BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008358
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH VV +LL + G + NG+ LH AAR GH++VVK LL +
Sbjct: 4 TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
+ DK G+T LH+A + EVVKLLLEA A V DK G T LH+A R E+V L
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 297 LS 298
L
Sbjct: 121 LE 122
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 199
+G PLH+AA GH +V++LL+ ++ + TPL AA GH VV +LL + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVV-KLLLEAG 58
Query: 200 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 259
+ NG+ LH AAR GH++VVK LL + + DK G+T LH+A + EVV
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117
Query: 260 KLLLEADA 267
KLLLEA A
Sbjct: 118 KLLLEAGA 125
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 36/155 (23%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA+ G L VK +L +GA+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----------AGADVNA----------------------- 30
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
K+++G PLH+AA GH +V++LL+ ++ + TPL AA GH VV +LL
Sbjct: 31 -KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVV-KLL 87
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
+ G + NG+ LH AAR GH++VVK LL
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+T LH+A + EVVKLLLEA A V DK G T LH+A R E+V LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 303 NVNALTRDHKTALDIA 318
+VNA ++ +T L +A
Sbjct: 60 DVNAKDKNGRTPLHLA 75
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 55 KRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTE 113
K + +AG K GR T LHLAA+ G L VK +L G D
Sbjct: 19 KLLLEAGADVNAKDKNGR---TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 114 VAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 162
VV LL+ + K+++G PLH+AA GH +V++LL+
Sbjct: 76 ARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY--STKEG 133
T LH+A+ G L VK +L S N+S + +T + + E+ KY K
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
+ K + PLH AA GH +V++LL++ +P+L+ T G TPL AA GH V
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG---HTPLHIAAREGHVETV 129
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL K+ +++ G LH AA+ G V V + LL +D K G T LH+AV
Sbjct: 130 LALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAV 187
Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
+ ++VKLLL + P G T LH+A ++ + E+ LL
Sbjct: 188 HHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLL 232
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNE 193
+G+ PLHIAA Q + + LL Q G +NA TPL AA GH +V
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLL-------QYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
LLSK + +G LH A++GHV V L+ K + T + G T LH+A
Sbjct: 264 LLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHY 321
Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
+ ++VK LL+ A V K G + LH A ++ T+IVT LL + N ++ D T
Sbjct: 322 GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTT 379
Query: 314 ALDIAEGL 321
L IA+ L
Sbjct: 380 PLAIAKRL 387
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 10/247 (4%)
Query: 74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSG-AEFDTEVAEIRSSVVNELL-KYSTK 131
+ T LH AA+ G VK +L + + +G E V LL K +++
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 132 EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 191
+T+K GF PLH+AA G + ++LL+ D + G + TPL A + +V
Sbjct: 140 ACMTKK---GFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL + GG NG LH AA+Q V+V ++LL A +G T LH+A
Sbjct: 196 KLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAA 253
Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311
+ E+V LLL A L +K G T LH+ ++ V ++L V+A TR
Sbjct: 254 QEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVP-VADVLIKHGVMVDATTRMG 311
Query: 312 KTALDIA 318
T L +A
Sbjct: 312 YTPLHVA 318
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 76 TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
T LH+AA++ + + +L YG + E + +V LL L
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
N+SG PLH+ A +GH + VL+ H + TT TPL A+ G+ +V L
Sbjct: 274 --GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFL 330
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
L + ++ G + LH AA+QGH D+V LL K+ G T L +A +
Sbjct: 331 LQHQADVNAKTKL-GYSPLHQAAQQGHTDIVTLLL-KNGASPNEVSSDGTTPLAIAKRLG 388
Query: 255 SCEVVKLL--LEADAAIVMLPDK 275
V +L + + + V++ DK
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDK 411
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
G PLH AA GH IV++LL DP+ + G TPL AA GH +V LLSK
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLLSK- 92
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSC 256
G S+G+ LH+AA GH ++VK LLSK DP +D G+T L +A + +
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNE 149
Query: 257 EVVKLL 262
E+VKLL
Sbjct: 150 EIVKLL 155
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 236
L+ AA G+ V +LL ++G S S+G+ LH+AA GH ++VK LLSK DP
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA- 65
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
D G+T LH A + E+VKLLL + A D G T LH A EIV L
Sbjct: 66 --KDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 297 LSLPDTNVNALTRDHKTALDIA 318
LS + N D +T LD+A
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLA 143
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
K+ G PLH AA GH IV++LL DP+ + G TPL AA GH +V L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG---RTPLHYAAENGHKEIVKLL 122
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
LSK G S S+G+ L A G+ ++VK L
Sbjct: 123 LSK-GADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G+ V +L+ ++G + S S+G+ LH+AA++GH ++VK L+SK + +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G+T LH A K E+VKLL+ + A V D G T LH A ++ EIV L+S
Sbjct: 67 -DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VN D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ G PLH AA +GH IV++L+ ++ TPL AA GH +V L+SK
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
G + S+G+ LH+AA++GH ++VK L+SK + +D G+T L +A + + E
Sbjct: 93 -GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRTPLDLAREHGNEE 150
Query: 258 VVKLL 262
+VKLL
Sbjct: 151 IVKLL 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 126 LKYSTKEG--------------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 171
L Y+ KEG + K+ G PLH AA +GH IV++L+ ++
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
TPL AA GH +V L+SK G + S S+G+ L A G+ ++VK L
Sbjct: 101 -SDGRTPLHYAAKEGHKEIVKLLISK-GADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ G PLH+AA GH +V++LL DP+ + G TPL AA GH VV LL
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLL 90
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKG 253
S+ G S+GK LH AA GH +VVK LLS+ DP +D G+T L +A +
Sbjct: 91 SQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---TSDSDGRTPLDLAREH 146
Query: 254 QSCEVVKLL 262
+ EVVKLL
Sbjct: 147 GNEEVVKLL 155
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 236
L+ AA G+ V +LL ++G + S S+GK LH AA GH +VVK LLS+ DP A
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
+ +D G+T LH+A + EVVKLLL + A D G T LH+A E+V L
Sbjct: 66 KDSD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 297 LSLPDTNVNALTRDHKTALDIA 318
LS + N D +T LD+A
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLA 143
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
K+ G PLH+AA GH +V++LL DP+ + G TPL AA GH VV L
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG---KTPLHLAAENGHKEVVKLL 122
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
LS+ G S S+G+ L A G+ +VVK L
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
NG+ LH AAR GH++VVK LL + + DK G+T LH+A + EVVKLLLEA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELL 297
A V DK G T LH+A R E+V LL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH VV +LL + G + NG+ LH AAR GH++VVK LL +
Sbjct: 4 TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
+ DK G+T LH+A + EVVKLLLEA A
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 199
+G PLH+AA GH +V++LL+ ++ + TPL AA GH VV +LL + G
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVV-KLLLEAG 58
Query: 200 GLLEISRSNGKNALHFAARQGHVDVVKALL 229
+ NG+ LH AAR GH++VVK LL
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 35/120 (29%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA+ G L VK +L +GA+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLE----------AGADVNA----------------------- 30
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
K+++G PLH+AA GH +V++LL+ ++ + TPL AA GH VV LL
Sbjct: 31 -KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
G L+ AA G V L++ +G + +G LH AAR+GH+++V+ LL
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 69
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
+ + DK G T LH+A + E+V++LL+A A V DK G T LH+A R+ E
Sbjct: 70 GADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLE 127
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIA 318
IV E+L +VNA + KTA DI+
Sbjct: 128 IV-EVLLKAGADVNAQDKFGKTAFDIS 153
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K G + +G LH AAR+GH+++V+ LL + DK G+TA +++ +
Sbjct: 101 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
++ ++L
Sbjct: 160 DLAEIL 165
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 64/153 (41%), Gaps = 36/153 (23%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA+ G L E+ E+ LLK +
Sbjct: 49 TPLHLAAREGHL-------------------------EIVEV-------LLKAGAD--VN 74
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVL 132
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + GK A + G+ D+ + L
Sbjct: 133 LKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G+ V +L+ ++G + S S+G+ LH AA GH +VVK L+SK + +
Sbjct: 8 LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G+T LH A + EVVKLL+ + A V D G T LH A E+V L+S
Sbjct: 67 -DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VN D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
G PLH AA GH +V++L+ ++ TPL AA GH VV L+SK G
Sbjct: 37 GRTPLHHAAENGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISK-GA 94
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
+ S+G+ LH AA GH +VVK L+SK + +D G+T L +A + + EVVK
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVK 153
Query: 261 LL 262
LL
Sbjct: 154 LL 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K+ G PLH AA GH +V++L+ ++ TPL AA GH VV L+S
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLIS 124
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + S S+G+ L A G+ +VVK L
Sbjct: 125 K-GADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L K G + +G LH AAR+GH+++V+ LL +
Sbjct: 37 TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
+ DK G T LH+A + E+V++LL+A A V DKFG T +A R+ +I
Sbjct: 96 AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDI 149
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V L++ +G + +G LH AAR+GH+++V+ LL + +
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
DK G T LH+A + E+V++LL+A A V DK G T LH+A R+ EIV E+L
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIV-EVLL 121
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KT D+A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLL 88
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K G + +G LH AAR+GH+++V+ LL + DK G+T +A++
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIREGHE 147
Query: 257 EVVKLLLEA 265
++ ++L +A
Sbjct: 148 DIAEVLQKA 156
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 36/153 (23%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA+ G L V+ +L +GA+ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLK----------AGADVNA----------------------- 63
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 64 -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVL 120
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + GK A R+GH D+ + L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 88
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K G + +G LH AAR+GH+++V+ LL + DK G+T +A+ +
Sbjct: 89 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNE 147
Query: 257 EVVKLLLEA 265
++ ++L +A
Sbjct: 148 DIAEVLQKA 156
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V L++ +G + +G LH AAR+GH+++V+ LL + +
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
DK G T LH+A + E+V++LL+A A V DK G T LH+A R+ EIV E+L
Sbjct: 65 -DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIV-EVLL 121
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KT D+A
Sbjct: 122 KAGADVNAQDKFGKTPFDLA 141
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA+ G L E+ E+ LLK +
Sbjct: 37 TPLHLAAREGHL-------------------------EIVEV-------LLKAGAD--VN 62
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
K++ G+ PLH+AA +GH IV+VLL ++ TPL AA GH +V E+L
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVL 120
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + GK A G+ D+ + L
Sbjct: 121 LKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
++ +G+ PLH+AA GH IV+VLL + D + + G TPL AA RGH +V E+
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG---VTPLHLAARRGHLEIV-EV 98
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254
L K+G + S S+G LH AA++GH+++V+ LL K+ DK G+TA +++
Sbjct: 99 LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Query: 255 SCEVVKLL 262
+ ++ ++L
Sbjct: 158 NEDLAEIL 165
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L K+G + S G LH AAR+GH+++V+ LL K+
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADV 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
+D G T LH+A K E+V++LL+ + A V DKFG TA ++
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA GH+++V+ LL + + D G T LH+A + E+V++LL+ + A
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIVEVLLK-NGA 104
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
V D G T LH+A ++ EIV LL +VNA + KTA DI+
Sbjct: 105 DVNASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDIS 153
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATP 178
+V LLK + K+ G PLH+AA +GH IV+VLL + D + S + G TP
Sbjct: 62 IVEVLLKNGAD--VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHG---FTP 116
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
L AA RGH +V E+L K+G + GK A + G+ D+ + L
Sbjct: 117 LHLAAKRGHLEIV-EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + R D G T LH+A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
G T LH+A R+ EIV LL +VNA T L +A + EI + L
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLK-NGADVNASDSHGFTPLHLA----AKRGHLEIVEVLL 133
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKD 362
+ GA ++N +D+ KT I D
Sbjct: 134 KNGA----DVN-AQDKFGKTAFDISID 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PLH AA GH I +L+ ++ T TPL+ AA H V L+ K G L++
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
+ G LH AA++GH +VV+ LLS D G T + A + + ++VKLLL
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 264 E------------------------ADAAIVMLPDK--------FGNTALHVATRKKRTE 291
D A ++L K G++ LH+A R+ R +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIA 318
V LS D++V ++ +T L A
Sbjct: 192 CVVLFLS-RDSDVTLKNKEGETPLQCA 217
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVN-------ELLKY 128
+ LH AA+ G + ++ +GA DT + R+ ++ E +KY
Sbjct: 13 SPLHAAAEAGHVDICHMLVQ----------AGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 129 STKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG 186
K G + K+ G LH+AA +GH+ +VQ LL + TP++ A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 187 HTAVVNELLSKDGGLLEISRSNGKN-ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
H +V LLSK G + I R N +N LH+AA G VD+ + LL+ L + G +
Sbjct: 123 HVDLVKLLLSK-GSDINI-RDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDS 179
Query: 246 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 285
LH+A + + V L L D+ V L +K G T L A+
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCAS 218
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
++ N ++ LH AA GHVD+ L+ + ++ + +T L A + E VK
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKY 62
Query: 262 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
L++A A+V D G+T LH+A +K E+V LLS +VN
Sbjct: 63 LIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ SG PLH+AA++GH IV+VLL H ++ + TPL AA GH +V E+L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K+G + + + G LH AA GH+++V+ LL + DK G+TA +++ +
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
++ ++L
Sbjct: 160 DLAEIL 165
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + +GK LH AA +GH+++V+ LL +
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
DK G T LH+A E+V++LL+ + A V D +G T LH+A EIV LL
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 180
+V LLK+ + ++ G PLH+AA+ GH IV+VLL + ++ T TPL
Sbjct: 62 IVEVLLKHGAD--VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD-TYGFTPLH 118
Query: 181 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
AA GH +V E+L K G + GK A + G+ D+ + L
Sbjct: 119 LAADAGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ G+ PLH+AA GH IV+VLL + D + S TG TPL AA GH +V E+L
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
K G + ++G LH AA+ GH+++V+ LL + + DK G+TA +++ +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 256 CEVVKLL 262
++ ++L
Sbjct: 159 EDLAEIL 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + + ++G LH AA GH+++V+ LL K+
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
+D G T LH+A E+V++LL+ A V D G+T LH+A + EIV E+L
Sbjct: 76 SDLTGITPLHLAAATGHLEIVEVLLKH-GADVNAYDNDGHTPLHLAAKYGHLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
G+ PLH+AA GH IV+VLL + D + T G +TPL AA GH +V E+L K+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIV-EVLLKN 102
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 258
G + NG LH AA +GH+++V+ LL + DK G+TA +++ + ++
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDL 161
Query: 259 VKLL 262
++L
Sbjct: 162 AEIL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA GH+++V+ LL K+ D G T LH+A E+V++LL+ + A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGA 104
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
V D G T LH+A + EIV LL +VNA + KTA DI+
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 76 TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
T LHLAA G L V+ +L G D L +V LLK +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD--V 106
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLL 161
K+ +G PLH+AA +GH IV+VLL
Sbjct: 107 NAKDDNGITPLHLAANRGHLEIVEVLL 133
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
G+ ++ G PLH+AA+ G ++ +LL H G NA V
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVP----------- 122
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
LH A +QGH VVK LL + + + D G T L A
Sbjct: 123 --------------------LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACS 161
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
G E+V LLL+ A+I +K GNTALH A +K V ELL L +V L + +
Sbjct: 162 GGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHV-FVVELLLLHGASVQVLNKRQR 219
Query: 313 TALDIAE 319
TA+D AE
Sbjct: 220 TAVDCAE 226
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 69 VTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLK 127
VT + + LH+AA G + +L +G ++ + VV LL
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 128 YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 187
+ K +K+ SG PL A GHH +V +LL H S++ + N T L A H
Sbjct: 141 SNAKP--NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGN-TALHEAVIEKH 197
Query: 188 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 222
VV ELL G +++ + A+ A + +
Sbjct: 198 VFVV-ELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
G+ PLH+AA GH IV+VLL + D + + G TPL AA RGH VV E+L K+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG---VTPLHLAADRGHLEVV-EVLLKN 102
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 258
G + + NG LH AA GH+++V+ LL + DK G+TA +++ + ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Query: 259 VKLL 262
++L
Sbjct: 162 AEIL 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + S G LH AA GH+++V+ LL K+
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G T LH+A EVV++LL+ + A V D G T LH+A EIV LL
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 135 -HGADVNAQDKFGKTAFDIS 153
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 76 TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
T LHLAA G L V+ +L G D +L VV LLK +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD--V 106
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+ +GF PLH+AA GH IV+VLL H
Sbjct: 107 NANDHNGFTPLHLAANIGHLEIVEVLLKH 135
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
LH AA+ +V+ + + Q G N+TPL A +GH ++V +L+ K G +
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLL 263
G + +H AA+ GH +V L++K Q D+ G T L A + S + +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 264 EADAAIVMLPDKF-GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319
+ + V L DK+ NTALH A T +++ LL NV+A ++ALD+A+
Sbjct: 164 TFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAK 218
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 43/211 (20%)
Query: 62 KKKYVKQVTGRHNDTELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSS 120
K V Q+ G N T LH A ++G L V Q++ YG D ++ D E
Sbjct: 64 KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI--------DGE------- 108
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL--DHDPSLSQTTGPSNATP 178
G +H+AA GH +IV L+ D + G TP
Sbjct: 109 --------------------GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG---MTP 145
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-ALHFAARQGHVDVVKALLSKDPQLAR 237
L+ AA R H+ LL + + KN ALH+A G+ V+ LL +
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205
Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
+ + KG++AL +A + ++ ++ L EA A
Sbjct: 206 Q-NIKGESALDLAKQRKNVWMINHLQEARQA 235
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL--SKD 232
N T L AA +V +SK + ++ LH+A RQGH+ +V L+ D
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
P L D +G + +H+A + +V L+ + M+ D+ G T L A + +
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVD 157
Query: 293 VTELLSLPDTNVNALTRDHK-TALDIA 318
T LL + +VN + HK TAL A
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWA 184
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
R+ DK+ T LH A ++VK + A + L +T LH ATR+ +V +L
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95
Query: 297 L 297
+
Sbjct: 96 M 96
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ +G PLH+AA GH IV+VLL H D S G TPL AA GH +V E+L
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG---YTPLHLAAYWGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
K+G + S+G LH AA+ G++++V+ LL + + DK G+TA +++ +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 256 CEVVKLL 262
++ ++L
Sbjct: 159 EDLAEIL 165
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + + + G LH AA GH+++V+ LL +
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
+D G T LH+A E+V++LL+ + A V D G T LH+A + EIV E+L
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ SG+ PLH+AA GH IV+VLL + ++ + TPL AA GH +V E+L
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K+G + + G LH AA GH+++V+ LL K+ DK G+TA +++ +
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
++ ++L
Sbjct: 160 DLAEIL 165
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + ++G LH AA GH+++V+ LL K+
Sbjct: 18 LLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G T L +A E+V++LL+ + A V D G+T LH+A EIV LL
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 135 -NGADVNAQDKFGKTAFDIS 153
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ +G PLH+AAV GH IV+VLL H + TPL AA GH +V E+L K
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
G + G LH AA +GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVK 260
+ K
Sbjct: 161 LAK 163
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V L++ +G + + G LH AA GH+++V+ LL +
Sbjct: 18 LLEAARAGQDDEVRILIA-NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G T LH+A E+V++LL+ A + D G+T LH+A + EIV LL
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
+G LH AA+ GH + VK LLSK + R+ K G T LH+A K E+VKLLL A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 268 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
A V K GNT H+A + EIV +LL +VNA
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNA 103
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL +AA GH V +LLSK G + +G LH AA+ GH ++VK LL+K +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
R+ K G T H+A K E+VKLL
Sbjct: 70 ARS-KDGNTPEHLAKKNGHHEIVKLL 94
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198
+ G PLH AA GH V+ LL ++ + N TPL AA GH +V LL+K
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAK- 64
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 239
G + +G H A + GH ++VK L +K + R+
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 241 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 300
K G T LH A K E VK LL + A V K GNT LH+A + EIV LL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-K 64
Query: 301 DTNVNALTRDHKTALDIAE 319
+VNA ++D T +A+
Sbjct: 65 GADVNARSKDGNTPEHLAK 83
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 271 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
M K GNT LH A + E V +LLS +VNA ++D T L +A
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLA 49
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
+++ G PLH+AA GH IV++LL ++ + N TP A GH +V L +
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN-TPEHLAKKNGHHEIVKLLDA 96
Query: 197 K 197
K
Sbjct: 97 K 97
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ SG PLH+AA GH IV+VLL H ++ +TPL AA GH +V E+L K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
G + + G LH AA GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVKLL 262
+ ++L
Sbjct: 161 LAEIL 165
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
T S TPL AAT GH +V E+L K G + G LH AA GH+++V+ L
Sbjct: 41 NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
L + D G T LH+A E+V++LL+ A V DKFG TA ++
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 289 RTEI 292
++
Sbjct: 158 NEDL 161
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
+L +G + + ++G LH AA GH+++V+ LL + D G T LH+A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGSTPLHLAALI 90
Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
E+V++LL+ A + + D +G+T LH+A EIV LL +VNA + KT
Sbjct: 91 GHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKT 148
Query: 314 ALDIA 318
A DI+
Sbjct: 149 AFDIS 153
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ SG PLH+AA GH IV+VLL H ++ +TPL AA GH +V E+L K
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
G + + G LH AA GH+++V+ LL + + DK G+TA +++ + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 258 VVKLL 262
+ ++L
Sbjct: 161 LAEIL 165
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
T S TPL AAT GH +V E+L K G + G LH AA GH+++V+ L
Sbjct: 41 NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
L + D G T LH+A E+V++LL+ A V DKFG TA ++
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 289 RTEI 292
++
Sbjct: 158 NEDL 161
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 194 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253
+L +G + + ++G LH AA GH+++V+ LL + D G T LH+A
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGSTPLHLAALI 90
Query: 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313
E+V++LL+ A + + D +G+T LH+A EIV LL +VNA + KT
Sbjct: 91 GHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKT 148
Query: 314 ALDIA 318
A DI+
Sbjct: 149 AFDIS 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
G PLH+ GH I++VLL + ++ + S TPL AA RGH +V E+L K G
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD-KSGWTPLHLAAYRGHLEIV-EVLLKYGA 104
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
+ G LH AA GH+++V+ LL + + DK G+TA +++ + ++ +
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNEDLAE 163
Query: 261 LL 262
+L
Sbjct: 164 IL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL GH ++ E+L K + S +G LH AA +GH+++V+ LL +
Sbjct: 49 TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296
D +G T LH+A + E+V++LL+ A V DKFG TA ++ ++ L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 297 LSL 299
L
Sbjct: 166 QKL 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 180
++ LLKY+ + ++SG+ PLH+AA +GH IV+VLL + ++ TPL
Sbjct: 62 IIEVLLKYAAD--VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD-YQGYTPLH 118
Query: 181 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
AA GH +V E+L K G + GK A + G+ D+ + L
Sbjct: 119 LAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + D G T LH+ V E++++LL+ AA V DK
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
G T LH+A + EIV LL +VNA+ T L +A + + EI + L
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA----AEDGHLEIVEVLL 133
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKD 362
+ GA ++N +D+ KT I D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 34/88 (38%)
Query: 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT 135
T LHLAA RG L E+ E+ LLKY +
Sbjct: 82 TPLHLAAYRGHL-------------------------EIVEV-------LLKYGAD--VN 107
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+ G+ PLH+AA GH IV+VLL +
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV L+ A+ A V D FG T LH+ EI+ LL
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-A 71
Query: 303 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339
+VNA + T L +A + EI + L + GA
Sbjct: 72 DVNASDKSGWTPLHLA----AYRGHLEIVEVLLKYGA 104
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + + G LH AAR GH+++V+ LL K+
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G T LH+A K E+V++LL+ A V D G+T LH+A EIV LL
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 135 YG-ADVNAQDKFGKTAFDIS 153
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ G PLH+AA GH IV+VLL + ++ S +TPL AA RGH +V E+L
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD-FSGSTPLHLAAKRGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
K G + + G LH AA GH+++V+ LL + + DK G+TA +++ +
Sbjct: 101 KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNE 159
Query: 257 EVVKLL 262
++ ++L
Sbjct: 160 DLAEIL 165
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L K+G + +G LH AA++GH+++V+ LL +
Sbjct: 49 TPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
D G T LH+A E+V++LL+ A V DKFG TA ++
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKY-GADVNAQDKFGKTAFDIS 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 40/158 (25%)
Query: 73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
+ DT LHLAA+ G L V+ +L +GA+ VN L
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLK----------NGAD------------VNAL------- 76
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAV 190
+ SG PLH+AA +GH IV+VLL + D + T G +TPL AA GH +
Sbjct: 77 -----DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIG---STPLHLAADTGHLEI 128
Query: 191 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
V E+L K G + GK A + G+ D+ + L
Sbjct: 129 V-EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV L+ A+ A V D +G+T LH+A R EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNAEDTYGDTPLHLAARVGHLEIV-EVLLKNGA 71
Query: 303 NVNALTRDHKTALDIA 318
+VNAL T L +A
Sbjct: 72 DVNALDFSGSTPLHLA 87
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
G PLH+AA GH IV+VLL + ++ ATPL AA GH +V E+L K G
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLHLAADNGHLEIV-EVLLKHGA 104
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
+ G LH AA GH+++V+ LL + DK G+TA +++ + ++ +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 261 LL 262
+L
Sbjct: 164 IL 165
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + TD G T LH+A K E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
+G T LH+A EIV E+L +VNA + T L +A + + EI + L
Sbjct: 79 YGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLA----AYDGHLEIVEVLL 133
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKD 362
+ GA ++N +D+ KT I D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 76 TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
T LHLAA+ G L V+ +L YG D N +V LLK+ +
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD--V 106
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLL 161
K+ GF PLH+AA GH IV+VLL
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLL 133
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
AEG
Sbjct: 183 AEG 185
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAV------V 191
SG+ P HIA G+ +V+ L D P L++ T T H AV V
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN--------QGVTCLHLAVGKKWFEV 122
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
++ L ++G + I + LH AA G + +++ L DK+G T L A+
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
+ LL+E A L D G A VA ++
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
AEG
Sbjct: 183 AEG 185
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 140 SGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAV------V 191
SG+ P HIA G+ +V+ L D P L++ T T H AV V
Sbjct: 71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN--------QGVTCLHLAVGKKWFEV 122
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
++ L ++G + I + LH AA G + +++ L DK+G T L A+
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
+ LL+E A L D G A VA ++
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 201
PLH A ++ VQ LL PSL PL + + + + LLSK + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVV 259
+ +G H A G+++VVK+L + P L + T+ +G T LH+AV + EV
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 260 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 317
+ L+E + A V + DKF LH A +++ L L + VN + T L +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 318 AEG 320
AEG
Sbjct: 183 AEG 185
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAV----- 190
+ SG+ P HIA G+ +V+ L D P L++ T T H AV
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN--------QGVTCLHLAVGKKWF 120
Query: 191 -VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249
V++ L ++G + I + LH AA G + +++ L DK+G T L
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288
A+ + LL+E A L D G A VA ++
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PLH A + GH + V++LL H ++ T + TPL +A G VN LL + G ++
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVN-LLLQHGASVQ 96
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
S+ + +H AAR+GHV+ V +L++ + + G T L++A + Q VK LL
Sbjct: 97 -PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 154
Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
E+ A + K ++ LH R E+ L+
Sbjct: 155 ESGADVNQ--GKGQDSPLHAVARTASEELACLLMDF 188
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 233
S+ +P+ AA GH + L+S+ G + I ++ + LH A GH+ VK LL
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
Q+ T T L A S + V LLL+ A++ P+ + +H A R+ E V
Sbjct: 61 QVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECV 117
Query: 294 TELLS 298
L++
Sbjct: 118 NSLIA 122
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 120 SVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
S V LLK+ + G+T + PL A V G V +LL H S+ + A+P
Sbjct: 50 SCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGASVQPES--DLASP 104
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
+ AA RGH VN L++ GG ++ S+ L+ A VK LL A
Sbjct: 105 IHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESG---ADV 160
Query: 239 TDKKGQ-TALHMAVKGQSCEVVKLLLEADA 267
KGQ + LH + S E+ LL++ A
Sbjct: 161 NQGKGQDSPLHAVARTASEELACLLMDFGA 190
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PLH A + GH + V++LL H ++ T + TPL +A G VN LL G
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQH--GASV 151
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
S+ + +H AAR+GHV+ V +L++ + + G T L++A + Q VK LL
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 210
Query: 264 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
E+ A + K ++ LH R E+ L+
Sbjct: 211 ESGADVNQ--GKGQDSPLHAVVRTASEELACLLMDF 244
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 233
S+ +P+ AA GH + L+S+ G + I ++ + LH A GH+ VK LL
Sbjct: 58 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
Q+ T T L A S + V LLL+ A++ P+ + +H A R+ E V
Sbjct: 117 QVNGVT-ADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECV 173
Query: 294 TELLS 298
L++
Sbjct: 174 NSLIA 178
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 120 SVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
S V LLK+ + G+T + PL A V G V +LL H S+ + A+P
Sbjct: 106 SCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGASVQPES--DLASP 160
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
+ AA RGH VN L++ GG ++ S+ L+ A VK LL A
Sbjct: 161 IHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESG---ADV 216
Query: 239 TDKKGQ-TALHMAVKGQSCEVVKLLLEADA 267
KGQ + LH V+ S E+ LL++ A
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGA 246
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + G LH AA GH ++V+ LL + R
Sbjct: 18 LLEAARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G T LH+A E+V++LL+ A V D +G T LH+A + EIV E+L
Sbjct: 77 -DTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
+TPL AA GH +V E+L K G + ++G LH AA GH+++V+ LL +
Sbjct: 48 STPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
D G T LH+A E+V++LL+ A V DKFG TA ++ ++
Sbjct: 107 -NAQDAYGLTPLHLAADRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 296 LLSL 299
L L
Sbjct: 165 LQKL 168
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 73 HND---TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY 128
H+D T LHLAA G V+ +L +G D +V LLKY
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+ ++ G PLH+AA +GH IV+VLL H
Sbjct: 103 GAD--VNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV L+ A+ A V D G+T LH+A EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNAHDDQGSTPLHLAAWIGHPEIV-EVLLKHGA 71
Query: 303 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339
+VNA D T L +A + EI + L + GA
Sbjct: 72 DVNARDTDGWTPLHLA----ADNGHLEIVEVLLKYGA 104
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 14/224 (6%)
Query: 97 IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
+ + MV NL+ + ++ E++ S++ + K TR ++ LH A GH I
Sbjct: 5 VSNLMVCNLA---YSGKLEELKESIL------ADKSLATRTDQDSRTALHWACSAGHTEI 55
Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
V+ LL ++ + +PL AA+ G +V LL K G + NG LH+A
Sbjct: 56 VEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYA 113
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
A + ++ LL + D TA+H A + +++ +LL A+ + D
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 171
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
GNT LH+A ++R E L+S ++ ++ KT L +A+G
Sbjct: 172 GNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG 214
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 14/224 (6%)
Query: 97 IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 156
+ + MV NL+ + ++ E++ S++ + K TR ++ LH A GH I
Sbjct: 6 VSNLMVCNLA---YSGKLEELKESIL------ADKSLATRTDQDSRTALHWACSAGHTEI 56
Query: 157 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216
V+ LL ++ + +PL AA+ G +V LL K G + NG LH+A
Sbjct: 57 VEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKALLGK-GAQVNAVNQNGCTPLHYA 114
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
A + ++ LL + D TA+H A + +++ +LL A+ + D
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTE 172
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320
GNT LH+A ++R E L+S ++ ++ KT L +A+G
Sbjct: 173 GNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG 215
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L ++G + +NG LH AA GH+++V+ LL +
Sbjct: 37 TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
+ D G T L++A E+V++LL+ A V DKFG TA ++
Sbjct: 96 AK-DATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ G PLH+AA GH IV+VLL + ++ + TPL AA+ GH +V E+L K
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD-TNGTTPLHLAASLGHLEIV-EVLLK 89
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 257
G + + G L+ AA GH+++V+ LL + DK G+TA +++ + +
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDIGNED 148
Query: 258 VVKLL 262
+ ++L
Sbjct: 149 LAEIL 153
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ A D G+T LHMA E+V++LL + A V D
Sbjct: 9 AARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDT 66
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 335
G T LH+A EIV LL +VNA T L +A + EI + L
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLA----AYWGHLEIVEVLL 121
Query: 336 RCGAVRANELNQPRDELRKTVTQIKKDV 363
+ GA ++N +D+ KT I D+
Sbjct: 122 KHGA----DVN-AQDKFGKTAFDISIDI 144
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 76 TELHLAAQRGDLGAVKQIL-YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
T LH+AA G L V+ +L G D V + +V LLKY +
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD--V 94
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
K+ +G PL++AA GH IV+VLL H
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLKH 123
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 207
AA G V++L+ + ++ T + TPL AA G +V E+L K+G + S S
Sbjct: 13 AAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
G LH AA GH+++V+ LL + D+ G T LH+A E+V++LL+
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 268 AIVMLPDKFGNTALHVATRKKRTEI 292
A V D G TA ++ + + ++
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDL 153
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L +G + + NG LH AA G +++V+ LL K+
Sbjct: 10 LLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNA 67
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
+D G T LH+A E+V++LL+ A V D+ G T LH+A + EIV LL
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 299 LPDTNVNALTRDHKTALDIA 318
+VNA TA DI+
Sbjct: 127 -HGADVNAQDALGLTAFDIS 145
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ +G PLH+AA G IV+VLL + D + S + G TPL AA GH +V E+L
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG---ITPLHLAAYDGHLEIV-EVL 91
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
K G + G LH AA G +++V+ LL + D G TA +++
Sbjct: 92 LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADV-NAQDALGLTAFDISINQGQ 150
Query: 256 CEVVKLL 262
++ ++L
Sbjct: 151 EDLAEIL 157
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 76 TELHLAAQRGDLGAVKQIL------YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYS 129
T LHLAA G L V+ +L DS + L A +D + +V LLK+
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHL-----EIVEVLLKHG 95
Query: 130 TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+ +R+G+ PLH+AA+ G IV+VLL H
Sbjct: 96 AD--VNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH-----DPSLSQTTGPSNATPLVSAATRGHTAVVN 192
+ +G LH + + +VQ LLD D P T L + T+ V
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
+L + G + + G+ AL A G VDVVKALL+ + + + D G TAL A +
Sbjct: 168 QLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACE 225
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
E+ LLL + + L D+ G+TAL VA ++EI + L S
Sbjct: 226 HGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 160 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAA 217
LLD+ +++ + G T L + + + VV +LL D G+ ++ + N G + + A
Sbjct: 99 LLDYVVNIADSNGN---TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTA 153
Query: 218 -----RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
Q ++ V L + + + + GQTAL +AV +VVK LL +A V +
Sbjct: 154 LATLKTQDDIETVLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNV 211
Query: 273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 328
D G+TAL A EI LL++P +++ RD TAL +A SE AS
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 252
L K G + NG LH+AA + ++ LL +P D TA+H A
Sbjct: 93 LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 312
+ ++V +LL A+ + D GNT LH+A ++R E + L ++ ++ K
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVE-EAKFLVTQGASIYIENKEEK 206
Query: 313 TALDIAEG--------LPSSEEAS 328
T L +A+G L EEAS
Sbjct: 207 TPLQVAKGGLGLILKRLAEGEEAS 230
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
A G +D +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
G + LH+A R EIV LL + +VNA+ ++ T L A
Sbjct: 73 GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
+ + A G + E + D L + + + ALH+A GH ++V+ LL + +
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G + LH+A E+VK LL A V ++ G T LH A K R EI LL
Sbjct: 70 -DDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL- 126
Query: 299 LPDTNVNALTRDHKTA 314
+ N +DH A
Sbjct: 127 --EGGANPDAKDHYDA 140
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
TR ++ LH A GH IV+ LL ++ + +PL AA+ G +V L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKAL 92
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVK 252
L K G + NG LH+AA + ++ LL +P D TA+H A
Sbjct: 93 LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAA 148
Query: 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALT 308
+ ++V +LL A+ + D GNT LH+A ++R E +VT+ S+ N
Sbjct: 149 KGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN----- 202
Query: 309 RDHKTALDIAEG--------LPSSEEAS 328
++ KT L +A+G L EEAS
Sbjct: 203 KEEKTPLQVAKGGLGLILKRLAEGEEAS 230
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276
A G +D +K + D LA RTD+ +TALH A E+V+ LL+ V D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 277 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
G + LH+A EIV LL + +VNA+ ++ T L A
Sbjct: 73 GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
+ + A G + E + D L + + + ALH+A GH ++V+ LL + +
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D G + LH+A E+VK LL A V ++ G T LH A K R EI LL
Sbjct: 70 -DDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL- 126
Query: 299 LPDTNVNALTRDHKTA 314
+ N +DH A
Sbjct: 127 --EGGANPDAKDHYDA 140
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 84/176 (47%), Gaps = 8/176 (4%)
Query: 122 VNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 181
V E+L+ +T + + + G PL+IA I + L+D ++ S+ +P +
Sbjct: 21 VKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD-SPYLY 78
Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 241
A +G T ++ +L L G NAL AA +GH+D VK LL + +
Sbjct: 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 242 KGQTALHMAV---KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
G TAL AV +G ++VKLL+E + A + D G TA+ A +K TEI
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDYANQKGYTEI 193
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 191
L +N PLH+A + I + LL DP L G TPL A +G A V
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 94
Query: 192 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 246
L +L+ + NG LH A+ G++ +V+ L+S + + G+TA
Sbjct: 95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 247 LHMAVKGQSCEVVKLLLEADAAI 269
LH+AV Q+ ++V LLL+ A +
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADV 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL--SKDPQ 234
TPL A + LL G E+ G LH A QG + V L P
Sbjct: 47 TPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 235 L---ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
L + T+ G T LH+A +V+LL+ A + G TALH+A + +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 324
+V+ LL +VN +T + + G PS+
Sbjct: 166 LVSLLLKC-GADVNRVTYQGYSPYQLTWGRPST 197
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 191
L +N PLH+A + I + LL DP L G TPL A +G A V
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 91
Query: 192 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 246
L +L+ + NG LH A+ G++ +V+ L+S + + G+TA
Sbjct: 92 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 247 LHMAVKGQSCEVVKLLLEADAAI 269
LH+AV Q+ ++V LLL+ A +
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGADV 174
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL--SKDPQ 234
TPL A + LL G E+ G LH A QG + V L P
Sbjct: 44 TPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 235 L---ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291
L + T+ G T LH+A +V+LL+ A + G TALH+A + +
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 292 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSS 324
+V+ LL +VN +T + + G PS+
Sbjct: 163 LVSLLLKC-GADVNRVTYQGYSPYQLTWGRPST 194
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
++ G+ PLH A IV++LL H DP L + G ATP + AA G ++
Sbjct: 54 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG---ATPFILAAIAGSVKLLKL 110
Query: 194 LLSKDGGLLEIS------------------------------------------RSNGKN 211
LSK + E R G
Sbjct: 111 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAA 268
AL AA +GHV+V+K LL + D G+ AL A+ E + LL A
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 230
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
V + + G T L +A KK +V LL +N D KTAL +A
Sbjct: 231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 5/178 (2%)
Query: 94 LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 153
YG + M + G + R + VN L+ TKE R + G L AA +GH
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 154 HAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 210
++++LLD D + G + + ++ + LL G + + GK
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
L A + H+ +V+ LL ++ TD G+TAL +AV+ + ++ +LL + A+
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
RR + L AV+ + ++V+ LLE A + ++ G T LH A + R +IV
Sbjct: 18 GRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 77
Query: 296 LL 297
LL
Sbjct: 78 LL 79
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
N G LHIA+++G V+ LL + DP++ G TPL A GH VV ELL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVV-ELL 62
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
+ L+ + + LH AA+ GHVD+VK LLS
Sbjct: 63 LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K+ +G+ PLH A GH +V++LL H +L TTG N +PL AA GH +V LLS
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 200 GLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCE 257
G+ + G+ LH A+ +G + V+ LL DP + D G T LH A +
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLK 57
Query: 258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
VV+LLL+ A+V ++ LH A + +IV LLS
Sbjct: 58 VVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 241
A+ +G V E L ++G + G LH A GH+ VV+ LL + L T
Sbjct: 17 ASIKGDIPSV-EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGY 74
Query: 242 KGQTALHMAVKGQSCEVVKLLLEADAA 268
+ + LH A K ++VKLLL A+
Sbjct: 75 QNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 66 VKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNE 124
+ T +T LH+A+ +GD+ +V+ +L G D + + VV
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 125 LLKYSTKEGLTRKNRSGF---DPLHIAAVQGHHAIVQVLLDH 163
LL++ N +G+ PLH AA GH IV++LL +
Sbjct: 62 LLQHKA-----LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 86/230 (37%), Gaps = 50/230 (21%)
Query: 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNE 193
++ G+ PLH A IV++LL H DP L + G ATP + AA G ++
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG---ATPFLLAAIAGSVKLLKL 90
Query: 194 LLSKDGGLLEIS------------------------------------------RSNGKN 211
LSK + E R G
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAA 268
AL AA +GHV+V+K LL + D G+ AL A+ E + LL A
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
V + + G T L +A KK +V LL +N D KTAL +A
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 94 LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 153
YG + M + G + R + VN L+ TKE R + G L AA +GH
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 154 HAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 210
++++LLD D + G + + ++ + LL G + + GK
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
L A + H+ +V+ LL ++ TD G+TAL +AV+ + ++ +LL
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ +A + DK G T LH+A + EVVKLLLEA A V DK
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDK 88
Query: 276 FGNTALHVA 284
FG TA ++
Sbjct: 89 FGKTAFDIS 97
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V L++ +G + NG LH AAR GH++VVK LL + +
Sbjct: 28 LLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 239 TDKKGQTALHMAVKGQSCEVVKLL 262
DK G+TA +++ + ++ ++L
Sbjct: 87 -DKFGKTAFDISIDNGNEDLAEIL 109
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV +L A+ A V DK G+T LH+A R E+V LL
Sbjct: 25 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 81
Query: 303 NVNALTRDHKTALDIA 318
+V A + KTA DI+
Sbjct: 82 DVXAQDKFGKTAFDIS 97
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLD 162
K+++G PLH+AA GH +V++LL+
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLE 78
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ +A + DK G T LH+A + EVVKLLLEA A V DK
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDK 70
Query: 276 FGNTALHVA 284
FG TA ++
Sbjct: 71 FGKTAFDIS 79
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV +L A+ A V DK G+T LH+A R E+V LL
Sbjct: 7 GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AGA 63
Query: 303 NVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 64 DVNAQDKFGKTAFDIS 79
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
G L+ AA G V +L +G + NG LH AAR GH++VVK LL
Sbjct: 3 GSDLGKKLLEAARAGQDDEV-RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
+ DK G+TA +++ + ++ ++L
Sbjct: 62 GADV-NAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLD 162
K+++G PLH+AA GH +V++LL+
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
S++E L + + +H A QG + ++ + ++ T TPL+ AA G
Sbjct: 8 SSRENLYFQGANSLS-VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI 65
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
AVV E L ++G ++ ++AL A +G+ D+VK LL + D G T L
Sbjct: 66 AVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLL 123
Query: 249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 299
AV G + VK+LLE+ A + D N+ A+ + R + I + LL L
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL+ AA G AVV E L ++G ++ ++AL A +G+ D+VK LL +
Sbjct: 36 TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 93
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 293
D G T L AV G + VK+LLE+ A + D N+ A+ + R + I
Sbjct: 94 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 294 TELLSL 299
+ LL L
Sbjct: 154 SHLLKL 159
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
+ + GF PL AA G A+V+ LL + DP Q G + L A ++G+T +V
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIV 83
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL + E NG L +A HV VK LL TD G ++ +AV
Sbjct: 84 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 141
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 204
+H A QG + ++ + ++ T TPL+ AA G AVV E L ++G ++
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVV-EFLLQNGADPQL 64
Query: 205 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
++AL A +G+ D+VK LL + D G T L AV G + VK+LLE
Sbjct: 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 265 ADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 299
+ A + D N+ A+ + R + I + LL L
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
+ + GF PL AA G A+V+ LL + DP Q G + L A ++G+T +V
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP---QLLGKGRESALSLACSKGYTDIV 85
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL + E NG L +A HV VK LL TD G ++ +AV
Sbjct: 86 KMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAV 143
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + D+ G T LH+A + E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
FG T LH+A + EIV LL +VNA + KTA DI+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ G PLH+AA GH IV+VLL + ++ TPL AA RGH +V E+L K
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN-FGITPLHLAAIRGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
G + GK A + G+ D+ + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L K G + + G LH AA +GH+++V+ LL +
Sbjct: 49 TPLHLAAQLGHLEIV-EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+V LLKY + ++ G PLH+AA++GH IV+VLL H
Sbjct: 62 IVEVLLKYGAD--VNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + D+KG T LH+A E+V++LL+ A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH-GADVNAHDN 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
G+T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+R G PLH+AA H IV+VLL H ++ +TPL AA GH +V E+L K
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLAALFGHLEIV-EVLLK 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
G + GK A + G+ D+ + L
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA H +V E+L K G + ++G LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 121 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 163
+V LLK+ + + G PLH+AA+ GH IV+VLL H
Sbjct: 62 IVEVLLKHGAD--VNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA++GH+++V+ LL + +D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
V DKFG TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA RGH +V E+L K G + S S G+ LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
+ DK G+TA +++ + ++ ++L
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDS 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ +G PLH+AA +GH IV+VLL H D + S + G TPL AAT GH +V E+L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR---TPLHLAATVGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
+ G + GK A + G+ D+ + L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA++GH+++V+ LL + R D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
V DKFG TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNARDI 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 197
+ +G PLH+AA +GH IV+VLL H ++ TPL AAT GH +V E+L +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD-IWGRTPLHLAATVGHLEIV-EVLLE 101
Query: 198 DGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
G + GK A + G+ D+ + L
Sbjct: 102 YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
PL AA RG+ + + E L G+ + ++ G AL++A GH D+V+ L ++
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLL 263
+ +K G TALH A ++V+LLL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 211 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 270
N LH AA++G++ ++ L + DK G TAL+ A G ++V+ L +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 271 MLPDKFGNTALHVATRKKRTEIVTELLS 298
+K G+TALH A K +IV LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 202
+PLH AA +G+ + ++ LD+ ++ + +T L A GH +V L ++ +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHKDIVEXLFTQPN--I 131
Query: 203 EISRSN--GKNALHFAARQGHVDVVKALLSK 231
E+++ N G ALH AA +G+ D+V+ LL+K
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 75 DTELHLAAQRGDLGAVKQIL------YGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKY 128
D LH AA+RG+L +++ L G+D L A +V L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA-----CHGGHKDIVEXLFTQ 128
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 161
E L ++N+ G LH AA +G+ IVQ+LL
Sbjct: 129 PNIE-LNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA++GH+++V+ LL + +D G+T LH+A E+V++LLE A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 269 IVMLPDKFGNTALHVA 284
V DKFG TA ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
A R G D V+ L++ + D G T LH+A K E+V++LL+ A V D
Sbjct: 21 ATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAKRGHLEIVEVLLKH-GADVNASDI 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
+G T LH+A EIV LL +VNA + KTA DI+
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDIS 120
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA RGH +V E+L K G + S G+ LH AA GH+++V+ LL +
Sbjct: 49 TPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
+ DK G+TA +++ + ++ ++L
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 138 NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 195
+ +G PLH+AA +GH IV+VLL H D + S G TPL AAT GH +V E+L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR---TPLHLAATVGHLEIV-EVL 99
Query: 196 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
+ G + GK A + G+ D+ + L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G + LH AA+ GH + LL RT K +T LHMA +V++LL+ A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLK-HGA 91
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
V D TALH AT E+V ELL +V+ ++ KTA DI+
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDIS 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
G PLH+AA GH + +VLL S T + TPL AA+ GH +V E+L K G
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIV-EVLLKHGA 91
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260
+ ALH+A H +VV+ L+ + ++ K +TA +++ + ++ +
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS-KFCKTAFDISIDNGNEDLAE 150
Query: 261 LL 262
+L
Sbjct: 151 IL 152
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNALHFAARQGHVDVVKAL 228
TT +PL AA GH + LL G+ +R+ + LH AA +GH ++V+ L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
L + + D TALH A + EVV+LL++ A V KF TA ++
Sbjct: 87 LKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDIS 140
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 128 YSTKE-----GLTRKNRSGFD--PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV 180
+ST E G++R R+ D PLH+AA +GH IV+VLL H ++ T L
Sbjct: 47 FSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALH 105
Query: 181 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
A H VV ELL K G + K A + G+ D+ + L
Sbjct: 106 WATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V +L+ +G + + G LH AA GH+++V+ LL K+
Sbjct: 18 LLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNA 75
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
T G+T LH+A E+V++LL+ A V DKFG TA ++ ++ L
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Query: 299 L 299
L
Sbjct: 135 L 135
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 200
G PLH+AA+ GH IV+VLL + ++ TG + TPL AA H +V E+L K G
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVN-ATGNTGRTPLHLAAWADHLEIV-EVLLKHGA 104
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKAL 228
+ GK A + G+ D+ + L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA GH +V E+L K+G + + + G+ LH AA H+++V+ LL +
Sbjct: 49 TPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
+ DK G+TA +++ + ++ ++L
Sbjct: 108 AQ-DKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV +L A+ A V D +G+T LH+A EIV E+L
Sbjct: 15 GKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGA 71
Query: 303 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKD 362
+VNA +T L +A + + EI + L + GA ++N +D+ KT I D
Sbjct: 72 DVNATGNTGRTPLHLA----AWADHLEIVEVLLKHGA----DVN-AQDKFGKTAFDISID 122
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + DK G T LH+A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318
G T LH+ EIV LL +VNA + KTA DI+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
+++ G PLH+AA+ H IV+VLL + ++ TPL A GH +V E+L
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE-TPLHLVAMYGHLEIV-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + GK A + G+ D+ + L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G LH AA H+++V+ LL K+ D G+T LH+ E+V++LL+ A
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH-GA 104
Query: 269 IVMLPDKFGNTALHVATRKKRTEI 292
V DKFG TA ++ ++
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDL 128
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL AA H +V E+L K+G + + G+ LH A GH+++V+ LL +
Sbjct: 49 TPLHLAAMNDHLEIV-EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV L+ A+ A V DK G T LH+A EIV LL
Sbjct: 15 GKKLLEAARAGQDDEVRILM--ANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGA 71
Query: 303 NVNALTRDHKTAL 315
+VNA+ +T L
Sbjct: 72 DVNAIDAIGETPL 84
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 27/205 (13%)
Query: 124 ELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS 181
+++K+ + G + + + G+ PLH AA G+ I + L+ + + TPL
Sbjct: 87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD-TPLDI 145
Query: 182 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ----GHVDVVKALLSKDPQLAR 237
A ++ +++ G +E +R + + ARQ GH++ V
Sbjct: 146 AEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV------------ 193
Query: 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE---IVT 294
R K G TALH+A EV+KLL++A V + D G T LH A + E I+
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 295 ELLSLPDTNVNALTRDHKTALDIAE 319
E L ++ A+ + +TA D+A+
Sbjct: 253 ENL----CDMEAVNKVGQTAFDVAD 273
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G TALH A + ++VK L+E + A + PD G LH A +I L+S
Sbjct: 73 GLTALHQACIDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLIS-QGA 130
Query: 303 NVNALTRDHKTALDI 317
+V A+ + T LDI
Sbjct: 131 HVGAVNSEGDTPLDI 145
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
++A + G T V LL + G + + +G ALH A +VD+VK L+ + +
Sbjct: 44 FLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQ 101
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283
D +G LH A ++ + L+ + A V + G+T L +
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDI 145
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
+ + + GF PL A+ G V+ LL+ DP + + L A+T G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL +D + I NG L +A R HV V+ALL++ L D G T + +AV
Sbjct: 86 GLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAI 269
++H A QG +D +K L K L + D++G T L A E V+ LLE AD I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 270 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
+ K +AL +A+ T+IV LL D ++N + T L
Sbjct: 65 LA---KERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ +G PLH A + Q+LL + + TPL+ AA +V +L++
Sbjct: 80 QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVK 252
D + + ++GK ALH+AA + + V LL ++D Q D K +T L +A +
Sbjct: 140 ADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 253 GQSCEVVKLLLE 264
S E K LL+
Sbjct: 194 EGSYEASKALLD 205
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 177 TPLVSAATRG--------------HTA-VVNELLSKDGGLLEISRSNGKNALHFAARQGH 221
TPL+ AA RG TA V+++LL++ L G+ +LH AAR
Sbjct: 4 TPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFAR 63
Query: 222 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
D K LL A D G+T LH AV + V ++LL A + G T L
Sbjct: 64 ADAAKRLLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPL 122
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 325
+A R +V +L++ D ++NA KTAL A + ++E
Sbjct: 123 ILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTE 165
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP 178
++V L +T+ L + + GF PLH A +G A+V++L+ ++ + TP
Sbjct: 17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTP 75
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
L AA+ GH +V +LL + ++ +G LH+A G V + L++
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVN-EHGNVPLHYACFWGQDQVAEDLVA 126
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 201
D + +G+ V++ LD+ + +PL A G +AVV E+L G
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64
Query: 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
+ + LH AA GH D+V+ LL + ++ G LH A +V +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 262 LLEADAAIVMLPDKFG 277
L+ A+ A+V + +K+G
Sbjct: 124 LV-ANGALVSICNKYG 138
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 116 EIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 175
E RS+VV L+ + + NR PLH+AA GH IVQ LL + ++ N
Sbjct: 49 EGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106
Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
PL A G V +L++ +G L+ I G+ VD KA L + L
Sbjct: 107 -VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP---------VDKAKAPLRE--LL 153
Query: 236 ARRTDKKGQT 245
R +K GQ
Sbjct: 154 RERAEKMGQN 163
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Query: 173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232
P + + G+ V L L +G + LH+A R+G VV+ L+ +
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG 62
Query: 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292
++ ++ T LH+A ++V+ LL+ A I + ++ GN LH A + ++
Sbjct: 63 ARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQV 120
Query: 293 VTELLS 298
+L++
Sbjct: 121 AEDLVA 126
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 129 STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 188
+T+ L + + GF PLH A +G A+V++L+ ++ + TPL AA+ GH
Sbjct: 22 NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASHGHR 80
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230
+V +LL + ++ +G LH+A G V + L++
Sbjct: 81 DIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVA 121
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 4/165 (2%)
Query: 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 202
D + +G+ V++ LD+ + +PL A G +AVV E+L G +
Sbjct: 2 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGARI 60
Query: 203 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
+ LH AA GH D+V+ LL + ++ G LH A +V + L
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDL 119
Query: 263 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307
+ A+ A+V + +K+G + A R E++ E N+N +
Sbjct: 120 V-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 162
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 116 EIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 175
E RS+VV L+ + + NR PLH+AA GH IVQ LL + ++ N
Sbjct: 44 EGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101
Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
PL A G V +L++ +G L+ I G+ VD KA L + L
Sbjct: 102 -VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP---------VDKAKAPLRE--LL 148
Query: 236 ARRTDKKGQ 244
R +K GQ
Sbjct: 149 RERAEKMGQ 157
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---------LSQ 169
+S V +L Y+ G+ R G LH+A H VLL PS L+Q
Sbjct: 58 ASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGKNALHFAARQGHVDVVK 226
+ + T AA NE +D LE +G LH A ++V+
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
L L + G+T LH+AV+ Q+ V++LLL+A A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 208 NGKNALHFAARQGHVDVVKALL--SKDPQLARRTDKKGQTALHMA-VKGQSCEVVKLLLE 264
+G ALH A H + LL S + + GQTALH+A + G++ V KL
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-- 65
Query: 265 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
A A V++ ++ G+TALH+A R + LL
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
G T LH+AV + E+V+LL +A A + G T LH+A + ++ LL
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 119 SSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---------LSQ 169
+S V +L Y+ G+ R G LH+A H VLL PS L+Q
Sbjct: 58 ASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115
Query: 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGKNALHFAARQGHVDVVK 226
+ + T AA NE +D LE +G LH A ++V+
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
L L + G+T LH+AV+ Q+ V++LLL+A A
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 208 NGKNALHFAARQGHVDVVKALL--SKDPQLARRTDKKGQTALHMA-VKGQSCEVVKLLLE 264
+G ALH A H + LL S + + GQTALH+A + G++ V KL
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY-- 65
Query: 265 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
A A V++ ++ G+TALH+A R + LL
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297
G T LH+AV + E+V+LL +A A + G T LH+A + ++ LL
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 103 GNLSGAEFDTEVAEI-RSSVVNELLKYSTKEGLTRKNRSGFD--PLHIAAVQGHHAIVQV 159
G + +E D ++ E ++ V + K T + + ++ G PLH AA ++V+
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 160 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219
LL H + PL +A + GH V ELL K G ++ ++ LH AA +
Sbjct: 61 LLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAK 118
Query: 220 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
G ++ K LL DP + ++ G T L + G + ++ LL DAA+
Sbjct: 119 GKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 165
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 103
Query: 273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
D + T LH A K + EI LL + RD T LD+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 147
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 75 DTELHLAAQRGDLGAVKQI--LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
D +L AA+ GD+ VK++ + ++ + + R SVV LL++
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD- 67
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
+ K++ G PLH A GH+ + ++L+ H ++ TPL AA +G +
Sbjct: 68 -VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICK 125
Query: 193 ELL 195
LL
Sbjct: 126 LLL 128
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PLH AA ++V+ LL H + PL +A + GH V ELL K G ++
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVN 106
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
++ LH AA +G ++ K LL DP + ++ G T L + G + ++
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQD 161
Query: 262 LLEADAAIV 270
LL DAA++
Sbjct: 162 LLRGDAALL 170
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 107
Query: 273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
D + T LH A K + EI LL + RD T LD+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 151
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 75 DTELHLAAQRGDLGAVKQI--LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
D +L AA+ GD+ VK++ + ++ + + R SVV LL++
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD- 71
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
+ K++ G PLH A GH+ + ++L+ H ++ TPL AA +G +
Sbjct: 72 -VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICK 129
Query: 193 ELL 195
LL
Sbjct: 130 LLL 132
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 142 FDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 199
F PLH AA +G + I ++LL H DP+ G TPL G T + +LL D
Sbjct: 113 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG---NTPL-DLVKDGDTD-IQDLLRGDA 167
Query: 200 GLLEISR 206
LL+ ++
Sbjct: 168 ALLDAAK 174
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + + D+ G T L++A E+V++LL+ + A V D
Sbjct: 21 AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 276 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 330
G T LH+A EI E+L +VNA + KTA DI+ G +E+ +EI
Sbjct: 79 IGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI 131
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
TPL A GH +V E+L K+G + + G LH AA GH+++ + LL +
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV- 106
Query: 237 RRTDKKGQTALHMAVKGQSCEVVKLL 262
DK G+TA +++ + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K+ G PL++A GH IV+VLL + ++ TPL AA GH + E+L
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG-FTPLHLAAFIGHLEIA-EVLL 100
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
K G + GK A + G+ D+ + L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 177 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
TP +AA + +++LL +D ++ NG+ AL F A G V+ L L
Sbjct: 47 TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
R + G TALHMA EVV+ L+E A I + D+ G TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298
D+ G+TAL S + V+LL EA A + + G TALH+A R E+V L+
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 299 L 299
L
Sbjct: 133 L 133
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PLH AA ++V+ LL H + PL +A + GH V ELL K G ++
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVN 104
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKL 261
++ LH AA +G ++ K LL DP + ++ G T L + G + ++
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQD 159
Query: 262 LLEADAAI 269
LL DAA+
Sbjct: 160 LLRGDAAL 167
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
LHFAA V VV+ LL + + DK G LH A EV +LL++ A+V +
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNV 105
Query: 273 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 317
D + T LH A K + EI LL + RD T LD+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDL 149
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 75 DTELHLAAQRGDLGAVKQI--LYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE 132
D +L AA+ GD+ VK++ + ++ + + R SVV LL++
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD- 69
Query: 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 192
+ K++ G PLH A GH+ + ++L+ H ++ TPL AA +G +
Sbjct: 70 -VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 193 ELL 195
LL
Sbjct: 128 LLL 130
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 177 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235
TP +AA + +++LL +D ++ NG+ AL F A G V+ L L
Sbjct: 46 TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284
R + G TALHMA EVV+ L+E A I + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 240 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
D+ G+TAL S + V+LL EA A + + G TALH+A R E+V L+ L
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
R +V LL++ + K++ G PLH A GH+ + ++LL H ++ T
Sbjct: 70 RVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFT 126
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 237
PL AA++ V + LLS G + +GK+A VD ++ P+L
Sbjct: 127 PLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSA---------VD-----MAPTPELRE 171
Query: 238 R--TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH--VATRKKRTEIV 293
R + KG + L A + +V K L A I + TALH VA+ + + V
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 294 TELLSLPDTNVNALTRDHKTALDIA 318
ELL NVN +D T L +A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVA 254
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQ 234
TPL AA R H V+ E+L K G + S G+ ALH AA GH+ + LLS DP
Sbjct: 249 TPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 235 L 235
+
Sbjct: 308 I 308
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 25/178 (14%)
Query: 210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
K+ L AAR G+ + + ALL+ +D + T LH+A +V+LLL+ A
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGAD 83
Query: 270 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE 329
V DK G LH A E VTELL VN A+D+ + P E AS+
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYE-VTELLLKHGACVN--------AMDLWQFTPLHEAASK 134
Query: 330 --IKDC-----------LARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTN 374
++ C L C A ++ P ELR+ +T K H+ L+ R +
Sbjct: 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDM-APTPELRERLTYEFKG-HSLLQAAREAD 190
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 191
+ + + GF PL A+ G V+ LL+ DP + + L A+T G+T +V
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 192 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251
LL +D + I NG L +A HV V+ALL++ L D G T + +AV
Sbjct: 86 GLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAI 269
++H A QG +D +K L K L + D++G T L A E V+ LLE AD I
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 270 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
+ K +AL +A+ T+IV LL D ++N + T L
Sbjct: 65 LA---KERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPL 106
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283
V+ + + L +TD+ G+TALH+A + + K LLEA +A + D G T LH
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 321
A + LL T+++A D T L +A L
Sbjct: 62 AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARL 99
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
+V+++ + + L + G+ ALH AAR D K LL A D G+T LH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLH 60
Query: 249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 308
AV + V ++LL A + G T L +A R ++ +L++ +VNA+
Sbjct: 61 AAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN-SHADVNAVD 119
Query: 309 RDHKTAL 315
K+AL
Sbjct: 120 DLGKSAL 126
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
RS LL+ S + ++ G PLH A + Q+LL + + T
Sbjct: 34 RSDAAKRLLEASADAXI--QDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTT 91
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDP 233
PL+ AA ++ +L++ + + GK+ALH+AA +VD LL +KD
Sbjct: 92 PLILAARLALEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDM 150
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
Q + K +T L +A + S E K+LL+
Sbjct: 151 Q-----NNKEETPLFLAAREGSYETAKVLLD 176
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 177 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 236
+PL+ AA +++LL +G + + G+ ALH AA +++ L+ P+L
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 237 RRTDK----KGQTALHMAVKGQSCEVVKLLLEADAAI 269
+GQTALH+AV Q+ +V+ LL A++
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
++ L AA++ V + LL + + G+TALH+A + E +L+EA +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 270 VMLPDKF----GNTALHVATRKKRTEIVTELLS 298
V P G TALH+A + +V LL+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKK------------GQTALHMAVKGQSC 256
G+ ALH A +V++V+ALL++ ++ R G+ L A S
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134
Query: 257 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299
E+V+LL+E A I D GNT LH+ + ++ +L
Sbjct: 135 EIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNL 176
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 172 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
GP TPL+ A+ G AV+++ + + L + G+ ALH AAR
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
RS LL+ S + ++ G PLH A + Q+L+ + + T
Sbjct: 69 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDP 233
PL+ AA ++ +L++ + + GK+ALH+AA +VD LL +KD
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
Q + + +T L +A + S E K+LL+
Sbjct: 186 Q-----NNREETPLFLAAREGSYETAKVLLD 211
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 172 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
GP TPL+ A+ G AV+++ + + L + G+ ALH AAR
Sbjct: 8 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 67
Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 68 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 127 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
RS LL+ S + ++ G PLH A + Q+L+ + + T
Sbjct: 70 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDP 233
PL+ AA ++ +L++ + + GK+ALH+AA +VD LL +KD
Sbjct: 128 PLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDM 186
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
Q + + +T L +A + S E K+LL+
Sbjct: 187 Q-----NNREETPLFLAAREGSYETAKVLLD 212
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
+ + ++GG L+ ++G ALH+AA D +K LL K L ++ G+TAL +A K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 249
Query: 253 GQSCEVVKLLLEADAAIVMLP 273
E +LL +A A P
Sbjct: 250 KHHKECEELLEQAQAGTFAFP 270
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234
N TPL+ A G +++L+ ++ LE G AL +A + + + + LLSK
Sbjct: 35 NRTPLMVACMLGMENAIDKLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN 93
Query: 235 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF--GNTALHVATRKKRTEI 292
+ + D G+T L ++ E+ LLE A + D+ G T L VA++ R+EI
Sbjct: 94 VNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANV---NDRNLEGETPLIVASKYGRSEI 149
Query: 293 VTELLSL 299
V +LL L
Sbjct: 150 VKKLLEL 156
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 203
PL +A + G + L+++ L + +T L+ A + +LLSK G +
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVN 95
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
+GK L ++ G+ ++ LL + R + +G+T L +A K E+VK LL
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLL 154
Query: 264 EADAAI 269
E A I
Sbjct: 155 ELGADI 160
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
AAR G D V+ L++ + + DK G T LH+A + E+V++LL+A A V DK
Sbjct: 9 AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDK 66
Query: 276 FGNTALHVA 284
FG TA ++
Sbjct: 67 FGKTAFDIS 75
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 243 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302
G+ L A GQ EV +L A+ A V DK G T LH+A R+ EIV E+L
Sbjct: 3 GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 303 NVNALTRDHKTALDIA 318
+VNA + KTA DI+
Sbjct: 60 DVNAQDKFGKTAFDIS 75
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L+ AA G V L++ +G + +G LH AAR+GH+++V+ LL +
Sbjct: 6 LLEAARAGQDDEVRILMA-NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NA 63
Query: 239 TDKKGQTALHMAVKGQSCEVVKLLLEA 265
DK G+TA +++ + ++ ++L +A
Sbjct: 64 QDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLL 161
K++ G+ PLH+AA +GH IV+VLL
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL 55
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283
V+ + + L +TD+ G+TALH+A + + K LLEA +A + D G T LH
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 64
Query: 284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 321
A + L+ T+++A D T L +A L
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Query: 189 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 248
AV+++ + + L + G+ ALH AAR D K LL A D G+T LH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH 63
Query: 249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 308
AV + V ++L+ A + G T L +A R ++ +L++ +VNA+
Sbjct: 64 AAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVD 122
Query: 309 RDHKTAL 315
K+AL
Sbjct: 123 DLGKSAL 129
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
RS LL+ S + ++ G PLH A + Q+L+ + + T
Sbjct: 37 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDP 233
PL+ AA ++ +L++ + + GK+ALH+AA +VD LL +KD
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
Q + + +T L +A + S E K+LL+
Sbjct: 154 Q-----NNREETPLFLAAREGSYETAKVLLD 179
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 193 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252
+ + ++GG L+ ++G ALH+AA D +K LL K L ++ G+TAL +A K
Sbjct: 210 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 268
Query: 253 GQSCEVVKLLLEADAAIVMLP 273
E +LL +A A P
Sbjct: 269 KHHKECEELLEQAQAGTFAFP 289
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231
G NATPL+ A T ++ + E L ++G + + S G+ LH A GH + L +
Sbjct: 232 GQDNATPLIQA-TAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR 290
Query: 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
L R D +G+ L +A++ + ++V LL
Sbjct: 291 GADLGAR-DSEGRDPLTIAMETANADIVTLL 320
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 126 LKYSTKEGLTRKNRSGFDPLHIA-----AVQGHHAIVQVLLDH--DPSLSQTTGPSNATP 178
L+ + E + R F+PL +A +++G +VQ ++ DPSL G T
Sbjct: 17 LRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG---ITA 73
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 238
L +A GHT +V + L + G + + S+G LH AA +V V K L+ +
Sbjct: 74 LHNAVCAGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 239 TDKKGQTA 246
T QTA
Sbjct: 133 TYSDMQTA 140
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
+ G ALH A GH ++VK L+ + D G T LH A + +V K L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 264 EADAAIVML 272
E+ AA+ +
Sbjct: 124 ESGAAVFAM 132
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
L +++G+ V +++ E D LP+ G TALH A TEIV L+ NVNA
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNA 98
Query: 307 LTRDHKTALDIA 318
D T L A
Sbjct: 99 ADSDGWTPLHCA 110
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 126 LKYSTKEGLTRKNRSGFDPLHI---AAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLV 180
L+ + E + R F+PL + ++++G +VQ ++ DPSL G T L
Sbjct: 19 LRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG---ITALH 75
Query: 181 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD 240
+A GHT +V + L + G + + S+G LH AA +V V K L+ + T
Sbjct: 76 NAVCAGHTEIV-KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134
Query: 241 KKGQTA 246
QTA
Sbjct: 135 SDMQTA 140
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 263
+ G ALH A GH ++VK L+ + D G T LH A + +V K L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 264 EADAAIVML 272
E+ AA+ +
Sbjct: 124 ESGAAVFAM 132
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 306
L +++G+ V +++ E D LP+ G TALH A TEIV L+ NVNA
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDP--SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNA 98
Query: 307 LTRDHKTALDIA 318
D T L A
Sbjct: 99 ADSDGWTPLHCA 110
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 81 AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNELLKYSTKEGLTR 136
AA RGD+ V+++L+ ++V + F ++ +++ ELLK +
Sbjct: 15 AAARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV-- 69
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ SG P+H AA G ++VL++H ++ G + A P+ A GHTAVV+ L +
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAA 128
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
+ L + G L A ++G D+V L
Sbjct: 129 ESD--LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
G TA+ ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 52 GSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGAL 109
Query: 246 ALHMAVK-GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
+H+AV+ G + V L E+D + D G T L +A ++ ++V
Sbjct: 110 PIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLV 155
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH---FAARQGHVDVVKALLSKDPQL 235
L AA RG V LL ++ + GK AL F + ++++K S + Q
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 70
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
D G + +H A + + +K+L+E A V +PD G +H+A ++ T +V+
Sbjct: 71 ----DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 125
Query: 296 L 296
L
Sbjct: 126 L 126
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 172 GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218
GP TPL+ A+ G AV+++ + + L + G ALH AA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAA 66
Query: 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278
D K LL A D G+T LH AV + V ++L+ A + G
Sbjct: 67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315
T L +A R ++ +L++ +VNA+ K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 12/151 (7%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 177
RS LL+ S + ++ G PLH A + Q+L+ + + T
Sbjct: 69 RSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
Query: 178 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDP 233
PL+ AA ++ +L++ + + GK+ALH+AA +VD LL +KD
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVD-DLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185
Query: 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE 264
Q + + +T L +A + S E K+LL+
Sbjct: 186 Q-----NNREETPLFLAAREGSYETAKVLLD 211
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 81 AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNELLKYSTKEGLTR 136
AA RGD+ V+++L+ ++V + F ++ +++ ELLK +
Sbjct: 9 AAARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV-- 63
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
++ SG P+H AA G ++VL++H ++ G + A P+ A GHTAVV+ L +
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAA 122
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228
+ L + G L A ++G D+V L
Sbjct: 123 ESD--LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
G TA+ ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 46 GSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGAL 103
Query: 246 ALHMAVK-GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293
+H+AV+ G + V L E+D + D G T L +A ++ ++V
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLV 149
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 179 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH---FAARQGHVDVVKALLSKDPQL 235
L AA RG V LL ++ + GK AL F + ++++K S + Q
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ- 64
Query: 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295
D G + +H A + + +K+L+E A V +PD G +H+A ++ T +V+
Sbjct: 65 ----DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSF 119
Query: 296 L 296
L
Sbjct: 120 L 120
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 117 IRSSVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 175
+++ ++E+ Y K E + R G PLH AA G I++ LL ++ +
Sbjct: 10 LKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHH 68
Query: 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 229
TPL+SA GH + V LLSK G + +G AL Q +KALL
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTALEATDNQA----IKALL 117
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA- 267
G+ LH+AA G +++++ LL K + DK T L AV VKLLL A
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 268 AIVMLPDKFGNTAL 281
V PD G TAL
Sbjct: 94 KTVKGPD--GLTAL 105
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 203 EISRSNG----KNALHFAAR---QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 255
+I +NG + ALH A R + + +V L+ L ++T KG TALH +
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDN 217
Query: 256 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR---TEIVTELLS 298
E +KLLL A+I + ++ G T L +A R K E++T+ LS
Sbjct: 218 AECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 102 VGNLSGAEFDTEVAEIRSSVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVL 160
+G++ EF + +++ ++E+ Y K E + R G PLH AA G I++ L
Sbjct: 3 LGSMCDKEF---MWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59
Query: 161 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220
L ++ + TPL+SA GH + V LLSK G + +G A Q
Sbjct: 60 LLKGADIN-APDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQA 117
Query: 221 HVDVVKALL 229
+KALL
Sbjct: 118 ----IKALL 122
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 267
G+ LH+AA G +++++ LL K + DK T L AV VKLLL A
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGFLDTLQTLLENQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 273 PDKFGNTALHVATRKKRTEIVT 294
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 232 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
+P++ARR D+ G +H A + + ++ LLE + A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPL 107
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 318
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 35/126 (27%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K+R+GF +H AA G +Q LL++ ++
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVN---------------------------- 97
Query: 197 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 256
I + G LH AA++GH+ VV+ L+ + KG TA +A
Sbjct: 98 -------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150
Query: 257 EVVKLL 262
EVV L+
Sbjct: 151 EVVSLM 156
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G +H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVT 294
V + G+TA +A R E+V+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 232 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 318
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
I + G LH AA++GH+ VV+ L+ + KG TA +A EVV L+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 272
+H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+ V
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 273 PDKFGNTALHVATRKKRTEIVT 294
+ G+TA +A R E+V+
Sbjct: 133 RNHKGDTACDLARLYGRNEVVS 154
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 232 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 318
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
I + G LH AA++GH+ VV+ L+ + KG TA +A EVV L+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G+ ALH+AA+ + +VK L+ + + D+ G+T + +A + EVV L++ A+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 269 IVMLPDKFGNTALHVATRKKRTEIV 293
+ + D +TA +A IV
Sbjct: 339 VEAV-DATDHTARQLAQANNHHNIV 362
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 199 GGLLEISRSNGKNALHFAARQGHVDVV---KALLSK----DPQLARRTDK---KGQTALH 248
G + E+ R NG AL A D V K L+ K D A R D KG+TALH
Sbjct: 226 GDIEELDR-NGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284
Query: 249 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 308
A + + +VK L+ + D+ G T + +A ++ R E+V L+ +V A+
Sbjct: 285 YAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ-GASVEAVD 343
Query: 309 RDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 341
TA +A+ + I D RC R
Sbjct: 344 ATDHTARQLAQ----ANNHHNIVDIFDRCRPER 372
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G +H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVT 294
V + G+TA +A R E+V+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 232 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 318
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
I + G LH AA++GH+ VV+ L+ + KG TA +A EVV L+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 196
K+R+GF +H AA G +Q LL+ ++ N PL AA GH VV E L
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGN-LPLHLAAKEGHLRVV-EFLV 123
Query: 197 K 197
K
Sbjct: 124 K 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 209 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268
G +H AAR G +D ++ LL + D +G LH+A K VV+ L++ A+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 269 IVMLPDKFGNTALHVATRKKRTEIVT 294
V + G+TA +A R E+V+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVS 154
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Query: 232 DPQLARR----------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281
+P++ARR D+ G +H A + + ++ LLE A V + D GN L
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPL 107
Query: 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHK--TALDIA 318
H+A ++ +V L+ +NV R+HK TA D+A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACDLA 144
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262
I + G LH AA++GH+ VV+ L+ + KG TA +A EVV L+
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 102/273 (37%), Gaps = 82/273 (30%)
Query: 75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL 134
DT LH+A +G+L AV +++ G E D + N L +
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQ------GGRELD---------IYNNLRQT------ 48
Query: 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 194
PLH+A + TT PS VV L
Sbjct: 49 ---------PLHLAVI-------------------TTLPS---------------VVRLL 65
Query: 195 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL-SKDPQL----ARRTDKKGQTALHM 249
++ + + R +G+ A H A ++ALL S P AR D G TALH+
Sbjct: 66 VTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD--GLTALHV 122
Query: 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309
AV + E V+LLLE A I + K G + L A +V +LL NVNA
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV-QLLLQHGANVNAQMY 181
Query: 310 DHKTALDIAEG---LP------SSEEASEIKDC 333
+AL A G LP S S +K+C
Sbjct: 182 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 40/202 (19%)
Query: 135 TRKNRSGFDPLHIAAVQGH----HAIVQVL------LDHDPSLSQT--------TGPSNA 176
TR + G PLHIA VQG+ H +V + LD +L QT T PS
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 177 TPLVSAAT-------------------RGHTAVVNELLSKDGGLLEISRSN--GKNALHF 215
LV+A R T + L S G L++ N G ALH
Sbjct: 63 RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 275
A + V+ LL + + K G++ L AV+ S +V+LLL+ A V
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMY 181
Query: 276 FGNTALHVATRKKRTEIVTELL 297
G++ALH A+ + +V L+
Sbjct: 182 SGSSALHSASGRGLLPLVRTLV 203
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 53/177 (29%)
Query: 170 TTGPSNATP-------LVSAATRGHTAVVNELLSKDGGLLEISRSNGK---NALHFAARQ 219
T+ PS P L S +RG V E L+ GLLE R N K ++ +
Sbjct: 3 TSAPSQQEPDRFDRDRLFSVVSRG----VPEELT---GLLEYLRWNSKYLTDSAYTEGST 55
Query: 220 GHVDVVKALL-------------------SKDPQL---ARRTDK--KGQTALHMAVKGQS 255
G ++KA+L S +P+ A+ TD+ +G +ALH+A++ +S
Sbjct: 56 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 115
Query: 256 CEVVKLLLEADAAIVM------------LPDKFGNTALHVATRKKRTEIVTELLSLP 300
+ VKLL+E A + + FG L +A K+ ++VT LL P
Sbjct: 116 LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 172
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 236 ARRTDK--KGQTALHMAVKGQSCEVVKLLLEADAAIVM------------LPDKFGNTAL 281
A+ TD+ +G +ALH+A++ +S + VKLL+E A + + FG L
Sbjct: 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPL 140
Query: 282 HVATRKKRTEIVTELLSLP 300
+A K+ ++VT LL P
Sbjct: 141 SLAACTKQWDVVTYLLENP 159
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
G AV ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 54 GSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSL 111
Query: 246 ALHMAVKGQSCEVVKLL 262
+H+A++ VV L
Sbjct: 112 PIHLAIREGHSSVVSFL 128
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 81 AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNELLKYSTKEGLTR 136
AA RGD+ V+++L+ ++V + F ++ +V ELLK +
Sbjct: 17 AAARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNV-- 71
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV--- 191
++ SG P+H AA G ++VL++H D + +TG + P+ A GH++VV
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHLAIREGHSSVVSFL 128
Query: 192 ---NELLSKDG-GL--LEISRSNGKNALHFAARQGHV 222
++L +D GL LE++R G L QGH+
Sbjct: 129 APESDLHHRDASGLTPLELARQRGAQNL-MDILQGHM 164
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 245
G AV ELL K G + ++G + +H AAR G +D +K L+ + D G
Sbjct: 52 GSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSL 109
Query: 246 ALHMAVKGQSCEVVKLL 262
+H+A++ VV L
Sbjct: 110 PIHLAIREGHSSVVSFL 126
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 81 AAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEI----RSSVVNELLKYSTKEGLTR 136
AA RGD+ V+++L+ ++V + F ++ +V ELLK +
Sbjct: 15 AAARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMMFGSPAVALELLKQGASPNV-- 69
Query: 137 KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV--- 191
++ SG P+H AA G ++VL++H D + +TG + P+ A GH++VV
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTG---SLPIHLAIREGHSSVVSFL 126
Query: 192 ---NELLSKDG-GL--LEISRSNGKNALHFAARQGHV 222
++L +D GL LE++R G L QGH+
Sbjct: 127 APESDLHHRDASGLTPLELARQRGAQNL-MDILQGHM 162
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 213 LHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 270
+H AAR+G D V+ L+ P + R G TALH+A K + K L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLASVGEVHS 80
Query: 271 MLPDKFGNTALHVATRKKRTEIVTELL 297
+ G +H+A +T++V L+
Sbjct: 81 LW---HGQKPIHLAVXANKTDLVVALV 104
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 213 LHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269
LH AA +VK LL D Q D KG TAL+ AV + + VKL ++ + +
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDSQF----DDKGNTALYYAVDSGNXQTVKLFVKKNWRL 121
Query: 270 VMLPDKFGNTALHVATRKKRTEIVTELLS-LPDT 302
T+ + A IV+ LS +P T
Sbjct: 122 XFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPST 155
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 68/154 (44%), Gaps = 32/154 (20%)
Query: 179 LVSAATRG---HTAVVNELLSKDGGLLEISR----SNGKNALHFAA---RQGHVDVVKAL 228
L +A +RG A + E LSK L S S GK L A + G + L
Sbjct: 11 LFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPL 70
Query: 229 L-----SKDPQL---ARRTDK--KGQTALHMAVKGQSCEVVKLLLEADA-----AIVMLP 273
L S +PQ A+ TD +G +ALH+A++ +S + VKLL+E A A
Sbjct: 71 LQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFF 130
Query: 274 DK-------FGNTALHVATRKKRTEIVTELLSLP 300
K FG L +A K+ ++V+ LL P
Sbjct: 131 QKGQGTCFYFGELPLSLAACTKQWDVVSYLLENP 164
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 8/131 (6%)
Query: 100 QMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 159
M+G S A T A + V +LL+ NR G P+ + + G + ++
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL--NRFGRRPIQVM-MMGSAQVAEL 62
Query: 160 LLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAA 217
LL H + + P+ AA G T VV L + G L++ + G+ + A
Sbjct: 63 LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV---LHRAGARLDVCDAWGRLPVDLAE 119
Query: 218 RQGHVDVVKAL 228
QGH D+ + L
Sbjct: 120 EQGHRDIARYL 130
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 201 LLEISRSNGKNALHFAARQGHVDVVKALLS--KDPQLARRT 239
+L SNG L+ AAR G++ +V ALL DP +A ++
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS 315
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 208 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLE 264
G ALH +A +G DV +ALL K DP L + H+ + KG ++ L+E
Sbjct: 106 EGWAALHSSAERGDWDVAEALLEKMDDPSLPLEDFLRFDAEFHVVISKGAENPLISTLME 165
Query: 265 A 265
A
Sbjct: 166 A 166
>pdb|1JCM|P Chain P, Trpc Stability Mutant Containing An Engineered Disulphide
Bridge And In Complex With A Cdrp-Related Substrate
Length = 259
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA-IVQVLLDHDPSLSQTTGPSNA 176
R++ + E K S +G+ R + FDP IAA+ H+A + VL D G N
Sbjct: 47 RTAFILECKKASPSKGVIRDD---FDPARIAAIYKHYASAISVLTDE----KYFQGSFNF 99
Query: 177 TPLVS 181
P+VS
Sbjct: 100 LPIVS 104
>pdb|1PII|A Chain A, Three-Dimensional Structure Of The Bifunctional Enzyme
Phosphoribosylanthranilate Isomerase:
Indoleglycerolphosphate Synthase From Escherichia Coli
Refined At 2.0 Angstroms Resolution
Length = 452
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 118 RSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA-IVQVLLDHDPSLSQTTGPSNA 176
R++ + E K S +G+ R + FDP IAA+ H+A + VL D G N
Sbjct: 47 RTAFILECKKASPSKGVIRDD---FDPARIAAIYKHYASAISVLTDE----KYFQGSFNF 99
Query: 177 TPLVS 181
P+VS
Sbjct: 100 LPIVS 104
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 18/64 (28%)
Query: 220 GHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVVKLLLEA 265
G D + LL +AR+TD KGQTALH+A++ ++ +V LL+E
Sbjct: 68 GQNDTIALLLD----VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVEN 123
Query: 266 DAAI 269
A +
Sbjct: 124 GADV 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,579,277
Number of Sequences: 62578
Number of extensions: 465347
Number of successful extensions: 2128
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 434
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)