Query 008357
Match_columns 568
No_of_seqs 188 out of 853
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 7.2E-43 2.5E-47 361.4 19.0 206 355-564 20-280 (323)
2 2xph_A Sentrin-specific protea 100.0 1.1E-37 3.7E-42 310.0 16.1 191 343-563 10-211 (238)
3 1th0_A SMT3-, sentrin-specific 100.0 7.3E-37 2.5E-41 301.6 18.3 169 365-563 30-199 (226)
4 2bkr_A Sentrin-specific protea 100.0 8.5E-34 2.9E-38 276.8 19.1 158 366-564 10-178 (212)
5 1euv_A ULP1 protease; SUMO hyd 100.0 5.7E-34 2E-38 280.3 15.8 157 364-563 30-194 (221)
6 2oix_A Xanthomonas outer prote 100.0 1.4E-28 4.8E-33 236.6 16.5 148 379-564 1-151 (186)
7 4ekf_A Adenain; alpha and beta 50.5 38 0.0013 32.5 7.3 81 460-562 52-135 (204)
8 2lic_A Vitellogenin; lipid tra 6.3 2.7E+02 0.0091 19.0 1.9 14 175-188 15-28 (35)
9 2cxa_A Leucyl/phenylalanyl-tRN 5.9 2.6E+02 0.0088 27.9 2.3 20 378-397 124-143 (256)
10 2po8_A Mcoti-II; oxidative fol 5.0 1.4E+02 0.0048 20.8 -0.2 12 540-551 17-28 (34)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.2e-43 Score=361.40 Aligned_cols=206 Identities=35% Similarity=0.567 Sum_probs=161.9
Q ss_pred cceecCCC-CCCceEEehhhhhccCCCCCCcHHHHHHHHHHHHH-hhhhccCCcEEEechHHHHHhhccCCC-----CCC
Q 008357 355 EDVVYPEG-DSDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKN-QIQAEEKHRFHFFNSFFFRKLADLDKD-----PSS 427 (568)
Q Consensus 355 ~~~~yp~~-~~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~-~~~~~~~~~v~~fnSfFy~kL~~~~~~-----P~s 427 (568)
..++||++ +.+++.|+++|+.||.+++||||+|||||++||.. +.....+.++|+||||||++|....+. | .
T Consensus 20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~-~ 98 (323)
T 3eay_A 20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNP-N 98 (323)
T ss_dssp EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCHHHHHTEEECCTHHHHHHSCC--------C-C
T ss_pred eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccccccCcEEEEchHHHHHHHhcccccccccc-c
Confidence 44889987 67999999999999999999999999999999964 344444579999999999999864321 1 1
Q ss_pred cchhhHHHHHHHhhhhcccccccceEEEeeccCcceEEEEEecCCCcccch-----------------------hhh---
Q 008357 428 ISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFK-----------------------VED--- 481 (568)
Q Consensus 428 ~s~~k~~y~~VkrWtkkvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~-----------------------ded--- 481 (568)
.+..+.+|.+|+||||+++||++|+||||||.+.||+|+|||+|+....+. |++
T Consensus 99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 178 (323)
T 3eay_A 99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRT 178 (323)
T ss_dssp SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC----------------------------
T ss_pred chhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccccccc
Confidence 223457899999999999999999999999999999999999997521100 000
Q ss_pred --------------------hccCCCCCEEEEEeCCCCCC-hhHHHHHHHHHHHHHHhhcCCCCccccccccccccccCC
Q 008357 482 --------------------LKRSEKVPCILHMDSIKGTH-AGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLE 540 (568)
Q Consensus 482 --------------------~~~~~k~~~I~~lDSL~~s~-~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~n~~~v~~~ 540 (568)
..+..+.|||+|||||++.+ .++...|++||..||+.|++... ++. .| .++....+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~~-~f~-~~-~~~~~~~~ 255 (323)
T 3eay_A 179 TSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHR-QFS-KT-NMVDLCPK 255 (323)
T ss_dssp ---------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSCC-CCC-TT-TSCEECCB
T ss_pred ccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCCc-CCC-Hh-HceeccCC
Confidence 01234789999999999864 77999999999999999876432 221 12 24445568
Q ss_pred CCCcCCCC-chhhHHHHHHHHHhhh
Q 008357 541 VLKLILHF-WGSLKWGYKMEFPLKL 564 (568)
Q Consensus 541 vPQQ~Ng~-CGvfVL~ym~~fl~k~ 564 (568)
+|||.|++ ||+|||.||++|....
T Consensus 256 ~P~Q~N~~DCGvfvl~~~e~~~~~~ 280 (323)
T 3eay_A 256 VPKQDNSSDCGVYLLQYVESFFKDP 280 (323)
T ss_dssp CCCCCSTTCHHHHHHHHHHHHHHSC
T ss_pred CCCcCCCCcHHHHHHHHHHHHHhCC
Confidence 99999997 9999999999998765
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1.1e-37 Score=309.97 Aligned_cols=191 Identities=26% Similarity=0.502 Sum_probs=157.1
Q ss_pred cccccCCCCCCCccee---cCCCC-------CCceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEech
Q 008357 343 QRRYFPNFDEPFEDVV---YPEGD-------SDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNS 412 (568)
Q Consensus 343 ~r~~~p~~~e~~~~~~---yp~~~-------~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnS 412 (568)
.++.||.++++++..+ +..++ ..++.|+++|+.+|.+++||||+|||||++||.++......+++|+|+|
T Consensus 10 ~~~~~~~lt~e~~~~v~~~l~~~~~~~vl~~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s 89 (238)
T 2xph_A 10 SEDEFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNT 89 (238)
T ss_dssp --CCCCCCCHHHHHHHHHHSSSSCTTCCCEEETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTSTTSCCEEECCT
T ss_pred cccCCCCCCHHHHHHHHHHHcCCChhheeecCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhcCCCceeeeec
Confidence 4456777766654432 22221 2378999999999999999999999999999998765445678999999
Q ss_pred HHHHHhhccCCCCCCcchhhHHHHHHHhhhhcccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEE
Q 008357 413 FFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCIL 492 (568)
Q Consensus 413 fFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkkvdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~ 492 (568)
|||++|.. .+|.+|++|+++++||++++||||||.+.||+|+||+.+. ++|+
T Consensus 90 ff~~~l~~------------~~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~----------------~~i~ 141 (238)
T 2xph_A 90 FFFTKLKT------------AGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRK----------------KNIT 141 (238)
T ss_dssp TTTHHHHT------------TCHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEE
T ss_pred HHHHHhhh------------cccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEccc----------------ceEE
Confidence 99999985 3588999999999999999999999999999999999764 6999
Q ss_pred EEeCCCCCChhHHHHHHHHHHHHHHhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 493 HMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 493 ~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
|||||++.+......|++||..+++.|.+... + .+.|........++|||.||+ ||+|||.||+++...
T Consensus 142 ~~DSl~~~~~~~~~~l~~~L~~e~~~k~~~~~-~-~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~ 211 (238)
T 2xph_A 142 YYDSMGGINNEACRILLQYLKQESIDKKRKEF-D-TNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKD 211 (238)
T ss_dssp EECTTCCCCHHHHHHHHHHHHHHHHHHHCSCC-C-CTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTT
T ss_pred EeecccCCCHHHHHHHHHHHHHHHHHhcCCCc-C-cccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999888888899999999998876543 2 235753334568999999997 999999999998754
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=7.3e-37 Score=301.59 Aligned_cols=169 Identities=24% Similarity=0.492 Sum_probs=147.1
Q ss_pred CceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhhc
Q 008357 365 DAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRK 444 (568)
Q Consensus 365 ~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkk 444 (568)
.++.|+++|+.+|.+++||||+|||||++||.++......+++|+||||||++|.. .+|.+|+||+++
T Consensus 30 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~f~s~f~~~l~~------------~~~~~v~~w~~~ 97 (226)
T 1th0_A 30 FKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPALHVFSTFFYPKLKS------------GGYQAVKRWTKG 97 (226)
T ss_dssp TTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHTCCCEEECCTTHHHHHHH------------HTGGGTGGGGTT
T ss_pred CCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhccCCcEEEEeHHHHHHhhh------------cccHHHHHHhhc
Confidence 36899999999999999999999999999998876555568999999999999975 357889999999
Q ss_pred ccccccceEEEeeccCcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCC
Q 008357 445 VDIFGKDYIFIPVNFNLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTS 524 (568)
Q Consensus 445 vdLfekd~IfIPIN~~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~ 524 (568)
+++|++++||||||.+.||+|+||+.+. ++|+|||||++.+..+.+.|++||..+++.|.+..+
T Consensus 98 ~~l~~~~~i~iPin~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~l~~~l~~e~~~k~~~~~ 161 (226)
T 1th0_A 98 VNLFEQEIILVPIHRKVHWSLVVIDLRK----------------KCLKYLDSMGQKGHRICEILLQYLQDESKTKRNSDL 161 (226)
T ss_dssp CCGGGSSEEEEEEEETTEEEEEEEETTT----------------TEEEEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCcccCCEEEEeEEeCcEEEEEEEEcCC----------------CceEEEcCCCCCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999753 799999999999888889999999999988876543
Q ss_pred ccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 525 EDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 525 ~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
+ .++|....+.+.++|||.||+ ||+|||.||+++...
T Consensus 162 -~-~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~ 199 (226)
T 1th0_A 162 -N-LLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRD 199 (226)
T ss_dssp -C-GGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTT
T ss_pred -C-cccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCC
Confidence 2 235753333467999999997 999999999998754
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=8.5e-34 Score=276.78 Aligned_cols=158 Identities=19% Similarity=0.305 Sum_probs=130.8
Q ss_pred ceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEec---hHHHHHhhccCCCCCCcchhhHHHHHHHhhh
Q 008357 366 AVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFN---SFFFRKLADLDKDPSSISDGKAAFLRVRKWT 442 (568)
Q Consensus 366 ~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fn---SfFy~kL~~~~~~P~s~s~~k~~y~~VkrWt 442 (568)
++.|+++|+.+|.+++||||+|||||++||.++..+...+++|+|+ ||||..+. .|.+|++|+
T Consensus 10 ~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~~~~~~~~~p~~s~f~~~~~--------------~~~~v~~~~ 75 (212)
T 2bkr_A 10 DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKCTS--------------NPAEIAMFL 75 (212)
T ss_dssp TEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGGTTTEEEECHHHHHHHHHCC--------------CHHHHHHHH
T ss_pred CEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCCCCcEEEEChHHHHHHHhCC--------------CHHHHHHHh
Confidence 6899999999999999999999999999999987655568899999 89995542 256899999
Q ss_pred hcccccccceEEEeecc-------CcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHH
Q 008357 443 RKVDIFGKDYIFIPVNF-------NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEE 515 (568)
Q Consensus 443 kkvdLfekd~IfIPIN~-------~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E 515 (568)
+++++|++++||||||. +.||+|+||+.+. ++|+|||||++.+......+..+|...
T Consensus 76 ~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~----------------~~i~~~DSl~~~n~~~~~~l~~~l~~~ 139 (212)
T 2bkr_A 76 EPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDK----------------NSFFHYDSHSRSNSVHAKQVAEKLEAF 139 (212)
T ss_dssp GGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGG----------------TEEEEECSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecC----------------CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999995 7999999999864 699999999998865544455555544
Q ss_pred HHhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhhh
Q 008357 516 WKERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLKL 564 (568)
Q Consensus 516 ~k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k~ 564 (568)
.+.+.. +| .+.+.++|||.||+ ||+|||.||++++..+
T Consensus 140 l~~~~~--------~~---~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~ 178 (212)
T 2bkr_A 140 LGRKGD--------KL---AFVEEKAPAQQNSYDCGMYVICNTEALCQNF 178 (212)
T ss_dssp HSCTTC--------CC---CEEECCCCCCSSSSTHHHHHHHHHHHHHHHH
T ss_pred hCCccc--------cc---eEeECCCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 432211 12 24567899999997 9999999999998876
No 5
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=5.7e-34 Score=280.26 Aligned_cols=157 Identities=31% Similarity=0.508 Sum_probs=134.0
Q ss_pred CCceEEehhhhhccCCCCCCcHHHHHHHHHHHHHhhhhccCCcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhh
Q 008357 364 SDAVSISKRDIDLLQPDTFVNDTIIDFYIKYLKNQIQAEEKHRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTR 443 (568)
Q Consensus 364 ~~~i~Lt~~Dl~~L~p~~WLND~IInFYl~yL~~~~~~~~~~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtk 443 (568)
..++.|+++|+.+|.+++||||+|||||++||.++ .+++|+|+||||++|.. .+|.+|+||++
T Consensus 30 ~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~-----~~~~~~f~s~f~~~l~~------------~~~~~v~rw~~ 92 (221)
T 1euv_A 30 RDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS-----TPNTVAFNSFFYTNLSE------------RGYQGVRRWMK 92 (221)
T ss_dssp ETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHH-----STTEEECCTHHHHHHHH------------HTGGGTTTTTG
T ss_pred CCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhc-----CCCeEEEEcHHHHHhhh------------hccHHHHHHHH
Confidence 34799999999999999999999999999999865 35899999999999975 46888999997
Q ss_pred --cccccccceEEEeeccC-cceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCC-Ch---hHHHHHHHHHHHHH
Q 008357 444 --KVDIFGKDYIFIPVNFN-LHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGT-HA---GLKNLVQSYLCEEW 516 (568)
Q Consensus 444 --kvdLfekd~IfIPIN~~-~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s-~~---~i~~~L~~yL~~E~ 516 (568)
++++|++++||||||.+ .||+|+||+.+. ++|+|||||++. +. ++.+.|+.||..++
T Consensus 93 ~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~----------------~~i~~~DSl~~~~~~~~~~i~~~l~~~l~~e~ 156 (221)
T 1euv_A 93 RKKTQIDKLDKIFTPINLNQSHWALGIIDLKK----------------KTIGYVDSLSNGPNAMSFAILTDLQKYVMEES 156 (221)
T ss_dssp GGTSCGGGCSEEEEEEEETTTEEEEEEEETTT----------------TEEEEECSSCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred hccCCcccCCEEEEEEEcCCCeEEEEEEEcCC----------------CEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Confidence 67999999999999984 999999999864 699999999864 32 46778899999888
Q ss_pred HhhcCCCCccccccccccccccCCCCCcCCCC-chhhHHHHHHHHHhh
Q 008357 517 KERHKDTSEDVSSKFLNFRFIPLEVLKLILHF-WGSLKWGYKMEFPLK 563 (568)
Q Consensus 517 k~K~~~~~~di~s~w~n~~~v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k 563 (568)
+.+.+. .| ++...++|||.||+ ||+|||.||+++...
T Consensus 157 ~~~~~~-------~~---~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~ 194 (221)
T 1euv_A 157 KHTIGE-------DF---DLIHLDCPQQPNGYDCGIYVCMNTLYGSAD 194 (221)
T ss_dssp TSSSCT-------TC---EEEEECCCCCSSSSTHHHHHHHHHHHHHTT
T ss_pred HHhcCC-------Cc---eEeecCCCCCCCCcCHHHHHHHHHHHHhCC
Confidence 765432 24 34567999999997 999999999988754
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.96 E-value=1.4e-28 Score=236.55 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=107.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhhhhccC-CcEEEechHHHHHhhccCCCCCCcchhhHHHHHHHhhhhcccccccceEEEee
Q 008357 379 PDTFVNDTIIDFYIKYLKNQIQAEEK-HRFHFFNSFFFRKLADLDKDPSSISDGKAAFLRVRKWTRKVDIFGKDYIFIPV 457 (568)
Q Consensus 379 p~~WLND~IInFYl~yL~~~~~~~~~-~~v~~fnSfFy~kL~~~~~~P~s~s~~k~~y~~VkrWtkkvdLfekd~IfIPI 457 (568)
+++||||+|||||++||.++...... .++|||+|+++..+...+ ...+.++++|++..++ +++|||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~---------~~~~~~~~~~~~~~~~--~~~i~iPi 69 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEPNAHLLHFADSQVVTMLSSAD---------PDQQARAQRLLAGDDI--PPIVFLPI 69 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTSTTGGGEEECCHHHHHHTTCSS---------HHHHHHHHHHHHSTTS--CSEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhccCcceEEEECHHHHHHHHhCC---------HHHHHHHHHHcccccc--cCEEEEEE
Confidence 37899999999999999998754333 459999998877665421 2457788888877666 99999999
Q ss_pred cc-CcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCCcccccccccccc
Q 008357 458 NF-NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFLNFRF 536 (568)
Q Consensus 458 N~-~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~n~~~ 536 (568)
|. +.||+|+||+.+.+ .-++|+|||||++.+.. ...+...|.... +.. +. ++
T Consensus 70 n~~~~HWsLlvi~~~~~-------------~~~~~~~~DSl~~~~~~-~~~l~~~l~~~l----~~~-------~~--~~ 122 (186)
T 2oix_A 70 NQPNAHWSLLVVDRRNK-------------DAVAAYHYDSMAQKDPQ-QRYLADMAAYHL----GLD-------YQ--QT 122 (186)
T ss_dssp EETTTEEEEEEEECSST-------------TSCEEEEECCCSSCCHH-HHHHHHHHHHHT----TCC-------GG--GC
T ss_pred eCCCCccEEEEEECCCC-------------eeeeeEEEcCCCCCCHH-HHHHHHHHHHHh----CCC-------cc--cc
Confidence 98 89999999998764 23677999999997643 222223332211 111 11 23
Q ss_pred ccCCCCCcCCCC-chhhHHHHHHHHHhhh
Q 008357 537 IPLEVLKLILHF-WGSLKWGYKMEFPLKL 564 (568)
Q Consensus 537 v~~~vPQQ~Ng~-CGvfVL~ym~~fl~k~ 564 (568)
...++|||.||+ ||+|||.|++++...+
T Consensus 123 ~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~ 151 (186)
T 2oix_A 123 HEMPIAIQSDGYSAGDHVLTGIEVLAHRV 151 (186)
T ss_dssp EEECBCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999997 9999999999998765
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=50.52 E-value=38 Score=32.54 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=45.6
Q ss_pred CcceEEEEEecCCCcccchhhhhccCCCCCEEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCCCCcccccccc-ccc-cc
Q 008357 460 NLHWSLIVICHPGDVASFKVEDLKRSEKVPCILHMDSIKGTHAGLKNLVQSYLCEEWKERHKDTSEDVSSKFL-NFR-FI 537 (568)
Q Consensus 460 ~~HWsLvVI~~P~~~~~~~ded~~~~~k~~~I~~lDSL~~s~~~i~~~L~~yL~~E~k~K~~~~~~di~s~w~-n~~-~v 537 (568)
+.||.-...+ |. ..+++.||.+|-+..++.+ +.+-+|..-.+.. .+.+.-+ -+. ++
T Consensus 52 GvHWiA~Aw~-P~---------------s~~~YmFDPfG~sd~~L~q----iY~F~Y~~llkRS--AL~sspdRCv~Lvk 109 (204)
T 4ekf_A 52 GVHWMAFAWN-PR---------------SKTCYLFEPFGFSDQRLKQ----VYQFEYESLLRRS--AIASSPDRCITLEK 109 (204)
T ss_dssp CCCEEEEEEE-TT---------------TTEEEEECTBTTCSHHHHH----HHHHHHHHHHHHH--CC--------EEEE
T ss_pred ceeEEEeEec-CC---------------cceEEEeCCCCCCHHHHHH----HhhhhHHHHHHHH--hhcCCCCceeEEEe
Confidence 5899777665 53 3689999999999877544 3333444322211 1111000 011 12
Q ss_pred cCCCCCcCCCC-chhhHHHHHHHHHh
Q 008357 538 PLEVLKLILHF-WGSLKWGYKMEFPL 562 (568)
Q Consensus 538 ~~~vPQQ~Ng~-CGvfVL~ym~~fl~ 562 (568)
..+.-|=.++- ||.|-+.|+..|..
T Consensus 110 stqsVQcp~SaACGLFC~lFL~aF~~ 135 (204)
T 4ekf_A 110 STQSVQGPNSAAAGLFCCMFLHAFAN 135 (204)
T ss_dssp CCSBCSCTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCcCchhHHHHHHHHHHHHHh
Confidence 23334444554 99999999988753
No 8
>2lic_A Vitellogenin; lipid transport; HET: SEP; NMR {Apis mellifera}
Probab=6.34 E-value=2.7e+02 Score=19.04 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCC
Q 008357 175 GSSSSPASDIAPNG 188 (568)
Q Consensus 175 ~~~~s~~s~~~~~~ 188 (568)
|.+||+.|.++||+
T Consensus 15 stssssissseend 28 (35)
T 2lic_A 15 STSSSSISSSEEND 28 (35)
T ss_dssp CSCSSCCSTTCSCS
T ss_pred cccccccccccccc
Confidence 34455566666663
No 9
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=5.92 E-value=2.6e+02 Score=27.92 Aligned_cols=20 Identities=10% Similarity=0.348 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHHHHH
Q 008357 378 QPDTFVNDTIIDFYIKYLKN 397 (568)
Q Consensus 378 ~p~~WLND~IInFYl~yL~~ 397 (568)
+++.||+++||+.|.++-..
T Consensus 124 ~~gTWI~~ei~~aY~~LH~~ 143 (256)
T 2cxa_A 124 EEGTWITRGVVEAYHRLHEL 143 (256)
T ss_dssp --CTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 57899999999999998654
No 10
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=5.01 E-value=1.4e+02 Score=20.79 Aligned_cols=12 Identities=17% Similarity=0.052 Sum_probs=7.8
Q ss_pred CCCCcCCCCchh
Q 008357 540 EVLKLILHFWGS 551 (568)
Q Consensus 540 ~vPQQ~Ng~CGv 551 (568)
.+-=|.|||||+
T Consensus 17 ~CiC~~~G~CG~ 28 (34)
T 2po8_A 17 ACICRGNGYCGS 28 (34)
T ss_dssp TEEECTTSBEEE
T ss_pred CCeEccCccccc
Confidence 334467888875
Done!