BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008357
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 96/220 (43%), Gaps = 57/220 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXX-- 413
+VYP + + ++ D++ L+ F+ND IIDFY+KYL + ++E
Sbjct: 22 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 81
Query: 414 ---XXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH 470
K +L +D ++S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 82 YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 141
Query: 471 P------------------------------------GDVASFKVEDLKRSE-------- 486
P S ED + +E
Sbjct: 142 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 201
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHK 521
K PCIL +DS+K A ++N VQ+ YL EW+ + K
Sbjct: 202 MCKRPCILILDSLKA--ASVQNTVQNLREYLEVEWEVKLK 239
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 14 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 73
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 74 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 121
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 122 IHLGVHWCLAVV 133
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 110 IHLGVHWCLAVV 121
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 6 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 65
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 66 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 113
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 114 IHLGVHWCLAVV 125
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 110 IHLGVHWCLAVV 121
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 2 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 61
Query: 397 NQIQAEEKXXXXXXXXXXXXKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + KL A + V++WT+KVD+F D + +P
Sbjct: 62 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 109
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 110 IHLGVHWCLAVV 121
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPS 426
++I+++DI L ++ND II+FY+ L + + + KL
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFFTKLKT------ 64
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVI 468
A + V++WT+KVD+F D + +P++ +HW L V+
Sbjct: 65 ------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVV 100
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + KL
Sbjct: 32 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLK------- 84
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
S G A V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 85 --SGGYQA---VKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK- 126
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
C+ ++DS+ + ++ YL +E K +
Sbjct: 127 ---CLKYLDSMGQKGHRICEILLQYLQDESKTK 156
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + KL
Sbjct: 38 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLK------- 90
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
S G A V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 91 --SGGYQA---VKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK- 132
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
C+ ++DS+ + ++ YL +E K +
Sbjct: 133 ---CLKYLDSMGQKGHRICEILLQYLQDESKTK 162
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLD 422
+ D + I+ RD L P ++NDTII+F++KY+ EK
Sbjct: 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYI-------EKSTPNTVAFNSFFY----- 76
Query: 423 KDPSSISDGKAAFLRVRKWT--RKVDIFGKDYIFIPVNFNL-HWSLIVI 468
+++S+ + VR+W +K I D IF P+N N HW+L +I
Sbjct: 77 ---TNLSE--RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII 120
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLD 422
+ D + I+ RD L P ++NDTII+F++KY+ EK
Sbjct: 29 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYI-------EKSTPNTVAFNSFFY----- 76
Query: 423 KDPSSISDGKAAFLRVRKWT--RKVDIFGKDYIFIPVNFNL-HWSLIVI 468
+++S+ + VR+W +K I D IF P+N N HW+L +I
Sbjct: 77 ---TNLSE--RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII 120
>pdb|2BKQ|A Chain A, Nedd8 Protease
pdb|2BKQ|B Chain B, Nedd8 Protease
pdb|2BKQ|C Chain C, Nedd8 Protease
pdb|2BKQ|D Chain D, Nedd8 Protease
pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
Length = 212
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
+ + D+ LL P +++ND II F +Y N Q + + +P+ I
Sbjct: 13 LRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDSSDHVSFISPEVTQFIKCTSNPAEI 71
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFN-------LHWSLIVICHPGDVASFKVED 481
A FL +D+ K +F+ +N N HWSL+V + + F +
Sbjct: 72 ----AMFL------EPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN-SFFHYDS 120
Query: 482 LKRSEKV 488
RS V
Sbjct: 121 HSRSNSV 127
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 369 ISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKXXXXXXXXXXXXKLADLDKDPSSI 428
+ + D+ LL P +++ND II F +Y N Q + + +P+ I
Sbjct: 13 LRQSDVSLLDPPSWLNDHIIGFAFEYFANS-QFHDCSDHVSFISPEVTQFIKCTSNPAEI 71
Query: 429 SDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFN-------LHWSLIVICHPGDVASFKVED 481
A FL +D+ K +F+ +N N HWSL+V + + F +
Sbjct: 72 ----AMFL------EPLDLPNKRVVFLAINDNSNQAAGGTHWSLLVYLQDKN-SFFHYDS 120
Query: 482 LKRSEKV 488
RS V
Sbjct: 121 HSRSNSV 127
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 309 NWSEQLEKITSLNAKYLALWSVDHDNPVDMDGVG-QRRYFPNFDEPFEDVVYPEGDSDAV 367
+W L + + + + LWS + D+ +M G RY PN+ PF + + D A
Sbjct: 39 SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNY--PFPETLKAYCDLKAS 96
Query: 368 SISKRDIDLLQPDTFVNDTI 387
DI ++ P ++ I
Sbjct: 97 LEGVTDILIVVPSFAFHEVI 116
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 261 IVDIKFQWLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSL 320
+VD QW R V +L V V D ++ G++ L S N E+L+K+ S+
Sbjct: 18 VVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSGGAPNIDEELDKLGSV 77
Query: 321 NAKYLALWSVDHDNPVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSI 369
KY+ DH+ P+ VG + +F +PE VS+
Sbjct: 78 -GKYID----DHNYPILGICVGAQFIALHFGASVVKAKHPEFGKTKVSV 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,389,966
Number of Sequences: 62578
Number of extensions: 732865
Number of successful extensions: 1415
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 19
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)