
T PLN02153 164 YNIADGK--WVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS 240 (341)
T ss_pred EECCCCe--EeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCC
Confidence 8887654 22222111 11 112222 255666655432 3588899887654332211 1
Q ss_pred CCeEEEEEecCCCEEEEEEcC--------------CeEEEEECCCC
Q 008356 123 APFSSLAFIDDDWILTAGTSN--------------GRVVFYDIRGK 154 (568)
Q Consensus 123 ~~ItsLafsPdg~~LasGs~D--------------G~V~VWDlrt~ 154 (568)
......+..-++++++.|+.. ..|..||+.+.
T Consensus 241 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 241 ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 111111222246777777742 25777887654
No 439
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.36 E-value=64 Score=38.30 Aligned_cols=141 Identities=10% Similarity=0.155 Sum_probs=85.1
Q ss_pred CCCcEEEEEEc---cC--CCeEEEEEeCCCeEEEEECC------CCC--------ceeEEec---cCCCCeEEEEEcC-C
Q 008356 36 NEQVLRVLDYS---RN--SRHLLVTAGDDGTLHLWDTT------GRS--------PKVSWLK---QHSAPTAGISFSS-D 92 (568)
Q Consensus 36 h~~~Vs~Lafs---pd--g~~lLaTgs~DGtV~VWDl~------t~~--------~~v~~l~---~H~~~VtslafsP-d 92 (568)
...+|..|+|. .. .....+..-....+.|+... ... .++..+. ....+..+++|+| +
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45678888888 21 11123444555667777721 101 1122222 2344678899999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCC--c---eeeEe-ecCC----------CeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 93 DKIIASVGLDKKLYTYDPGSR--R---PSSCI-TYEA----------PFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 93 g~~LaSgs~DGtV~IWDlrt~--~---~v~~~-~h~~----------~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
.+.||.....|...|||+... . ..... ...+ ....+.|..+-+.|++++. ..+.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCc
Confidence 789999999999999999211 1 11111 1112 2347889888777777764 5789999998754
Q ss_pred ceEEEeecCCCCCeeEEEEccC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspd 178 (568)
... +........|..+.-++.
T Consensus 237 ~~~-l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 237 TEY-LVTAKTWSWILDVKRSPD 257 (765)
T ss_pred cch-hccCCChhheeeEEecCC
Confidence 221 222245567888887776
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.34 E-value=3.8 Score=30.30 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=27.0
Q ss_pred CcEEEEEEccCCC--eEEEEEeCCCeEEEEECCCC
Q 008356 38 QVLRVLDYSRNSR--HLLVTAGDDGTLHLWDTTGR 70 (568)
Q Consensus 38 ~~Vs~Lafspdg~--~lLaTgs~DGtV~VWDl~t~ 70 (568)
+.|++++|+|... .+|+-+-..|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999997543 58888888999999999853
No 441
>PRK13684 Ycf48-like protein; Provisional
Probab=84.04 E-value=38 Score=35.83 Aligned_cols=143 Identities=11% Similarity=0.092 Sum_probs=76.1
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEecc---
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQ--- 79 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~--- 79 (568)
.+++.++++ +..|.+..-.-..++.-..+.......+.++.+.++++ +++ .+..|.+++=..+.+.. ......
T Consensus 181 ~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~-vg~~G~~~~~s~d~G~s-W~~~~~~~~ 256 (334)
T PRK13684 181 SPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWM-LARGGQIRFNDPDDLES-WSKPIIPEI 256 (334)
T ss_pred CCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEE-EecCCEEEEccCCCCCc-cccccCCcc
Confidence 455554444 44555443211223333334444566788899999887 444 45668765422333321 111111
Q ss_pred -CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe----ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC
Q 008356 80 -HSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI----TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR 152 (568)
Q Consensus 80 -H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr 152 (568)
....+.++.+.+++.. +.++.+|.|.. ....++.-... .....+..+.|..+++.++ .+..|.|.-|+-.
T Consensus 257 ~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 257 TNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred ccccceeeEEEcCCCCE-EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecCC
Confidence 1234788899887664 45566775543 33333332222 1223577788887766655 4456888877643
No 442
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.75 E-value=0.3 Score=56.80 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=60.2
Q ss_pred CCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEE-----------EEEEccCCCeEEEEEeCCCeEEEEECCC-CC
Q 008356 4 CKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLR-----------VLDYSRNSRHLLVTAGDDGTLHLWDTTG-RS 71 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs-----------~Lafspdg~~lLaTgs~DGtV~VWDl~t-~~ 71 (568)
++.-++..+..++.|++.++.+... ..++. |...+. .-..+|||. .|+.+..||.++.|.+.- ++
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rs-Hs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRS-HSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHh-cCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 4445666677788888877654322 22333 322222 223688998 899999999999988731 11
Q ss_pred ---ceeEEeccCC-CCeEEEEEcCCC---------CEEEEE-eCCCeEEEEECCCCcee
Q 008356 72 ---PKVSWLKQHS-APTAGISFSSDD---------KIIASV-GLDKKLYTYDPGSRRPS 116 (568)
Q Consensus 72 ---~~v~~l~~H~-~~VtslafsPdg---------~~LaSg-s~DGtV~IWDlrt~~~v 116 (568)
...+.++.|. .+-.|.-|+.+. .+++++ ..+..+++|.....+|.
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 0134455665 333333233221 123333 34456778876655544
No 443
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.58 E-value=55 Score=33.37 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=81.0
Q ss_pred CcEEEEEEccCCCeEEEEEe----------CCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEE
Q 008356 38 QVLRVLDYSRNSRHLLVTAG----------DDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV-GLDKKLY 106 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs----------~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg-s~DGtV~ 106 (568)
...++-..+|+|+ + +.|. ..|.++.|-.... +..+...-..-+.++|+.+.+.+... +.+-.|.
T Consensus 109 nR~NDgkvdP~Gr-y-y~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 109 NRLNDGKVDPDGR-Y-YGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred cccccCccCCCCc-e-eeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 3456667889998 3 3332 1244555554433 22233334445789999877766544 5667887
Q ss_pred EEE--CCCCcee-----eEeec----C-CCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEE
Q 008356 107 TYD--PGSRRPS-----SCITY----E-APFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLC 174 (568)
Q Consensus 107 IWD--lrt~~~v-----~~~~h----~-~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLa 174 (568)
-|| +.+|... ..+.. + -....+++.-+|++.++.-..++|...|+.+++. +..+.. ....|+++|
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~-L~eikl--Pt~qitscc 260 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI-LLEIKL--PTPQITSCC 260 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE-EEEEEc--CCCceEEEE
Confidence 787 5555322 11211 1 1234566677899999888999999999999854 444442 367789998
Q ss_pred Ec
Q 008356 175 WQ 176 (568)
Q Consensus 175 fs 176 (568)
|-
T Consensus 261 Fg 262 (310)
T KOG4499|consen 261 FG 262 (310)
T ss_pred ec
Confidence 84
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.17 E-value=17 Score=40.58 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=87.6
Q ss_pred CEEE-EEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCC-------eEEEEEeCCCeEEEEECCCCCceeEEec
Q 008356 7 EHLA-SISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSR-------HLLVTAGDDGTLHLWDTTGRSPKVSWLK 78 (568)
Q Consensus 7 ~~La-sGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~-------~lLaTgs~DGtV~VWDl~t~~~~v~~l~ 78 (568)
.+|+ .|+....++-.|++.|+.+.+... +... .+.|.|..+ +.|+--+ |..|.--|.+-...++. ..
T Consensus 480 sli~~dg~~~~kLykmDIErGkvveeW~~-~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~-v~ 554 (776)
T COG5167 480 SLIYLDGGERDKLYKMDIERGKVVEEWDL-KDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIK-VV 554 (776)
T ss_pred ceEEecCCCcccceeeecccceeeeEeec-CCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCCcee-ee
Confidence 3443 355566788889999999988886 3333 367877532 2344334 44444445533222222 12
Q ss_pred cCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeeEe-ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 79 QHSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGSRRPSSCI-TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 79 ~H~~~VtslafsP----dg~~LaSgs~DGtV~IWDlrt~~~v~~~-~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.....++.-.|+. ...+|+.++..|.|++||--..+....+ .....|..+....+|+++++.+. ..+.+-|++-
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 2222333333432 4568999999999999996543333333 56778999999999998887765 5677878763
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.12 E-value=13 Score=41.35 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=79.1
Q ss_pred cCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEECCC-CceeeE
Q 008356 47 RNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDK-------IIASVGLDKKLYTYDPGS-RRPSSC 118 (568)
Q Consensus 47 pdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~-------~LaSgs~DGtV~IWDlrt-~~~v~~ 118 (568)
.+..-++..|..-..++-.|+..++ .+..+..|..- -+.|.|+.+ .-+.|-.+..|.-.|.|- +..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 3444334455566678778887776 36666767664 466776421 223444555666667764 333333
Q ss_pred eecCCC-----eEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEE
Q 008356 119 ITYEAP-----FSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFID 184 (568)
Q Consensus 119 ~~h~~~-----ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las 184 (568)
...... ..|..-. ...++|+++..|-|++||--.. +....+. +....|..+....+|+++++
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~-rAKtalP--~lG~aIk~idvta~Gk~ila 620 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK-RAKTALP--GLGDAIKHIDVTANGKHILA 620 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehhhcc-hhhhcCc--ccccceeeeEeecCCcEEEE
Confidence 332332 3333332 3568999999999999996543 2223333 55678899999998888644
No 446
>PHA02790 Kelch-like protein; Provisional
Probab=83.03 E-value=24 Score=39.28 Aligned_cols=139 Identities=14% Similarity=0.041 Sum_probs=68.0
Q ss_pred CCCEEEEEECC--CcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCCceeEEe
Q 008356 5 KDEHLASISLS--GDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDG---TLHLWDTTGRSPKVSWL 77 (568)
Q Consensus 5 dG~~LasGs~D--G~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG---tV~VWDl~t~~~~v~~l 77 (568)
+|...++||.+ ..+..||..+++-. ..+... .... +++ .-+++ +.+.|+.++ .+..||..+.. ....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~-r~~~-~~~-~~~g~-IYviGG~~~~~~~ve~ydp~~~~--W~~~ 391 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP-RCNP-AVA-SINNV-IYVIGGHSETDTTTEYLLPNHDQ--WQFG 391 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC-Cccc-EEE-EECCE-EEEecCcCCCCccEEEEeCCCCE--EEeC
Confidence 45556667653 35778887654322 122211 1111 122 22444 778877654 47788886654 2221
Q ss_pred ccCCCC--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe--ecCCCeEEEEEecCCCEEEEEEcC-----CeEEE
Q 008356 78 KQHSAP--TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI--TYEAPFSSLAFIDDDWILTAGTSN-----GRVVF 148 (568)
Q Consensus 78 ~~H~~~--VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~--~h~~~ItsLafsPdg~~LasGs~D-----G~V~V 148 (568)
..-..+ -.+++ .-+++..+.|+ .+.+||.++++-...- .....-..++. -++++.++|+.+ ..|.+
T Consensus 392 ~~m~~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 392 PSTYYPHYKSCAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CCCCCccccceEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEE
Confidence 111111 11222 22455556553 5778998876543222 11111112222 256777888754 34777
Q ss_pred EECCCC
Q 008356 149 YDIRGK 154 (568)
Q Consensus 149 WDlrt~ 154 (568)
||+.+.
T Consensus 467 Yd~~~~ 472 (480)
T PHA02790 467 YNNRTY 472 (480)
T ss_pred EECCCC
Confidence 777765
No 447
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.96 E-value=97 Score=37.67 Aligned_cols=158 Identities=15% Similarity=0.171 Sum_probs=89.4
Q ss_pred cEEEEECCCCceeEEeeCCCC---CcEEEEEEccCCCe-EEEEEe-----------CCCeEEEEECCCCCceeEEeccCC
Q 008356 17 DLILHNLASGAKAAELKDPNE---QVLRVLDYSRNSRH-LLVTAG-----------DDGTLHLWDTTGRSPKVSWLKQHS 81 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~h~---~~Vs~Lafspdg~~-lLaTgs-----------~DGtV~VWDl~t~~~~v~~l~~H~ 81 (568)
.|+++|..+++.++.+.-..+ -.+..+.|+..... ++++|. .+|.++.|++-.....+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 488999888887766553222 23455666655443 333332 234577887733332333333222
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee--c-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCce
Q 008356 82 APTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT--Y-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPL 158 (568)
Q Consensus 82 ~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~--h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v 158 (568)
-+-.-.+..|-..++++ +....+++||+...++++... + ...|..+.+. +..+++|...-.|+++-.+...+.+
T Consensus 934 ~~~~v~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccceEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence 22222445664444443 445689999999887766552 2 4456676665 6788888877777776665544444
Q ss_pred EEEeecCCCCCeeEEEEcc
Q 008356 159 TVLRACSSSEAVSSLCWQR 177 (568)
Q Consensus 159 ~~l~~~~h~~~VtsLafsp 177 (568)
..+..-.-...|+++.+-.
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred EEEeCCCccceeeEEEEec
Confidence 4444333345566666543
No 448
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.75 E-value=64 Score=33.49 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=93.1
Q ss_pred cEEEEECCCCceeEEeeCC-----CCCcEEEEEEccCCC----eEEEEEe-CCCeEEEEECCCCCceeEEeccC------
Q 008356 17 DLILHNLASGAKAAELKDP-----NEQVLRVLDYSRNSR----HLLVTAG-DDGTLHLWDTTGRSPKVSWLKQH------ 80 (568)
Q Consensus 17 ~V~VWDl~tg~~v~~l~~~-----h~~~Vs~Lafspdg~----~lLaTgs-~DGtV~VWDl~t~~~~v~~l~~H------ 80 (568)
+|.+||+.+++.++.+.-+ ....+..+.+..... .+++.+. ..+-|.|||+.+++. .+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcceecc
Confidence 7899999999988776543 245677788776321 2444443 446899999987652 2221111
Q ss_pred -------------CCCeEEEEEcC---CCCEEEEEeCCC-eEEEEEC---CCCc---------eeeEeecC-CCeEEEEE
Q 008356 81 -------------SAPTAGISFSS---DDKIIASVGLDK-KLYTYDP---GSRR---------PSSCITYE-APFSSLAF 130 (568)
Q Consensus 81 -------------~~~VtslafsP---dg~~LaSgs~DG-tV~IWDl---rt~~---------~v~~~~h~-~~ItsLaf 130 (568)
...+..++.+| +++.|+.....+ .++-... ++.. .+..++.. .....+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12256666655 555666555443 2222221 1111 12233332 46778999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCCC--ceEEEeecCC-CCCeeEEEEcc--CCCeEE
Q 008356 131 IDDDWILTAGTSNGRVVFYDIRGKPQ--PLTVLRACSS-SEAVSSLCWQR--AKPVFI 183 (568)
Q Consensus 131 sPdg~~LasGs~DG~V~VWDlrt~~~--~v~~l~~~~h-~~~VtsLafsp--dg~~La 183 (568)
+++|.++++--..+.|..|+.++... ....+..-.. -..+..+.+.+ +|...+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEE
Confidence 99999888888999999999987321 1223322222 46778888888 554433
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.50 E-value=15 Score=45.15 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=83.2
Q ss_pred EECCCcEEEEECCCCceeEEeeCCCCCcEEEEE-------EccCCCeEEEEEeCCCeEEEEECC----CCCce----eEE
Q 008356 12 ISLSGDLILHNLASGAKAAELKDPNEQVLRVLD-------YSRNSRHLLVTAGDDGTLHLWDTT----GRSPK----VSW 76 (568)
Q Consensus 12 Gs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~La-------fspdg~~lLaTgs~DGtV~VWDl~----t~~~~----v~~ 76 (568)
...|+.+.+|+.+++.....+.+-....+...- |.+.=+++|+.+.. -.|.|+-+. +.... ...
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence 456889999999987766666652222222211 23334555555543 445555442 11100 112
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---c-e-----------------eeEe-ecCCCeEEEEEec
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYT--YDPGSR---R-P-----------------SSCI-TYEAPFSSLAFID 132 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~I--WDlrt~---~-~-----------------v~~~-~h~~~ItsLafsP 132 (568)
+......|+|+....+|+.+++|- ||.|+- |....+ + + .... .+..+|..+++..
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 223356688998776888776654 554432 222111 1 1 0111 3567899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCC
Q 008356 133 DDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 133 dg~~LasGs~DG~V~VWDlrt 153 (568)
..+++.+-+..|.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 889999999999999999986
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.44 E-value=7.1 Score=38.92 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=41.6
Q ss_pred ccCCCeEEEEEeCCCeEEEEECCCCCceeEE------ec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 008356 46 SRNSRHLLVTAGDDGTLHLWDTTGRSPKVSW------LK-------QHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGS 112 (568)
Q Consensus 46 spdg~~lLaTgs~DGtV~VWDl~t~~~~v~~------l~-------~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt 112 (568)
..++. ++++...+|.+++||+...+..+.. +. .....|..+.+..+|.-|++-+ +|..+.||..-
T Consensus 19 ~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 19 ECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 33455 6888899999999999877633221 11 2345567777776666666554 35667776543
No 451
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.07 E-value=70 Score=33.51 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=20.1
Q ss_pred CeEEEEECCCCCceeEEeccCC--C-CeEEEEEcCCCCEEEEEeCC
Q 008356 60 GTLHLWDTTGRSPKVSWLKQHS--A-PTAGISFSSDDKIIASVGLD 102 (568)
Q Consensus 60 GtV~VWDl~t~~~~v~~l~~H~--~-~VtslafsPdg~~LaSgs~D 102 (568)
..|.+||..+.. ...+.... . .-.+++ .-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~--W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQ--WRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCc--eeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 468889987665 22222211 1 112222 2357777777753
No 452
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=81.64 E-value=49 Score=35.17 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=79.3
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeeCCC-CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCC-Ce
Q 008356 7 EHLASISLSGDLILHNLASGAKAAELKDPN-EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSA-PT 84 (568)
Q Consensus 7 ~~LasGs~DG~V~VWDl~tg~~v~~l~~~h-~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~-~V 84 (568)
..+.++..+|.|.-+|.++++.+....... ...+..-.+..+|+ ++.++.++.++.+|..+++. +........ .+
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTL-VWSRNVGGSPYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcE-EEEEecCCCeEE
Confidence 455666788999999998888654333211 12222222333664 88889999899999876663 222222220 11
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCC----eEEEEEecCCCEEEEEEc--CCeEEEEECCCCC
Q 008356 85 AGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAP----FSSLAFIDDDWILTAGTS--NGRVVFYDIRGKP 155 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~----ItsLafsPdg~~LasGs~--DG~V~VWDlrt~~ 155 (568)
..-..- ....++.++.++.+...|-.+++.+........ +..--. -....++.+.. ++.+.-.|++.+.
T Consensus 146 ~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 146 ASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred ecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCc
Confidence 111111 233344444789999999998888766543321 111111 12334555555 5667777776653
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.99 E-value=26 Score=35.01 Aligned_cols=101 Identities=11% Similarity=0.163 Sum_probs=63.6
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEeCCC------eEEEE---ECC--CCceee--E
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVGLDK------KLYTY---DPG--SRRPSS--C 118 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs~DG------tV~IW---Dlr--t~~~v~--~ 118 (568)
.|+.+...+.|.+|++.........-...-+.|..+.++..|++|++--.+. .+|+| +.. ...++. .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 3444466788999999854444444444558899999999999999875432 45654 222 112211 1
Q ss_pred ---------------------eecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 119 ---------------------ITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 119 ---------------------~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
++....+.+++..|-..-|++|+ ++.+.||.+..
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 12345677888888544455555 46789998764
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.55 E-value=18 Score=39.68 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=36.5
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~ 120 (568)
+......+.+++.+|++++.++...-|.|.++|+.++..+++.+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 33445568899999999999998888999999999988877763
No 455
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.72 E-value=1.3e+02 Score=35.09 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=71.4
Q ss_pred ccCCCCEEEEEECCCcEEEEECC-CCceeEEeeCCCCCcEEEEEEccCC--CeEEEEEeCC-CeEEEEECCCC-------
Q 008356 2 YNCKDEHLASISLSGDLILHNLA-SGAKAAELKDPNEQVLRVLDYSRNS--RHLLVTAGDD-GTLHLWDTTGR------- 70 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~-tg~~v~~l~~~h~~~Vs~Lafspdg--~~lLaTgs~D-GtV~VWDl~t~------- 70 (568)
++|+.+.+-.|=....|.-|-+. +.+.+..+.-.....|.|+...... ..+.+.|-.+ +.-++--+...
T Consensus 35 ~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~ 114 (670)
T PF10395_consen 35 FSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDG 114 (670)
T ss_pred cCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccccc
Confidence 46666776666555566656554 7788888877677888888775432 2355555344 33444433222
Q ss_pred ----C-ceeEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 008356 71 ----S-PKVSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPG 111 (568)
Q Consensus 71 ----~-~~v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlr 111 (568)
+ .....+ .-...|-.+.|..+++.+++.-.+|.|.+||..
T Consensus 115 ~~~~e~~~~~~~-kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 115 TVNSETTNEFEL-KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred ccCccccceEEE-EcccceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 0 011122 236779999999999999999999999999993
No 456
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.35 E-value=87 Score=32.91 Aligned_cols=118 Identities=15% Similarity=0.226 Sum_probs=61.6
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRR-PSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~-~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
...-...+..+...+++++++++..-..+.-||--... ..+.......|..|.|.|++.+.+++ ..|.|++=+.....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 33445678888889999988887766666788754322 12222356789999999998776655 88888888722211
Q ss_pred CceEE--EeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEec
Q 008356 156 QPLTV--LRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGA 198 (568)
Q Consensus 156 ~~v~~--l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s 198 (568)
..... .......-.+..++|.+++...+.++ .+.++++..
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg---~G~l~~S~D 260 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG---SGTLLVSTD 260 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES---TT-EEEESS
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC---CccEEEeCC
Confidence 11111 11001223478899999877777662 335555544
No 457
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=79.05 E-value=93 Score=33.03 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=61.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcC--------------------CeE
Q 008356 87 ISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSN--------------------GRV 146 (568)
Q Consensus 87 lafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~D--------------------G~V 146 (568)
..|+ ++++.++-+..|.|..+|..+|+...+....+....++|. |.++++|... .-|
T Consensus 208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv 284 (335)
T TIGR03032 208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGV 284 (335)
T ss_pred CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccE
Confidence 3455 7888888889999999999888877666777888999998 8888877541 225
Q ss_pred EEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356 147 VFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 147 ~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd 178 (568)
.|.|++++ ..+..++..+.-..+..+++-|.
T Consensus 285 ~vidl~tG-~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 285 AVIDLNSG-DVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred EEEECCCC-CEEEEEEeCCceeEEEEEEEecC
Confidence 66677766 34455554444455666666664
No 458
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.93 E-value=74 Score=31.82 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=78.0
Q ss_pred CCC-CEEEEEECCCcEEEEECC--CCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCC---C---eEEEEEC---C--C
Q 008356 4 CKD-EHLASISLSGDLILHNLA--SGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDD---G---TLHLWDT---T--G 69 (568)
Q Consensus 4 pdG-~~LasGs~DG~V~VWDl~--tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~D---G---tV~VWDl---~--t 69 (568)
+.| +.|..+...+.|.+|++. ..+....|. .-+.|..+.++..|+ +++|--++ . .+|+|=- . .
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 345 566565677889999987 344566665 346677899999998 67765332 2 5666632 1 1
Q ss_pred CCceeEEecc---------------------CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce----eeEee---
Q 008356 70 RSPKVSWLKQ---------------------HSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRP----SSCIT--- 120 (568)
Q Consensus 70 ~~~~v~~l~~---------------------H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~----v~~~~--- 120 (568)
..+....+.+ -...+.+++..| .|++++ |+ ++++.+|.+..... +..+.
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~ 179 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFER 179 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechh
Confidence 1111111112 134578888888 666554 33 45688887654322 11111
Q ss_pred ----c--CCCeEEEEEecCCCEEEEEEcCCeEEEEEC
Q 008356 121 ----Y--EAPFSSLAFIDDDWILTAGTSNGRVVFYDI 151 (568)
Q Consensus 121 ----h--~~~ItsLafsPdg~~LasGs~DG~V~VWDl 151 (568)
| .-....+++. +.++|..+. -.++++.+
T Consensus 180 ~l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hhhheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1 1123455554 556666553 45666544
No 459
>PLN02193 nitrile-specifier protein
Probab=78.46 E-value=81 Score=35.00 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCEEEEEECC-----CcEEEEECCCCceeE--EeeC-CCCCcEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCCc
Q 008356 6 DEHLASISLS-----GDLILHNLASGAKAA--ELKD-PNEQVLRVLDYSRNSRHLLVTAGDDG-----TLHLWDTTGRSP 72 (568)
Q Consensus 6 G~~LasGs~D-----G~V~VWDl~tg~~v~--~l~~-~h~~~Vs~Lafspdg~~lLaTgs~DG-----tV~VWDl~t~~~ 72 (568)
+.+.+.|+.+ ..+.+||+.+.+-.. .+.. +....-.++.. -++ ++++.|+.++ .+..||+.+.+
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~~- 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDKK- 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCCE-
Confidence 3444556554 357888887654322 1100 11111122222 233 4777777543 46788876654
Q ss_pred eeEEeccC----C-CCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceeeEeec-----CCCeEEEEEecCCCEEE
Q 008356 73 KVSWLKQH----S-APTAGISFSSDDKIIASVGLD----KKLYTYDPGSRRPSSCITY-----EAPFSSLAFIDDDWILT 138 (568)
Q Consensus 73 ~v~~l~~H----~-~~VtslafsPdg~~LaSgs~D----GtV~IWDlrt~~~v~~~~h-----~~~ItsLafsPdg~~La 138 (568)
...+... . ..-..++. -++++++.++.+ ..|.+||+.+.+-...... .....+++ .-++++++
T Consensus 306 -W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv 382 (470)
T PLN02193 306 -WFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVI 382 (470)
T ss_pred -EEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEE
Confidence 2222110 0 00111222 256777777755 4589999988754333211 11111222 22467777
Q ss_pred EEEcC--------------CeEEEEECCCC
Q 008356 139 AGTSN--------------GRVVFYDIRGK 154 (568)
Q Consensus 139 sGs~D--------------G~V~VWDlrt~ 154 (568)
.|+.+ ..+.+||+.+.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcC
Confidence 77753 24778887765
No 460
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=78.02 E-value=1.1 Score=37.50 Aligned_cols=23 Identities=43% Similarity=0.891 Sum_probs=21.3
Q ss_pred CcccccCCCCCceeeecCCCCCCcCCccccccccccc
Q 008356 251 PQRSYLRPGGPLARLHAPRSSYNFKDDMEVFSPLVDV 287 (568)
Q Consensus 251 P~~~~~~~g~~~~~L~~~r~~~~~~dd~~vfsP~~dv 287 (568)
||++|...+..+..++ |||++||
T Consensus 1 pYm~h~~~~~~v~~~~--------------F~PfEDv 23 (80)
T PF08149_consen 1 PYMTHLKPGSPVESLR--------------FCPFEDV 23 (80)
T ss_pred CCccccCCCCeeeeeE--------------EechHHe
Confidence 7889988999999999 9999998
No 461
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=78.01 E-value=48 Score=34.73 Aligned_cols=12 Identities=0% Similarity=0.116 Sum_probs=8.3
Q ss_pred CcEEEEECCCCc
Q 008356 16 GDLILHNLASGA 27 (568)
Q Consensus 16 G~V~VWDl~tg~ 27 (568)
..|.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 457888877654
No 462
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.80 E-value=99 Score=32.69 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=82.3
Q ss_pred EEEEEECCCcEEEEECCCCce-----eEEeeCC-CCCcEEEEEEccC--CCeEEEEEeCCCeEEEEECCCCCceeE----
Q 008356 8 HLASISLSGDLILHNLASGAK-----AAELKDP-NEQVLRVLDYSRN--SRHLLVTAGDDGTLHLWDTTGRSPKVS---- 75 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~-----v~~l~~~-h~~~Vs~Lafspd--g~~lLaTgs~DGtV~VWDl~t~~~~v~---- 75 (568)
.++.+++||+|.-|...-+.. ...+... ...+-..+++... +..+.++=-.+++|.|||-.-....+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 467789999999998642222 1223221 1333445666543 454445555789999998643321000
Q ss_pred --EeccCCCC-----------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCC---CeEEEEEec------C
Q 008356 76 --WLKQHSAP-----------TAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEA---PFSSLAFID------D 133 (568)
Q Consensus 76 --~l~~H~~~-----------VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~---~ItsLafsP------d 133 (568)
.+...-.+ |+-..-.++.+.=+.+-.-|.|-+||+. ++.++.+...+ ..+.|+..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00000011 1111122222223334455789999976 56666665443 356777766 3
Q ss_pred CCEEEEEEcCCeEEEEECCCCC
Q 008356 134 DWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 134 g~~LasGs~DG~V~VWDlrt~~ 155 (568)
+.+|+--..||+|..||..+..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCeEEeecCCceeEEecCCCCc
Confidence 6677766679999999998764
No 463
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=77.68 E-value=45 Score=34.65 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCCEEEEEEC-----CCcEEEEECCCCcee--EEeeCCCCCcEEEEEEccCCCeEEEEEeCCC----eEEEEECCCCC
Q 008356 5 KDEHLASISL-----SGDLILHNLASGAKA--AELKDPNEQVLRVLDYSRNSRHLLVTAGDDG----TLHLWDTTGRS 71 (568)
Q Consensus 5 dG~~LasGs~-----DG~V~VWDl~tg~~v--~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DG----tV~VWDl~t~~ 71 (568)
++++.+.|+. ...+.+||+.+.+-. ..+.. ...........++ ++++.|+.++ .+.+||..+..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG--EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC--CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCe
Confidence 3445556654 235888888755422 21211 1111112222334 4778887664 35688887655
No 464
>PLN02193 nitrile-specifier protein
Probab=77.47 E-value=1.1e+02 Score=33.91 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=53.5
Q ss_pred CeEEEEEeCC-----CeEEEEECCCCCceeEEeccC---C--CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCc
Q 008356 50 RHLLVTAGDD-----GTLHLWDTTGRSPKVSWLKQH---S--APTAGISFSSDDKIIASVGLDK-----KLYTYDPGSRR 114 (568)
Q Consensus 50 ~~lLaTgs~D-----GtV~VWDl~t~~~~v~~l~~H---~--~~VtslafsPdg~~LaSgs~DG-----tV~IWDlrt~~ 114 (568)
..+++.|+.+ ..+.+||+.+.+ ...+... . ..-.+++. -++++++.|+.++ .+..||+.+.+
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 3477777765 358888987654 2222211 1 11112222 2566677777543 47788887765
Q ss_pred eeeEee------cCCCeEEEEEecCCCEEEEEEcC----CeEEEEECCCC
Q 008356 115 PSSCIT------YEAPFSSLAFIDDDWILTAGTSN----GRVVFYDIRGK 154 (568)
Q Consensus 115 ~v~~~~------h~~~ItsLafsPdg~~LasGs~D----G~V~VWDlrt~ 154 (568)
-...-. ..... .++. -++++++.++.+ ..|.+||+.+.
T Consensus 306 W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 306 WFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCC
Confidence 322111 01111 1222 256777777765 45899999875
No 465
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.46 E-value=1.8e+02 Score=35.35 Aligned_cols=102 Identities=12% Similarity=0.025 Sum_probs=61.5
Q ss_pred EEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCC--C-C---EEEEEeCCCeEEEEEC-CCCceeeEe--ec-
Q 008356 52 LLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSD--D-K---IIASVGLDKKLYTYDP-GSRRPSSCI--TY- 121 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPd--g-~---~LaSgs~DGtV~IWDl-rt~~~v~~~--~h- 121 (568)
.++.++.++.+...++.........-+.....|.|++++|- + + +++.|..+..+.+.-. .....+... ..
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~ 580 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE 580 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence 46666677777777775554222333345678999999972 2 3 6777877776554332 222222211 11
Q ss_pred --CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 122 --EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 122 --~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
...|--..+--|..+|+++..||.+..|-++.
T Consensus 581 ~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 581 IIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred ccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 22344445555688999999999988776653
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.40 E-value=37 Score=38.12 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEE---------CCCCceeeE---eec---------CCCeEEEEEecCC---CEEE
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYD---------PGSRRPSSC---ITY---------EAPFSSLAFIDDD---WILT 138 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWD---------lrt~~~v~~---~~h---------~~~ItsLafsPdg---~~La 138 (568)
.|..+..++.|..++-.|.+|.+.++= ++.++.+.. +.. .-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 367788889999999999999655432 133433221 111 1235678999974 6788
Q ss_pred EEEcCCeEEEEECCCCC
Q 008356 139 AGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~~ 155 (568)
.-..|..|++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999998753
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.23 E-value=11 Score=42.34 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=43.7
Q ss_pred EEEEEeCCCeEEEEECCC---CCceeEE-----------ec-----------cCCCCeEEEEEcC----CCCEEEEEeCC
Q 008356 52 LLVTAGDDGTLHLWDTTG---RSPKVSW-----------LK-----------QHSAPTAGISFSS----DDKIIASVGLD 102 (568)
Q Consensus 52 lLaTgs~DGtV~VWDl~t---~~~~v~~-----------l~-----------~H~~~VtslafsP----dg~~LaSgs~D 102 (568)
.++.+..||.+...+... ....... +. .....+..+++.. +..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677888999888887754 1111110 00 0123456666666 77899999999
Q ss_pred CeEEEEECCCCceeeEee
Q 008356 103 KKLYTYDPGSRRPSSCIT 120 (568)
Q Consensus 103 GtV~IWDlrt~~~v~~~~ 120 (568)
++||+||+.+++++....
T Consensus 240 ~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 240 HTLRIWSLETGQCLATID 257 (547)
T ss_dssp SEEEEEETTTTCEEEEEE
T ss_pred CeEEEEECCCCeEEEEec
Confidence 999999999999977664
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.97 E-value=46 Score=34.57 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=66.0
Q ss_pred CcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEe------CCCeEEEEECCCCCceeEEecc-----CCCCe
Q 008356 16 GDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAG------DDGTLHLWDTTGRSPKVSWLKQ-----HSAPT 84 (568)
Q Consensus 16 G~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs------~DGtV~VWDl~t~~~~v~~l~~-----H~~~V 84 (568)
..|++||..+.+-. .+-..-.+.|++|.|..+.+ +++.|. ....+..||..+.. ...+.. -.++|
T Consensus 16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcE
Confidence 46999998655533 23323567899999985544 777764 45678999998765 333443 24788
Q ss_pred EEEEEcC-CCCEEE-EEe-C--CCeEEEEECCCCceeeE--eecCCCeEEEEEe
Q 008356 85 AGISFSS-DDKIIA-SVG-L--DKKLYTYDPGSRRPSSC--ITYEAPFSSLAFI 131 (568)
Q Consensus 85 tslafsP-dg~~La-Sgs-~--DGtV~IWDlrt~~~v~~--~~h~~~ItsLafs 131 (568)
..+.+.. |...+. .|. . +..|..||=.+-..+.. +.....|..+.+-
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 8888865 444444 333 2 33577776544333322 2223445555443
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=73.33 E-value=14 Score=40.69 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=87.8
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCcee-EEeeCC-CCCc---EE-EEEEccCCCeEEEEEeCCCeEEEE-ECCC-CCce
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKA-AELKDP-NEQV---LR-VLDYSRNSRHLLVTAGDDGTLHLW-DTTG-RSPK 73 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v-~~l~~~-h~~~---Vs-~Lafspdg~~lLaTgs~DGtV~VW-Dl~t-~~~~ 73 (568)
..|||+.|++-.. ..+.|+++.+.... +++... ..+. |. .+.... |..-+..+..||-|.-| |++. ..+.
T Consensus 228 L~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdvr~~~~p~ 305 (733)
T COG4590 228 LTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDVRRDGQPH 305 (733)
T ss_pred ECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeeeecCCCCc
Confidence 3689998877654 67888887654321 111111 1111 11 111111 22357778888888776 5532 2222
Q ss_pred e---EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEE
Q 008356 74 V---SWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYD 150 (568)
Q Consensus 74 v---~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWD 150 (568)
. +.++-...++..+.-..+.+-+++-...|++.++.....+.+........+..++++|++.+|++-. .|.++++.
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~ 384 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQ 384 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-CCceEEEE
Confidence 2 2222222334433323355667777888888887766555544434455788899999999988754 47899999
Q ss_pred CCCCC
Q 008356 151 IRGKP 155 (568)
Q Consensus 151 lrt~~ 155 (568)
+++..
T Consensus 385 l~Nr~ 389 (733)
T COG4590 385 LENRN 389 (733)
T ss_pred ecCCC
Confidence 98764
No 470
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=72.27 E-value=18 Score=25.27 Aligned_cols=40 Identities=10% Similarity=0.035 Sum_probs=27.8
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceeeEeecCCCeEEEEE
Q 008356 91 SDDKIIASVG-LDKKLYTYDPGSRRPSSCITYEAPFSSLAF 130 (568)
Q Consensus 91 Pdg~~LaSgs-~DGtV~IWDlrt~~~v~~~~h~~~ItsLaf 130 (568)
|++++|+++. .++.|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4566665544 688999999998888777755544555554
No 471
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=72.09 E-value=1.4e+02 Score=31.69 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=79.4
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC--CCCeE
Q 008356 8 HLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH--SAPTA 85 (568)
Q Consensus 8 ~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H--~~~Vt 85 (568)
.|+.++.+|.++.+|..+|+.+..........+..-..-.++ .++.++.++.+...|..++......-..- ...+.
T Consensus 113 ~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~ 190 (370)
T COG1520 113 KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY 190 (370)
T ss_pred eEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccc
Confidence 477888899999999889998877775330111112222233 34555577888888887776322211110 11111
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeEeecCCCeEEE------EEec----CCCEEEEEEcCCeEEEEECCC
Q 008356 86 GISFSSDDKIIASVGL--DKKLYTYDPGSRRPSSCITYEAPFSSL------AFID----DDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 86 slafsPdg~~LaSgs~--DGtV~IWDlrt~~~v~~~~h~~~ItsL------afsP----dg~~LasGs~DG~V~VWDlrt 153 (568)
.--. .....++.+.. ++.+.-.|.+++...........+..- .+.. .+..++.+..++.+...|..+
T Consensus 191 ~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~ 269 (370)
T COG1520 191 GSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT 269 (370)
T ss_pred cCce-eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence 1001 12334444444 667888888888877664322221111 1110 123345677778888888887
Q ss_pred CCC
Q 008356 154 KPQ 156 (568)
Q Consensus 154 ~~~ 156 (568)
...
T Consensus 270 G~~ 272 (370)
T COG1520 270 GEL 272 (370)
T ss_pred Cce
Confidence 753
No 472
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.83 E-value=26 Score=40.93 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=67.0
Q ss_pred CCEEEEEECCCcEEEEECCC-------C----ce-------eEEeeCCCCCcEEEEEEc--cCCCeEEEEEeCCCeEEEE
Q 008356 6 DEHLASISLSGDLILHNLAS-------G----AK-------AAELKDPNEQVLRVLDYS--RNSRHLLVTAGDDGTLHLW 65 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~t-------g----~~-------v~~l~~~h~~~Vs~Lafs--pdg~~lLaTgs~DGtV~VW 65 (568)
.+.|+.+.+||.|.+|.+++ . +. ..-+.......+..+++. ...+ +||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEE
Confidence 46788899999999997531 1 00 011222234567788887 5554 77777777777777
Q ss_pred ECCC--CCceeEEeccCCCCeEEEEEcCCC---C---EEEEEeCCCeEEEEEC
Q 008356 66 DTTG--RSPKVSWLKQHSAPTAGISFSSDD---K---IIASVGLDKKLYTYDP 110 (568)
Q Consensus 66 Dl~t--~~~~v~~l~~H~~~VtslafsPdg---~---~LaSgs~DGtV~IWDl 110 (568)
-... .+........|..-|-+|.|.++. . ++++++-.|.|.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6533 221111122366778999998732 2 7888899999999887
No 473
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=71.82 E-value=22 Score=38.98 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=46.3
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCC-----------------CeEEEEEeCCCeEEE
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNS-----------------RHLLVTAGDDGTLHL 64 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg-----------------~~lLaTgs~DGtV~V 64 (568)
.+|++++.|+...=|.|.|+|+.++..++..++..+..+.-+.....+ ..+++-+-.-|.|.|
T Consensus 315 ~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~lEv 394 (415)
T PF14655_consen 315 LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGILEV 394 (415)
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCeEEE
Confidence 478888888887779999999999988877776433332222221111 113344567788888
Q ss_pred EECCCCC
Q 008356 65 WDTTGRS 71 (568)
Q Consensus 65 WDl~t~~ 71 (568)
|+++.+.
T Consensus 395 W~~~~g~ 401 (415)
T PF14655_consen 395 WSMRQGP 401 (415)
T ss_pred EecCCCC
Confidence 8887765
No 474
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=71.82 E-value=86 Score=34.03 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.5
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 123 APFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 123 ~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
..|..++..+..+.|++...+|.|.+||+..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999985
No 475
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.51 E-value=1.4e+02 Score=32.00 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=8.4
Q ss_pred eEEEEECCCCC
Q 008356 61 TLHLWDTTGRS 71 (568)
Q Consensus 61 tV~VWDl~t~~ 71 (568)
.|.+||..++.
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 58889987665
No 476
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.46 E-value=1.6e+02 Score=32.14 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEeec--CCCeEEEEEecCCCEEEEEEcCCeEEEEECCC
Q 008356 81 SAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCITY--EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRG 153 (568)
Q Consensus 81 ~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~h--~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt 153 (568)
.+++..|+++|++++|+.-..+|.+.+....-.+....+.. ......+.|.-+...++.- +..|.++....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~ 288 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG 288 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC
Confidence 45799999999999999999999999988766666555543 4677889998664433332 44566665443
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=70.11 E-value=36 Score=40.02 Aligned_cols=92 Identities=10% Similarity=0.104 Sum_probs=55.7
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEEC---CCCceeeEeecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCC
Q 008356 85 AGISFSSDDKIIASVGLDK-----KLYTYDP---GSRRPSSCITYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQ 156 (568)
Q Consensus 85 tslafsPdg~~LaSgs~DG-----tV~IWDl---rt~~~v~~~~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~ 156 (568)
..+.|-|+|..+++-+.|| .|..+.- +.|+.-...+.......++|+-....++++. .+.|.+|-..+..-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyhW 328 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYHW 328 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceEE
Confidence 3478999999999988666 3555542 2233322334455566777876655555543 46799998776532
Q ss_pred ceEEEeecCCCCCeeEEEEccCCC
Q 008356 157 PLTVLRACSSSEAVSSLCWQRAKP 180 (568)
Q Consensus 157 ~v~~l~~~~h~~~VtsLafspdg~ 180 (568)
.++.- -.-..+.-+.|+|...
T Consensus 329 YLK~e---~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 YLKVE---RQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEe---ecCCCcceeeeccccC
Confidence 22221 1223466789999643
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=68.26 E-value=23 Score=24.67 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=24.8
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCceeEEeeC
Q 008356 4 CKDEHLASIS-LSGDLILHNLASGAKAAELKD 34 (568)
Q Consensus 4 pdG~~LasGs-~DG~V~VWDl~tg~~v~~l~~ 34 (568)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788777766 478999999988888877765
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=68.20 E-value=2e+02 Score=32.03 Aligned_cols=111 Identities=20% Similarity=0.137 Sum_probs=54.4
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeeCCC--CCcEEEEEEccCCCeEEEEEe--------------CCCeEEEEE
Q 008356 3 NCKDEHLASISLSGDLILHNLASGAKAAELKDPN--EQVLRVLDYSRNSRHLLVTAG--------------DDGTLHLWD 66 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~tg~~v~~l~~~h--~~~Vs~Lafspdg~~lLaTgs--------------~DGtV~VWD 66 (568)
.++|.+++... ..++.+|+ .|+.+..+.... ...-+++...|+|. +|+.+. .|. |..+|
T Consensus 156 l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn-~L~l~~~~~~~~~~~~~~~~~D~-Ivevd 230 (477)
T PF05935_consen 156 LPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGN-LLILASETKYVDEDKDVDTVEDV-IVEVD 230 (477)
T ss_dssp -TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-E-EEEE-
T ss_pred cCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCC-EEEEEeecccccCCCCccEecCE-EEEEC
Confidence 35677665444 78888897 577666554322 12234567788887 565555 222 33333
Q ss_pred CCCCCceeEE--eccC-----------------------C--CCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeE
Q 008356 67 TTGRSPKVSW--LKQH-----------------------S--APTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSC 118 (568)
Q Consensus 67 l~t~~~~v~~--l~~H-----------------------~--~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~ 118 (568)
.+++. +.. +..| . --++++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus 231 -~tG~v-v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 231 -PTGEV-VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp -TTS-E-EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred -CCCCE-EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 22221 110 0000 0 1379999999 666666665566899999888888777
Q ss_pred ee
Q 008356 119 IT 120 (568)
Q Consensus 119 ~~ 120 (568)
++
T Consensus 309 lg 310 (477)
T PF05935_consen 309 LG 310 (477)
T ss_dssp ES
T ss_pred eC
Confidence 63
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=67.95 E-value=0.91 Score=49.88 Aligned_cols=160 Identities=11% Similarity=0.144 Sum_probs=103.9
Q ss_pred EEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceee-Eee
Q 008356 43 LDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKII-ASVGLDKKLYTYDPGSRRPSS-CIT 120 (568)
Q Consensus 43 Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~L-aSgs~DGtV~IWDlrt~~~v~-~~~ 120 (568)
..|-+++.+ ++.++.+..|..||-.+.. .. --..++..-+++|..++..+ +.+-..+.+.+||+.+..... ..+
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq~--~l-e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQV--IL-ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhcce--ec-ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 578888875 7777888899999965543 11 12234556678888866654 455678899999997643221 122
Q ss_pred cCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCC
Q 008356 121 YEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVG 200 (568)
Q Consensus 121 h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~D 200 (568)
....-.-+.|++....++.|...|.+.||+......... .-.|...+++++|.+.+..+... .+..+-+++-..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv---~Gkh~RRgtq~av~lEd~vil~d---cd~~L~v~~qeg 189 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV---MGKHQRRGTQIAVTLEDYVILCD---CDNTLSVTTQEG 189 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhh---hcccccceeEEEecccceeeecC---cHHHHHHhhhcc
Confidence 222222378898888999999999999999988643222 11388999999999976655433 122222333335
Q ss_pred CcEEcCCCCCCC
Q 008356 201 DSILMPDPLPSV 212 (568)
Q Consensus 201 g~V~VWDlr~~~ 212 (568)
..+.++.++-+.
T Consensus 190 eta~ltevggep 201 (615)
T KOG2247|consen 190 ETASLTEVGGEP 201 (615)
T ss_pred ceeeeeeccCcc
Confidence 566666665444
No 481
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=67.67 E-value=1.1e+02 Score=32.86 Aligned_cols=11 Identities=0% Similarity=0.175 Sum_probs=7.9
Q ss_pred cEEEEECCCCc
Q 008356 17 DLILHNLASGA 27 (568)
Q Consensus 17 ~V~VWDl~tg~ 27 (568)
.|.+||..+.+
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 47888876654
No 482
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=67.65 E-value=2e+02 Score=31.72 Aligned_cols=108 Identities=11% Similarity=0.166 Sum_probs=64.7
Q ss_pred cCCCeEEEEEeCCCeEEEEECCCCCce---eEEeccCCCCeEEEEEcC----CCCEEEEEeCCCeEEEEECCC--Cc---
Q 008356 47 RNSRHLLVTAGDDGTLHLWDTTGRSPK---VSWLKQHSAPTAGISFSS----DDKIIASVGLDKKLYTYDPGS--RR--- 114 (568)
Q Consensus 47 pdg~~lLaTgs~DGtV~VWDl~t~~~~---v~~l~~H~~~VtslafsP----dg~~LaSgs~DGtV~IWDlrt--~~--- 114 (568)
+++...|++|+..|.++||+....... +.....-..+|-.++.-. .....+..=.-+++.+|.+.. +.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 344457999999999999998544311 222334457788777542 233344446677888888732 11
Q ss_pred --ee---eEeec--CCCeEEEEEec----C-CCEEEEEEcCCeEEEEECCCC
Q 008356 115 --PS---SCITY--EAPFSSLAFID----D-DWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 115 --~v---~~~~h--~~~ItsLafsP----d-g~~LasGs~DG~V~VWDlrt~ 154 (568)
.. ..+.| ......+++-| . -.+|++-+-||.+.+|+-+..
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 11 11122 22333344433 2 357888889999999997654
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.64 E-value=1e+02 Score=34.38 Aligned_cols=135 Identities=16% Similarity=0.055 Sum_probs=66.1
Q ss_pred CCCcEEEEECCCCceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccCC-CCeEEEEEcCC
Q 008356 14 LSGDLILHNLASGAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQHS-APTAGISFSSD 92 (568)
Q Consensus 14 ~DG~V~VWDl~tg~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H~-~~VtslafsPd 92 (568)
..+.+.++|. +|..+..+....... ..+...++|. +++... ..++.+|+.+.......+.... ..=..+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~-~~~~~l~nG~-ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSD-NSFKQLPNGN-LLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT---SSEEE-TTS--EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCcccc-ceeeEcCCCC-EEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCC
Confidence 3456777774 566555544311111 1156778886 444333 7888888876642222222211 11245677789
Q ss_pred CCEEEEEeC-------------CCeEEEEECCCCceeeEee---c----C---------------------CCeEEEEEe
Q 008356 93 DKIIASVGL-------------DKKLYTYDPGSRRPSSCIT---Y----E---------------------APFSSLAFI 131 (568)
Q Consensus 93 g~~LaSgs~-------------DGtV~IWDlrt~~~v~~~~---h----~---------------------~~ItsLafs 131 (568)
|++|+.+.. ...|..+| .+|+.+..+. | . --++++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 998887772 11356666 6666655431 1 0 127899999
Q ss_pred c-CCCEEEEEEcCCeEEEEECCCC
Q 008356 132 D-DDWILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 132 P-dg~~LasGs~DG~V~VWDlrt~ 154 (568)
+ ++.+|+++-....|...|.++.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS
T ss_pred CCCCeEEEEcCcceEEEEEECCCC
Confidence 9 5555665655668888997766
No 484
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.46 E-value=1.4e+02 Score=31.07 Aligned_cols=114 Identities=23% Similarity=0.241 Sum_probs=65.3
Q ss_pred CCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEECCCCceeeEee-----cCCCeEE
Q 008356 59 DGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASVG------LDKKLYTYDPGSRRPSSCIT-----YEAPFSS 127 (568)
Q Consensus 59 DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSgs------~DGtV~IWDlrt~~~v~~~~-----h~~~Its 127 (568)
...|++||..+.+- ...-.+-.+.|+++.|..+.++++.|. ....+..||..+..-...-. ..+++..
T Consensus 15 C~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 45699999877651 111123456799999986666666664 34578899998765432222 2467888
Q ss_pred EEEec-C-CCEEEEEE-cCCe--EEEEECCCCCCceEEEee--cCCCCCeeEEEEcc
Q 008356 128 LAFID-D-DWILTAGT-SNGR--VVFYDIRGKPQPLTVLRA--CSSSEAVSSLCWQR 177 (568)
Q Consensus 128 LafsP-d-g~~LasGs-~DG~--V~VWDlrt~~~~v~~l~~--~~h~~~VtsLafsp 177 (568)
+.+.. | .++.+.|. .++. |..||=..- ..+.. ......|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W----~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSW----SSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCce----EeccccccCCCCEEEEEEEEe
Confidence 87754 3 34555554 3444 555653322 22211 22345677776655
No 485
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=66.55 E-value=1.9e+02 Score=33.84 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=76.2
Q ss_pred ccCCCCEEEEEECCCcEEEEECCCCc--eeEEeeCCCCC-cEEEEEEc-----cCCCeEEEEEeC-CC---eEEEEECCC
Q 008356 2 YNCKDEHLASISLSGDLILHNLASGA--KAAELKDPNEQ-VLRVLDYS-----RNSRHLLVTAGD-DG---TLHLWDTTG 69 (568)
Q Consensus 2 fSpdG~~LasGs~DG~V~VWDl~tg~--~v~~l~~~h~~-~Vs~Lafs-----pdg~~lLaTgs~-DG---tV~VWDl~t 69 (568)
|..+++.+++...+|.|.+||...+. .+..+...+.. .+.. +|- .++..++++.+. ++ ..+++.+..
T Consensus 137 ~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~ 215 (670)
T PF10395_consen 137 FSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSN 215 (670)
T ss_pred EecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEEEEEEEecc
Confidence 45678899999999999999983322 22233322221 2221 221 123335555444 32 467777722
Q ss_pred CCceeEEec---cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeEeecC-------CCeEEEEEecCCCEEE
Q 008356 70 RSPKVSWLK---QHSAPTAGISFSS-DDKIIASVGLDKKLYTYDPGSRRPSSCITYE-------APFSSLAFIDDDWILT 138 (568)
Q Consensus 70 ~~~~v~~l~---~H~~~VtslafsP-dg~~LaSgs~DGtV~IWDlrt~~~v~~~~h~-------~~ItsLafsPdg~~La 138 (568)
....+..+. .+........|+- +|.+..- .+++|.+|++...+....+... ..+.++.--...+.|+
T Consensus 216 ~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLL 293 (670)
T PF10395_consen 216 ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLL 293 (670)
T ss_pred CCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEE
Confidence 211122222 1222223333333 4544333 6789999999887766665322 1232332222334444
Q ss_pred EEEcCCeEEEEECCCC
Q 008356 139 AGTSNGRVVFYDIRGK 154 (568)
Q Consensus 139 sGs~DG~V~VWDlrt~ 154 (568)
+. ++.|++.|+.-.
T Consensus 294 s~--~nkIyLld~~~~ 307 (670)
T PF10395_consen 294 SV--NNKIYLLDLKFE 307 (670)
T ss_pred Ec--CCEEEEEeehhh
Confidence 33 578999998754
No 486
>PRK05560 DNA gyrase subunit A; Validated
Probab=66.49 E-value=2.9e+02 Score=33.16 Aligned_cols=202 Identities=10% Similarity=0.038 Sum_probs=102.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCCc-------eeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEEC---CCCC--
Q 008356 4 CKDEHLASISLSGDLILHNLASGA-------KAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDT---TGRS-- 71 (568)
Q Consensus 4 pdG~~LasGs~DG~V~VWDl~tg~-------~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl---~t~~-- 71 (568)
++...+++.+.+|.|+-..+..-. -...++-...+.+..+..+.... .|+..+..|.++.... ....
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d-~LllfTs~Grv~~l~v~~iP~~~~~ 574 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHD-TLLFFTNRGRVYRLKVYEIPEASRT 574 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCC-eEEEEecCCeEEEEEhhhCcCCCcC
Confidence 345677888899998887654321 11111111233444344444444 3555566777666544 2211
Q ss_pred ---cee---EEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-------ceeeEeecCCCeEEEEEecCCCE
Q 008356 72 ---PKV---SWLKQHSAPTAGISFSS--DDKIIASVGLDKKLYTYDPGSR-------RPSSCITYEAPFSSLAFIDDDWI 136 (568)
Q Consensus 72 ---~~v---~~l~~H~~~VtslafsP--dg~~LaSgs~DGtV~IWDlrt~-------~~v~~~~h~~~ItsLafsPdg~~ 136 (568)
..+ ..+.....-|.++.+.. +...++..+.+|.++-.++..- .....+...+.+..+........
T Consensus 575 ~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~ 654 (805)
T PRK05560 575 ARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDD 654 (805)
T ss_pred CCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCE
Confidence 001 11233333455555553 6678999999999887765432 11222233444544444455567
Q ss_pred EEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCCCC
Q 008356 137 LTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFIDETTCKAETALLGGAVGDSILMPDPLPSV 212 (568)
Q Consensus 137 LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~~~ 212 (568)
|+..+..|.+..+....-.. .. .....+..+.+.++.+.+....-..+...++..+..|.++...+..+.
T Consensus 655 lll~T~~Gr~~r~~~~eIp~----~g--r~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~ 724 (805)
T PRK05560 655 ILLATKNGKAIRFPESDVRP----MG--RTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYR 724 (805)
T ss_pred EEEEECCCcEEEEEhhhcCc----cC--cccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhh
Confidence 88888888887776653211 00 011223334444433332221111122245555557887777665544
No 487
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.19 E-value=91 Score=32.89 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eeEe-----ecCCCeEEEEEecC
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRP---SSCI-----TYEAPFSSLAFIDD 133 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~---v~~~-----~h~~~ItsLafsPd 133 (568)
..+.|+|.|+++++++ ...|.|++++ ..+.. +..+ ........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 3578999999877664 6699999999 44433 2222 23456889999994
No 488
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.19 E-value=86 Score=33.09 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCC-ceeEEe----ccCCCCeEEEEEcCC---CCEEE-EEeCC--------
Q 008356 40 LRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRS-PKVSWL----KQHSAPTAGISFSSD---DKIIA-SVGLD-------- 102 (568)
Q Consensus 40 Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~-~~v~~l----~~H~~~VtslafsPd---g~~La-Sgs~D-------- 102 (568)
-+.|+|.|+++ +| ++...|.|++++.+... ..+..+ .........++++|+ ..+|. +-...
T Consensus 4 P~~~a~~pdG~-l~-v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGR-LL-VAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSC-EE-EEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCc-EE-EEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35799999987 44 45779999999943332 122222 234456899999993 23333 33321
Q ss_pred CeEEEEECCCC-------cee-eEee----cCCCeEEEEEecCCCEEEEEEc
Q 008356 103 KKLYTYDPGSR-------RPS-SCIT----YEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 103 GtV~IWDlrt~-------~~v-~~~~----h~~~ItsLafsPdg~~LasGs~ 142 (568)
..|.-|.+..+ +.+ .... .......|+|.|||.+.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 13444444332 111 1112 2345678999999966655443
No 489
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=65.06 E-value=21 Score=39.30 Aligned_cols=143 Identities=13% Similarity=0.046 Sum_probs=81.8
Q ss_pred CCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeEEeccC-CC----CeE-EEEEcCCCCEEEEEeCCCeEEEE-E
Q 008356 37 EQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVSWLKQH-SA----PTA-GISFSSDDKIIASVGLDKKLYTY-D 109 (568)
Q Consensus 37 ~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~~l~~H-~~----~Vt-slafsPdg~~LaSgs~DGtV~IW-D 109 (568)
...+..+-..|+++ .++.-.. ..+.++++.......+.+... .+ .|+ .+.....+.-++.++.||.|.-| |
T Consensus 220 ~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 220 FSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred ccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 34566677899998 4544433 778899987665333322221 11 122 12223356778899999988866 6
Q ss_pred CCCC-ce----eeEeec-CCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccCCCeEE
Q 008356 110 PGSR-RP----SSCITY-EAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRAKPVFI 183 (568)
Q Consensus 110 lrt~-~~----v~~~~h-~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspdg~~La 183 (568)
.+.+ .+ ++.+.. ..++..+.-..+.+-++.-..+|++.++.....+ ++-.-. --..+.-++++|++.+++
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~-~lL~~~---~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK-LLLFER---AYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc-ceehhh---hhcCcceeeeCcccchhe
Confidence 6543 21 222222 2334433333345667777888888888765542 221111 123566788999988877
Q ss_pred Ee
Q 008356 184 DE 185 (568)
Q Consensus 184 s~ 185 (568)
..
T Consensus 374 ~e 375 (733)
T COG4590 374 SE 375 (733)
T ss_pred ee
Confidence 76
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=62.70 E-value=2.6e+02 Score=31.24 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=57.1
Q ss_pred cEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCce-eEEe----c-cCCCCeEEEEEcCCC------CEEEEEe------
Q 008356 39 VLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPK-VSWL----K-QHSAPTAGISFSSDD------KIIASVG------ 100 (568)
Q Consensus 39 ~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~-v~~l----~-~H~~~VtslafsPdg------~~LaSgs------ 100 (568)
.-..|+|.|+++ +|++--..|.|++++..+.... +..+ . ........|+++|+- .+|+...
T Consensus 31 ~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 31 KPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 346799999986 6665444699999986543311 1111 1 125668999999864 2343332
Q ss_pred ----CCCeEEEEECCCC--c---eeeEee-----cCCCeEEEEEecCCCEEEEEEc
Q 008356 101 ----LDKKLYTYDPGSR--R---PSSCIT-----YEAPFSSLAFIDDDWILTAGTS 142 (568)
Q Consensus 101 ----~DGtV~IWDlrt~--~---~v~~~~-----h~~~ItsLafsPdg~~LasGs~ 142 (568)
....|.-|.+... . ...++. ....-..|+|.|||.++++.+.
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 1234555554321 1 111221 1223457889999986665443
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=62.41 E-value=35 Score=38.41 Aligned_cols=68 Identities=24% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCCEEEEEECCCcEEEEECCC----CceeEEe-eCC--------------------CCCcEEEEEEcc---CCCeEEEEE
Q 008356 5 KDEHLASISLSGDLILHNLAS----GAKAAEL-KDP--------------------NEQVLRVLDYSR---NSRHLLVTA 56 (568)
Q Consensus 5 dG~~LasGs~DG~V~VWDl~t----g~~v~~l-~~~--------------------h~~~Vs~Lafsp---dg~~lLaTg 56 (568)
+...|+++..||.+....... +...... ... .......+++.. +++.++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566788888999888877653 2222111 110 123344555555 234489999
Q ss_pred eCCCeEEEEECCCCCc
Q 008356 57 GDDGTLHLWDTTGRSP 72 (568)
Q Consensus 57 s~DGtV~VWDl~t~~~ 72 (568)
+.|+++|+||+.++.+
T Consensus 237 ~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQC 252 (547)
T ss_dssp ETTSEEEEEETTTTCE
T ss_pred eCCCeEEEEECCCCeE
Confidence 9999999999998875
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=61.37 E-value=2.7e+02 Score=31.07 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=39.2
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeE--e------ecCCCeEEEEEecCC
Q 008356 77 LKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSC--I------TYEAPFSSLAFIDDD 134 (568)
Q Consensus 77 l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~--~------~h~~~ItsLafsPdg 134 (568)
+...-...+.|+|.|++++|++--..|.|++++..++..... + ...+....|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333445678999999998777655579999998665432111 1 135668899999874
No 493
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=60.70 E-value=49 Score=31.42 Aligned_cols=32 Identities=31% Similarity=0.434 Sum_probs=25.7
Q ss_pred CCeEEEEEecCC------CEEEEEEcCCeEEEEECCCC
Q 008356 123 APFSSLAFIDDD------WILTAGTSNGRVVFYDIRGK 154 (568)
Q Consensus 123 ~~ItsLafsPdg------~~LasGs~DG~V~VWDlrt~ 154 (568)
..+..++|+|.| -+|++-+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999943 46778889999999987653
No 494
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.84 E-value=41 Score=23.28 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCeEEEEEeCC--CeEEEE
Q 008356 38 QVLRVLDYSRNSRHLLVTAGDD--GTLHLW 65 (568)
Q Consensus 38 ~~Vs~Lafspdg~~lLaTgs~D--GtV~VW 65 (568)
..-....|+|||+.+++++..+ |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456689999999888888888 777776
No 495
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=57.38 E-value=2.4e+02 Score=29.29 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=41.7
Q ss_pred cCCCCEEEEEECCCcEEEEECCC--CceeEEeeCCCCCcEEEEEEccCCCeEEEEEeCCCeEEEEECC
Q 008356 3 NCKDEHLASISLSGDLILHNLAS--GAKAAELKDPNEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTT 68 (568)
Q Consensus 3 SpdG~~LasGs~DG~V~VWDl~t--g~~v~~l~~~h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~ 68 (568)
..++++|+.|.++|. ++.++.. .+..+.+ +...|+++...+..+-+++.++....+++|++.
T Consensus 10 ~~~~~~lL~GTe~Gl-y~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 10 TCDGKWLLVGTEEGL-YVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred ccCCcEEEEEeCCce-EEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 345568999999984 4555543 2333333 456788899988877555566666679999983
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.10 E-value=70 Score=39.60 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=77.7
Q ss_pred eCCCeEEEEECCCCCceeEEeccCCCCeEEEEE--------cCCCCEEEEEeCCCeEEEEECC----CCcee-----eEe
Q 008356 57 GDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISF--------SSDDKIIASVGLDKKLYTYDPG----SRRPS-----SCI 119 (568)
Q Consensus 57 s~DGtV~VWDl~t~~~~v~~l~~H~~~Vtslaf--------sPdg~~LaSgs~DGtV~IWDlr----t~~~v-----~~~ 119 (568)
+-|+.+.+|+.++... ...+.+-...|..|.. .|.=++++....--.|.++-+. ++..- ..+
T Consensus 96 TiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 5688899999977442 4455555555555543 3333455555555556665442 21111 111
Q ss_pred -ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECC----CC---CCc--------------eEEEeec-CCCCCeeEEEEc
Q 008356 120 -TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIR----GK---PQP--------------LTVLRAC-SSSEAVSSLCWQ 176 (568)
Q Consensus 120 -~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlr----t~---~~~--------------v~~l~~~-~h~~~VtsLafs 176 (568)
...-.|+|+....+|+++++|-.+ .||.+. .+ .++ ..++... .+..+|..+..+
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 235568899988888888776554 444442 10 000 0111212 355677777766
Q ss_pred cCCCeEEEeccCCCCeEEEEecCCCcEEcCCCCC
Q 008356 177 RAKPVFIDETTCKAETALLGGAVGDSILMPDPLP 210 (568)
Q Consensus 177 pdg~~Las~s~ssd~~~Lls~s~Dg~V~VWDlr~ 210 (568)
. ...+++.-+..+.|.+||+..
T Consensus 252 ~------------SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 N------------SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred c------------ccceeeeeccCceEEEEEccC
Confidence 5 345566667789999999876
No 497
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=55.32 E-value=2.8e+02 Score=29.36 Aligned_cols=143 Identities=14% Similarity=0.060 Sum_probs=88.5
Q ss_pred CCEEEEEECCCcEEEEECCCCceeEEeeCC-CCCcEEEEEEccCCCeEEEEEeCCCeEEEEECCCCCceeE--EeccCCC
Q 008356 6 DEHLASISLSGDLILHNLASGAKAAELKDP-NEQVLRVLDYSRNSRHLLVTAGDDGTLHLWDTTGRSPKVS--WLKQHSA 82 (568)
Q Consensus 6 G~~LasGs~DG~V~VWDl~tg~~v~~l~~~-h~~~Vs~Lafspdg~~lLaTgs~DGtV~VWDl~t~~~~v~--~l~~H~~ 82 (568)
+++...+..+.-++|.|+.+...-..+..- ..+.-.++..+ |+ ++..+..|.-+.++|+.+...++. .......
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 566777777788999998766543332211 22444544444 55 677777566677889966553321 1222233
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEe---ecCCCeEEEEEecCCCEEEEEEcCCeEEEEECCCCC
Q 008356 83 PTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCI---TYEAPFSSLAFIDDDWILTAGTSNGRVVFYDIRGKP 155 (568)
Q Consensus 83 ~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~---~h~~~ItsLafsPdg~~LasGs~DG~V~VWDlrt~~ 155 (568)
....++.+ |++-..+..|+-+.+.|+.....-..+ .....+.++..+++-.+++... --|.+-|..+..
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~s 244 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPS 244 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCC
Confidence 33556665 777788888999999999876433333 3444788888887755555543 357777877764
No 498
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=54.64 E-value=1.3e+02 Score=32.53 Aligned_cols=134 Identities=18% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCCce-------eEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeEee
Q 008356 48 NSRHLLVTAGDDGTLHLWDTTGRSPK-------VSWLKQHSAPTAGISFSSDDKIIASVGLDKKLYTYDPGSRRPSSCIT 120 (568)
Q Consensus 48 dg~~lLaTgs~DGtV~VWDl~t~~~~-------v~~l~~H~~~VtslafsPdg~~LaSgs~DGtV~IWDlrt~~~v~~~~ 120 (568)
+++.++++|..+|.|..-+....... ......-.++...++|...+.-|+.+..---|...+...+.......
T Consensus 74 dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 74 DGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLAD 153 (376)
T ss_pred CCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccc
Confidence 45556788888888877776311100 11111123567789999977556655543334444554443211111
Q ss_pred c--CCC---eEEEEEecCC--------------CEEE---EEEcCCeEEEEECCCCCCceEEEeecCCCCCeeEEEEccC
Q 008356 121 Y--EAP---FSSLAFIDDD--------------WILT---AGTSNGRVVFYDIRGKPQPLTVLRACSSSEAVSSLCWQRA 178 (568)
Q Consensus 121 h--~~~---ItsLafsPdg--------------~~La---sGs~DG~V~VWDlrt~~~~v~~l~~~~h~~~VtsLafspd 178 (568)
. ..+ .+.+...++| ++++ .+..+|++.-||..+... +++- ..-.-.+.++.+|+
T Consensus 154 ~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~--~VLl--d~L~F~NGlaLS~d 229 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVT--KVLL--DGLYFPNGLALSPD 229 (376)
T ss_pred cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecCcccch--hhhh--hcccccccccCCCC
Confidence 0 000 1223333322 1222 244578888899887632 2222 22234567889998
Q ss_pred CCeEEEe
Q 008356 179 KPVFIDE 185 (568)
Q Consensus 179 g~~Las~ 185 (568)
+.+++.+
T Consensus 230 ~sfvl~~ 236 (376)
T KOG1520|consen 230 GSFVLVA 236 (376)
T ss_pred CCEEEEE
Confidence 8776655
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=53.82 E-value=3.7e+02 Score=31.95 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred CccCCCCEEEEEECC---CcEEEEECC-CCc-----------eeEEeeCCCCC--------------------cEEEEEE
Q 008356 1 MYNCKDEHLASISLS---GDLILHNLA-SGA-----------KAAELKDPNEQ--------------------VLRVLDY 45 (568)
Q Consensus 1 afSpdG~~LasGs~D---G~V~VWDl~-tg~-----------~v~~l~~~h~~--------------------~Vs~Laf 45 (568)
+|..+|+.|+.+..+ +.|++|.+. +.. .--.+...... .++.+.|
T Consensus 109 ~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~i 188 (753)
T PF11635_consen 109 APSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEI 188 (753)
T ss_pred eecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEE
Q ss_pred cc------CCCeEEEEEeCCC----eEEEEECCCCCceeEEeccCCCC-------------------------eEEEEEc
Q 008356 46 SR------NSRHLLVTAGDDG----TLHLWDTTGRSPKVSWLKQHSAP-------------------------TAGISFS 90 (568)
Q Consensus 46 sp------dg~~lLaTgs~DG----tV~VWDl~t~~~~v~~l~~H~~~-------------------------Vtslafs 90 (568)
-+ ....++++..... .|.-|.+......++.....-+. |.+++..
T Consensus 189 ls~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~ 268 (753)
T PF11635_consen 189 LSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSP 268 (753)
T ss_pred eccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEec
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeEe----e----------------cCCCeEEEEEecCCCEEEEEEcCCeEE
Q 008356 91 SDDKIIASVGLDKKLYTYDPGSRRPSSCI----T----------------YEAPFSSLAFIDDDWILTAGTSNGRVV 147 (568)
Q Consensus 91 Pdg~~LaSgs~DGtV~IWDlrt~~~v~~~----~----------------h~~~ItsLafsPdg~~LasGs~DG~V~ 147 (568)
.-+..++..-.||+|.++|-.+-+.+... . ....+..++|+|.+..++.-..+|.+.
T Consensus 269 ~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 269 ELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.50 E-value=52 Score=28.19 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred EEEEEccCCCeEEEE-----------------EeCCCeEEEEECCCCCceeEEeccCCCCeEEEEEcCCCCEEEEE--eC
Q 008356 41 RVLDYSRNSRHLLVT-----------------AGDDGTLHLWDTTGRSPKVSWLKQHSAPTAGISFSSDDKIIASV--GL 101 (568)
Q Consensus 41 s~Lafspdg~~lLaT-----------------gs~DGtV~VWDl~t~~~~v~~l~~H~~~VtslafsPdg~~LaSg--s~ 101 (568)
+++++.+++..+.+| +..+|.+..||..+++ ...+...-...+.|++++|+..++.+ ..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~--~~vl~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE--TTVLLDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE--EEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe--EEEehhCCCccCeEEEcCCCCEEEEEeccC
Q ss_pred CCeEEEE
Q 008356 102 DKKLYTY 108 (568)
Q Consensus 102 DGtV~IW 108 (568)
-+..++|
T Consensus 79 ~Ri~ryw 85 (89)
T PF03088_consen 79 YRILRYW 85 (89)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Done!