BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008357
(568 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis
thaliana GN=ULP2B PE=2 SV=3
Length = 931
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 277/577 (48%), Positives = 360/577 (62%), Gaps = 45/577 (7%)
Query: 1 MKSELGVFDFKEEDELPELEAGKFLGKFKNPNNDDSPALKRELLECVTKETIVQIEGIGN 60
MK VFDFKEEDEL E AGK L KF NP+ +SP L+R+ ++ E V+ E +
Sbjct: 1 MKKNFEVFDFKEEDELAESAAGKLLEKFTNPSPCNSPVLQRQRIQSFCNEKRVEEEEMEG 60
Query: 61 VPCVN-ADAVDCA-PSCNVDCAPSCNEQMCAPMKIGGEEGND----IRAPQMN------- 107
C A AV+ C D + + G E D A +N
Sbjct: 61 PSCAEPATAVESDDHQCEDDSTLVTEAKESRTILTFGLETTDHLEETDAEHVNQGLMLGL 120
Query: 108 -STSCEQSPNLEKDNCGF-------------------ESCISELASRDLCTKGPLLGESQ 147
+ + +++ DN G ES +L + + Q
Sbjct: 121 KTEDLAKETDIDHDNHGLMFGLNSEDDIEETDVDHRVESFSCQLGGNSFYAETSSYSQRQ 180
Query: 148 LCSGNLDPPSNNEPVDVNSDADGSMSEGSSSSPASDIAPNGVSLNGHMSDQWVDDSEVDD 207
L S D S+ E +D+ S D S+S+ S+ S ASD + M++ +D E D
Sbjct: 181 LNSPFSDSSSSEEQIDMMSAIDESLSDRSALSEASDSEDDE---EDWMTEHCFNDEEKID 237
Query: 208 INMGVVVSPDYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQ 267
++ V+++ +YV +D C LV+FSC GIKIK A + F+ E G++DIV I++
Sbjct: 238 LSTAVIMTSEYVILKDMHCAASLVIFSCNGIKIKSFLANNEEVPFSCEFGVEDIVSIQYN 297
Query: 268 WLQRFGSVEVKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLAL 327
W Q G + +++ V+L D C +EELK + + NW + +KI SL+ KY A+
Sbjct: 298 WYQNVGLIILRIRVLLKD-----ENCH-EDMEELKIAVKEHNWPNKQQKINSLHVKYPAV 351
Query: 328 WSVDHDNPVDMDGVG---QRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVN 384
W+ D ++ V++ G Q+RYFP+FDEPFEDVVYP+GD DAVSI KRD++LLQP+TFVN
Sbjct: 352 WNTDLEDDVEVSGYNLNQQKRYFPSFDEPFEDVVYPKGDPDAVSICKRDVELLQPETFVN 411
Query: 385 DTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK 444
DTIIDFYI YLKNQIQ EEKHRFHFFNSFFFRKLADLDKDPSSI+DGKAAFLRVRKWTRK
Sbjct: 412 DTIIDFYINYLKNQIQTEEKHRFHFFNSFFFRKLADLDKDPSSIADGKAAFLRVRKWTRK 471
Query: 445 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGL 504
VD+FGKDYIF+PVN+NLHWSLIVICHPG+VA+ DL S+KVPCILHMDSIKG+HAGL
Sbjct: 472 VDMFGKDYIFVPVNYNLHWSLIVICHPGEVANRTDLDLDDSKKVPCILHMDSIKGSHAGL 531
Query: 505 KNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEV 541
KNLVQ+YLCEEWKERHK+TS+D+SS+F+N RF+ LE+
Sbjct: 532 KNLVQTYLCEEWKERHKETSDDISSRFMNLRFVSLEL 568
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 236/388 (60%), Gaps = 13/388 (3%)
Query: 163 DVNSDADGSMSEGSS------SSPASDIAPNGVSLNGHMSDQWVDDSEVDDINMGVVVSP 216
D NSD +S GS S +S ++ N G ++ D EVD N V++ P
Sbjct: 93 DGNSDLIDVISNGSHRRIGIDSLTSSSLSENDEVSTGEATNPASDPHEVDPENAQVLIIP 152
Query: 217 DYVFFRDKFCLGYLVVFSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVE 276
D + + D +C + FS + ++ S+ + +F+ + I+DI+ I+ QW +
Sbjct: 153 DVIIYGDIYCTNSKLTFSRNCMNVESSSVNATKGTFSCQWTIEDIIKIESQWCLEVETAF 212
Query: 277 VKLHVILNDVAQDDNACGTSGIEELKFSFSDCNWSEQLEKITSLNAKYLALW--SVDHDN 334
V + + D A SGI+ LKFS D WS+++E I SL+++Y +W ++
Sbjct: 213 VNVLLKSRKPEGVDIAKDISGIDLLKFSVYDPKWSKEVETIRSLDSRYKNIWFDTITESE 272
Query: 335 PVDMDGVGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKY 394
+ G N + FED+VYP+G+ DAV + K+DI+LL+P F+NDTIIDFYIKY
Sbjct: 273 EIAFSGHDLGTSLTNLADSFEDLVYPQGEPDAVVVRKQDIELLKPRRFINDTIIDFYIKY 332
Query: 395 LKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIF 454
LKN+I +E+ RFHFFN FFFRKLA+LDK S G+ A+ RV+KWT+ VD+F KDYIF
Sbjct: 333 LKNRISPKERGRFHFFNCFFFRKLANLDKGTPSTCGGREAYQRVQKWTKNVDLFEKDYIF 392
Query: 455 IPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTH-AGLKNLVQSYLC 513
IP+N + HWSL++ICHPG++ VE+ +R VPCILH+DSIKG+H GL N+ SYL
Sbjct: 393 IPINCSFHWSLVIICHPGELVPSHVENPQR---VPCILHLDSIKGSHKGGLINIFPSYLR 449
Query: 514 EEWKERHKDTSEDVSSKFLNFRFIPLEV 541
EEWK RH++T+ D SS+ N + I LE+
Sbjct: 450 EEWKARHENTTND-SSRAPNMQSISLEL 476
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2
Length = 638
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 31/188 (16%)
Query: 357 VVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEE---KHRFHFFNSF 413
+VYP +++++I+ D+ L F+NDTI+DFY++YL ++Q + + H FN+F
Sbjct: 337 LVYPFSGTNSIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQNPSLANDTHIFNTF 396
Query: 414 FFRKLADLDKDPSSISDGKAAFLR-VRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH-- 470
F+ +L DKD GK R VRKWT+KVD+F K YI +P+N HW L +IC+
Sbjct: 397 FYNRLTSKDKD------GKRLGHRGVRKWTQKVDLFHKKYIIVPINETFHWYLAIICNID 450
Query: 471 ---PGDV----------------ASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSY 511
P D ++ K + + P IL DS+ H G N ++ Y
Sbjct: 451 RLMPVDTKLEEQDEIVMSSVEQPSASKTRQAELTSNSPAILIFDSLANLHKGALNYLREY 510
Query: 512 LCEEWKER 519
L EE ER
Sbjct: 511 LLEEAFER 518
>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana
GN=ULP1C PE=1 SV=1
Length = 571
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 21/192 (10%)
Query: 355 EDVVYPEGDS----DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRF--H 408
ED+ YP D D V +S +D+ L P ++ +I+FYI+Y+++ + + +K H
Sbjct: 315 EDIYYPSSDQSDGRDLVQVSLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCH 374
Query: 409 FFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVI 468
FFN+FF++KL + + D A F++ R+W + D+F K YIFIP++ +LHWSL++I
Sbjct: 375 FFNTFFYKKLTEAVSYKGN--DRDAYFVKFRRWWKGFDLFCKSYIFIPIHEDLHWSLVII 432
Query: 469 CHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAG--LKNLVQSYLCEEWKERHKDTSED 526
C P K E I+H+DS+ G H + N V+ +L EEW ++D D
Sbjct: 433 CIPD----------KEDESGLTIIHLDSL-GLHPRNLIFNNVKRFLREEWNYLNQDAPLD 481
Query: 527 VSSKFLNFRFIP 538
+ +R +P
Sbjct: 482 LPISAKVWRDLP 493
>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 57/224 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEE-KHRFHFFNSFF 414
+VYP + + ++ D++ L+ F+ND IIDFY+KYL + ++E R H F+SFF
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKASDELVERSHIFSSFF 795
Query: 415 F----RKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVIC- 469
+ RK +L +D +S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 796 YKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 855
Query: 470 -----------------------------------HPGDVASFKVEDLKRSE-------- 486
H S ED + +E
Sbjct: 856 PWLEEAVYEDCPQTVSQQFQGQQSQHDHKMTDNDPHTTSTVSTSAEDSQSTEVNMSVPKK 915
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHKDTSE 525
K PCIL +DS+K A ++N VQ+ YL EW+ + K E
Sbjct: 916 MCKRPCILILDSLKA--ASIQNTVQNLREYLEVEWEVKRKTHRE 957
>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4
Length = 1050
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 105/220 (47%), Gaps = 57/220 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEE-KHRFHFFNSFF 414
+VYP + + ++ D++ L+ F+ND IIDFY+KYL + ++E R H F+SFF
Sbjct: 749 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 808
Query: 415 F----RKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICH 470
+ RK +L +D ++S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 809 YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 868
Query: 471 P------------------------------------GDVASFKVEDLKRSE-------- 486
P S ED + +E
Sbjct: 869 PWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKK 928
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHK 521
K PCIL +DS+K A ++N VQ+ YL EW+ + K
Sbjct: 929 MCKRPCILILDSLKA--ASVQNTVQNLREYLEVEWEVKLK 966
>sp|A7MBJ2|SENP7_BOVIN Sentrin-specific protease 7 OS=Bos taurus GN=SENP7 PE=2 SV=1
Length = 1047
Score = 102 bits (255), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 57/224 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEE-KHRFHFFNSFF 414
+VYP + + ++ D++ L+ F+ND IIDFY+KYL + ++E R H F+SFF
Sbjct: 746 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFF 805
Query: 415 F----RKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVIC- 469
+ RK +L +D ++S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 806 YKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 865
Query: 470 -----------------------------------HPGDVASFKVEDLKRSE-------- 486
H S ED + E
Sbjct: 866 PWLEEVVYEDFPQTIPQYSQAEESHHDSRTIDNDLHTSSALSSGTEDSQSPEMNVTVPKK 925
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHKDTSE 525
K PCIL +DS+K A ++N VQ+ YL EW+ + K E
Sbjct: 926 MCKRPCILILDSLKA--ASIQNTVQNLREYLEVEWEVKRKTHRE 967
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 97/167 (58%), Gaps = 18/167 (10%)
Query: 355 EDVVYP-EGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRF--HFFN 411
ED+ YP D V + +D++ L P ++ +++FY+++L+ QI + + HFFN
Sbjct: 330 EDICYPTRDDPHFVQVCLKDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFN 389
Query: 412 SFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHP 471
++F++KL+D + D A F+R R+W + +D+F K YIFIP++ +LHWSL+++C P
Sbjct: 390 TYFYKKLSDAVTYKGN--DKDAFFVRFRRWWKGIDLFRKAYIFIPIHEDLHWSLVIVCIP 447
Query: 472 GDVASFKVEDLKRSEKVPCILHMDSIKGTHA--GLKNLVQSYLCEEW 516
K+ E ILH+DS+ G H+ + V+ +L +EW
Sbjct: 448 D----------KKDESGLTILHLDSL-GLHSRKSIVENVKRFLKDEW 483
>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1
Length = 1037
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 104/224 (46%), Gaps = 57/224 (25%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEE-KHRFHFFNSFF 414
+VYP + + ++ D++ L+ F+ND IIDFY+KYL + ++E R H F+SFF
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKASDELVERSHIFSSFF 795
Query: 415 F----RKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVIC- 469
+ RK +L +D +S + RVR WTR ++IF KDYIF+PVN + HW L VIC
Sbjct: 796 YKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICF 855
Query: 470 -----------------------------------HPGDVASFKVEDLKRSE-------- 486
H E+ + +E
Sbjct: 856 PWLEEAVYEDFPQTVSQEFQDQQSQHDNKTIDNDPHTTSTVFTSAEESQSTETSMSVPKK 915
Query: 487 --KVPCILHMDSIKGTHAGLKNLVQS---YLCEEWKERHKDTSE 525
K PCIL +DS+K A ++N VQ+ YL EW+ + K E
Sbjct: 916 MCKRPCILILDSLKA--ASIQNTVQNLREYLEVEWEVKRKTHRE 957
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 6/129 (4%)
Query: 350 FDEPFED-VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLK-NQIQAEEKHR 406
F P E +VYP + +S++ D+ L F+ND IIDFY+KYL +++ E+ R
Sbjct: 667 FIGPVEKLIVYPPPPAKGGISVTNEDLHCLSEGEFLNDVIIDFYLKYLVLEKLKKEDADR 726
Query: 407 FHFFNSFFFRKLADLDK---DPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHW 463
H F+SFF+++L ++ + +++S + RV+ WTR VDIF KD+IF+P+N HW
Sbjct: 727 IHIFSSFFYKRLNQRERRNPETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHW 786
Query: 464 SLIVICHPG 472
L V+C PG
Sbjct: 787 FLAVVCFPG 795
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 5/121 (4%)
Query: 357 VVYPEGDSDA-VSISKRDIDLLQPDTFVNDTIIDFYIKYLK-NQIQAEEKHRFHFFNSFF 414
+VYP + +S++ D+ L F+ND IIDFY+KYL +++ E+ R H F+SFF
Sbjct: 655 IVYPPPPAKGGISVTNEDLHCLNEGEFLNDVIIDFYLKYLVLEKLKKEDADRIHIFSSFF 714
Query: 415 FRKLADLDK---DPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHP 471
+++L ++ + +++S + RV+ WTR VDIF KD+IF+P+N HW L V+C P
Sbjct: 715 YKRLNQRERRNHETTNLSIQQKRHGRVKTWTRHVDIFEKDFIFVPLNEAAHWFLAVVCFP 774
Query: 472 G 472
G
Sbjct: 775 G 775
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 38/179 (21%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 416 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 475
Query: 397 NQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + H FN+FFF KL A + V++WT+KVD+F D + +P
Sbjct: 476 ERSKEKGFPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 523
Query: 457 VNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEE 515
++ +HW L V+ D +R I + DS+ G + ++ YL +E
Sbjct: 524 IHLGVHWCLAVV------------DFRRK----SITYYDSMGGINNEACRILLQYLKQE 566
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 420 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 479
Query: 397 NQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + H FN+FFF KL A + V++WT+KVD+F D + +P
Sbjct: 480 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 527
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 528 IHLGVHWCLAVV 539
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 22/132 (16%)
Query: 347 FPNFDEPFEDV---VYPEGDSDAV-------SISKRDIDLLQPDTFVNDTIIDFYIKYLK 396
FP E E V+ G+ D V +I+++DI L ++ND II+FY+ L
Sbjct: 421 FPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLM 480
Query: 397 NQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIP 456
+ + + H FN+FFF KL A + V++WT+KVD+F D + +P
Sbjct: 481 ERSKEKGLPSVHAFNTFFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVP 528
Query: 457 VNFNLHWSLIVI 468
++ +HW L V+
Sbjct: 529 IHLGVHWCLAVV 540
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP2 PE=1 SV=1
Length = 1034
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 26/175 (14%)
Query: 359 YPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIK-YLKNQIQAE--EKHRFHFFNSFFF 415
Y D + +I+ +D L +VND+I+DF+ K Y+++ I+ ++ + H +SFF+
Sbjct: 434 YKFNDGSSYTITNQDFKCLFNKDWVNDSILDFFTKFYIESSIEKSIIKREQVHLMSSFFY 493
Query: 416 RKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVA 475
KL IS+ + V+KW D+F K Y+ IP+N + HW +I + +
Sbjct: 494 TKL---------ISNPADYYSNVKKWVNNTDLFSKKYVVIPINISYHWFSCIITNLDAIL 544
Query: 476 SFKV----EDLKRSEKVPC------ILHMDSIKGTHAG----LKNLVQSYLCEEW 516
F D S+++ IL DS++ TH+ +K + SY +++
Sbjct: 545 DFHQNKDKNDAINSDEISINNPLVNILTFDSLRQTHSREIDPIKEFLISYALDKY 599
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 17/119 (14%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKH-RFHFFNSFFFRKLADL 421
D+ ++ I K+D+ L ++ND II+FY++ + ++ + K+ + + FN+FF+ +
Sbjct: 497 DAFSIQICKKDLATLSGLHWLNDEIINFYLQLICDRSNGDSKYPKIYAFNTFFYSNI--- 553
Query: 422 DKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVE 480
+S G A+ V++WTRKVDIF D + +PV+ +HW + VI D+ K+E
Sbjct: 554 ------VSKGYAS---VKRWTRKVDIFAFDIVLVPVHLGMHWCMAVI----DMGEKKIE 599
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRF--HFFNSFFFRKLADLDKD 424
+ I+ + L P ++ND +I+ Y++ LK + E K H+FN+FF++KL
Sbjct: 288 IDITGEVLQCLTPSAWLNDEVINVYLELLKERETREPKKYLKCHYFNTFFYKKL------ 341
Query: 425 PSSISDGKAAFLRVRKWT--RKVD--IFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVE 480
+SD F VR+WT RK+ + D IF+P++ +HW+L VI +
Sbjct: 342 ---VSDSGYNFKAVRRWTTQRKLGYALIDCDMIFVPIHRGVHWTLAVINN---------- 388
Query: 481 DLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
R K +L++DS+ G + N + Y+ +E E+
Sbjct: 389 ---RESK---LLYLDSLNGVDPMILNALAKYMGDEANEK 421
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + H F++FF+ KL
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------ 448
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
+ V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 449 ------GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK- 489
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERH 520
C+ ++DS+ + ++ YL +E K +
Sbjct: 490 ---CLKYLDSMGQKGHRICEILLQYLQDESKTKR 520
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 77/154 (50%), Gaps = 28/154 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + H F++FF+ KL
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------ 448
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
+ V++WT+ V++F ++ I +P++ +HWSL+VI DL++
Sbjct: 449 ------GGYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------------DLRKK- 489
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERH 520
C+ ++DS+ + ++ YL +E K +
Sbjct: 490 ---CLKYLDSMGQKGHRICEILLQYLQDESKTKR 520
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 373 DIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGK 432
D+ L ++ND +I+ Y + + + + + HFFNSFF R+L
Sbjct: 573 DLATLDGQNWLNDQVINMYGELIMDAV----PDKVHFFNSFFHRQLVT------------ 616
Query: 433 AAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASF 477
+ V++WT+KVD+F K + IP++ +HWSLI + + SF
Sbjct: 617 KGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNRIISF 661
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 373 DIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGK 432
D+ L ++ND +I+ Y + + + + + HFFNSFF R+L
Sbjct: 573 DLATLDGQNWLNDQVINMYGELIMDAV----PDKVHFFNSFFHRQLVT------------ 616
Query: 433 AAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASF 477
+ V++WT+KVD+F K + IP++ +HWSLI + + SF
Sbjct: 617 KGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNRIISF 661
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 373 DIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGK 432
D+ L ++ND +I+ Y + + + + + HFFNSFF R+L
Sbjct: 567 DLATLDGQNWLNDQVINMYGELIMDAV----PDKVHFFNSFFHRQLVT------------ 610
Query: 433 AAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASF 477
+ V++WT+KVD+F K + IP++ +HWSLI + + SF
Sbjct: 611 KGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSSRIISF 655
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 77/153 (50%), Gaps = 28/153 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + H F++FF+ KL
Sbjct: 394 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHAFSTFFYPKLKS------ 447
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
+ V++WT+ V++F ++ + +P++ +HWSL+V+ DL++
Sbjct: 448 ------GGYQAVKRWTKGVNLFEQELVLVPIHRKVHWSLVVM------------DLRKK- 488
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
C+ ++DS+ + ++ YL +E K +
Sbjct: 489 ---CLKYLDSMGQKGHRICEILLQYLQDESKTK 518
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 32/160 (20%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRF---HFFNSFFFRKLADLDK 423
+ I+ + + L+P ++ND +I+ Y+ LK + +A E +F HFFN+FFF KL +
Sbjct: 300 IDITGKILRCLKPGKWLNDEVINLYMVLLKER-EAREPKKFLKCHFFNTFFFTKLVN--- 355
Query: 424 DPSSISDGKAAFLRVRKWT--RKVDIFGKD--YIFIPVNFNLHWSLIVICHPGDVASFKV 479
S + VR+WT +++ KD IFIP++ N+HW+L VI +
Sbjct: 356 -----SATGYNYGAVRRWTSMKRLGYHLKDCDKIFIPIHMNIHWTLAVI---------NI 401
Query: 480 EDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
+D K ++DS KG + + + Y +E +++
Sbjct: 402 KDQK-------FQYLDSFKGREPKILDALARYFVDEVRDK 434
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 28/153 (18%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
+ I++ DI L+ ++ND +I+FY+ L + + + H ++FF+ KL
Sbjct: 394 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHALSTFFYPKLKS------ 447
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSE 486
+ V++WT+ V++F ++ + +P++ +HWSL+V+ DL++
Sbjct: 448 ------GGYQAVKRWTKGVNLFDQELVLVPIHRKVHWSLVVM------------DLRKK- 488
Query: 487 KVPCILHMDSIKGTHAGLKNLVQSYLCEEWKER 519
C+ ++DS+ + ++ YL +E K +
Sbjct: 489 ---CLKYLDSMGQKGHRICEILLQYLQDESKTK 518
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Query: 373 DIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGK 432
D+ L ++ND +++ Y + + + + HFFNSFF+ KL D
Sbjct: 392 DLGTLYGQNWLNDQVMNMYGDLVMDTV----PEKVHFFNSFFYDKLRTKGYD-------- 439
Query: 433 AAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVI 468
V++WT+ VDIF K+ + IP++ +HWSLI +
Sbjct: 440 ----GVKRWTKNVDIFNKELLLIPIHLEVHWSLISV 471
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 16/96 (16%)
Query: 373 DIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGK 432
D+ L ++ND +++ Y + + + + HFFNSFF+ KL D
Sbjct: 386 DLGTLYGQNWLNDQVMNMYGDLVMDTV----PEKVHFFNSFFYDKLRTKGYD-------- 433
Query: 433 AAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVI 468
V++WT+ VDIF K+ + IP++ +HWSLI +
Sbjct: 434 ----GVKRWTKNVDIFNKELLLIPIHLEVHWSLISV 465
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 33/170 (19%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRF--HFFNSFFFRKLADLDKD 424
+ IS + L+P+ ++ND + + Y++ LK + + + F HFFN+FF+ KL
Sbjct: 139 IDISGETLQCLRPNQWLNDDVTNLYLELLKERQTRDPQKYFKCHFFNTFFYVKL------ 192
Query: 425 PSSISDGKAAFLRVRKWTRK----VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVE 480
+S + V +WT K D+ D IF+P++ ++HW+L VI +
Sbjct: 193 ---VSGSGYNYKAVSRWTTKRKLGYDLIDCDIIFVPIHIDIHWTLGVINN---------- 239
Query: 481 DLKRSEKVPCILHMDSI-KGTHAGLKNLVQSYLCEEWKERHKDTSEDVSS 529
R K +++DS+ G + N + YL +E K++ + DVSS
Sbjct: 240 ---RERK---FVYLDSLFTGVGHTILNAMAKYLVDEVKQKSQKNI-DVSS 282
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 31/154 (20%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNSFFFRKLADLDKDP 425
+ I+ +D+ L+ ++ND +I+FY+ + + + + R H FN+FF+ L
Sbjct: 377 IPITLKDLHTLRNRQWLNDEVINFYMNLISERSKIDSSLPRVHGFNTFFYTSLQ------ 430
Query: 426 SSISDGKAAFLRVRKWTRK--VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLK 483
+ + VR+W +K V+I D +FIPV+ ++HW + VI + K
Sbjct: 431 ------RRGYAGVRRWAKKARVNIADMDAVFIPVHLDVHWCMAVIN----------KSKK 474
Query: 484 RSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWK 517
R E + DS+ G+ + +L++ Y E K
Sbjct: 475 RFE------YWDSLAGSPGKVFDLLRDYYIAETK 502
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 20/109 (18%)
Query: 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLD 422
+ D + I+ RD L P ++NDTII+F++KY++ FNSFF+ L++
Sbjct: 429 NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVA-----FNSFFYTNLSE-- 481
Query: 423 KDPSSISDGKAAFLRVRKW--TRKVDIFGKDYIFIPVNFNL-HWSLIVI 468
+ VR+W +K I D IF P+N N HW+L +I
Sbjct: 482 ----------RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGII 520
>sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 OS=Caenorhabditis elegans GN=ulp-4
PE=3 SV=2
Length = 382
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHR------FHFFNSFFFRKLA 419
+++I D LQ +NDT+IDFY+ ++ + + F+++ R+ A
Sbjct: 130 SIAIRISDFCCLQEKDLLNDTMIDFYLNHIVEHVLPDSNGSNVTVLPSIFWHNLSLRQHA 189
Query: 420 DLDKDPSSISDGKAAFLR---VRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHP 471
+D +SD + L+ + + D+ DYI +PVN HWSL VICHP
Sbjct: 190 FDSEDEKMMSDEQKMDLKFGDLHDFVADFDLQDFDYIVVPVNEWEHWSLAVICHP 244
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus
GN=Pkd1l3 PE=2 SV=2
Length = 2201
Score = 35.4 bits (80), Expect = 1.1, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 151 GNLDPPSNNEPVDVNSDADGSMS--EGSSSSPASDIAPNGVS 190
G LD PS++ P SD S S +G+S +PAS+ P G S
Sbjct: 359 GTLDTPSSSSPPQGTSDTPASSSPPQGTSETPASNSPPQGTS 400
>sp|O13612|NEP2_SCHPO NEDD8-specific protease 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nep2 PE=1 SV=1
Length = 415
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 24/114 (21%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQI----QAEEKHRFHFFNSFFFRKLADLD 422
VS+ K D+D +P ++ DT IDF+ + + Q+ EE + + LA
Sbjct: 76 VSLRKNDVDHFRPGYWILDTNIDFFYEIMLRQVLLKRPKEESQQIYLLRPAMVFFLAQAP 135
Query: 423 KDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVN--------FNLHWSLIVI 468
+P I + F +IF+P+N HWSL+V+
Sbjct: 136 -NPLEIESALPPAM-----------FDASFIFLPINDTNECGIESGSHWSLLVV 177
>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2
SV=1
Length = 226
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 23/110 (20%)
Query: 367 VSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPS 426
V + + D+D+L F+ND +I+FY+ +L + +F+ D +
Sbjct: 16 VVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSIAFWISNCPDTE---- 71
Query: 427 SISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFN---------LHWSLIV 467
++ + + +++ KD + +PVN N LHWSL+V
Sbjct: 72 ----------YLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLV 111
>sp|Q4ZNR4|TRUB_PSEU2 tRNA pseudouridine synthase B OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=truB PE=3 SV=1
Length = 305
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 465 LIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS 524
L V C G VED+ EK+ C ++ ++ T AG L Q+ EE ++ H D
Sbjct: 170 LSVDCSKGTYIRTLVEDI--GEKLGCGAYVAELRRTQAGPFTLAQTVTLEELEQVHADGG 227
Query: 525 EDVSSKFL 532
+ +FL
Sbjct: 228 NEAVDRFL 235
>sp|Q48E79|TRUB_PSE14 tRNA pseudouridine synthase B OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=truB PE=3 SV=1
Length = 305
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 465 LIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS 524
L V C G VED+ EK+ C ++ ++ T AG L Q+ EE ++ H D
Sbjct: 170 LSVDCSKGTYIRTLVEDI--GEKLGCGAYVAELRRTQAGPFTLAQTVTLEELEQVHADGG 227
Query: 525 EDVSSKFL 532
+ +FL
Sbjct: 228 NEAVDRFL 235
>sp|Q82ZJ2|PNP_ENTFA Polyribonucleotide nucleotidyltransferase OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=pnp PE=3 SV=1
Length = 704
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 349 NFDEPFEDVVYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEK 404
FD E V + E AV K D+DLLQ D + I D Y +K + EEK
Sbjct: 207 GFDAIKELVAFQEEIVAAVGKPKMDVDLLQVDADLKKEIFDAYYNTMKTAVMTEEK 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,829,283
Number of Sequences: 539616
Number of extensions: 10335184
Number of successful extensions: 23128
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 23016
Number of HSP's gapped (non-prelim): 82
length of query: 568
length of database: 191,569,459
effective HSP length: 123
effective length of query: 445
effective length of database: 125,196,691
effective search space: 55712527495
effective search space used: 55712527495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)