Query 008357
Match_columns 568
No_of_seqs 188 out of 853
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 22:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0778 Protease, Ulp1 family 100.0 8.6E-39 1.9E-43 344.1 11.8 167 365-563 316-484 (511)
2 COG5160 ULP1 Protease, Ulp1 fa 100.0 6.8E-38 1.5E-42 333.1 12.1 170 358-563 372-543 (578)
3 PLN03189 Protease specific for 100.0 7.1E-37 1.5E-41 327.0 19.0 173 363-563 284-463 (490)
4 PF02902 Peptidase_C48: Ulp1 p 99.9 3.1E-26 6.7E-31 221.3 15.9 164 381-564 1-184 (216)
5 KOG3246 Sentrin-specific cyste 99.9 1.4E-22 3.1E-27 197.2 13.2 154 366-564 16-183 (223)
6 KOG0779 Protease, Ulp1 family 99.6 8.5E-16 1.8E-20 172.1 4.8 186 366-563 352-550 (595)
7 PF03290 Peptidase_C57: Vaccin 95.5 0.032 6.8E-07 59.9 7.1 101 448-562 229-344 (423)
8 PRK11836 deubiquitinase; Provi 94.2 0.13 2.7E-06 53.7 7.1 107 444-563 213-327 (403)
9 PRK14848 deubiquitinase SseL; 91.0 0.37 8E-06 49.5 5.2 84 450-558 188-271 (317)
10 KOG0779 Protease, Ulp1 family 80.3 0.61 1.3E-05 53.6 0.5 246 233-500 7-270 (595)
11 PF00770 Peptidase_C5: Adenovi 33.7 1.4E+02 0.0031 29.6 6.8 81 460-562 33-116 (183)
12 PF03421 YopJ: YopJ Serine/Thr 30.9 2.4E+02 0.0051 27.7 8.0 62 487-560 96-160 (177)
13 PHA02130 hypothetical protein 25.8 38 0.00082 28.4 1.3 37 433-469 14-51 (81)
No 1
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-39 Score=344.07 Aligned_cols=167 Identities=30% Similarity=0.557 Sum_probs=146.2
Q ss_pred CceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhc-cCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q 008357 365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAE-EKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR 443 (568)
Q Consensus 365 ~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~-~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtk 443 (568)
.+|.||.+||+||.+++||||+||||||++|.++.... +-+++|+||||||++|.. .+|+.|+|||+
T Consensus 316 ~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~yp~~h~FnTFFy~kL~~------------~gy~~VkRWTk 383 (511)
T KOG0778|consen 316 FNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSKYPKVHAFNTFFYTKLVG------------RGYAGVKRWTK 383 (511)
T ss_pred ccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCCCceEEEEechhhhhhhh------------cchHHHHhHhh
Confidence 45999999999999999999999999999999986543 257899999999999985 58999999999
Q ss_pred cccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCC
Q 008357 444 KVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDT 523 (568)
Q Consensus 444 kvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~ 523 (568)
+++||++|.||||||.+.||+|+||++. +++|.|||||++...+++++|++||++|+..|.+..
T Consensus 384 ~v~if~~d~i~vPIH~~vHW~l~vid~r----------------~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~~~k~~~~ 447 (511)
T KOG0778|consen 384 KVDIFDKDIIFVPIHLGVHWCLAVIDLR----------------EKTIEYYDSLGGGPNRICDALAKYLQDESRDKSKKD 447 (511)
T ss_pred ccCccccceeEeeeecCceEEEEEEEcc----------------cceEEEeeccCCCCcchHHHHHHHHHHHHhhhhcCC
Confidence 9999999999999999999999999863 479999999998776666999999999999998876
Q ss_pred CccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 524 SEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 524 ~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
+ |+ +.|.. .+ ..++|||.||+ ||+|+++|+.+...-
T Consensus 448 ~-d~-s~w~~-~~-~~~iP~Q~Ng~DCG~f~c~~~~~~s~~ 484 (511)
T KOG0778|consen 448 F-DV-SGWTI-EF-VQNIPQQRNGSDCGMFVCKYADYISRD 484 (511)
T ss_pred C-Cc-cchhh-hh-hhccccccCCCccceEEeeechhhccC
Confidence 5 33 36863 33 35899999997 999999998887543
No 2
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=333.14 Aligned_cols=170 Identities=34% Similarity=0.630 Sum_probs=153.1
Q ss_pred ecCCCCCCceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhh-hccCCcEEEechHHHHHhhccCCCCCCcchhhHHHH
Q 008357 358 VYPEGDSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQ-AEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFL 436 (568)
Q Consensus 358 ~yp~~~~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~-~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~ 436 (568)
.||..+..+|+|+-+|+.||.+++||||+||||||+||...-. ...++++|+||||||++|.. .+|+
T Consensus 372 ~~~~~~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~~s~~~~vh~FnTFFYT~Lsr------------rGy~ 439 (578)
T COG5160 372 CYPFNDRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKNTSKREQVHLFNTFFYTKLSR------------RGYS 439 (578)
T ss_pred cccccCcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccCcccccceEEeehhhHHHHHH------------HHhH
Confidence 5999999999999999999999999999999999999965532 33578999999999999984 6999
Q ss_pred HHHhhhhcccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHH
Q 008357 437 RVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516 (568)
Q Consensus 437 ~VkrWtkkvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~ 516 (568)
+|+||+++++||+++|||||||...||+|+||+++. +.|+|||||++.+..+++.|+.||.+||
T Consensus 440 gVrrW~kk~dif~~k~I~iPIni~~HW~l~II~~~~----------------~~i~~~DSLan~~~~v~~~L~~Y~ldE~ 503 (578)
T COG5160 440 GVRRWTKKTDIFSKKYIFIPINISYHWFLAIIDNPK----------------KNILYFDSLANTHDPVLEFLRSYLLDEY 503 (578)
T ss_pred HHHHHHhccCccccceEEEEecccceEEEEEeecCc----------------ceeEEecccccCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864 6899999999999999999999999999
Q ss_pred HhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 517 KERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 517 k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
+..++.. .| +++...++|||.||. |||||++|.++|+..
T Consensus 504 k~~~~k~------~~--~~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~~ 543 (578)
T COG5160 504 KIQHDKD------PQ--IKMKHCKVPQQRNGSDCGVFVCMFIRYFLEN 543 (578)
T ss_pred hcccCCc------hh--hhhhcCCCCCCCCCCccceEEEEeeeecccC
Confidence 9877653 13 246688999999996 999999999998764
No 3
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional
Probab=100.00 E-value=7.1e-37 Score=327.02 Aligned_cols=173 Identities=24% Similarity=0.494 Sum_probs=146.0
Q ss_pred CCCceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhh--ccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHh
Q 008357 363 DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQA--EEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRK 440 (568)
Q Consensus 363 ~~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~--~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~Vkr 440 (568)
++.++.||++|+.||.|++||||+|||||++||.++... ....++|+||||||++|.... ...+|.+|+|
T Consensus 284 ~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~h~FNTFFytkL~~~~--------~~ygY~~VrR 355 (490)
T PLN03189 284 ENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKLVSGK--------SGYDYKAVRR 355 (490)
T ss_pred CCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccceEEEehHHHHHHhhcC--------CcCChHHHHH
Confidence 356899999999999999999999999999999876432 233689999999999998631 1247999999
Q ss_pred hhhc----ccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHH
Q 008357 441 WTRK----VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEW 516 (568)
Q Consensus 441 Wtkk----vdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~ 516 (568)
|+++ ++||++++||||||.+.||+|+||+++. ++|+|||||++.+..+++.|++||..|+
T Consensus 356 WTk~kKigv~Lfs~D~IFIPIh~n~HWsLaVId~k~----------------k~I~yyDSLgg~~~~vL~~L~rYL~~E~ 419 (490)
T PLN03189 356 WTTQKKLGYHLIDCDKIFVPIHQEIHWTLAVINKKD----------------QKFQYLDSLKGRDPKILDALAKYYVDEV 419 (490)
T ss_pred HhhhcccccccccCceEEeeeecCCeeEEEEEEcCC----------------CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9974 4799999999999999999999999864 6999999999999889999999999999
Q ss_pred HhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 517 KERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 517 k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
+.+++..+ ++ +.|.. . .+.++|||.||+ ||+|+|+||+++...
T Consensus 420 kdK~g~d~-D~-s~W~~-~-~~~~vPQQ~NG~DCGVFVL~yAE~~SrG 463 (490)
T PLN03189 420 KDKSEKDI-DV-SSWEQ-E-FVEDLPEQKNGYDCGMFMIKYIDFYSRG 463 (490)
T ss_pred hhhcCCCc-ch-hccee-c-cCCCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 98877654 33 35742 1 246899999997 999999999988643
No 4
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification.; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....
Probab=99.94 E-value=3.1e-26 Score=221.26 Aligned_cols=164 Identities=32% Similarity=0.589 Sum_probs=121.1
Q ss_pred CCCcHHHHHHHHHHHHHhh--hhccCCcEEEechHHHHHhhccC----CCCCCc----chhhHHHHHHHhhhhcc---cc
Q 008357 381 TFVNDTIIDFYIKYLKNQI--QAEEKHRFHFFNSFFFRKLADLD----KDPSSI----SDGKAAFLRVRKWTRKV---DI 447 (568)
Q Consensus 381 ~WLND~IInFYl~yL~~~~--~~~~~~~v~~fnSfFy~kL~~~~----~~P~s~----s~~k~~y~~VkrWtkkv---dL 447 (568)
+||||+|||||++||.+++ ......++++|+|+|+++|...- +.+... ......+..+++|++.. ++
T Consensus 1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (216)
T PF02902_consen 1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL 80 (216)
T ss_dssp --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence 6999999999999998654 34557899999999999998221 111000 00134678899999887 99
Q ss_pred cccceEEEeecc-CcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCCh-----hHHHHHHHHHHHHHHhhcC
Q 008357 448 FGKDYIFIPVNF-NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHA-----GLKNLVQSYLCEEWKERHK 521 (568)
Q Consensus 448 fekd~IfIPIN~-~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~-----~i~~~L~~yL~~E~k~K~~ 521 (568)
+++++||||||. +.||+|+||+.|. .+|++||||++.+. ..+..+..||..++....+
T Consensus 81 ~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (216)
T PF02902_consen 81 FDKDYIFIPININNNHWVLLVIDLPK----------------KRIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEG 144 (216)
T ss_dssp GGSSEEEEEEEETTTEEEEEEEETTT----------------TEEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEEEechhhccceeEEcccc----------------cEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 999999999999 9999999999874 59999999999876 5677888899888866554
Q ss_pred CCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhhh
Q 008357 522 DTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLKL 564 (568)
Q Consensus 522 ~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k~ 564 (568)
... + .+.|. ...+.++|||.|++ ||+|+|.||++++...
T Consensus 145 ~~~-~-~~~~~--~~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~ 184 (216)
T PF02902_consen 145 RDP-D-KSPFK--IVRPPNVPQQPNGYDCGVYVLKFMECLLEGP 184 (216)
T ss_dssp SCT---TTTCE--EEEECTS-SSSSSSCHHHHHHHHHHHHHCTH
T ss_pred ccc-c-cceee--ecccccccCCCCCCCcHHHHHHHHHHHHhCC
Confidence 422 1 12343 23456899999996 9999999999997653
No 5
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]
Probab=99.88 E-value=1.4e-22 Score=197.22 Aligned_cols=154 Identities=28% Similarity=0.482 Sum_probs=118.0
Q ss_pred ceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhhcc
Q 008357 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKV 445 (568)
Q Consensus 366 ~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkkv 445 (568)
.+.|+++|+..|++..||||.+|+||.+||.+...... ...|+++|-.-..|.... +| +.++......
T Consensus 16 dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s~-~~~~ll~P~~t~~l~~~~-~~----------~e~~~~~~pl 83 (223)
T KOG3246|consen 16 DVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRSE-PDLHLLRPSLTFFLRHAP-NP----------EEIAMVLDPL 83 (223)
T ss_pred ehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhcccC-cchhccCHHHHHHHHhCC-Cc----------HHHHHhcChh
Confidence 57999999999999999999999999999998755432 337899986666665431 12 2355556678
Q ss_pred cccccceEEEeeccC---------cceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChh----HHHHHHHHH
Q 008357 446 DIFGKDYIFIPVNFN---------LHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAG----LKNLVQSYL 512 (568)
Q Consensus 446 dLfekd~IfIPIN~~---------~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~----i~~~L~~yL 512 (568)
++++|++||+|||++ .||+|+|+..|. ..++||||+.+.|.. +.+.++.+|
T Consensus 84 ~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~----------------~~f~hyDS~~n~nt~~a~~l~~kl~~ll 147 (223)
T KOG3246|consen 84 DLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPD----------------GKFYHYDSLSNGNTKDAKSLMKKLRALL 147 (223)
T ss_pred hcCCCceEEEEecCCCcccccCCCcceEEEEEEeeC----------------CcEEEeecccCCCcHHHHHHHHHHHHHH
Confidence 999999999999984 599999999875 489999999998864 444455554
Q ss_pred HHHHHhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhhh
Q 008357 513 CEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLKL 564 (568)
Q Consensus 513 ~~E~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k~ 564 (568)
.. + +. ...+..+|||.||| ||++|+.|.++....|
T Consensus 148 ~~----~-----------~~--~~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~ 183 (223)
T KOG3246|consen 148 KK----K-----------FA--KRVECKCLQQQNGYDCGLHVCCNTRVLAERL 183 (223)
T ss_pred hh----h-----------hh--hcccccChhhhcCCchhHHHHHHHHHHHHHH
Confidence 32 1 11 11267899999997 9999999999877654
No 6
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.5e-16 Score=172.06 Aligned_cols=186 Identities=24% Similarity=0.423 Sum_probs=128.6
Q ss_pred ceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhh--hccCCcEEEechHHHHHhhccCCCCCCcch--hhHHHHHHHhh
Q 008357 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQ--AEEKHRFHFFNSFFFRKLADLDKDPSSISD--GKAAFLRVRKW 441 (568)
Q Consensus 366 ~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~--~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~--~k~~y~~VkrW 441 (568)
.+.++..|+.||.++.+|||.|++||++|+..... ......+|+|++|||.++..... .+..+ ......++++|
T Consensus 352 ~~~v~~~Dl~cl~~~e~L~d~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~--~~~~d~~~~~~~~~~~~~ 429 (595)
T KOG0779|consen 352 SHQVNNNDLVCLEEGEFLNDTIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLR--QKSNDQIQDNRAVRLRTW 429 (595)
T ss_pred ccceeccchhhccccchhhhhhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhh--hhhhhhhhccccCceeee
Confidence 66899999999999999999999999999987643 44568999999999999986431 11111 23456789999
Q ss_pred hhcccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCCh-hHHHHHHHHHHHHHHhhc
Q 008357 442 TRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHA-GLKNLVQSYLCEEWKERH 520 (568)
Q Consensus 442 tkkvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~-~i~~~L~~yL~~E~k~K~ 520 (568)
++.+++|.++||++|+|...||.|++||+|+... .......+++++..... ...+.+..+|..++....
T Consensus 430 ~~~~d~~~k~yi~~P~~E~~hw~laiic~p~~e~----------es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (595)
T KOG0779|consen 430 TRHFDLFNKDYVFVPTHERFHWKLAIICNPDLET----------ETPRPRLELLILKLSADFPIVENILDFMKVASIYNN 499 (595)
T ss_pred eeccccccceeEEecCchHhhhhccccccCcccc----------CccccchhhhhhccccccchhhhhhhhhhhcccccC
Confidence 9999999999999999999999999999997421 12233455555554332 234445566665554332
Q ss_pred CC-CCccccccccc---cc---cccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 521 KD-TSEDVSSKFLN---FR---FIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 521 ~~-~~~di~s~w~n---~~---~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
.. ...+.+-.|.- .+ ...+.-|||.|.. ||+|++.|++-|+..
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~s~~v~~p~q~n~~dcG~~~~~~v~~f~e~ 550 (595)
T KOG0779|consen 500 ELIVTEDLELEEELPRRLPRGKSETVREPQQNNDVDCGSFVLEFVERFIED 550 (595)
T ss_pred cccccccccccccccccCcccccccccccCccCcccchhhHHHHHHHhhhC
Confidence 21 01122112211 01 1112238999965 999999999988753
No 7
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].
Probab=95.55 E-value=0.032 Score=59.91 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=59.9
Q ss_pred cccceEEEeeccCcceEEEEEecCCCcccchhh---hhccCCCCCEEEEEeCCCCCC--h----------hHHHHHHHHH
Q 008357 448 FGKDYIFIPVNFNLHWSLIVICHPGDVASFKVE---DLKRSEKVPCILHMDSIKGTH--A----------GLKNLVQSYL 512 (568)
Q Consensus 448 fekd~IfIPIN~~~HWsLvVI~~P~~~~~~~de---d~~~~~k~~~I~~lDSL~~s~--~----------~i~~~L~~yL 512 (568)
-++.|+.+|++...||..+|++-...++.+-|. ...+=.+.+..++|+.-.|-+ . .-++.|.+|+
T Consensus 229 ~~~RyvmFgfcY~~Hwkc~IfDk~~~~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~n~dIDVLfrfF 308 (423)
T PF03290_consen 229 SKKRYVMFGFCYMSHWKCCIFDKEKKIVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNENCDIDVLFRFF 308 (423)
T ss_pred ccccEEEeeeeehhcceEEEEeccccEEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccccCchHHHHHHH
Confidence 458999999999999999999854332222110 000001233344444332211 0 1367889999
Q ss_pred HHHHHhhcCCCCccccccccccccccCCCCCcCCCCchhhHHHHHHHHHh
Q 008357 513 CEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPL 562 (568)
Q Consensus 513 ~~E~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~CGvfVL~ym~~fl~ 562 (568)
...++++.+ .+.+++-|=.-+.||+|...||....+
T Consensus 309 ~d~f~~~~g--------------ciNvevnQl~eseCGMF~~iFm~~c~~ 344 (423)
T PF03290_consen 309 EDSFGVKYG--------------CINVEVNQLLESECGMFISIFMILCTL 344 (423)
T ss_pred Hhhccccee--------------EEEhhhhhhcccccchHHHHHHHHHHc
Confidence 888766543 123344444445699999999987654
No 8
>PRK11836 deubiquitinase; Provisional
Probab=94.23 E-value=0.13 Score=53.72 Aligned_cols=107 Identities=17% Similarity=0.317 Sum_probs=58.1
Q ss_pred cccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCCh----hHHHHHHHH---HHHH-
Q 008357 444 KVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHA----GLKNLVQSY---LCEE- 515 (568)
Q Consensus 444 kvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~----~i~~~L~~y---L~~E- 515 (568)
...+|-+++=++|||.+.||.|++..- +++.+ +...+.+| ++|.|+..-+. ....++..| |..|
T Consensus 213 ~~~~~~k~~elFpINtg~HWil~~l~K---i~~~~----~~~ekiKC-~IFNs~~~l~~d~~~t~q~ii~a~~~~~~~~~ 284 (403)
T PRK11836 213 SDPSWPKEVQLFPINTGGHWILVSLQK---IVNEK----NNTQQIKC-VIFNSLRALGHDKENSLKRVINSFNSELMGEM 284 (403)
T ss_pred cCCCCcccceEEEecCCCcEEEEEeHH---hhhcc----cccceeEE-EEEecHhhhccchhhHHHHHHHhhhhhhhhhc
Confidence 556788999999999999999999852 11111 11123344 56788865332 122222222 2211
Q ss_pred HHhhcCCCCccccccccccccccCCCCCcCCCCchhhHHHHHHHHHhh
Q 008357 516 WKERHKDTSEDVSSKFLNFRFIPLEVLKLILHFWGSLKWGYKMEFPLK 563 (568)
Q Consensus 516 ~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~CGvfVL~ym~~fl~k 563 (568)
..++.+.. +.+ ..+-|+..++-||-..-||.|+.+-+++.+-.
T Consensus 285 ~~~~ik~~---~~e--~ei~fie~dLQq~vpngCGlFv~~a~Qe~i~q 327 (403)
T PRK11836 285 SNNNIKVH---LTE--PEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQ 327 (403)
T ss_pred chhhhccc---ccC--CceEEEechhhhcCCCccceehHHHHHHHHHH
Confidence 22222221 111 12335555554444445999999888876654
No 9
>PRK14848 deubiquitinase SseL; Provisional
Probab=90.98 E-value=0.37 Score=49.51 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=44.6
Q ss_pred cceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCCccccc
Q 008357 450 KDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSS 529 (568)
Q Consensus 450 kd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~~di~s 529 (568)
++.=++|||.+.||.|++..-- + .+.+| ++|.|+..-+...++.++. ...+.+. ..
T Consensus 188 ~~nevF~INtg~HWil~~~~Ki---~----------~kiKC-~iFNs~~~l~eNs~~~ii~-----~ak~ag~-----~~ 243 (317)
T PRK14848 188 SHNEVFLINTGDHWLLCLFYKL---A----------EKIKC-LIFNTYYDLNENTKQEIIE-----AAKIAGI-----SE 243 (317)
T ss_pred CcceEEEecCCCcEEEEEhHHh---h----------hhceE-EEeecHhhhhhhHHHHHHH-----HHHhhCc-----cc
Confidence 3444599999999999998521 1 13345 4578876644332222221 1112111 10
Q ss_pred cccccccccCCCCCcCCCCchhhHHHHHH
Q 008357 530 KFLNFRFIPLEVLKLILHFWGSLKWGYKM 558 (568)
Q Consensus 530 ~w~n~~~v~~~vPQQ~Ng~CGvfVL~ym~ 558 (568)
+ ..+-|+..++-||-..-||.|++.+++
T Consensus 244 e-~di~fIe~nLQqnVpngCGlFv~~aIq 271 (317)
T PRK14848 244 N-EDVNFIETNLQNNVPNGCGLFCYHTIQ 271 (317)
T ss_pred C-CceEEeehhhhhhCCCcchHHHHHHHH
Confidence 0 012345555533333349999998876
No 10
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=80.31 E-value=0.61 Score=53.58 Aligned_cols=246 Identities=16% Similarity=0.078 Sum_probs=133.6
Q ss_pred eecCceEEeccCCcCcccceeeecccchhhhhhhhhhcccccEEEEEEeeeccccccCCC---------------CCCCC
Q 008357 233 FSCTGIKIKDSNACGVQESFTFEKGIDDIVDIKFQWLQRFGSVEVKLHVILNDVAQDDNA---------------CGTSG 297 (568)
Q Consensus 233 fS~~~iki~~~t~~~~~~~f~~Ew~iddiv~i~~~~~~~~~t~~V~l~~~s~~~~~~~~~---------------~~~~~ 297 (568)
+.+++.++..-+.......+.+.-..+.|+-+..- -..+..-++...++++......-. .-.+-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T KOG0779|consen 7 QLRSEVKSSSIMVESADVKELLIRRLEFVVLIKKS-RPNYLNDIIIDLVLLKDDNTLNDEYTRELSILFILAVKKGLTSL 85 (595)
T ss_pred ccccccccceeEeccCCCccceeeccccccccccC-CcccccccccchheeccccCCCccccceeeecccCCcccccccc
Confidence 44455555555555555555555666666655422 222334444444444433321111 01345
Q ss_pred ccceeeeecCCcchhhHHHHhhhhhhhhhhhccccCCCCCCCC--CCcccccCCCCCCCcceecCCCCCCceEEehhhhh
Q 008357 298 IEELKFSFSDCNWSEQLEKITSLNAKYLALWSVDHDNPVDMDG--VGQRRYFPNFDEPFEDVVYPEGDSDAVSISKRDID 375 (568)
Q Consensus 298 ~~~~k~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~d~~~~~--~~~r~~~p~~~e~~~~~~yp~~~~~~i~Lt~~Dl~ 375 (568)
...+|++++..+|.++....+ +..+++++.+-........+ +..+..++...+.|..+.||...+..+......+.
T Consensus 86 ~~~~ki~~~~~~~~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (595)
T KOG0779|consen 86 TEPLKIAVLEEQKPHAVVPKK--IISVSELRNTNLTEGTFYSDYLNRIKNIFESVRKFFNQVSYPKFMPNVTSFMPSPLE 163 (595)
T ss_pred ccccccccccccCCccccccc--cccchhccccCCcccceecccccccccccchhcchhhhcccccccchhhcccCCccc
Confidence 667788888888876666665 88889999887777655544 34445566666667888999998888888888888
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhhcccccccceEEE
Q 008357 376 LLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFI 455 (568)
Q Consensus 376 ~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkkvdLfekd~IfI 455 (568)
.++...--+..|.-.+..+....+.......+|++-..++-...- +|+...++....++++
T Consensus 164 ~~q~~~~~~~~i~i~~~~~~~~fi~~~~~~~~~~~~~~~~~~~~l-------------------~~~~~~~~~~~~~~~~ 224 (595)
T KOG0779|consen 164 KCQLQRVFTWTINITRKLFKKLFIKIFKNEPFHFKAVKFLLPSAL-------------------TKSDVCDIADLEVIFL 224 (595)
T ss_pred ccccccccceeeeeeecchhhhcccCcccCchhhhhhhcccchhc-------------------cchhhhhhhcccccch
Confidence 877655444443333333333322212234555555444433321 2222233445677888
Q ss_pred eeccCcceEEEEEecCCCccc-chhhhhccCCCCCEEEEEeCCCCC
Q 008357 456 PVNFNLHWSLIVICHPGDVAS-FKVEDLKRSEKVPCILHMDSIKGT 500 (568)
Q Consensus 456 PIN~~~HWsLvVI~~P~~~~~-~~ded~~~~~k~~~I~~lDSL~~s 500 (568)
+.....||.-...-++..... ...+-...+.+.....++.++.+.
T Consensus 225 ~~~k~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~~~~ 270 (595)
T KOG0779|consen 225 NSRKDSHSLVISSINSPNIKTFFSKEVKSRPTPASYFIFSSFLPGL 270 (595)
T ss_pred hcccchhhhhhcccccccchhhhccccccCCCcccccccccccCCC
Confidence 888887743333222321111 111111223455567777777654
No 11
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=33.73 E-value=1.4e+02 Score=29.56 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=35.1
Q ss_pred CcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCCcccccccc-ccc-cc
Q 008357 460 NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL-NFR-FI 537 (568)
Q Consensus 460 ~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~-n~~-~v 537 (568)
+.||.-...+ |. ...++.||.+|-+..++.++ .+-+|+.-.+.. .+.+.-. -+. ++
T Consensus 33 GvHWlA~Aw~-P~---------------s~t~YmFDPfGfsd~~L~qi----Y~FeYe~llrRS--AL~~~~dRCv~Lvk 90 (183)
T PF00770_consen 33 GVHWLAFAWD-PR---------------SRTFYMFDPFGFSDQKLKQI----YQFEYEGLLRRS--ALSSTPDRCVTLVK 90 (183)
T ss_dssp -S-EEEEEEE-TT---------------TTEEEEE-TT---HHHHHHH----H----HHHHHHH--HHHH-TTSEEEEEE
T ss_pred ceeEEEEEec-CC---------------cceEEEeCCCCCCHHHHHHH----HhhhHHHHHHHH--hhcCCCCceEEEEe
Confidence 5899776665 53 36899999999988775442 223332211110 0110000 011 11
Q ss_pred cCCCCCcCCCC-chhhHHHHHHHHHh
Q 008357 538 PLEVLKLILHF-WGSLKWGYKMEFPL 562 (568)
Q Consensus 538 ~~~vPQQ~Ng~-CGvfVL~ym~~fl~ 562 (568)
..+.-|=.++- ||.|-+.|+..|..
T Consensus 91 stqtVQ~p~SaaCGLFC~lFL~aF~~ 116 (183)
T PF00770_consen 91 STQTVQCPCSAACGLFCCLFLHAFVH 116 (183)
T ss_dssp E-EE-S-TT---HHHHHHHHHHHHHH
T ss_pred ccceeeccCchhHHHHHHHHHHHHHh
Confidence 22233333554 99999999888753
No 12
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=30.87 E-value=2.4e+02 Score=27.73 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=36.3
Q ss_pred CCCEEEEEeCCCCCChhHHHHHHHHHHH--HHHhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHH
Q 008357 487 KVPCILHMDSIKGTHAGLKNLVQSYLCE--EWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEF 560 (568)
Q Consensus 487 k~~~I~~lDSL~~s~~~i~~~L~~yL~~--E~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~f 560 (568)
.++.|++|+|-.-.+.... |..+... +...+.+. +.++..+++.-|+... ||+|-|.|....
T Consensus 96 ~k~SlI~~Epa~~~~~~~~--l~~~~~~~~~~~~~~~~----------~~~~~~ie~diQkS~~dC~IFsLs~AkK~ 160 (177)
T PF03421_consen 96 GKPSLIVFEPASFYGMKPA--LAGYTKLAEEARQKLLP----------NAKFAVIEMDIQKSPSDCGIFSLSLAKKM 160 (177)
T ss_pred CCceEEEEccccccCCcch--hhhHHHHHHHHHhccCC----------CcEEEEEecccccCcCcchhhHHHHHHHH
Confidence 4689999999865442211 2222221 22221111 1245567889999865 999999986543
No 13
>PHA02130 hypothetical protein
Probab=25.75 E-value=38 Score=28.38 Aligned_cols=37 Identities=22% Similarity=0.549 Sum_probs=31.9
Q ss_pred HHHHHHHhhhh-cccccccceEEEeeccCcceEEEEEe
Q 008357 433 AAFLRVRKWTR-KVDIFGKDYIFIPVNFNLHWSLIVIC 469 (568)
Q Consensus 433 ~~y~~VkrWtk-kvdLfekd~IfIPIN~~~HWsLvVI~ 469 (568)
+.++.++.|+. +.+-++-|++=||.-...||-|+-..
T Consensus 14 ks~~sl~~wl~~~~dswdddil~ipfkstv~w~lcp~~ 51 (81)
T PHA02130 14 KSWESLREWLDERFDSWDDDILSIPFKSTVYWDLCPYA 51 (81)
T ss_pred HHHHHHHHHHHhcccccccchhcccccceeeeccCcch
Confidence 56788999984 68899999999999999999998654
Done!