Query 008358
Match_columns 568
No_of_seqs 597 out of 3641
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 00:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008358.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008358hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 3.1E-40 1.1E-44 349.0 32.7 291 67-367 73-396 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.9E-40 1.3E-44 348.3 32.0 293 66-369 6-299 (437)
3 1wdy_A 2-5A-dependent ribonucl 100.0 8.7E-40 3E-44 324.0 29.9 262 73-344 4-282 (285)
4 4g8k_A 2-5A-dependent ribonucl 100.0 5.9E-39 2E-43 327.4 27.7 281 74-369 25-322 (337)
5 3b7b_A Euchromatic histone-lys 100.0 1.2E-38 4E-43 308.0 26.4 231 68-336 5-235 (237)
6 2fo1_E LIN-12 protein; beta-ba 100.0 8E-40 2.7E-44 338.7 18.0 266 67-341 87-372 (373)
7 3d9h_A CDNA FLJ77766, highly s 100.0 8.2E-39 2.8E-43 318.6 23.8 255 71-340 12-279 (285)
8 1yyh_A HN1;, notch 1, ankyrin 100.0 7E-39 2.4E-43 313.3 21.4 242 67-337 3-245 (253)
9 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-38 9.6E-43 323.0 26.3 281 67-358 17-323 (351)
10 1k1a_A B-cell lymphoma 3-encod 100.0 3.4E-38 1.2E-42 305.2 24.3 233 68-338 3-239 (241)
11 2xai_A ASB-9, ankyrin repeat a 100.0 1.1E-38 3.9E-43 313.4 20.5 240 73-322 2-249 (261)
12 1oy3_D Transcription factor in 100.0 2.9E-38 9.9E-43 313.1 21.1 250 68-322 3-269 (282)
13 3aji_A 26S proteasome non-ATPa 100.0 2.3E-37 8E-42 297.6 25.8 227 71-339 3-229 (231)
14 2dzn_A Probable 26S proteasome 100.0 3.5E-37 1.2E-41 295.6 23.6 212 74-320 2-217 (228)
15 3ljn_A Hypothetical protein; a 100.0 4.4E-38 1.5E-42 324.4 16.3 250 65-322 11-300 (364)
16 4b93_B Ankyrin repeat domain-c 100.0 4.5E-38 1.6E-42 310.3 15.5 221 71-322 8-229 (269)
17 1wdy_A 2-5A-dependent ribonucl 100.0 6.2E-36 2.1E-40 296.2 28.4 234 71-309 36-284 (285)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-36 3.6E-41 297.8 19.0 232 133-371 2-246 (253)
19 2xai_A ASB-9, ankyrin repeat a 100.0 6.9E-36 2.3E-40 293.5 24.4 220 106-340 3-222 (261)
20 3eu9_A Huntingtin-interacting 100.0 1.5E-35 5E-40 286.0 23.4 230 70-341 5-236 (240)
21 2fo1_E LIN-12 protein; beta-ba 100.0 1.8E-36 6.2E-41 313.5 17.2 278 76-370 68-368 (373)
22 1oy3_D Transcription factor in 100.0 1.5E-35 5.1E-40 293.5 22.4 247 105-359 8-269 (282)
23 3utm_A Tankyrase-1; tankyrase, 100.0 4.3E-35 1.5E-39 299.4 26.3 258 104-371 22-303 (351)
24 2f8y_A Notch homolog 1, transl 100.0 3E-35 1E-39 281.2 21.7 213 120-342 5-218 (223)
25 3d9h_A CDNA FLJ77766, highly s 100.0 5E-35 1.7E-39 291.2 23.8 243 103-356 12-263 (285)
26 1s70_B 130 kDa myosin-binding 100.0 9.2E-36 3.1E-40 298.1 17.3 236 72-320 38-274 (299)
27 3b7b_A Euchromatic histone-lys 100.0 2.3E-34 7.8E-39 277.8 26.2 219 133-359 3-221 (237)
28 3ljn_A Hypothetical protein; a 100.0 2.5E-35 8.6E-40 303.8 20.4 231 100-341 14-270 (364)
29 1ikn_D Protein (I-kappa-B-alph 100.0 4.4E-36 1.5E-40 290.0 11.5 220 68-321 2-229 (236)
30 1k1a_A B-cell lymphoma 3-encod 100.0 1.4E-34 4.8E-39 279.8 21.6 226 134-368 2-236 (241)
31 4g8k_A 2-5A-dependent ribonucl 100.0 6.3E-34 2.2E-38 290.1 27.0 254 107-370 26-295 (337)
32 2dzn_A Probable 26S proteasome 100.0 1E-33 3.5E-38 271.4 22.8 210 141-357 2-217 (228)
33 3aji_A 26S proteasome non-ATPa 100.0 1.9E-33 6.6E-38 270.2 24.2 223 138-368 3-225 (231)
34 3kea_A K1L; tropism, ANK repea 100.0 4.7E-34 1.6E-38 284.2 20.5 225 67-344 24-250 (285)
35 1sw6_A Regulatory protein SWI6 100.0 4.7E-35 1.6E-39 297.3 13.4 239 64-321 42-326 (327)
36 3hra_A Ankyrin repeat family p 100.0 4E-33 1.4E-37 262.0 24.0 192 72-298 3-199 (201)
37 2rfa_A Transient receptor pote 100.0 1.2E-33 4.1E-38 272.0 20.8 197 73-305 2-224 (232)
38 2f8y_A Notch homolog 1, transl 100.0 4.5E-33 1.5E-37 266.1 24.4 198 69-304 20-217 (223)
39 2rfa_A Transient receptor pote 100.0 1E-32 3.5E-37 265.4 20.9 195 140-342 2-224 (232)
40 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-33 3.9E-38 273.0 13.8 200 136-342 3-211 (236)
41 1s70_B 130 kDa myosin-binding 100.0 5.5E-33 1.9E-37 277.9 17.9 214 138-359 37-276 (299)
42 3kea_A K1L; tropism, ANK repea 100.0 2.5E-33 8.6E-38 278.9 15.0 190 72-309 60-252 (285)
43 3hra_A Ankyrin repeat family p 100.0 5.9E-32 2E-36 254.0 22.0 194 139-338 3-201 (201)
44 2pnn_A Transient receptor pote 100.0 4.6E-33 1.6E-37 275.0 13.5 216 68-316 7-272 (273)
45 4b93_B Ankyrin repeat domain-c 100.0 5.7E-33 1.9E-37 273.8 14.1 214 136-357 6-227 (269)
46 3eu9_A Huntingtin-interacting 100.0 1.6E-31 5.5E-36 257.6 22.5 229 134-370 2-232 (240)
47 4gpm_A Engineered protein OR26 100.0 1.4E-31 4.8E-36 244.4 20.0 160 143-307 6-165 (169)
48 2etb_A Transient receptor pote 100.0 4.5E-32 1.6E-36 265.2 15.7 194 73-298 1-242 (256)
49 2etb_A Transient receptor pote 100.0 3.5E-32 1.2E-36 266.0 13.2 196 140-342 1-248 (256)
50 2pnn_A Transient receptor pote 100.0 7.5E-32 2.6E-36 266.3 14.6 200 134-340 6-258 (273)
51 4gpm_A Engineered protein OR26 100.0 3E-30 1E-34 235.6 19.9 157 76-269 6-162 (169)
52 4hbd_A KN motif and ankyrin re 100.0 2.2E-30 7.6E-35 256.4 18.4 191 108-301 78-274 (276)
53 3jxi_A Vanilloid receptor-rela 100.0 3.4E-31 1.2E-35 259.4 11.9 198 138-342 2-252 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 7.8E-31 2.7E-35 256.9 14.0 201 71-304 2-251 (260)
55 3v30_A DNA-binding protein rfx 100.0 9.9E-30 3.4E-34 232.8 16.0 170 141-314 2-171 (172)
56 1sw6_A Regulatory protein SWI6 100.0 1.2E-30 4.1E-35 264.9 8.1 259 74-356 23-324 (327)
57 2rfm_A Putative ankyrin repeat 100.0 5.3E-29 1.8E-33 232.3 17.0 161 134-298 28-188 (192)
58 4hbd_A KN motif and ankyrin re 100.0 1E-29 3.5E-34 251.6 12.7 193 141-339 76-274 (276)
59 1ihb_A P18-INK4C(INK6), cyclin 100.0 8.5E-29 2.9E-33 224.1 16.4 159 140-303 4-162 (162)
60 3v30_A DNA-binding protein rfx 100.0 1.7E-28 5.9E-33 224.5 17.5 170 74-280 2-171 (172)
61 3v31_A Ankyrin repeat family A 100.0 5E-28 1.7E-32 220.3 18.2 155 140-298 2-156 (167)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.3E-28 2.2E-32 220.3 18.9 157 138-298 11-167 (169)
63 2rfm_A Putative ankyrin repeat 100.0 5E-28 1.7E-32 225.7 17.3 166 64-266 25-190 (192)
64 1ihb_A P18-INK4C(INK6), cyclin 100.0 5.1E-28 1.8E-32 218.9 16.8 159 73-268 4-162 (162)
65 3f6q_A Integrin-linked protein 100.0 4.3E-28 1.5E-32 223.6 16.0 168 140-311 4-171 (179)
66 3v31_A Ankyrin repeat family A 100.0 1.1E-27 3.8E-32 218.0 17.8 161 73-270 2-162 (167)
67 1awc_B Protein (GA binding pro 100.0 1.4E-27 4.7E-32 214.2 17.6 151 141-296 2-152 (153)
68 2vge_A RELA-associated inhibit 100.0 5E-30 1.7E-34 246.5 0.7 185 134-325 14-202 (229)
69 3twr_A Tankyrase-2; ankyrin re 100.0 6.8E-28 2.3E-32 219.0 14.0 158 174-339 7-164 (165)
70 3twr_A Tankyrase-2; ankyrin re 99.9 9.3E-28 3.2E-32 218.1 14.3 161 137-302 4-164 (165)
71 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.5E-27 1.2E-31 215.4 17.8 161 170-338 9-169 (169)
72 3f6q_A Integrin-linked protein 99.9 4.7E-27 1.6E-31 216.6 18.3 165 173-344 3-167 (179)
73 1bd8_A P19INK4D CDK4/6 inhibit 99.9 8.1E-27 2.8E-31 209.7 16.5 153 141-298 2-154 (156)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.4E-28 1.2E-32 235.4 6.8 180 138-323 2-193 (239)
75 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.4E-28 4.9E-33 238.0 1.8 209 72-322 3-229 (239)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.7E-26 9.3E-31 206.2 16.6 153 175-336 2-154 (156)
77 1awc_B Protein (GA binding pro 99.9 4.2E-26 1.4E-30 204.5 17.5 150 75-262 3-152 (153)
78 2vge_A RELA-associated inhibit 99.9 1.4E-29 4.7E-34 243.4 -6.9 188 70-297 17-208 (229)
79 2aja_A Ankyrin repeat family p 99.9 1.1E-28 3.7E-33 253.7 -4.2 154 71-235 89-251 (376)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 2.8E-25 9.6E-30 199.9 11.3 144 171-319 8-152 (156)
81 2aja_A Ankyrin repeat family p 99.9 4.2E-27 1.4E-31 241.9 -2.3 242 76-342 67-346 (376)
82 1d9s_A Cyclin-dependent kinase 99.9 8.4E-25 2.9E-29 192.0 12.6 134 131-268 2-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 6.8E-25 2.3E-29 197.4 10.3 145 135-284 6-151 (156)
84 3t8k_A Uncharacterized protein 99.9 7.7E-25 2.6E-29 203.0 10.0 145 176-325 7-168 (186)
85 3t8k_A Uncharacterized protein 99.9 1.8E-25 6E-30 207.3 5.2 161 141-307 6-183 (186)
86 1d9s_A Cyclin-dependent kinase 99.9 2.1E-24 7.2E-29 189.4 10.9 129 169-302 6-135 (136)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1E-22 3.5E-27 175.3 16.1 126 140-268 1-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 7.4E-23 2.5E-27 179.5 13.6 125 139-266 12-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.4E-22 4.8E-27 174.4 14.7 126 174-303 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 7.8E-23 2.7E-27 179.3 12.7 124 172-298 11-134 (136)
91 2b0o_E UPLC1; arfgap, structur 99.9 6.6E-22 2.3E-26 197.7 16.3 141 140-289 150-298 (301)
92 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-22 5.8E-27 177.3 10.5 114 204-320 5-118 (137)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-22 4.5E-27 178.0 8.5 121 137-260 6-126 (137)
94 3ui2_A Signal recognition part 99.9 2.2E-22 7.5E-27 195.1 10.4 139 138-298 42-181 (244)
95 3deo_A Signal recognition part 99.9 2.6E-22 8.9E-27 185.5 10.3 139 138-298 41-180 (183)
96 3deo_A Signal recognition part 99.9 5.9E-22 2E-26 183.1 10.5 141 71-265 41-181 (183)
97 3ui2_A Signal recognition part 99.9 7.3E-22 2.5E-26 191.4 11.6 143 72-268 43-185 (244)
98 3ehr_A Osteoclast-stimulating 99.9 2.8E-22 9.4E-27 191.3 7.4 130 137-268 69-198 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 2.4E-21 8.3E-26 166.6 11.9 111 206-319 4-114 (123)
100 3ehr_A Osteoclast-stimulating 99.9 5.8E-22 2E-26 189.0 8.7 137 171-311 69-206 (222)
101 3aaa_C Myotrophin, protein V-1 99.8 1.9E-21 6.6E-26 167.2 10.1 110 173-285 5-114 (123)
102 2b0o_E UPLC1; arfgap, structur 99.8 2.7E-21 9.2E-26 193.3 11.2 139 175-323 151-298 (301)
103 1dcq_A PYK2-associated protein 99.8 1.6E-20 5.6E-25 185.4 15.0 195 137-341 62-264 (278)
104 1dcq_A PYK2-associated protein 99.8 7.1E-20 2.4E-24 180.8 19.0 191 70-268 62-263 (278)
105 3jue_A Arfgap with coiled-coil 99.8 1.1E-19 3.6E-24 186.1 13.2 145 174-321 198-347 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.7E-19 5.8E-24 193.2 14.2 125 142-268 133-265 (497)
107 3jue_A Arfgap with coiled-coil 99.8 1.7E-19 5.6E-24 184.6 13.0 129 205-340 195-326 (368)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.4E-19 8.2E-24 145.9 11.2 92 208-302 1-92 (93)
109 2l6b_A NR1C; ankyrin, consensu 99.8 8.5E-20 2.9E-24 154.8 8.6 109 204-315 4-112 (115)
110 3lvq_E ARF-GAP with SH3 domain 99.8 4.5E-19 1.5E-23 189.9 16.1 139 176-318 133-280 (497)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.8 9.7E-19 3.3E-23 142.3 12.1 92 140-233 1-92 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.7E-18 5.8E-23 146.7 9.3 108 136-246 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.5E-16 5.1E-21 133.7 10.0 93 202-296 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.6 6.5E-16 2.2E-20 129.7 10.0 93 134-228 17-109 (110)
115 2l2t_A Receptor tyrosine-prote 54.1 4.4 0.00015 26.5 1.0 28 501-528 7-34 (44)
116 2ks1_B Epidermal growth factor 50.4 3.7 0.00013 26.9 0.2 27 502-528 9-35 (44)
117 4ev6_A Magnesium transport pro 33.7 49 0.0017 32.2 5.5 38 475-512 280-320 (339)
118 2knc_B Integrin beta-3; transm 27.0 47 0.0016 24.7 3.0 24 502-525 9-32 (79)
119 1gp8_A Protein (scaffolding pr 26.9 42 0.0014 21.0 2.2 18 77-94 16-33 (40)
120 4a01_A Proton pyrophosphatase; 23.5 3.4E+02 0.012 29.2 9.7 58 470-527 357-426 (766)
121 2iub_A CORA, divalent cation t 23.1 76 0.0026 31.2 4.8 22 473-494 302-323 (363)
122 3mkq_B Coatomer subunit alpha; 22.8 2.5E+02 0.0084 24.4 7.4 130 75-230 9-139 (177)
123 2l8s_A Integrin alpha-1; trans 20.1 46 0.0016 22.7 1.6 25 501-525 7-31 (54)
124 2jp3_A FXYD domain-containing 20.0 54 0.0018 23.4 2.0 10 511-520 19-28 (67)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-40 Score=349.00 Aligned_cols=291 Identities=26% Similarity=0.344 Sum_probs=156.4
Q ss_pred hhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHH
Q 008358 67 KQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPL 145 (568)
Q Consensus 67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpL 145 (568)
.+..+..|.||||+|+..|+.+++++|++ +.+.+..+..+.++++.|+..++.++++.|++.+ .+.+..+..|.|||
T Consensus 73 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L 150 (437)
T 1n11_A 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE--ASQACMTKKGFTPL 150 (437)
T ss_dssp SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC--CCCcCCCCCCCCHH
Confidence 34455666666666666666666666665 3444444445555666666666666666665432 23344445555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC---------------------------
Q 008358 146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD--------------------------- 198 (568)
Q Consensus 146 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~--------------------------- 198 (568)
|+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++++
T Consensus 151 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 151 HVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 5555555555555555555554 344445555555555555555555555442
Q ss_pred -----CCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCC
Q 008358 199 -----GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP 273 (568)
Q Consensus 199 -----~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~ 273 (568)
+.+++..+..|.||||+|+..|+.+++++|++++++. +..|..|+||||+|+..|+.+++++|+++|++ ++.+
T Consensus 230 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~ 307 (437)
T 1n11_A 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDAT 307 (437)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCC
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCC
Confidence 2233444445555555555555555555555555444 44455555555555555555555555555555 4555
Q ss_pred CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHH
Q 008358 274 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR 353 (568)
Q Consensus 274 d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~ 353 (568)
|..|+||||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++ .+++++|+++|+..+.....+.+++.
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~ga~~~~~~~~g~t~l~ 382 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGH----TDIVTLLLKNGASPNEVSSDGTTPLA 382 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHCCh----HHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence 5555555555555555555555555 455555555555555555555443 24555555555555555555555555
Q ss_pred HHHHhhhhhhhhhH
Q 008358 354 KTVTQIKKDVHTQL 367 (568)
Q Consensus 354 ~~~~~~~~~~~~~l 367 (568)
.+......++.+.+
T Consensus 383 ~A~~~g~~~~~~~l 396 (437)
T 1n11_A 383 IAKRLGYISVTDVL 396 (437)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCcHHHHHHH
Confidence 55444444444333
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.9e-40 Score=348.29 Aligned_cols=293 Identities=27% Similarity=0.314 Sum_probs=256.1
Q ss_pred HhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358 66 VKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP 144 (568)
Q Consensus 66 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp 144 (568)
..+..++.|.||||.||..|+.++|++|++ +.+.+..+..+.++++.|+..|+.++++.|++. +.+++.+|..|+||
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTP 83 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCH
Confidence 345568899999999999999999999997 455666667788999999999999999999976 45688899999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHH
Q 008358 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 224 (568)
Q Consensus 145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~i 224 (568)
||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.++++.|+++ +...+..+..|.||||+|+..|+.++
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999999998 67888999999999999999999999998 45567778899999999999999999
Q ss_pred HHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358 225 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304 (568)
Q Consensus 225 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~ 304 (568)
+++|+++++++ +..+..|.||||+|+..|+.+++++|+++|++ ++..+.+|.||||+|+..|+.+++++|++ .|+++
T Consensus 162 v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~ 238 (437)
T 1n11_A 162 AELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSA 238 (437)
T ss_dssp HHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred HHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence 99999999987 77889999999999999999999999999998 78889999999999999999999999999 89999
Q ss_pred ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358 305 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ 369 (568)
Q Consensus 305 ~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 369 (568)
+..|..|.||||+|+..++. +++++|++.|+..+.....+.+++..++.....++.+.|-+
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 299 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHA----EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCH----HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999987654 78889999999888777888889998888777776665543
No 3
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.7e-40 Score=323.97 Aligned_cols=262 Identities=26% Similarity=0.347 Sum_probs=236.6
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhc-CCcccc-ccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYG-IDSQMV-GNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 150 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~-~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~ 150 (568)
+|.||||.|++.|+.+++++|++. .+.+.. +..+.++++.|+..++.++++.|++. +.+++.+|..|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHH
Confidence 466999999999999999999974 444444 45567899999999999999999976 56678889999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc----------CcCCChHHHHHHHcC
Q 008358 151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS----------RSNGKNALHFAARQG 220 (568)
Q Consensus 151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~tpLh~A~~~g 220 (568)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++++ .+++.. +..|.||||.|+..|
T Consensus 82 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 99999999999999998 678899999999999999999999999984 445554 778999999999999
Q ss_pred CHHHHHHHHcC-CCccccccCCCCCCHHHHHHhCCC----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358 221 HVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295 (568)
Q Consensus 221 ~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~ 295 (568)
+.+++++|++. +.++ +..|..|+||||.|+..++ .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 160 ~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 160 HVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp CHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999998 7766 7889999999999999999 9999999999999 88999999999999999999999999
Q ss_pred HhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 008358 296 LLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE 344 (568)
Q Consensus 296 Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~ 344 (568)
|++..|++++.+|.+|+||||+|+..++. +++++|+++|+..+..
T Consensus 238 Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~----~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 238 LLEQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCG 282 (285)
T ss_dssp HHHSSSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCCS
T ss_pred HHhccCCCccccCCCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCcc
Confidence 99978999999999999999999997654 7899999999986543
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.9e-39 Score=327.39 Aligned_cols=281 Identities=25% Similarity=0.307 Sum_probs=171.1
Q ss_pred CChHhHHHHHcCCHHHHHHHHh-cCCccccccC-CCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNL-SGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~-~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
|.|+||.||+.|++++|+.||+ +.+.+..+.. +.+|||+|+..++.++|+.||+.+ ++++.++..+.++++.++..
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--CchhhhccCCCchhHHHHhc
Confidence 3478888888888888888886 4455544443 567888888888888888888653 44555566666666666666
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----------ccCcCCChHHHHHHHcCC
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE----------ISRSNGKNALHFAARQGH 221 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~----------~~d~~g~tpLh~A~~~g~ 221 (568)
++..++..++..++++ +..|..|.||||+|+..|+.+++++|++++. +++ ..+..|.||||+|+..|+
T Consensus 103 ~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga-~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~ 180 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGA-NVNLRRKTKEDQERLRKGGATALMDAAEKGH 180 (337)
T ss_dssp TCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC-CTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred ccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCC-CcchhhccccccccccCCCCcHHHHHHHCCC
Confidence 6666666666666665 4556666666666666666666666665532 221 223456666666666666
Q ss_pred HHHHHHHHc-CCCccccccCCCCCCHHHHHHhCCC----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 222 VDVVKALLS-KDPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 222 ~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
.+++++|++ .|.++ +..|..|+|+||.++..+. .+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|
T Consensus 181 ~~~v~~LL~~~gad~-n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~L 258 (337)
T 4g8k_A 181 VEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRL 258 (337)
T ss_dssp HHHHHHHHHHSCCCT-TCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCCCc-CccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence 666666664 34444 5556666666665553222 2455666666666 556666666666666666666666666
Q ss_pred hcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhH
Q 008358 297 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ 369 (568)
Q Consensus 297 l~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 369 (568)
++..|+++|.+|.+|+||||+|+..++. +++++|+++|+..+... ++..++.....++.+.|-+
T Consensus 259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~----~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 259 LEQEHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HTSTTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCcccCcCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHH
Confidence 6545666666666666666666665442 55566666666554332 4555555555555554443
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.2e-38 Score=308.00 Aligned_cols=231 Identities=25% Similarity=0.332 Sum_probs=212.8
Q ss_pred hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358 68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI 147 (568)
Q Consensus 68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~ 147 (568)
+..+..|.||||.||..|+.+++++|++. +.+++..+..|+||||+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~ 50 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA----------------------------------GANIDTCSEDQRTPLME 50 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHT----------------------------------TCCTTCCCTTCCCHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHc----------------------------------CCCcCccCCCCCCHHHH
Confidence 45688999999999999999999999952 34567778899999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHH
Q 008358 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 227 (568)
Q Consensus 148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~ 227 (568)
|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++.+++..+..|.||||+|+..|+.+++++
T Consensus 51 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 129 (237)
T 3b7b_A 51 AAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999998 67889999999999999999999999999778888999999999999999999999999
Q ss_pred HHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 008358 228 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307 (568)
Q Consensus 228 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~ 307 (568)
|++.++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+
T Consensus 130 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~ 206 (237)
T 3b7b_A 130 LLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLK 206 (237)
T ss_dssp HHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC
T ss_pred HHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCcc
Confidence 99999987 77899999999999999999999999999999 88899999999999999999999999999 89999999
Q ss_pred cCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 008358 308 TRDHKTALDIAEGLPSSEEASEIKDCLAR 336 (568)
Q Consensus 308 d~~G~T~L~~A~~~~~~~~~~~i~~~L~~ 336 (568)
|.+|+||||+|+..++.....++.+.|.+
T Consensus 207 d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 207 NKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp CTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998776666666666554
No 6
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8e-40 Score=338.74 Aligned_cols=266 Identities=20% Similarity=0.249 Sum_probs=228.1
Q ss_pred hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccc-cCCCCchHHHHHhhhhHHHHHHhhh------cCcccccccCC
Q 008358 67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVG-NLSGAEFDTEVAEIRSSVVNELLKY------STKEGLTRKNR 139 (568)
Q Consensus 67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~-~~~~~~l~~a~~~~~~~~v~~Ll~~------~~~~~~~~~~~ 139 (568)
....+..|.||||.|+..|+ ++++.|+. .+.+..+ ..+.+++|+|+..++.++++.|+.. ..+.+++.+|.
T Consensus 87 ~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~-~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~ 164 (373)
T 2fo1_E 87 PTEPEPESPIKLHTEAAGSY-AITEPITR-ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164 (373)
T ss_dssp -------CCCHHHHHHHSSS-CCCSCCST-TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred ccCCCCCCccHHHHHhcCCc-hHHHHhcc-ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 34568889999999999554 77777764 3444445 5678999999999999888877642 45778999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CCccccCcCCChHHHHHH
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAA 217 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~--~~~~~~d~~g~tpLh~A~ 217 (568)
.|+||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|++++. .+++..|.+|.||||+|+
T Consensus 165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 165 DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 9999999999999999999999999998 6788999999999999999999999998742 567888999999999999
Q ss_pred HcC---CHHHHHHHHcCCCcccc-------ccCCCCCCHHHHHHhCCCHHHHHHHHHcC-CccccCCCCCCChHHHHHHH
Q 008358 218 RQG---HVDVVKALLSKDPQLAR-------RTDKKGQTALHMAVKGQSCEVVKLLLEAD-AAIVMLPDKFGNTALHVATR 286 (568)
Q Consensus 218 ~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~G~TpLh~A~~ 286 (568)
..+ +.+++++|++.++++.. ..|..|+||||+|+..|+.+++++|++.+ ++ ++.+|..|+||||+|+.
T Consensus 244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~ 322 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQ 322 (373)
T ss_dssp HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHH
T ss_pred HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHH
Confidence 998 89999999999988732 35779999999999999999999999987 66 89999999999999999
Q ss_pred cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358 287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 341 (568)
Q Consensus 287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 341 (568)
.|+.+++++|++ .|++++.+|..|+||||+|+..++. +++++|.++|+.+
T Consensus 323 ~g~~~iv~~Ll~-~gad~~~~d~~g~t~l~~A~~~g~~----~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 323 EGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHH----NIVDIFDRCRPER 372 (373)
T ss_dssp HTCHHHHHHHHH-TTCCSSCCCSSSCCHHHHHHHTTCH----HHHHHHHTTC---
T ss_pred cCCHHHHHHHHH-cCCCccCCCCCCCCHHHHHHHcCCH----HHHHHHHhcCccc
Confidence 999999999999 8999999999999999999998764 7889999888753
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=318.62 Aligned_cols=255 Identities=22% Similarity=0.243 Sum_probs=202.1
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhc------------CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccC
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYG------------IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKN 138 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~------------~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~ 138 (568)
...|.|+||+|+..|+.+.+..++.. ......+..+.++++.|+..++.++++.|++. +.+++.+|
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~ 89 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIIT 89 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEEC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcC
Confidence 35688999999999998888876532 11223345567899999999999999999975 56788999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218 (568)
Q Consensus 139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 218 (568)
..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+. +++. +.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQP-ESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSSC-SCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHH
Confidence 99999999999999999999999999998 6789999999999999999999999999844 4443 4569999999999
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
.|+.+++++|++.++++ +..|.+|+||||+|+..|+.+++++|++.|++ ++ .|..|+||||+|+..|+.+++++|++
T Consensus 167 ~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999987 77899999999999999999999999999999 55 48999999999999999999999999
Q ss_pred CCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHc-Ccc
Q 008358 299 LPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC-GAV 340 (568)
Q Consensus 299 ~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~-ga~ 340 (568)
.|++++.+|.+|+||||+|+.. .+++++|+++ |+.
T Consensus 244 -~gad~~~~d~~g~t~l~~A~~~------~~~~~~Ll~~~~a~ 279 (285)
T 3d9h_A 244 -FGADTQAKNAEGKRPVELVPPE------SPLAQLFLEREGAS 279 (285)
T ss_dssp -TTCCTTCCCTTSCCGGGGSCTT------SHHHHHHHHHC---
T ss_pred -CCCCCCCcCCCCCCHHHHhcCc------cHHHHHHHHhhccC
Confidence 8999999999999999999842 2677777777 543
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7e-39 Score=313.31 Aligned_cols=242 Identities=22% Similarity=0.253 Sum_probs=181.5
Q ss_pred hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccc-cccCCCCCcHH
Q 008358 67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGL-TRKNRSGFDPL 145 (568)
Q Consensus 67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~-~~~~~~g~TpL 145 (568)
.+.+|.+|.||||+|+..|+.-.+ ...+...++.++++.|+..+ .++ +..|..|+|||
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~-------------------~~~~~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L 61 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLET-------------------GNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETAL 61 (253)
T ss_dssp ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred CCCCCCCCCcHHHHHHhccccccc-------------------cchhhcCCChHHHHHHHHcc--CCcccccCCCCCcHH
Confidence 456788999999999998842100 00123344555566666443 233 34588999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHH
Q 008358 146 HIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 225 (568)
Q Consensus 146 h~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv 225 (568)
|+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+|+..|+.+++
T Consensus 62 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 140 (253)
T 1yyh_A 62 HLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140 (253)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence 9999999999999999999998 678899999999999999999999999997778899999999999999999999999
Q ss_pred HHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 008358 226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN 305 (568)
Q Consensus 226 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~ 305 (568)
++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++
T Consensus 141 ~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~ 217 (253)
T 1yyh_A 141 EDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRD 217 (253)
T ss_dssp HHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTT
T ss_pred HHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCcc
Confidence 9999999987 78899999999999999999999999999999 88999999999999999999999999999 899999
Q ss_pred cccCCCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 008358 306 ALTRDHKTALDIAEGLPSSEEASEIKDCLARC 337 (568)
Q Consensus 306 ~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ 337 (568)
.+|..|+||+|+|+..++. +|+++|...
T Consensus 218 ~~d~~g~tpl~~A~~~g~~----~i~~~l~~~ 245 (253)
T 1yyh_A 218 ITDHMDRLPRDIAQERMHH----DIVRLLDLE 245 (253)
T ss_dssp CCCTTCCCHHHHHHHTTCH----HHHHHHHC-
T ss_pred ccccCCCCHHHHHHHcCCH----HHHHHHHHH
Confidence 9999999999999998765 566666543
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-38 Score=323.05 Aligned_cols=281 Identities=25% Similarity=0.269 Sum_probs=212.5
Q ss_pred hhhcCCCCChHhHHHHHcCCHHHHHHHHh--cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcH
Q 008358 67 KQVTGRHNDTELHLAAQRGDLGAVKQILY--GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDP 144 (568)
Q Consensus 67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~--~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~Tp 144 (568)
....+..|.|+||.||+.|+.+.++.|+. +.+.+..+..+.+++++|+..++.++++.|++. +.+++.+|..|+||
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~ 94 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCH
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcH
Confidence 33445567799999999999999999996 345555667788999999999999999999975 56788899999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH--------
Q 008358 145 LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA-------- 216 (568)
Q Consensus 145 Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A-------- 216 (568)
||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+..|.||+|.|
T Consensus 95 L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~ 172 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRER 172 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHH
Confidence 99999999999999999999998 67889999999999999999999999998 556677777777666543
Q ss_pred -------------HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC---CCHHHHHHHHHcCCccccCCCCCCChH
Q 008358 217 -------------ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTA 280 (568)
Q Consensus 217 -------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~d~~G~Tp 280 (568)
+..++.+.++.++...... ...+..|+||||+|+.. ++.+++++|++.|++ ++.+|..|+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~ 250 (351)
T 3utm_A 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTP 250 (351)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred HHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCH
Confidence 3445555555555554332 33456667777777766 446677777777766 66667777777
Q ss_pred HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHh
Q 008358 281 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQ 358 (568)
Q Consensus 281 Lh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~ 358 (568)
||+|+..|+.+++++|++ .|+++|.+|..|+||||+|+..++ .+++++|+++|+..+..+..+.++++.+.+.
T Consensus 251 L~~A~~~g~~~~v~~Ll~-~ga~~n~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~gad~~~~~~~g~tal~~a~~~ 323 (351)
T 3utm_A 251 LHVAAERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGH----LQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323 (351)
T ss_dssp HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHSCHH
T ss_pred HHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHcCCCCCCcCCCCCChhhhhhHH
Confidence 777777777777777776 677777777777777777766544 3566667777776666666666666554443
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.4e-38 Score=305.24 Aligned_cols=233 Identities=24% Similarity=0.286 Sum_probs=203.4
Q ss_pred hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358 68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI 147 (568)
Q Consensus 68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~ 147 (568)
+.+|.+|.||||.||..|+.+++++|++. +. ..+.+++.+|..|+||||+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------~~--~~~~~~~~~~~~g~t~L~~ 52 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNL----------------------------FQ--QGGRELDIYNNLRQTPLHL 52 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHH----------------------------HH--HTTCCSCCCCTTSCCHHHH
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHH----------------------------HH--hcCCCCCcccccCCCHHHH
Confidence 45789999999999999999999999851 11 2355678889999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CccccCcCCChHHHHHHHcCCHHH
Q 008358 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDV 224 (568)
Q Consensus 148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~i 224 (568)
|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+.. +++..|..|.||||+|+..|+.++
T Consensus 53 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 131 (241)
T 1k1a_A 53 AVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHH
Confidence 99999999999999999998 67789999999999999999999999998652 677888999999999999999999
Q ss_pred HHHHHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 008358 225 VKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 303 (568)
Q Consensus 225 v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~ 303 (568)
+++|++.++++ +..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++
T Consensus 132 ~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~ 208 (241)
T 1k1a_A 132 VQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGAD 208 (241)
T ss_dssp HHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCC
T ss_pred HHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC
Confidence 99999999998 4455 8899999999999999999999999999 88999999999999999999999999999 8999
Q ss_pred cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 008358 304 VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 338 (568)
Q Consensus 304 ~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~g 338 (568)
++.+|..|+||||+|+..+ ..++++.|...+
T Consensus 209 ~~~~~~~g~tpl~~A~~~~----~~~i~~~l~~~~ 239 (241)
T 1k1a_A 209 SSLKNCHNDTPLMVARSRR----VIDILRGKATRP 239 (241)
T ss_dssp TTCCCTTSCCTTTTCSSHH----HHHHHTC-----
T ss_pred CCCcCCCCCCHHHHHHhcC----cHHHHhhhccCC
Confidence 9999999999999998743 445666555543
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=313.36 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=124.3
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhc-CCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYG-IDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
+|.||||.||..|+.+++++|++. .+.+..+..+.++++.|+..++.++++.|++. +.+++.+|..|+||||+|+..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVS 79 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHc
Confidence 588999999999999999999963 33333334444455555555555555555543 234444455555555555555
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 231 (568)
|+.+++++|+++|+++. .+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.
T Consensus 80 ~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 55555555555554442 223345555555555555555555544 334444455555555555555555555555555
Q ss_pred CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC-------CCc
Q 008358 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD-------TNV 304 (568)
Q Consensus 232 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g-------~~~ 304 (568)
|+++. .|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..+ +++++|++..+ +++
T Consensus 157 g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~ 231 (261)
T 2xai_A 157 GADVN--QGKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRL 231 (261)
T ss_dssp TCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHH
T ss_pred CCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHH
Confidence 54442 144455555555555555555555555555 4445555555555554332 24444444211 123
Q ss_pred ccccCCCCCHHHHHhhCC
Q 008358 305 NALTRDHKTALDIAEGLP 322 (568)
Q Consensus 305 ~~~d~~G~T~L~~A~~~~ 322 (568)
+.+|..|+|++|.+.+..
T Consensus 232 ~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 232 RIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp HHHTTSCTTCGGGGGGSS
T ss_pred HHHHHhchhccccCcccC
Confidence 344555555555554443
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.9e-38 Score=313.06 Aligned_cols=250 Identities=21% Similarity=0.200 Sum_probs=164.4
Q ss_pred hhcCCCCChHhHHHHHcCCHHHHHHHHhc-CC---ccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358 68 QVTGRHNDTELHLAAQRGDLGAVKQILYG-ID---SQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD 143 (568)
Q Consensus 68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~---~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T 143 (568)
+..|..|.||||+||+.|+.++|++|++. .+ .+..+..+.+|+++|+..++.++++.|++. +++++.+|..|+|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t 80 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHT 80 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence 45788999999999999999999999963 33 233344455666666666666666666643 3445555666666
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcc------------cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCCh
Q 008358 144 PLHIAAVQGHHAIVQVLLDHDPSLSQ------------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 211 (568)
Q Consensus 144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 211 (568)
|||+|+..|+.+++++|++++++... .....+.++++.++..+....+..++...+.+++..+..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 66666666666666666665544211 111223445555554444433333333334456778889999
Q ss_pred HHHHHHHcCCHHHHHHHHcCCCccccccC-CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcH
Q 008358 212 ALHFAARQGHVDVVKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 290 (568)
Q Consensus 212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~ 290 (568)
|||+|+..|+.+++++|+++|+++ +..+ ..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCc
Confidence 999999999999999999999988 4445 4599999999999999999999999999 889999999999999999999
Q ss_pred HHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 008358 291 EIVTELLSLPDTNVNALTRDHKTALDIAEGLP 322 (568)
Q Consensus 291 ~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~ 322 (568)
+++++|++ .|++++.+|.+|.||+++|....
T Consensus 239 ~~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 239 ILARLLRA-HGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHH-TTCCCCCCC--------------
T ss_pred HHHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence 99999999 89999999999999999987643
No 13
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.3e-37 Score=297.61 Aligned_cols=227 Identities=27% Similarity=0.339 Sum_probs=206.7
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 150 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~ 150 (568)
+..+++|||.|++.|+.+.++.|++.. +..++..|..|+||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~---------------------------------~~~~~~~~~~g~t~L~~A~~ 49 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD---------------------------------KSLATRTDQDSRTALHWACS 49 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC---------------------------------GGGGGCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc---------------------------------hhhhhcCCCCCCCHHHHHHH
Confidence 446789999999999999999999521 22356678899999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358 151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230 (568)
Q Consensus 151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 230 (568)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++
T Consensus 50 ~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 127 (231)
T 3aji_A 50 AGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127 (231)
T ss_dssp HTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999998 67889999999999999999999999998 66788889999999999999999999999999
Q ss_pred CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCC
Q 008358 231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310 (568)
Q Consensus 231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~ 310 (568)
.+.++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 128 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~ 204 (231)
T 3aji_A 128 GGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKE 204 (231)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTT
T ss_pred cCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCC
Confidence 99987 77899999999999999999999999999999 88899999999999999999999999999 79999999999
Q ss_pred CCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 008358 311 HKTALDIAEGLPSSEEASEIKDCLARCGA 339 (568)
Q Consensus 311 G~T~L~~A~~~~~~~~~~~i~~~L~~~ga 339 (568)
|+||+|+|... ...+++++|.++|+
T Consensus 205 g~t~l~~A~~~----~~~~i~~lL~~~~a 229 (231)
T 3aji_A 205 EKTPLQVAKGG----LGLILKRLAEGEEA 229 (231)
T ss_dssp SCCHHHHSCHH----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhh----HHHHHHHHHccccc
Confidence 99999999763 34578888888775
No 14
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.5e-37 Score=295.63 Aligned_cols=212 Identities=25% Similarity=0.273 Sum_probs=191.8
Q ss_pred CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358 74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 153 (568)
Q Consensus 74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~ 153 (568)
|+||||.||+.|+.++++.|++... ...+..|..|+||||+|+..|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~ 48 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKP---------------------------------SLLLQKDQDGRIPLHWSVSFQA 48 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCG---------------------------------GGTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCc---------------------------------cccccCCCCCCCHHHHHHHcCC
Confidence 6799999999999999999996321 1234468899999999999999
Q ss_pred HHHHHHHHhcC--CCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358 154 HAIVQVLLDHD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD-GGLLEISRSNGKNALHFAARQGHVDVVKALLS 230 (568)
Q Consensus 154 ~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 230 (568)
.+++++|+++| +++....+..|.||||+|+..|+.+++++|++++ ..+++..+..|.||||+|+..|+.+++++|++
T Consensus 49 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 128 (228)
T 2dzn_A 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128 (228)
T ss_dssp HHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH
Confidence 99999999999 5554447889999999999999999999999985 26778889999999999999999999999999
Q ss_pred CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC-CccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 008358 231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD-AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309 (568)
Q Consensus 231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g-~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~ 309 (568)
++.++ +..|..|+||||+|+..|+.+++++|++.| ++ ++.+|..|+||||+|+..|+.+++++|++..|++++.+|.
T Consensus 129 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~ 206 (228)
T 2dzn_A 129 NGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206 (228)
T ss_dssp TTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred cCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence 99987 788999999999999999999999999999 66 8999999999999999999999999999438999999999
Q ss_pred CCCCHHHHHhh
Q 008358 310 DHKTALDIAEG 320 (568)
Q Consensus 310 ~G~T~L~~A~~ 320 (568)
+|+||+|+|..
T Consensus 207 ~g~t~l~~A~~ 217 (228)
T 2dzn_A 207 KGAKAEDVALN 217 (228)
T ss_dssp TSCBGGGGCSS
T ss_pred CCCcHHHHHHH
Confidence 99999999975
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.4e-38 Score=324.40 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=187.4
Q ss_pred hHhhhcCCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358 65 YVKQVTGRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD 143 (568)
Q Consensus 65 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T 143 (568)
...+..|..|.||||.||..|+.++|++||+ +.+.+..+..+.+++++|+..++.++++.|++.+. +..+.+|.|
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t 86 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQK 86 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBC
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCC
Confidence 3445567788999999999999999999997 45555566667778888888888888888887654 222346788
Q ss_pred HHHHHHHcCCHHHHHHHHhc----CCCCccc-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCC
Q 008358 144 PLHIAAVQGHHAIVQVLLDH----DPSLSQT-----------------TGPSNATPLVSAATRG--HTAVVNELLSKDGG 200 (568)
Q Consensus 144 pLh~Aa~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~Aa~~g--~~~~v~~Ll~~~~~ 200 (568)
|||+|+..|+.+++++|+++ |.++ .. .|..|.||||+|+..| +.+++++|++. +.
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga 164 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GA 164 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CC
Confidence 88888888888888888887 5554 22 5667788888888888 78888888877 56
Q ss_pred CccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc----ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCC
Q 008358 201 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL----ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 276 (568)
Q Consensus 201 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~ 276 (568)
+++..|..|.||||+|+..|+.+++++|++.+++. .+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~ 243 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNE 243 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTT
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence 67777788888888888888888888888877761 266777888888888888888888888888887 6778888
Q ss_pred CChHHHHHHHcCcHHHHHHHhcCCCCCccc------------ccCCCCCHHHHHhhCC
Q 008358 277 GNTALHVATRKKRTEIVTELLSLPDTNVNA------------LTRDHKTALDIAEGLP 322 (568)
Q Consensus 277 G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~------------~d~~G~T~L~~A~~~~ 322 (568)
|+||||+|+..|+.+++++|++ .|++++. .+..|+||++.|+..+
T Consensus 244 g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 244 HTVPLYLSVRAAMVLLTKELLQ-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp SCCHHHHHHHTCCHHHHHHHHH-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred CCCHHHHHHHhChHHHHHHHHH-cCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence 8888888888888888888887 5555432 4556777777766543
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=310.26 Aligned_cols=221 Identities=27% Similarity=0.344 Sum_probs=171.0
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 150 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~ 150 (568)
|..+.+||+.||+.|+.++|++||+....... .....++..+..|.||||.|+.
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~--------------------------~~~~~~~~~~~~~~t~L~~a~~ 61 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLE--------------------------DAEDTVSAADPEFCHPLCQCPK 61 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------------------
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccc--------------------------cccccccccCccCCCHHHHHHH
Confidence 44566999999999999999999974332211 1122356678889999999998
Q ss_pred cCCH-HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHH
Q 008358 151 QGHH-AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 229 (568)
Q Consensus 151 ~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll 229 (568)
.++. .+++.|++.|+++ +..|.+|+||||+|+..|+.+++++|++. +.+++..+.+|.||+|.|+..++.++++.|+
T Consensus 62 ~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll 139 (269)
T 4b93_B 62 CAPAQKRLAKVPASGLGV-NVTSQDGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLL 139 (269)
T ss_dssp -------------CCCCT-TCCCTTSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHH
Confidence 8876 4899999999998 67899999999999999999999999998 5678889999999999999999999999999
Q ss_pred cCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 008358 230 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 309 (568)
Q Consensus 230 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~ 309 (568)
+.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|.
T Consensus 140 ~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~ 216 (269)
T 4b93_B 140 DSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNK 216 (269)
T ss_dssp HTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCT
T ss_pred HCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCC
Confidence 999998 78899999999999999999999999999999 89999999999999999999999999999 8999999999
Q ss_pred CCCCHHHHHhhCC
Q 008358 310 DHKTALDIAEGLP 322 (568)
Q Consensus 310 ~G~T~L~~A~~~~ 322 (568)
+|+||||+|++.+
T Consensus 217 ~G~TpL~~A~~~~ 229 (269)
T 4b93_B 217 RQRTAVDCAEQNS 229 (269)
T ss_dssp TSCCSGGGSCTTC
T ss_pred CCCCHHHHHHhCC
Confidence 9999999997643
No 17
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-36 Score=296.19 Aligned_cols=234 Identities=23% Similarity=0.254 Sum_probs=216.0
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA 149 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa 149 (568)
+..|.||||.|+..|+.+++++|++ +.+.+..+..+.++++.|+..++.++++.|++. +.+++.+|..|+||||+|+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 113 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFMEAA 113 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHHHH
Confidence 6779999999999999999999997 455666667788999999999999999999975 5668889999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccC---------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358 150 VQGHHAIVQVLLDHDPSLSQTT---------GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220 (568)
Q Consensus 150 ~~g~~~iv~~Ll~~~~~~~~~~---------~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 220 (568)
..|+.+++++|+++|+++.... +..|.||||+|+..|+.+++++|++..+.+++..|..|.||||.|+..+
T Consensus 114 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 193 (285)
T 1wdy_A 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193 (285)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCS
T ss_pred HhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcc
Confidence 9999999999999999884332 7789999999999999999999999878888999999999999999999
Q ss_pred C----HHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH-cCCccccCCCCCCChHHHHHHHcCcHHHHHH
Q 008358 221 H----VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTE 295 (568)
Q Consensus 221 ~----~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~-~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~ 295 (568)
+ .+++++|++.+.++ +..|..|+||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..|+.+++++
T Consensus 194 ~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~ 271 (285)
T 1wdy_A 194 DDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAEL 271 (285)
T ss_dssp CTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHH
Confidence 9 99999999999998 7889999999999999999999999999 7888 88999999999999999999999999
Q ss_pred HhcCCCCCcccccC
Q 008358 296 LLSLPDTNVNALTR 309 (568)
Q Consensus 296 Ll~~~g~~~~~~d~ 309 (568)
|++ .|++++.+|.
T Consensus 272 Ll~-~Ga~~~~~d~ 284 (285)
T 1wdy_A 272 LCK-RGASTDCGDL 284 (285)
T ss_dssp HHH-HSSCSCCSSC
T ss_pred HHH-cCCCCCcccc
Confidence 999 8999998874
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-36 Score=297.79 Aligned_cols=232 Identities=22% Similarity=0.238 Sum_probs=180.6
Q ss_pred cccccCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 008358 133 GLTRKNRSGFDPLHIAAVQG-------------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 199 (568)
Q Consensus 133 ~~~~~~~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~ 199 (568)
++|.+|.+|+||||+|+..| +.+++++|+++|+++....|..|.||||+|+..|+.+++++|+++ +
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g 80 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-S 80 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-C
Confidence 46888999999999999987 899999999999999777899999999999999999999999998 6
Q ss_pred CCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCCh
Q 008358 200 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 279 (568)
Q Consensus 200 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~T 279 (568)
.+++..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|+|
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t 159 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKS 159 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCB
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 678889999999999999999999999999999855588899999999999999999999999999999 8899999999
Q ss_pred HHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358 280 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI 359 (568)
Q Consensus 280 pLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~ 359 (568)
|||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|+++|+..+..+..+++++..+....
T Consensus 160 ~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g 234 (253)
T 1yyh_A 160 ALHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGS----YETAKVLLDHFANRDITDHMDRLPRDIAQERM 234 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHHcCCCccccccCCCCHHHHHHHcC
Confidence 9999999999999999999 899999999999999999998765 47899999999999888889999999999998
Q ss_pred hhhhhhhHhHhh
Q 008358 360 KKDVHTQLEQTR 371 (568)
Q Consensus 360 ~~~~~~~l~~~~ 371 (568)
+.++...+.+..
T Consensus 235 ~~~i~~~l~~~~ 246 (253)
T 1yyh_A 235 HHDIVRLLDLEH 246 (253)
T ss_dssp CHHHHHHHHC--
T ss_pred CHHHHHHHHHHh
Confidence 888887776543
No 19
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=293.49 Aligned_cols=220 Identities=22% Similarity=0.277 Sum_probs=199.9
Q ss_pred CCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 008358 106 SGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 185 (568)
Q Consensus 106 ~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~ 185 (568)
+.++++.|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVS 79 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 57899999999999999999975 5678899999999999999999999999999999998 67899999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHc
Q 008358 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265 (568)
Q Consensus 186 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 265 (568)
|+.+++++|++++. +++ .+.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~-~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 80 GSWDCVNLLLQHGA-SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp TCHHHHHHHHHTTC-CSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCC-CCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999999854 444 3566999999999999999999999999987 77899999999999999999999999999
Q ss_pred CCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358 266 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV 340 (568)
Q Consensus 266 g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~ 340 (568)
|++ ++. |..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||+|+|+..+ .+.+.|++++..
T Consensus 157 g~~-~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpl~~A~~~~------~~~~~ll~~~~~ 222 (261)
T 2xai_A 157 GAD-VNQ-GKGQDSPLHAVARTASEELACLLMD-FGADTQAKNAEGKRPVELVPPES------PLAQLFLEREGP 222 (261)
T ss_dssp TCC-TTC-CBTTBCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTTC------THHHHHHHC-CC
T ss_pred CCC-CCC-CCCCCChHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCChhhhccccc------cHHHHHHhccCC
Confidence 999 554 8999999999999999999999999 79999999999999999998543 477778877653
No 20
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=285.99 Aligned_cols=230 Identities=25% Similarity=0.339 Sum_probs=206.1
Q ss_pred cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358 70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA 149 (568)
Q Consensus 70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa 149 (568)
.|..|.|+||.|+..|+.+++++|++. +.+++.++..|.||||+|+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A~ 50 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEA----------------------------------GYDVRQPDKENVTLLHWAA 50 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHc----------------------------------CCCcCCCCCCCCCHHHHHH
Confidence 467788999999999999999999952 3456777889999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHH
Q 008358 150 VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 229 (568)
Q Consensus 150 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll 229 (568)
..|+.+++++|+++|+++....+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|+
T Consensus 51 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 129 (240)
T 3eu9_A 51 INNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHH
Confidence 999999999999999998777777899999999999999999999988 6677888999999999999999999999999
Q ss_pred cCCCccccccCCCCCCHHHHHHhCCC-HHHHHHHHHcCCccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 008358 230 SKDPQLARRTDKKGQTALHMAVKGQS-CEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNAL 307 (568)
Q Consensus 230 ~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~ 307 (568)
+.++++ +..|..|.||||+|+..++ .+++++|++.|++ ++..+. .|+||||+|+..|+.+++++|++ .|++++.+
T Consensus 130 ~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~ 206 (240)
T 3eu9_A 130 AKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQ 206 (240)
T ss_dssp HTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCB
T ss_pred hcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc
Confidence 999987 7789999999999996555 8999999999999 666776 89999999999999999999999 79999999
Q ss_pred cCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358 308 TRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 341 (568)
Q Consensus 308 d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 341 (568)
|..|+||||+|+..++. +++++|.++++..
T Consensus 207 ~~~g~t~l~~A~~~~~~----~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 207 NIKGESALDLAKQRKNV----WMINHLQEARQAK 236 (240)
T ss_dssp CTTSCBHHHHHHHTTCH----HHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHcCcH----HHHHHHHHhhhcc
Confidence 99999999999998764 7888888887654
No 21
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-36 Score=313.54 Aligned_cols=278 Identities=20% Similarity=0.187 Sum_probs=223.0
Q ss_pred hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccC-CCCCcHHHHHHHcCCH
Q 008358 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHH 154 (568)
Q Consensus 76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~-~~g~TpLh~Aa~~g~~ 154 (568)
++++-+...|+.+.++.++.. ..+..+.++++.|+..+ .++++.|+ ..+++..| ..|+||||+|+..|+.
T Consensus 68 ~~~~~~~~~g~~~~~~~~~~~----~~~~~g~t~L~~Aa~~~-~~~~~~L~----~~~~n~~d~~~g~t~Lh~Aa~~g~~ 138 (373)
T 2fo1_E 68 GYGNGNDFLGDFNHTNLQIPT----EPEPESPIKLHTEAAGS-YAITEPIT----RESVNIIDPRHNRTVLHWIASNSSA 138 (373)
T ss_dssp ------------------------------CCCHHHHHHHSS-SCCCSCCS----TTTTTTCCCSSCCCHHHHHHCTTCC
T ss_pred ccCCCCCcccccccccccccc----CCCCCCccHHHHHhcCC-chHHHHhc----cccccccCCcCCCCHHHHHHHCCCH
Confidence 567788889999999988743 22455788999999854 45666554 35678888 7999999999999999
Q ss_pred HHHHHHH--------hcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHH
Q 008358 155 AIVQVLL--------DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 226 (568)
Q Consensus 155 ~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~ 226 (568)
+++++|+ +.|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.++++
T Consensus 139 ~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~ 216 (373)
T 2fo1_E 139 EKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMV 216 (373)
T ss_dssp SCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHH
Confidence 8888776 789998 67899999999999999999999999998 6678899999999999999999999999
Q ss_pred HHHcCC---CccccccCCCCCCHHHHHHhCC---CHHHHHHHHHcCCccccC--------CCCCCChHHHHHHHcCcHHH
Q 008358 227 ALLSKD---PQLARRTDKKGQTALHMAVKGQ---SCEVVKLLLEADAAIVML--------PDKFGNTALHVATRKKRTEI 292 (568)
Q Consensus 227 ~Ll~~~---~~~~~~~d~~g~t~Lh~A~~~~---~~~~v~~Ll~~g~~~~~~--------~d~~G~TpLh~A~~~g~~~i 292 (568)
+|++.+ .++ +..|..|+||||+|+..+ +.+++++|+++|++ ++. .|..|+||||+|+..|+.++
T Consensus 217 ~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~ 294 (373)
T 2fo1_E 217 YMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294 (373)
T ss_dssp HHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH
T ss_pred HHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHH
Confidence 999987 454 778999999999999988 89999999999998 443 67899999999999999999
Q ss_pred HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358 293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 370 (568)
Q Consensus 293 v~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 370 (568)
+++|++..+++++.+|.+|+||||+|+..++ .+++++|+++|+..+..+..+.+++..++...+.++.+.|.+.
T Consensus 295 v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 295 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR----IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhcCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 9999985669999999999999999998765 4789999999999988888899999999998888887776543
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-35 Score=293.53 Aligned_cols=247 Identities=19% Similarity=0.205 Sum_probs=141.2
Q ss_pred CCCCchHHHHHhhhhHHHHHHhhhcCccc-ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 008358 105 LSGAEFDTEVAEIRSSVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 183 (568)
Q Consensus 105 ~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa 183 (568)
.+.+++|.|+..++.++++.|++.+.... ++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLAC 86 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 34444444544444444444444333211 4444444455555555555555555555544444 334444445555555
Q ss_pred HcCCHHHHHHHHHcCCCCc------------cccCcCCChHHHHHHHcCCHHHHHHHHc-CCCccccccCCCCCCHHHHH
Q 008358 184 TRGHTAVVNELLSKDGGLL------------EISRSNGKNALHFAARQGHVDVVKALLS-KDPQLARRTDKKGQTALHMA 250 (568)
Q Consensus 184 ~~g~~~~v~~Ll~~~~~~~------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A 250 (568)
..|+.+++++|++++.... ......+.++++.++..+.......++. .+.+ .+..|..|+||||+|
T Consensus 87 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A 165 (282)
T 1oy3_D 87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVA 165 (282)
T ss_dssp TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGG-TTCCCTTSCCHHHHH
T ss_pred HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHH
Confidence 4455555544444322110 0111223344444433332222222211 1222 366788999999999
Q ss_pred HhCCCHHHHHHHHHcCCccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHH
Q 008358 251 VKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE 329 (568)
Q Consensus 251 ~~~~~~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~ 329 (568)
+..|+.+++++|+++|++ ++.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+
T Consensus 166 ~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~----~~ 239 (282)
T 1oy3_D 166 VIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPN----PI 239 (282)
T ss_dssp HHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSC----HH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCC----cH
Confidence 999999999999999999 666665 59999999999999999999999 799999999999999999998765 47
Q ss_pred HHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358 330 IKDCLARCGAVRANELNQPRDELRKTVTQI 359 (568)
Q Consensus 330 i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~ 359 (568)
++++|+++|+..+.....+.+++..+.+..
T Consensus 240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHHHHHTTCCCCCCC--------------
T ss_pred HHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence 999999999999988888888887665543
No 23
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=4.3e-35 Score=299.39 Aligned_cols=258 Identities=23% Similarity=0.244 Sum_probs=228.3
Q ss_pred cCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH
Q 008358 104 NLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA 183 (568)
Q Consensus 104 ~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa 183 (568)
..+.++++.|+..|+.+.++.++.. .+.+++.+|..|+||||+|+..|+.++|++|+++|+++ +..|..|.||||+|+
T Consensus 22 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred cccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHH
Confidence 3456789999999999999999864 46778899999999999999999999999999999998 678899999999999
Q ss_pred HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHH------------
Q 008358 184 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV------------ 251 (568)
Q Consensus 184 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~------------ 251 (568)
..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++++++ +..+..|.||+|+|+
T Consensus 100 ~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 100 SYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 99999999999998 6678889999999999999999999999999999987 778999999988764
Q ss_pred ---------hCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc---CcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358 252 ---------KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319 (568)
Q Consensus 252 ---------~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~---g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~ 319 (568)
..++.+.++.++..+.. ....+..|+||||+|+.. ++.+++++|++ .|++++.+|.+|+||||+|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~ 255 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMTPLHVAA 255 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTTCCCHHHHHH
T ss_pred cccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCCCCCHHHHHH
Confidence 45666666666666554 455788899999999999 66899999999 89999999999999999999
Q ss_pred hCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHhh
Q 008358 320 GLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR 371 (568)
Q Consensus 320 ~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 371 (568)
..++. +++++|+++|+..+..+..+.++++.++.....++.+.|-+..
T Consensus 256 ~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 303 (351)
T 3utm_A 256 ERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG 303 (351)
T ss_dssp HTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 98764 7899999999999888889999999999988888888776543
No 24
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3e-35 Score=281.24 Aligned_cols=213 Identities=22% Similarity=0.287 Sum_probs=193.5
Q ss_pred HHHHHHhhhcCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 008358 120 SVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 198 (568)
Q Consensus 120 ~~v~~Ll~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~ 198 (568)
++++.|++. +.+++. .|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+
T Consensus 5 ~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 5 AVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred HHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 334444433 334444 4889999999999999999999999999998 678899999999999999999999999997
Q ss_pred CCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCC
Q 008358 199 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 278 (568)
Q Consensus 199 ~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~ 278 (568)
+.+++..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 159 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREE 159 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCc
Confidence 7788899999999999999999999999999999987 77899999999999999999999999999999 889999999
Q ss_pred hHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358 279 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA 342 (568)
Q Consensus 279 TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~ 342 (568)
||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..++. +++++|.++|+...
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLVRS 218 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCSSC
T ss_pred CHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCCcc
Confidence 99999999999999999999 8999999999999999999987654 78999999998754
No 25
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=291.23 Aligned_cols=243 Identities=19% Similarity=0.223 Sum_probs=198.3
Q ss_pred ccCCCCchHHHHHhhhhHHHHHHhhhc---------CcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCC
Q 008358 103 GNLSGAEFDTEVAEIRSSVVNELLKYS---------TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP 173 (568)
Q Consensus 103 ~~~~~~~l~~a~~~~~~~~v~~Ll~~~---------~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~ 173 (568)
...+.+++|+|+..|+.+.+..++... ....++.+|..|+||||+|+..|+.+++++|++.|+++ +..|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence 345678999999999977666654432 12346778999999999999999999999999999998 67899
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253 (568)
Q Consensus 174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 253 (568)
.|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++.++++ + .+.+|.||||+|+..
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARR 167 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHc
Confidence 999999999999999999999998 6778899999999999999999999999999999887 3 345699999999999
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 008358 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 333 (568)
Q Consensus 254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~ 333 (568)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++. |..|+||||+|+..++. +++++
T Consensus 168 g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~~ 240 (285)
T 3d9h_A 168 GHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASE----ELACL 240 (285)
T ss_dssp TCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCH----HHHHH
T ss_pred CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCH----HHHHH
Confidence 999999999999999 88999999999999999999999999999 7999995 89999999999997764 78899
Q ss_pred HHHcCcccccccCCChhHHHHHH
Q 008358 334 LARCGAVRANELNQPRDELRKTV 356 (568)
Q Consensus 334 L~~~ga~~~~~~~~~~~~l~~~~ 356 (568)
|+++|++.+..+..++++++.+.
T Consensus 241 Ll~~gad~~~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 241 LMDFGADTQAKNAEGKRPVELVP 263 (285)
T ss_dssp HHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HHHCCCCCCCcCCCCCCHHHHhc
Confidence 99999999888888888887766
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.2e-36 Score=298.08 Aligned_cols=236 Identities=23% Similarity=0.280 Sum_probs=155.7
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358 72 RHNDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 150 (568)
Q Consensus 72 ~~g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~ 150 (568)
..|.||||.||..|+.++|+.|++ +.+.+..+..+.++++.|+..++.++++.|++. +.+++.+|..|+||||+|+.
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAAS 115 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHH
Confidence 356699999999999999999996 333333333444445555555555555544432 23344444445555555555
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358 151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230 (568)
Q Consensus 151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 230 (568)
.|+.+++++|+++|+++ +..|..|.||||+|+..|+.++++.++...+.+.+..+..+.++++. .+..++.
T Consensus 116 ~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~~l~ 186 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQWLN 186 (299)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred cCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH--------HHHHHHh
Confidence 55555555555554444 33444445555555555555555444444333333322222222221 1223333
Q ss_pred CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCC
Q 008358 231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 310 (568)
Q Consensus 231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~ 310 (568)
.+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 187 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~ 264 (299)
T 1s70_B 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKV 264 (299)
T ss_dssp HTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTT
T ss_pred ccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCC
Confidence 33333345678899999999999999999999999999 88999999999999999999999999999 89999999999
Q ss_pred CCCHHHHHhh
Q 008358 311 HKTALDIAEG 320 (568)
Q Consensus 311 G~T~L~~A~~ 320 (568)
|+||||+|.+
T Consensus 265 g~t~l~~A~~ 274 (299)
T 1s70_B 265 GQTAFDVADE 274 (299)
T ss_dssp SCCTTTSCCS
T ss_pred CCCHHHHHHH
Confidence 9999999964
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.3e-34 Score=277.84 Aligned_cols=219 Identities=25% Similarity=0.326 Sum_probs=202.7
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358 133 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 212 (568)
Q Consensus 133 ~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 212 (568)
+++.+|..|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++ +.+++..+..|.||
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~ 80 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTC 80 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcH
Confidence 56788999999999999999999999999999998 67888999999999999999999999988 66788889999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHH
Q 008358 213 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 292 (568)
Q Consensus 213 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~i 292 (568)
||+|+..|+.+++++|++.++...+..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999555588899999999999999999999999999999 88899999999999999999999
Q ss_pred HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhh
Q 008358 293 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI 359 (568)
Q Consensus 293 v~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~ 359 (568)
+++|++ .|++++.+|..|+||||+|+..++. +++++|+++|+..+..+..+.++++.+....
T Consensus 160 ~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 160 AEILLA-AKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDSDVTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp HHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTSCCHHHHSCTTC
T ss_pred HHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCCCCCccCCCCCCHHHHHHHHH
Confidence 999999 8999999999999999999997654 7889999999998888888888887765543
No 28
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.5e-35 Score=303.78 Aligned_cols=231 Identities=19% Similarity=0.216 Sum_probs=207.2
Q ss_pred cccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHH
Q 008358 100 QMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL 179 (568)
Q Consensus 100 ~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 179 (568)
+..+..+.++++.|+..|+.++++.|++. +.+++.+|..|+||||+|+..|+.++|++|+++|++. .+..|.|||
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L 88 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPI 88 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHH
Confidence 33445567899999999999999999976 5678999999999999999999999999999999965 235799999
Q ss_pred HHHHHcCCHHHHHHHHHcC---CCCccc-----------------cCcCCChHHHHHHHcC--CHHHHHHHHcCCCcccc
Q 008358 180 VSAATRGHTAVVNELLSKD---GGLLEI-----------------SRSNGKNALHFAARQG--HVDVVKALLSKDPQLAR 237 (568)
Q Consensus 180 ~~Aa~~g~~~~v~~Ll~~~---~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~ 237 (568)
|+|+..|+.+++++|++.+ +..++. .|..|.||||+|+..| +.+++++|++.++++ +
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-T 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-T
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-c
Confidence 9999999999999999872 233333 7889999999999999 999999999999997 7
Q ss_pred ccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 008358 238 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 313 (568)
Q Consensus 238 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T 313 (568)
..|..|+||||+|+..|+.+++++|+++|++. ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~~g~t 246 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNMEDNEHTV 246 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCC
Confidence 88999999999999999999999999998874 67889999999999999999999999999 89999999999999
Q ss_pred HHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358 314 ALDIAEGLPSSEEASEIKDCLARCGAVR 341 (568)
Q Consensus 314 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 341 (568)
|||+|+..++. +++++|+++|+..
T Consensus 247 pL~~A~~~g~~----~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 247 PLYLSVRAAMV----LLTKELLQKTDVF 270 (364)
T ss_dssp HHHHHHHTCCH----HHHHHHHHHSCHH
T ss_pred HHHHHHHhChH----HHHHHHHHcCCch
Confidence 99999998764 7888899988764
No 29
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.4e-36 Score=289.99 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=189.9
Q ss_pred hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHH
Q 008358 68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHI 147 (568)
Q Consensus 68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~ 147 (568)
+.+|.+|.||||.|+..|+.++++.|++... ..+.+++.+|..|+||||+
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------------------~~~~~~~~~~~~g~t~L~~ 51 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVK------------------------------GDLAFLNFQNNLQQTPLHL 51 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----------------------------------CCCCCCCCTTCCCHHHH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhh------------------------------ccHHHhhccCCCCCCHHHH
Confidence 4678899999999999999999999985321 1234678889999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CccccCcCCChHHHHHHHcCCH
Q 008358 148 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHV 222 (568)
Q Consensus 148 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~tpLh~A~~~g~~ 222 (568)
|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+.. ..+..+..|.||||+|+..|+.
T Consensus 52 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 130 (236)
T 1ikn_D 52 AVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130 (236)
T ss_dssp HHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCH
Confidence 99999999999999999998 67889999999999999999999999998642 2567788999999999999999
Q ss_pred HHHHHHHcCCCccccccCC-CCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC
Q 008358 223 DVVKALLSKDPQLARRTDK-KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 301 (568)
Q Consensus 223 ~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g 301 (568)
+++++|+++|+++ +..+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|
T Consensus 131 ~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~g 207 (236)
T 1ikn_D 131 GIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LT 207 (236)
T ss_dssp HHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TS
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHH-cc
Confidence 9999999999998 56666 999999999999999999999999999 88999999999999999999999999999 89
Q ss_pred CCcc--cccCCCCCHHHHHhhC
Q 008358 302 TNVN--ALTRDHKTALDIAEGL 321 (568)
Q Consensus 302 ~~~~--~~d~~G~T~L~~A~~~ 321 (568)
++.. ..+.+|.|+.+.+...
T Consensus 208 a~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 208 LENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp CGGGSSCCCCCTTTCCCCC---
T ss_pred hhhhhcCCccchHHHHhhhccc
Confidence 9766 7889999998876543
No 30
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.4e-34 Score=279.76 Aligned_cols=226 Identities=29% Similarity=0.318 Sum_probs=199.5
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCC
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 209 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 209 (568)
++.+|.+|+||||+|+..|+.+++++|++ .+.++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g 79 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHG 79 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC
Confidence 35678999999999999999999999997 67776 67889999999999999999999999998 56788889999
Q ss_pred ChHHHHHHHcCCHHHHHHHHcCCC----ccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCC-CCCChHHHHH
Q 008358 210 KNALHFAARQGHVDVVKALLSKDP----QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD-KFGNTALHVA 284 (568)
Q Consensus 210 ~tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d-~~G~TpLh~A 284 (568)
.||||+|+..|+.+++++|++.++ ++ +..|..|+||||+|+..|+.+++++|++.|++ ++..| ..|+||||+|
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A 157 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHA 157 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHH
Confidence 999999999999999999999987 44 67789999999999999999999999999999 66667 8899999999
Q ss_pred HHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhh
Q 008358 285 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVH 364 (568)
Q Consensus 285 ~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~ 364 (568)
+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|+++|+..+..+..+.++++.++.....++.
T Consensus 158 ~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 158 VENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp HHTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHH
Confidence 99999999999999 799999999999999999998765 4789999999999888888888888877776666665
Q ss_pred hhHh
Q 008358 365 TQLE 368 (568)
Q Consensus 365 ~~l~ 368 (568)
+.+.
T Consensus 233 ~~l~ 236 (241)
T 1k1a_A 233 RGKA 236 (241)
T ss_dssp TC--
T ss_pred hhhc
Confidence 5544
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.3e-34 Score=290.11 Aligned_cols=254 Identities=26% Similarity=0.255 Sum_probs=222.4
Q ss_pred CCchHHHHHhhhhHHHHHHhhhcCcccccccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHc
Q 008358 107 GAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNR-SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR 185 (568)
Q Consensus 107 ~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~ 185 (568)
.++|+.|+..++.++|+.||+. ++++|.++. .|+||||+|+..|+.++|++|+++|+++ +..+..+.+|++.++..
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHHHHhc
Confidence 4578999999999999999976 567887765 5999999999999999999999999998 67889999999999999
Q ss_pred CCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccc---------cccCCCCCCHHHHHHhCCCH
Q 008358 186 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA---------RRTDKKGQTALHMAVKGQSC 256 (568)
Q Consensus 186 g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~~~~ 256 (568)
++..++..++.. +.+++..|..|.||||+|+..|+.+++++|+++|+++. ...+..|.||||+|+..|+.
T Consensus 103 ~~~~~~~~~~~~-~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 103 GSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp TCHHHHHHHHTT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred ccchhhHHhhhc-cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 999999999987 66788899999999999999999999999999988752 23456799999999999999
Q ss_pred HHHHHHHH-cCCccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHH
Q 008358 257 EVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK 331 (568)
Q Consensus 257 ~~v~~Ll~-~g~~~~~~~d~~G~TpLh~A~~~g~----~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~ 331 (568)
+++++|++ .|++ ++.+|..|+|+||.++..+. ..++++|++ .|+++|.+|.+|+||||+|+..+.. +++
T Consensus 182 ~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~----~~v 255 (337)
T 4g8k_A 182 EVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHL----GLV 255 (337)
T ss_dssp HHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCH----HHH
T ss_pred HHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhh----HHH
Confidence 99999996 5788 89999999999999886543 468889998 8999999999999999999998764 456
Q ss_pred HHHHH-cCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358 332 DCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 370 (568)
Q Consensus 332 ~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 370 (568)
+.|+. .|+..+..+..++++++.++.....++.+.|-+.
T Consensus 256 ~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp HHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 66665 5788888888899999999999888888877654
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-33 Score=271.41 Aligned_cols=210 Identities=27% Similarity=0.293 Sum_probs=190.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCccc-cCcCCChHHHHHHH
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG-GLLEI-SRSNGKNALHFAAR 218 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~-~~~~~-~d~~g~tpLh~A~~ 218 (568)
|+||||+|+..|+.++++.|++.+++.....|..|.||||+|+..|+.+++++|++.+. .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 78999999999999999999999999877789999999999999999999999999952 33444 78899999999999
Q ss_pred cCCHHHHHHHHcCC--CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 219 QGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 219 ~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
.|+.+++++|++.+ +++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 665 77899999999999999999999999999999 889999999999999999999999999
Q ss_pred hcCCC-CCcccccCCCCCHHHHHhhCCCchhhHHHHHHHH-HcCcccccccCCChhHHHHHHH
Q 008358 297 LSLPD-TNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA-RCGAVRANELNQPRDELRKTVT 357 (568)
Q Consensus 297 l~~~g-~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~-~~ga~~~~~~~~~~~~l~~~~~ 357 (568)
++ .| ++++.+|..|+||||+|+..++. +++++|+ ++|+..+..+..+.++++.+.+
T Consensus 160 l~-~g~~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 160 CG-LGKSAVNWQDKQGWTPLFHALAEGHG----DAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HT-TTCCCSCCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred Hh-cCcccccCcCCCCCCHHHHHHHcCCH----HHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence 99 56 99999999999999999997754 7888888 8999988888888888776543
No 33
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.9e-33 Score=270.20 Aligned_cols=223 Identities=26% Similarity=0.253 Sum_probs=203.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 217 (568)
+..+.||||.|+..|+.++++.|++.++......|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCcCCCCCCHHHHHH
Confidence 345789999999999999999999998887788899999999999999999999999998 6678889999999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358 218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297 (568)
Q Consensus 218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll 297 (568)
..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999987 77899999999999999999999999999999 8889999999999999999999999999
Q ss_pred cCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHh
Q 008358 298 SLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLE 368 (568)
Q Consensus 298 ~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 368 (568)
+ .|++++.+|..|+||||+|+..++ .+++++|+++|+..+..+..+.++++.+......++.+.|.
T Consensus 160 ~-~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 160 F-YKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp H-TTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred h-cCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence 9 899999999999999999998775 47889999999998888888888988776655555554443
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=4.7e-34 Score=284.17 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=196.1
Q ss_pred hhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHH
Q 008358 67 KQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLH 146 (568)
Q Consensus 67 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh 146 (568)
.+..|..|.||||+|+..|+.+++++|++. +.+++.. +|+||||
T Consensus 24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~--~g~t~L~ 67 (285)
T 3kea_A 24 TFKADVHGHSASYYAIADNNVRLVCTLLNA----------------------------------GALKNLL--ENEFPLH 67 (285)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----------------------------------TGGGSCC--TTCCHHH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHhC----------------------------------CCCCCCC--CCCCHHH
Confidence 456778888888888888888888888852 3334444 4899999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCC-ChHHHHHHHcCCHHHH
Q 008358 147 IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVV 225 (568)
Q Consensus 147 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv 225 (568)
+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+..| .||||+|+..|+.+++
T Consensus 68 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v 145 (285)
T 3kea_A 68 QAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIV 145 (285)
T ss_dssp HHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999999998 67889999999999999999999999999 67788999999 8999999999999999
Q ss_pred HHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCc
Q 008358 226 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNV 304 (568)
Q Consensus 226 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~g~~~ 304 (568)
++|++++++.... ..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+..|+.+++++|++ .|+++
T Consensus 146 ~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~ 221 (285)
T 3kea_A 146 SYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINI 221 (285)
T ss_dssp HHHHTTSCTTCCC--STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCS
T ss_pred HHHHhCCCccccc--cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCC
Confidence 9999999876221 2899999999999999999999999999 89999999998 999999999999999999 89999
Q ss_pred ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 008358 305 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE 344 (568)
Q Consensus 305 ~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~ 344 (568)
+.+|. .|+..+ ..+++++|+++|+.....
T Consensus 222 ~~~~~-------~a~~~~----~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 222 YSANL-------ENVLLD----DAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp TTTTG-------GGGTTT----CHHHHHHHHHHHHHHTTC
T ss_pred CCCCh-------hhhhcC----CHHHHHHHHHcCCCCCCc
Confidence 99984 333333 458999999999876443
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-35 Score=297.30 Aligned_cols=239 Identities=16% Similarity=0.160 Sum_probs=189.7
Q ss_pred hhHhhhcCCCCChHhHHHHHcCCHHHHHHHHhc-CCccccc-------------cCCC----CchHHHHHhhhhHHHHHH
Q 008358 64 KYVKQVTGRHNDTELHLAAQRGDLGAVKQILYG-IDSQMVG-------------NLSG----AEFDTEVAEIRSSVVNEL 125 (568)
Q Consensus 64 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~-~~~~~~~-------------~~~~----~~l~~a~~~~~~~~v~~L 125 (568)
....+..+..|.|+++ |+.++|+.||+. .+++... ...+ ...+.++..+..++++.|
T Consensus 42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l 116 (327)
T 1sw6_A 42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116 (327)
T ss_dssp SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence 3344556788999988 999999999963 3322200 0011 123556666677788877
Q ss_pred hhhcCcccccc-cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCC---HHHHHHHHHcCCCC
Q 008358 126 LKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGL 201 (568)
Q Consensus 126 l~~~~~~~~~~-~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~---~~~v~~Ll~~~~~~ 201 (568)
++ .+.+++. +|..|+||||+|+..|+.++|++|+++|+++ +..|..|+||||+|+..|+ .++++.|++....+
T Consensus 117 ~~--~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~ 193 (327)
T 1sw6_A 117 PN--TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC 193 (327)
T ss_dssp TT--SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred Hh--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence 74 4677888 8999999999999999999999999999998 6889999999999999998 78888888886677
Q ss_pred ccccCcCCChHHHHHHH----cCCHHHHHHHHcC--------------------CCccccccCCCCCCHHHHHHhCCCHH
Q 008358 202 LEISRSNGKNALHFAAR----QGHVDVVKALLSK--------------------DPQLARRTDKKGQTALHMAVKGQSCE 257 (568)
Q Consensus 202 ~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~ 257 (568)
++..|..|+||||+|+. .|+.+++++|++. +.++ +..|..|+||||.|+.
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~----- 267 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD----- 267 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS-----
T ss_pred ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH-----
Confidence 89999999999999999 9999999999987 5555 6778999999999986
Q ss_pred HHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 008358 258 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 321 (568)
Q Consensus 258 ~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~ 321 (568)
+++|++++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|++.
T Consensus 268 -~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 268 -LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp -HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTCC-
T ss_pred -HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhc
Confidence 89999984 77899999999999999999999999999 8999999999999999999864
No 36
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4e-33 Score=261.99 Aligned_cols=192 Identities=30% Similarity=0.339 Sum_probs=173.5
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
..+.||||.|+..|+.+.++.|+.. .+.+++..|..|+||||+|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~---------------------------------~~~~~~~~~~~g~t~L~~A~~~ 49 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQD---------------------------------TTYQVDEVDTEGNTPLNIAVHN 49 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTC---------------------------------TTCCTTCCCTTSCCHHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHc---------------------------------CCCCCCCCCCCCCCHHHHHHHc
Confidence 4677999999999999999999852 2335677888999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 231 (568)
|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|++.
T Consensus 50 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 50 NDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999998 678889999999999999999999999887888899999999999999999999999999999
Q ss_pred CCccccccCCCCCCHHHHHHhCCC-----HHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 232 DPQLARRTDKKGQTALHMAVKGQS-----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 232 ~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
++...+..|..|+||||+|+..++ .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 129 g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 129 GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 844447889999999999999888 8999999999999 78899999999999999999999999998
No 37
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.2e-33 Score=271.97 Aligned_cols=197 Identities=24% Similarity=0.347 Sum_probs=152.9
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 152 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g 152 (568)
.|.||||.|++.|+.++++.|++. .+.+++.+|..|+||||+|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~---------------------------------~g~~~~~~~~~g~t~L~~A~~~g 48 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF---------------------------------EGCEVHQRGAMGETALHIAALYD 48 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT---------------------------------TCSCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh---------------------------------cCCCcccCCCCCCCHHHHHHHcC
Confidence 477899999999999999988851 24456777888999999999999
Q ss_pred CHHHHHHHHhcCCCCc----ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCc-------------CCChHHHH
Q 008358 153 HHAIVQVLLDHDPSLS----QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS-------------NGKNALHF 215 (568)
Q Consensus 153 ~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~tpLh~ 215 (568)
+.+++++|+++|+++. ...|..|.||||+|+..|+.+++++|+++ +.+++..+. .|.||||+
T Consensus 49 ~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 127 (232)
T 2rfa_A 49 NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSF 127 (232)
T ss_dssp CHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHH
T ss_pred CHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHH
Confidence 9999999999888753 34566888999999999999999998888 445555443 67888888
Q ss_pred HHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHH----HHHHHcCCccc-----cCCCCCCChHHHHHHH
Q 008358 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV----KLLLEADAAIV-----MLPDKFGNTALHVATR 286 (568)
Q Consensus 216 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v----~~Ll~~g~~~~-----~~~d~~G~TpLh~A~~ 286 (568)
|+..|+.+++++|+++|+++ +..|.+|+||||+|+..++.+++ ++|+++|++.. +.+|..|+||||+|+.
T Consensus 128 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~ 206 (232)
T 2rfa_A 128 AACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206 (232)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHH
Confidence 88888888888888887776 66777888888888888887776 77788777632 5677788888888888
Q ss_pred cCcHHHHHHHhcCCCCCcc
Q 008358 287 KKRTEIVTELLSLPDTNVN 305 (568)
Q Consensus 287 ~g~~~iv~~Ll~~~g~~~~ 305 (568)
.|+.+++++|++ +|.+..
T Consensus 207 ~g~~~~v~~Ll~-~g~~~~ 224 (232)
T 2rfa_A 207 EGNIVMFQHLMQ-KRKHIA 224 (232)
T ss_dssp HTCHHHHHHHHH-HHHHC-
T ss_pred cCCHHHHHHHHh-cCccch
Confidence 888888888887 454443
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.5e-33 Score=266.14 Aligned_cols=198 Identities=25% Similarity=0.318 Sum_probs=182.0
Q ss_pred hcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHH
Q 008358 69 VTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIA 148 (568)
Q Consensus 69 ~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~A 148 (568)
..|..|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|
T Consensus 20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~~~~g~t~L~~A 65 (223)
T 2f8y_A 20 QTDRTGETALHLAARYSRSDAAKRLLEA----------------------------------SADANIQDNMGRTPLHAA 65 (223)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHT----------------------------------TCCTTCCCTTSCCHHHHH
T ss_pred ccCCCCCchHHHHHHcCCHHHHHHHHHc----------------------------------CCCCCCcCCCCCCHHHHH
Confidence 3477899999999999999999999852 345677889999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHH
Q 008358 149 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 228 (568)
Q Consensus 149 a~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L 228 (568)
+..|+.+++++|+++++......+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|
T Consensus 66 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (223)
T 2f8y_A 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVL 144 (223)
T ss_dssp HHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 9999999999999999855578899999999999999999999999997 667888999999999999999999999999
Q ss_pred HcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304 (568)
Q Consensus 229 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~ 304 (568)
++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+..
T Consensus 145 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~ 217 (223)
T 2f8y_A 145 LKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR 217 (223)
T ss_dssp HHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred HHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence 9999987 77899999999999999999999999999999 88999999999999999999999999999 67754
No 39
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=265.45 Aligned_cols=195 Identities=24% Similarity=0.240 Sum_probs=175.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhc-CCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc----cccCcCCChHHH
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL----EISRSNGKNALH 214 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tpLh 214 (568)
.|+||||+|+..|+.++++.|++. |.++ +..|..|.||||+|+..|+.+++++|++.+.... +..|.+|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 8887 6789999999999999999999999999854322 556779999999
Q ss_pred HHHHcCCHHHHHHHHcCCCccccccCC-------------CCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358 215 FAARQGHVDVVKALLSKDPQLARRTDK-------------KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281 (568)
Q Consensus 215 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpL 281 (568)
+|+..|+.+++++|+++++++ +..+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L 158 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVL 158 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence 999999999999999999887 44433 799999999999999999999999999 899999999999
Q ss_pred HHHHHcCcHHHH----HHHhcCCCCCc------ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358 282 HVATRKKRTEIV----TELLSLPDTNV------NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA 342 (568)
Q Consensus 282 h~A~~~g~~~iv----~~Ll~~~g~~~------~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~ 342 (568)
|+|+..|+.+++ ++|++ .|++. +.+|..|+||||+|+..++ .+++++|+++|+...
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~----~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGN----IVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTC----HHHHHHHHHHHHHC-
T ss_pred HHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCC----HHHHHHHHhcCccch
Confidence 999999999988 99999 78887 6899999999999998765 478888999887653
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-33 Score=273.01 Aligned_cols=200 Identities=25% Similarity=0.319 Sum_probs=177.8
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChH
Q 008358 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 212 (568)
Q Consensus 136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 212 (568)
.+|.+|+||||+|+..|+.++++.|++.++. ..+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence 4688999999999999999999999998763 2367888999999999999999999999988 67788899999999
Q ss_pred HHHHHHcCCHHHHHHHHcCCCc-----cccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCC-CCChHHHHHHH
Q 008358 213 LHFAARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATR 286 (568)
Q Consensus 213 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~-~G~TpLh~A~~ 286 (568)
||+|+..|+.+++++|++.+++ ..+..|..|+||||+|+..|+.+++++|+++|++ ++.+|. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999864 2467788999999999999999999999999999 778887 99999999999
Q ss_pred cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358 287 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA 342 (568)
Q Consensus 287 ~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~ 342 (568)
.|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|+++|+...
T Consensus 161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPS----TRIQQQLGQLTLENL 211 (236)
T ss_dssp TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSC----HHHHHHHHTTSCGGG
T ss_pred cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCc----hHHHHHHHHcchhhh
Confidence 999999999999 799999999999999999998765 478999999999765
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-33 Score=277.85 Aligned_cols=214 Identities=21% Similarity=0.196 Sum_probs=166.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 217 (568)
+..|.||||.|+..|+.++|++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence 345667777777777777777777777776 55667777777777777777777777776 5566667777777777777
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHH--------------------------cCCcccc
Q 008358 218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--------------------------ADAAIVM 271 (568)
Q Consensus 218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~--------------------------~g~~~~~ 271 (568)
..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++. .+.....
T Consensus 115 ~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 193 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193 (299)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence 777777777777777766 5667777777777777777777666554 2333234
Q ss_pred CCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhH
Q 008358 272 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE 351 (568)
Q Consensus 272 ~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~ 351 (568)
..+..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++. +++++|+++|+..+..+..+.++
T Consensus 194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 194 RHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKE----EACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp CCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCT
T ss_pred hhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCCcCCCCCCH
Confidence 467889999999999999999999999 8999999999999999999998764 78899999999988888888888
Q ss_pred HHHHHHhh
Q 008358 352 LRKTVTQI 359 (568)
Q Consensus 352 l~~~~~~~ 359 (568)
++.+.++.
T Consensus 269 l~~A~~~~ 276 (299)
T 1s70_B 269 FDVADEDI 276 (299)
T ss_dssp TTSCCSGG
T ss_pred HHHHHHHH
Confidence 87665443
No 42
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.5e-33 Score=278.93 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=169.7
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
.+|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..
T Consensus 60 ~~g~t~L~~A~~~g~~~~v~~Ll~----------------------------------~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 60 LENEFPLHQAATLEDTKIVKILLF----------------------------------SGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp CTTCCHHHHHTTSSSCHHHHHHHH----------------------------------TTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----------------------------------CCCCCCCcCCCCCcHHHHHHHc
Confidence 369999999999999999999995 2455777899999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCccccCc-CCChHHHHHHHcCCHHHHHHHH
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSN-ATPLVSAATRGHTAVVNELLSKDGGLLEISRS-NGKNALHFAARQGHVDVVKALL 229 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll 229 (568)
|+.+++++|+++|+++ +..+..| .||||+|+..|+.+++++|++++... .+. .|.||||+|+..|+.+++++|+
T Consensus 106 g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp TCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHH
Confidence 9999999999999998 6778888 89999999999999999999996543 233 8999999999999999999999
Q ss_pred cCCCccccccCCCCCCH-HHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccccc
Q 008358 230 SKDPQLARRTDKKGQTA-LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT 308 (568)
Q Consensus 230 ~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d 308 (568)
++|+++ +..|..|+|| ||+|+..|+.+++++|+++|++ ++.+| +.|+..|+.+++++|++ .|++++..+
T Consensus 182 ~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~-~g~~~~~~~ 251 (285)
T 3kea_A 182 DYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIE-KHVEYKSDS 251 (285)
T ss_dssp HHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHH-HHHHHTTCT
T ss_pred HcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHH-cCCCCCCcc
Confidence 999987 7889999998 9999999999999999999999 67766 35678999999999999 788877655
Q ss_pred C
Q 008358 309 R 309 (568)
Q Consensus 309 ~ 309 (568)
.
T Consensus 252 ~ 252 (285)
T 3kea_A 252 Y 252 (285)
T ss_dssp T
T ss_pred c
Confidence 4
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5.9e-32 Score=253.99 Aligned_cols=194 Identities=23% Similarity=0.282 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218 (568)
Q Consensus 139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 218 (568)
..+.||||.|+..|+.++++.|+..++...+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHH
Confidence 46889999999999999999999998833477899999999999999999999999998 66788899999999999999
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc-----HHHH
Q 008358 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-----TEIV 293 (568)
Q Consensus 219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~-----~~iv 293 (568)
.|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.|...++.+|..|+||||+|+..++ .+++
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 99999999999655544488899999999999999999999999999943389999999999999999998 9999
Q ss_pred HHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 008358 294 TELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 338 (568)
Q Consensus 294 ~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~g 338 (568)
++|++ .|++++.+|..|+||||+|+..++. +++++|+++|
T Consensus 162 ~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~~~~~Ll~~G 201 (201)
T 3hra_A 162 KLLME-NGADQSIKDNSGRTAMDYANQKGYT----EISKILAQYN 201 (201)
T ss_dssp HHHHH-TTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHTCC
T ss_pred HHHHH-CCCCCCccCCCCCCHHHHHHHcCCH----hHHHHHHhcC
Confidence 99999 8999999999999999999987654 7888888776
No 44
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.6e-33 Score=275.00 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=163.1
Q ss_pred hhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCccccc----ccCCCCCc
Q 008358 68 QVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLT----RKNRSGFD 143 (568)
Q Consensus 68 ~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~----~~~~~g~T 143 (568)
+..|..|.||||.||+.|+.++|+.|++... ..+.+++ ..|..|+|
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~------------------------------~~~~~~~~~~~~~~~~g~t 56 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQ------------------------------RSKKRLTDSEFKDPETGKT 56 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHH------------------------------HSCCCTTSGGGSCTTTCCC
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHh------------------------------hcccccCCcccccCcCCCC
Confidence 4467889999999999999999999985210 0111222 35788999
Q ss_pred HHHHHHHc---CCHHHHHHHHhcCCCCc----------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCc---
Q 008358 144 PLHIAAVQ---GHHAIVQVLLDHDPSLS----------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS--- 207 (568)
Q Consensus 144 pLh~Aa~~---g~~~iv~~Ll~~~~~~~----------~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--- 207 (568)
|||+|+.. |+.++|++|+++|++.. ...|..|.||||+|+..|+.+++++|+++ +.+++..+.
T Consensus 57 pL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~ 135 (273)
T 2pnn_A 57 CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDF 135 (273)
T ss_dssp HHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGG
T ss_pred HHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccc
Confidence 99999987 99999999999986531 12456899999999999999999999988 566777776
Q ss_pred -----------CCChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHhCCC---------HHHHHHHHH
Q 008358 208 -----------NGKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLE 264 (568)
Q Consensus 208 -----------~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~ 264 (568)
.|.||||+|+..|+.+++++|++ .+.++ +.+|.+|+||||+|+..|+ .+++++|++
T Consensus 136 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~ 214 (273)
T 2pnn_A 136 FKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214 (273)
T ss_dssp GSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence 78999999999999999999999 77877 7788899999999998877 788999999
Q ss_pred cCCccc------cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC-CcccccCCCCCHHH
Q 008358 265 ADAAIV------MLPDKFGNTALHVATRKKRTEIVTELLSLPDT-NVNALTRDHKTALD 316 (568)
Q Consensus 265 ~g~~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~-~~~~~d~~G~T~L~ 316 (568)
+|+++. +.+|..|+||||+|+..|+.+++++|++ .|+ |+......+.+|-|
T Consensus 215 ~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHTC--------------
T ss_pred hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHH-CCCCCchhhhhhhhhccC
Confidence 888832 3588889999999999999999999998 677 77777766666543
No 45
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-33 Score=273.76 Aligned_cols=214 Identities=23% Similarity=0.260 Sum_probs=169.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-------cccCCCCCCcHHHHHHHcCCHH-HHHHHHHcCCCCccccCc
Q 008358 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL-------SQTTGPSNATPLVSAATRGHTA-VVNELLSKDGGLLEISRS 207 (568)
Q Consensus 136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-------~~~~~~~g~tpL~~Aa~~g~~~-~v~~Ll~~~~~~~~~~d~ 207 (568)
.+|..+.+||+.|+..|+.++|++|++.+++. ....+..|.|||+.|+..++.+ ++++|++. +.+++..|.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gadvn~~d~ 84 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLGVNVTSQ 84 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C-CCCTTCCCT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCCCCCcCC
Confidence 45677889999999999999999999998753 2456678999999999988764 77888877 678899999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 287 (568)
Q Consensus 208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~ 287 (568)
+|+||||+|+..|+.+++++|++.++++ +..+.+|.||+|.|+..++.+++++|++.|++ ++.+|..|+||||+|+..
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence 9999999999999999999999999987 77899999999999999999999999999999 899999999999999999
Q ss_pred CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHH
Q 008358 288 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT 357 (568)
Q Consensus 288 g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~ 357 (568)
|+.+++++|++ .|+++|.+|..|+||||+|+..++. +++++|+++|++.+..+..++++++.+.+
T Consensus 163 g~~~~v~~Ll~-~gadvn~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 163 GHHELVALLLQ-HGASINASNNKGNTALHEAVIEKHV----FVVELLLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TCGGGHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCH----HHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred CCHHHHHHHHH-CCCCCCccccCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence 99999999999 8999999999999999999998764 78999999999998888888898887654
No 46
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=257.60 Aligned_cols=229 Identities=20% Similarity=0.193 Sum_probs=206.6
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 213 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 213 (568)
++..|..|.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.......+..|.|||
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L 80 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence 3456888999999999999999999999999998 678899999999999999999999999997665556666799999
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc-HHH
Q 008358 214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEI 292 (568)
Q Consensus 214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~-~~i 292 (568)
|+|+..|+.+++++|++.++++ +..|..|.||||.|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++ .++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence 9999999999999999999988 77899999999999999999999999999999 88899999999999997766 789
Q ss_pred HHHHhcCCCCCcccccC-CCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChhHHHHHHHhhhhhhhhhHhHh
Q 008358 293 VTELLSLPDTNVNALTR-DHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT 370 (568)
Q Consensus 293 v~~Ll~~~g~~~~~~d~-~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 370 (568)
+++|++ .|++++..+. .|.||||+|+..++. +++++|+++|+..+.....+.+++..++.....++.+.|.+.
T Consensus 159 ~~~L~~-~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 159 TRLLLT-FNVSVNLGDKYHKNTALHWAVLAGNT----TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHH-TTCCTTCCCTTTCCCHHHHHHHHTCH----HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHh-cCCCcchhhccCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 999998 8999999997 999999999987654 788999999999988888899999999888877777666543
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=1.4e-31 Score=244.40 Aligned_cols=160 Identities=34% Similarity=0.460 Sum_probs=145.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCH
Q 008358 143 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 222 (568)
Q Consensus 143 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~ 222 (568)
++|+.||+.|+.++|+.|+++|+++ +..|..|.||||+|+..++.++++.|++. +.+++.+|.+|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCH
Confidence 5799999999999999999999998 67899999999999999999999999988 677889999999999999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 008358 223 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302 (568)
Q Consensus 223 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~ 302 (568)
+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|+
T Consensus 84 ~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA 160 (169)
T 4gpm_A 84 EVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGG 160 (169)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C--
T ss_pred HHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCC
Confidence 9999999999997 78899999999999999999999999999999 88999999999999999999999999999 899
Q ss_pred Ccccc
Q 008358 303 NVNAL 307 (568)
Q Consensus 303 ~~~~~ 307 (568)
+++..
T Consensus 161 ~ie~~ 165 (169)
T 4gpm_A 161 WLEHH 165 (169)
T ss_dssp -----
T ss_pred CcCCC
Confidence 98753
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.5e-32 Score=265.17 Aligned_cols=194 Identities=25% Similarity=0.279 Sum_probs=143.2
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccc----cCCCCCcHHHHH
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTR----KNRSGFDPLHIA 148 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~----~~~~g~TpLh~A 148 (568)
.|.||||.||+.|+.+.|+.|++ .|+ ..+.+++. +|..|+||||+|
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~----------------------------~l~--~~g~~i~~~~~~~d~~g~t~L~~A 50 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLE----------------------------YLR--WNSKYLTDSAYTEGSTGKTCLMKA 50 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHH----------------------------HHH--HHTCCTTSGGGSBTTTTBCHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHH----------------------------HHH--HcCCCcccccccCCCCCCCHHHHH
Confidence 37799999999999987766653 122 12445666 789999999999
Q ss_pred HHc---CCHHHHHHHHhcCCCCccc----------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcC-------
Q 008358 149 AVQ---GHHAIVQVLLDHDPSLSQT----------TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN------- 208 (568)
Q Consensus 149 a~~---g~~~iv~~Ll~~~~~~~~~----------~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~------- 208 (568)
+.. |+.+++++|+++|++.... .|..|.||||+|+..|+.+++++|+++ +.+++..+..
T Consensus 51 ~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~ 129 (256)
T 2etb_A 51 VLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQ 129 (256)
T ss_dssp HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCS
T ss_pred HHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccc
Confidence 999 9999999999998876322 246688888888888888888888887 5566666665
Q ss_pred ------CChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHh--CCCHH-------HHHHHHHcCCccc
Q 008358 209 ------GKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVK--GQSCE-------VVKLLLEADAAIV 270 (568)
Q Consensus 209 ------g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~g~~~~ 270 (568)
|.||||+|+..|+.+++++|++ .|+++ +..|.+|+||||+|+. .++.+ ++++|+++|+++.
T Consensus 130 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~ 208 (256)
T 2etb_A 130 GTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC 208 (256)
T ss_dssp SSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcc
Confidence 7777777777777777777777 66665 5666777777777776 66666 7777777776621
Q ss_pred ------cCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 271 ------MLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 271 ------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
+.+|..|+||||+|+..|+.+++++|++
T Consensus 209 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 242 (256)
T 2etb_A 209 PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242 (256)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence 6667777777777777777777777766
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.5e-32 Score=265.96 Aligned_cols=196 Identities=24% Similarity=0.252 Sum_probs=172.8
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHhcCCCCcc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCc-------
Q 008358 140 SGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL------- 202 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~------- 202 (568)
.|+||||.|+..|+.+ ++++|++.|.+++. ..|..|.||||+|+.. |+.+++++|++.+....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 4789999999999997 66777789999843 3799999999999999 99999999998843221
Q ss_pred ---cccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCC-------------CCCHHHHHHhCCCHHHHHHHHH--
Q 008358 203 ---EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-------------GQTALHMAVKGQSCEVVKLLLE-- 264 (568)
Q Consensus 203 ---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~~v~~Ll~-- 264 (568)
...|..|.||||+|+..|+.+++++|+++|+++ +..|.. |+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 123467999999999999999999999999987 566665 9999999999999999999999
Q ss_pred -cCCccccCCCCCCChHHHHHHH--cCcHH-------HHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCchhh
Q 008358 265 -ADAAIVMLPDKFGNTALHVATR--KKRTE-------IVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSSEEA 327 (568)
Q Consensus 265 -~g~~~~~~~d~~G~TpLh~A~~--~g~~~-------iv~~Ll~~~g~~~-------~~~d~~G~T~L~~A~~~~~~~~~ 327 (568)
.|++ ++.+|.+|+||||+|+. .++.+ ++++|++ .|+++ +.+|..|+||||+|+..++.
T Consensus 160 ~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~--- 234 (256)
T 2etb_A 160 HQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKI--- 234 (256)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH---
T ss_pred ccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCH---
Confidence 8999 89999999999999999 88888 9999999 89999 99999999999999998764
Q ss_pred HHHHHHHHHcCcccc
Q 008358 328 SEIKDCLARCGAVRA 342 (568)
Q Consensus 328 ~~i~~~L~~~ga~~~ 342 (568)
+++++|+++|+...
T Consensus 235 -~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 235 -EIFRHILQREFSGA 248 (256)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCCC
Confidence 78888988887643
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.5e-32 Score=266.33 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=172.2
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCcc---cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCC---
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGG--- 200 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~---~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~--- 200 (568)
.+..|..|+||||+|+..|+.++|+.|++ .+.++.. ..|..|.||||+|+.. |+.+++++|++.+..
T Consensus 6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~ 85 (273)
T 2pnn_A 6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS 85 (273)
T ss_dssp -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence 45678899999999999999999998887 4555422 4578999999999987 999999999998432
Q ss_pred -------CccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCC--------------CCCCHHHHHHhCCCHHHH
Q 008358 201 -------LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVV 259 (568)
Q Consensus 201 -------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~~~v 259 (568)
.....|..|.||||+|+..|+.+++++|+++|+++ +..+. .|+||||+|+..|+.+++
T Consensus 86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence 11225678999999999999999999999999988 55565 799999999999999999
Q ss_pred HHHHH---cCCccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCcc-------cccCCCCCHHHHHhh
Q 008358 260 KLLLE---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNVN-------ALTRDHKTALDIAEG 320 (568)
Q Consensus 260 ~~Ll~---~g~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~~-------~~d~~G~T~L~~A~~ 320 (568)
++|++ .|++ ++.+|.+|+||||+|+..|+ .+++++|++ .|++++ .+|..|+||||+|+.
T Consensus 165 ~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 165 KFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHH
Confidence 99999 8999 88999999999999999988 899999999 899987 599999999999999
Q ss_pred CCCchhhHHHHHHHHHcCcc
Q 008358 321 LPSSEEASEIKDCLARCGAV 340 (568)
Q Consensus 321 ~~~~~~~~~i~~~L~~~ga~ 340 (568)
.++. +++++|+++|+.
T Consensus 243 ~g~~----~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 243 SGKI----GVLAYILQREIH 258 (273)
T ss_dssp TTCH----HHHHHHHHHHTC
T ss_pred hChH----HHHHHHHHCCCC
Confidence 8764 789999999994
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3e-30 Score=235.57 Aligned_cols=157 Identities=34% Similarity=0.523 Sum_probs=144.1
Q ss_pred hHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHH
Q 008358 76 TELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 155 (568)
Q Consensus 76 t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~ 155 (568)
++|+.||+.|+.++|+.||+ .+++++.+|..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~----------------------------------~Gadvn~~d~~g~t~l~~a~~~~~~~ 51 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE----------------------------------NGADVNASDSDGRTPLHHAAENGHKE 51 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHH----------------------------------CCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 47999999999999999985 35567889999999999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCcc
Q 008358 156 IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 235 (568)
Q Consensus 156 iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~ 235 (568)
+++.|+++|+++ +..|..|+||||+|+..|+.+++++|+++ +.+++.+|.+|+||||+|+..|+.+++++|+++|+++
T Consensus 52 ~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~ 129 (169)
T 4gpm_A 52 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129 (169)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 999999999998 77899999999999999999999999998 6778999999999999999999999999999999998
Q ss_pred ccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc
Q 008358 236 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 269 (568)
Q Consensus 236 ~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~ 269 (568)
+.+|.+|+||||+|++.|+.+++++|+++|+++
T Consensus 130 -~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 130 -NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp -TCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred -cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 788999999999999999999999999999984
No 52
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=256.37 Aligned_cols=191 Identities=26% Similarity=0.334 Sum_probs=163.5
Q ss_pred CchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHH----
Q 008358 108 AEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA---- 183 (568)
Q Consensus 108 ~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa---- 183 (568)
++++.++..++.+.++.++....+..++.+|.+|+||||+|+..|+.++|++|++.|+...+..|..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 3556666667777777766655555678889999999999999999999999999998334788899999999999
Q ss_pred -HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358 184 -TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 262 (568)
Q Consensus 184 -~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 262 (568)
..++.++++.|++. +...+..+..|.||||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 66889999999988 4566777888999999999999999999999999987 77899999999999999999999999
Q ss_pred HH-cCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCC
Q 008358 263 LE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 301 (568)
Q Consensus 263 l~-~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g 301 (568)
++ .|++ ++.+|.+|+||||+|+..|+.+++++|++..+
T Consensus 236 l~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 236 LAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRMN 274 (276)
T ss_dssp HTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred HhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence 99 7888 88899999999999999999999999998443
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=3.4e-31 Score=259.45 Aligned_cols=198 Identities=22% Similarity=0.193 Sum_probs=168.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHh----cCCCCccc---CCCCCCcHHHHHH---HcCCHHHHHHHHHcCC--------
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQT---TGPSNATPLVSAA---TRGHTAVVNELLSKDG-------- 199 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~~~---~~~~g~tpL~~Aa---~~g~~~~v~~Ll~~~~-------- 199 (568)
+..|+|+||.|++.|+.++++.|++ .++++... .|..|.||||+|+ ..|+.+++++|++.+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4578899999999999995555544 88887422 2477999999999 6799999999998743
Q ss_pred --CCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccC--------------CCCCCHHHHHHhCCCHHHHHHHH
Q 008358 200 --GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD--------------KKGQTALHMAVKGQSCEVVKLLL 263 (568)
Q Consensus 200 --~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~~~v~~Ll 263 (568)
...+..|..|.||||+|+..|+.+++++|+++|+++ +..| ..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 223445568999999999999999999999999987 5556 58999999999999999999999
Q ss_pred H---cCCccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCc
Q 008358 264 E---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSS 324 (568)
Q Consensus 264 ~---~g~~~~~~~d~~G~TpLh~A~~~g~---------~~iv~~Ll~~~g~~~-------~~~d~~G~T~L~~A~~~~~~ 324 (568)
+ .|++ ++.+|..|+||||+|+..++ .+++++|++ .|+++ +.+|.+|+||||+|+..++.
T Consensus 161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 9 8898 88999999999999998887 799999999 89998 78999999999999998764
Q ss_pred hhhHHHHHHHHHcCcccc
Q 008358 325 EEASEIKDCLARCGAVRA 342 (568)
Q Consensus 325 ~~~~~i~~~L~~~ga~~~ 342 (568)
+++++|+++|+...
T Consensus 239 ----~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 239 ----GIFQHIIRREIADA 252 (260)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCCCcc
Confidence 78888998887654
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=7.8e-31 Score=256.90 Aligned_cols=201 Identities=25% Similarity=0.265 Sum_probs=168.9
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCccccccc----CCCCCcHHH
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRK----NRSGFDPLH 146 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~----~~~g~TpLh 146 (568)
+..|.|+||.||+.|+.+.++.|++ .++. .+.+++.. |..|+||||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~----------------------------~l~~--~~~~~~~~~~~~~~~g~t~L~ 51 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLS----------------------------FLLT--HKKRLTDEEFREPSTGKTCLP 51 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHH----------------------------HHHH--HTCCTTSGGGSCTTTCCCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHH----------------------------HHHh--cCCCcchhhhhccCCCCcHHH
Confidence 4567899999999999998877774 1111 12233333 477999999
Q ss_pred HHH---HcCCHHHHHHHHhcCCCC----------cccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-------
Q 008358 147 IAA---VQGHHAIVQVLLDHDPSL----------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR------- 206 (568)
Q Consensus 147 ~Aa---~~g~~~iv~~Ll~~~~~~----------~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d------- 206 (568)
+|+ ..|+.+++++|++.|++. ....|..|.||||+|+..|+.+++++|+++ +.+++..+
T Consensus 52 ~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~ 130 (260)
T 3jxi_A 52 KALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQP 130 (260)
T ss_dssp HHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSS
T ss_pred HHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCc
Confidence 999 779999999999987542 133455899999999999999999999998 56777777
Q ss_pred -------cCCChHHHHHHHcCCHHHHHHHHc---CCCccccccCCCCCCHHHHHHhCCC---------HHHHHHHHHcCC
Q 008358 207 -------SNGKNALHFAARQGHVDVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADA 267 (568)
Q Consensus 207 -------~~g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~g~ 267 (568)
..|.||||+|+..|+.+++++|++ .+.++ +.+|..|+||||+|+..++ .+++++|+++|+
T Consensus 131 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 209 (260)
T 3jxi_A 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209 (260)
T ss_dssp SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCc
Confidence 589999999999999999999999 88887 7889999999999998777 799999999999
Q ss_pred ccc------cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 008358 268 AIV------MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 304 (568)
Q Consensus 268 ~~~------~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~ 304 (568)
++. +.+|..|+||||+|+..|+.+++++|++ +|.+.
T Consensus 210 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~ 251 (260)
T 3jxi_A 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR-REIAD 251 (260)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HHHHH
T ss_pred ccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCCc
Confidence 832 6799999999999999999999999998 55543
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=9.9e-30 Score=232.82 Aligned_cols=170 Identities=23% Similarity=0.229 Sum_probs=151.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 220 (568)
+.||||.|+..|+.++++.|++.+++..+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCC
Confidence 468999999999999999999999886678899999999999999999999999988 5678888999999999999999
Q ss_pred CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 008358 221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP 300 (568)
Q Consensus 221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~ 300 (568)
+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~ 157 (172)
T 3v30_A 81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-H 157 (172)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence 999999999999987 77899999999999999999999999999999 88899999999999999999999999999 8
Q ss_pred CCCcccccCCCCCH
Q 008358 301 DTNVNALTRDHKTA 314 (568)
Q Consensus 301 g~~~~~~d~~G~T~ 314 (568)
++++...|..|.||
T Consensus 158 ~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHSCC-------
T ss_pred HHHHhcccCCCCCC
Confidence 99999999888887
No 56
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=1.2e-30 Score=264.86 Aligned_cols=259 Identities=14% Similarity=0.062 Sum_probs=195.5
Q ss_pred CChHhHHHHHcCCHHHHHHHHh-cCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccc---------------c
Q 008358 74 NDTELHLAAQRGDLGAVKQILY-GIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTR---------------K 137 (568)
Q Consensus 74 g~t~Lh~Aa~~g~~~~v~~LL~-~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~---------------~ 137 (568)
+.+|+| ....++|++|++ +.+.+..+..+.++++ |+.++++.||+.+...+.+. +
T Consensus 23 ~~~~~~----~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~ 93 (327)
T 1sw6_A 23 TAGPII----TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 93 (327)
T ss_dssp --CCEE----ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------
T ss_pred cccchh----hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccc
Confidence 335665 355577999997 4555555555666655 89999999998764432210 1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 217 (568)
.....+.+|+|+..+..+++++|++.|.+++...|..|.||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+
T Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~ 172 (327)
T 1sw6_A 94 GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAV 172 (327)
T ss_dssp ----------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHH
T ss_pred cCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence 111223458888888999999999999999544899999999999999999999999999 6788999999999999999
Q ss_pred HcCC---HHHHHHHHcCCCccccccCCCCCCHHHHHHh----CCCHHHHHHHHHc--------------------CCccc
Q 008358 218 RQGH---VDVVKALLSKDPQLARRTDKKGQTALHMAVK----GQSCEVVKLLLEA--------------------DAAIV 270 (568)
Q Consensus 218 ~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~~Ll~~--------------------g~~~~ 270 (568)
..|+ .++++.|++.+....+..|..|+||||+|+. .|+.+++++|++. |++ +
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~ 251 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-P 251 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-c
Confidence 9998 6788888887744448889999999999999 8999999999987 667 7
Q ss_pred cCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccccCCChh
Q 008358 271 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD 350 (568)
Q Consensus 271 ~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~ 350 (568)
+.+|..|+||||+|+. +++|++ . ++|.+|.+|+||||+|+..++ .+++++|+++|++.+..+..+++
T Consensus 252 ~~~~~~g~t~L~~a~~------~~~Ll~-~--~~n~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~Gad~~~~d~~G~T 318 (327)
T 1sw6_A 252 NDKNGERKDSILENLD------LKWIIA-N--MLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGADPFIANKSGLR 318 (327)
T ss_dssp --------CHHHHHCS------HHHHHH-H--TTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ccccccCCChhHHHHH------HHHHHH-h--CCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCC
Confidence 8899999999999985 888988 3 689999999999999999765 48999999999999888888888
Q ss_pred HHHHHH
Q 008358 351 ELRKTV 356 (568)
Q Consensus 351 ~l~~~~ 356 (568)
+++.++
T Consensus 319 pL~~A~ 324 (327)
T 1sw6_A 319 PVDFGA 324 (327)
T ss_dssp GGGGTC
T ss_pred HHHHHH
Confidence 876543
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=5.3e-29 Score=232.33 Aligned_cols=161 Identities=24% Similarity=0.289 Sum_probs=149.4
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 213 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 213 (568)
++.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence 5678999999999999999999999999999987 67788999999999999999999999998 567888899999999
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHH
Q 008358 214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 293 (568)
Q Consensus 214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv 293 (568)
|+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999887 77899999999999999999999999999999 888999999999999999999999
Q ss_pred HHHhc
Q 008358 294 TELLS 298 (568)
Q Consensus 294 ~~Ll~ 298 (568)
++|++
T Consensus 184 ~~Ll~ 188 (192)
T 2rfm_A 184 KIFTE 188 (192)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99987
No 58
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=251.58 Aligned_cols=193 Identities=25% Similarity=0.278 Sum_probs=175.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC-CcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH--
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA-- 217 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~-- 217 (568)
+++++|.|+..|+.+.++.+++.+.+ ..+..|..|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 45789999999999999999987655 126788999999999999999999999999976689999999999999999
Q ss_pred ---HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHH
Q 008358 218 ---RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 294 (568)
Q Consensus 218 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~ 294 (568)
..++.++++.|++.+... +..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 668899999999999776 67788999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 008358 295 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 339 (568)
Q Consensus 295 ~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga 339 (568)
+|++..|++++.+|.+|+||||+|+..++. +++++|++++.
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~----~iv~~Ll~~~~ 274 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQS----EIASMLYSRMN 274 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHHCC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCH----HHHHHHHhccC
Confidence 999978999999999999999999987654 67777776653
No 59
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=8.5e-29 Score=224.06 Aligned_cols=159 Identities=25% Similarity=0.325 Sum_probs=147.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 219 (568)
...||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+. |+.+++++|+++ +.+++..|..|.||||+|+..
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 80 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARA 80 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHc
Confidence 4569999999999999999999999998 6788999999999999 999999999998 667888999999999999999
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358 220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299 (568)
Q Consensus 220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 299 (568)
|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++.++.+|..|+||||+|+..|+.+++++|++
T Consensus 81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~- 158 (162)
T 1ihb_A 81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA- 158 (162)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence 9999999999999887 77899999999999999999999999999998778999999999999999999999999999
Q ss_pred CCCC
Q 008358 300 PDTN 303 (568)
Q Consensus 300 ~g~~ 303 (568)
.|+|
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 7775
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.7e-28 Score=224.55 Aligned_cols=170 Identities=24% Similarity=0.320 Sum_probs=148.5
Q ss_pred CChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCC
Q 008358 74 NDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 153 (568)
Q Consensus 74 g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~ 153 (568)
+.||||.||..|+.+.++.|++.. ...++.+|..|+||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~---------------------------------~~~~~~~~~~g~t~L~~A~~~~~ 48 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG---------------------------------DNLVNKPDERGFTPLIWASAFGE 48 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC---------------------------------SGGGGCCCTTSCCHHHHHHHTTC
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC---------------------------------cccccCCCCCCCCHHHHHHHcCC
Confidence 458999999999999999999632 22356778899999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCC
Q 008358 154 HAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 233 (568)
Q Consensus 154 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 233 (568)
.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 49 ~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga 126 (172)
T 3v30_A 49 IETVRFLLEWGADP-HILAKERESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126 (172)
T ss_dssp HHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999998 67889999999999999999999999988 66788999999999999999999999999999999
Q ss_pred ccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChH
Q 008358 234 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 280 (568)
Q Consensus 234 ~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~Tp 280 (568)
++ +..|..|+||||+|+..|+.+++++|++++++ ....+..|.||
T Consensus 127 ~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~-~~~~~~~~~~p 171 (172)
T 3v30_A 127 DL-TTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP 171 (172)
T ss_dssp CT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-HSCC-------
T ss_pred Cc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH-HhcccCCCCCC
Confidence 97 77899999999999999999999999999998 67778888887
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5e-28 Score=220.33 Aligned_cols=155 Identities=27% Similarity=0.344 Sum_probs=130.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 219 (568)
.|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence 4778888888888888888888888776 66788888888888888888888888887 566777788888888888888
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888877 66788888888888888888888888888888 67788888888888888888888888877
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=6.3e-28 Score=220.30 Aligned_cols=157 Identities=29% Similarity=0.407 Sum_probs=143.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 217 (568)
...+.|+||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence 456778999999999999999999999998 67788999999999999999999999988 5677888999999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358 218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 297 (568)
Q Consensus 218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll 297 (568)
..|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 999999999999999887 77889999999999999999999999999999 7889999999999999999999999998
Q ss_pred c
Q 008358 298 S 298 (568)
Q Consensus 298 ~ 298 (568)
+
T Consensus 167 ~ 167 (169)
T 2y1l_E 167 K 167 (169)
T ss_dssp T
T ss_pred H
Confidence 7
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=5e-28 Score=225.74 Aligned_cols=166 Identities=24% Similarity=0.277 Sum_probs=152.8
Q ss_pred hhHhhhcCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCc
Q 008358 64 KYVKQVTGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFD 143 (568)
Q Consensus 64 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~T 143 (568)
..+.+..|..|.||||.|+..|+.+++++|++. +.+++.+|..|+|
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------------------~~~~~~~~~~g~t 70 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVEN----------------------------------FDKLEDKDIEGST 70 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHH----------------------------------HCCTTCCCTTSCC
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHh----------------------------------ccccccccccCcc
Confidence 455677899999999999999999999999952 3346677889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHH
Q 008358 144 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 223 (568)
Q Consensus 144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~ 223 (568)
|||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+
T Consensus 71 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~ 148 (192)
T 2rfm_A 71 ALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSE 148 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 999999999999999999999998 67889999999999999999999999998 6778899999999999999999999
Q ss_pred HHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358 224 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266 (568)
Q Consensus 224 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 266 (568)
++++|+++|+++ +..|..|.||||+|+..|+.+++++|++.+
T Consensus 149 ~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 149 IVKKLLELGADI-SARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999997 788999999999999999999999999875
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=5.1e-28 Score=218.91 Aligned_cols=159 Identities=26% Similarity=0.334 Sum_probs=144.9
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 152 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g 152 (568)
...||||.|+..|+.+++++|++ .+.+++.+|..|+||||+|+. |
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~----------------------------------~~~~~~~~~~~g~t~L~~A~~-~ 48 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ----------------------------------NNVNVNAQNGFGRTALQVMKL-G 48 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT----------------------------------SCCCTTCCCTTSCCHHHHCCS-S
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh----------------------------------CCCCccccCccCccHHHHHHc-C
Confidence 34589999999999999999985 234567788999999999999 9
Q ss_pred CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358 153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232 (568)
Q Consensus 153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 232 (568)
+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..|+.+++++|++++
T Consensus 49 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 126 (162)
T 1ihb_A 49 NPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 126 (162)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred cHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence 999999999999998 67889999999999999999999999998 5778899999999999999999999999999999
Q ss_pred CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 233 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
++..+..|..|+||||+|+..|+.+++++|+++|++
T Consensus 127 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 987688999999999999999999999999999975
No 65
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.3e-28 Score=223.59 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=115.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 219 (568)
++.++||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHc
Confidence 4566777777777777777777775544456666777777777777777777777766 455666667777777777777
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358 220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 299 (568)
Q Consensus 220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 299 (568)
|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++
T Consensus 83 ~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~- 159 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK- 159 (179)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-
Confidence 7777777777777665 55667777777777777777777777777776 66667777777777777777777777776
Q ss_pred CCCCcccccCCC
Q 008358 300 PDTNVNALTRDH 311 (568)
Q Consensus 300 ~g~~~~~~d~~G 311 (568)
.|++++..+.++
T Consensus 160 ~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 MGQNLNRIPYKD 171 (179)
T ss_dssp TTCCCSCBCCCC
T ss_pred hhcCcccCCccc
Confidence 677766655443
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.1e-27 Score=218.01 Aligned_cols=161 Identities=24% Similarity=0.321 Sum_probs=148.4
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcC
Q 008358 73 HNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 152 (568)
Q Consensus 73 ~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g 152 (568)
.|.||||.|+..|+.+++++|++. +.+++.+|..|+||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~----------------------------------~~~~~~~~~~g~t~L~~A~~~~ 47 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ----------------------------------ENVINHTDEEGFTPLMWAAAHG 47 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH----------------------------------SSCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc----------------------------------CCCcCCCCCCCCCHHHHHHHCC
Confidence 578999999999999999999952 3446778899999999999999
Q ss_pred CHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCC
Q 008358 153 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 232 (568)
Q Consensus 153 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 232 (568)
+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++++
T Consensus 48 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (167)
T 3v31_A 48 QIAVVEFLLQNGADP-QLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125 (167)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999998 67889999999999999999999999998 6678889999999999999999999999999999
Q ss_pred CccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccc
Q 008358 233 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 270 (568)
Q Consensus 233 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~ 270 (568)
+++ +..|..|+||||+|+..|+.+++++|++++.++.
T Consensus 126 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 126 ADP-TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp CCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 988 7789999999999999999999999999987743
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.4e-27 Score=214.25 Aligned_cols=151 Identities=28% Similarity=0.360 Sum_probs=137.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 220 (568)
+.||||.|+..|+.+++++|+++|++.. .+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcC
Confidence 3589999999999999999999998863 588899999999999999999999987 5667888999999999999999
Q ss_pred CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999887 77889999999999999999999999999998 788999999999999999999999876
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5e-30 Score=246.51 Aligned_cols=185 Identities=17% Similarity=0.104 Sum_probs=164.7
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 213 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 213 (568)
.+..+.+|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.|||
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpL 91 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPL 91 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHH
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHH
Confidence 4455677889999999999999999999999998 67899999999999999999999999998 677899999999999
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHH--HhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHH
Q 008358 214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 291 (568)
Q Consensus 214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~ 291 (568)
|+|+..|+.+++++|++.|+++....+.+|+||||+| +..|+.+++++|++.|++ ++.+|..|.||+|.++....
T Consensus 92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~-- 168 (229)
T 2vge_A 92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFG-- 168 (229)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSST--
T ss_pred HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhccc--
Confidence 9999999999999999999998444357999999999 999999999999999999 88899999999997655543
Q ss_pred HHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCch
Q 008358 292 IVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSE 325 (568)
Q Consensus 292 iv~~Ll~~~g~~--~~~~d~~G~T~L~~A~~~~~~~ 325 (568)
.++|++ .|++ ++.+|.+|+||||+|+..++.+
T Consensus 169 -~~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~ 202 (229)
T 2vge_A 169 -DELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG 202 (229)
T ss_dssp -TBCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred -cccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence 356676 7888 7889999999999999987654
No 69
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=6.8e-28 Score=218.97 Aligned_cols=158 Identities=30% Similarity=0.349 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253 (568)
Q Consensus 174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 253 (568)
.|.||||.|+..|+.++++.|++..+...+..+..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence 33444444444444444444444333333444444445555555555555555555544444 44445555555555555
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 008358 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 333 (568)
Q Consensus 254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~ 333 (568)
|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|.. ++ .+++++
T Consensus 86 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~a~~-~~----~~i~~~ 158 (165)
T 3twr_A 86 GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQ-HGADPTKKNRDGNTPLDLVKD-GD----TDIQDL 158 (165)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTGGGSCT-TC----HHHHHH
T ss_pred CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCChhHhHhc-CC----hHHHHH
Confidence 555555555555555 44455555555555555555555555555 455555555555555555443 21 245555
Q ss_pred HHHcCc
Q 008358 334 LARCGA 339 (568)
Q Consensus 334 L~~~ga 339 (568)
|.+.|+
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 555544
No 70
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=9.3e-28 Score=218.08 Aligned_cols=161 Identities=27% Similarity=0.256 Sum_probs=147.3
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216 (568)
Q Consensus 137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 216 (568)
.|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence 4778999999999999999999999976655577888899999999999999999999998 667889999999999999
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence 9999999999999999998 77899999999999999999999999999999 88999999999999877 899999999
Q ss_pred hcCCCC
Q 008358 297 LSLPDT 302 (568)
Q Consensus 297 l~~~g~ 302 (568)
++ .|+
T Consensus 160 ~~-~gA 164 (165)
T 3twr_A 160 RG-DAA 164 (165)
T ss_dssp HT-C--
T ss_pred hh-ccc
Confidence 98 554
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.5e-27 Score=215.38 Aligned_cols=161 Identities=30% Similarity=0.404 Sum_probs=146.6
Q ss_pred cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHH
Q 008358 170 TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 249 (568)
Q Consensus 170 ~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~ 249 (568)
.....+.+||+.|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 3455678999999999999999999998 6678889999999999999999999999999999987 7789999999999
Q ss_pred HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHH
Q 008358 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE 329 (568)
Q Consensus 250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~ 329 (568)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++. +
T Consensus 87 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~----~ 160 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNE----D 160 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----H
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----H
Confidence 9999999999999999999 88899999999999999999999999999 7999999999999999999987754 6
Q ss_pred HHHHHHHcC
Q 008358 330 IKDCLARCG 338 (568)
Q Consensus 330 i~~~L~~~g 338 (568)
++++|+++|
T Consensus 161 ~~~~L~~~G 169 (169)
T 2y1l_E 161 LAEILQKLN 169 (169)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHcC
Confidence 778887765
No 72
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.7e-27 Score=216.56 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=152.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh
Q 008358 173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252 (568)
Q Consensus 173 ~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 252 (568)
.++.+|||.|+..|+.++++.|++..+.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 457899999999999999999999988889999999999999999999999999999999987 7789999999999999
Q ss_pred CCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 008358 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD 332 (568)
Q Consensus 253 ~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~ 332 (568)
.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|... ...++++
T Consensus 82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~----~~~~~~~ 155 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAP----LRELLRE 155 (179)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSSBCCTTSCCGGGGSCHH----HHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCcchhccCCCCcHHHHHHH----HHHHHHH
Confidence 9999999999999999 88999999999999999999999999999 8999999999999999999763 4568999
Q ss_pred HHHHcCcccccc
Q 008358 333 CLARCGAVRANE 344 (568)
Q Consensus 333 ~L~~~ga~~~~~ 344 (568)
.|.++|+..+..
T Consensus 156 ~L~~~g~~~~~~ 167 (179)
T 3f6q_A 156 RAEKMGQNLNRI 167 (179)
T ss_dssp HHHHTTCCCSCB
T ss_pred HHHHhhcCcccC
Confidence 999999987644
No 73
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=8.1e-27 Score=209.69 Aligned_cols=153 Identities=27% Similarity=0.341 Sum_probs=122.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcC
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 220 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g 220 (568)
|.||||.|+..|+.++++.|++..+...+..|..|.||||+ +..|+.+++++|+++ +.+++..|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence 45788888888888888888887322236677788888888 888888888888877 5567777888888888888888
Q ss_pred CHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 221 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 221 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
+.+++++|++.|+++ +..|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 888888888888776 66778888888888888888888888887 66 77788888888888888888888888876
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=3.4e-28 Score=235.35 Aligned_cols=180 Identities=19% Similarity=0.197 Sum_probs=131.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 217 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~ 217 (568)
+..|+||||.|+..|+.++++.|+++|+++. .+..|.||||.|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHH
Confidence 3469999999999999999999999999984 347889999999999999999999988 5578999999999999999
Q ss_pred HcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCC-hHHHHH--HHcCcHHHHH
Q 008358 218 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN-TALHVA--TRKKRTEIVT 294 (568)
Q Consensus 218 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~-TpLh~A--~~~g~~~iv~ 294 (568)
..|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.++++
T Consensus 79 ~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHH
Confidence 999999999999999997 78899999999999999999999999999999 777887776 999999 7889999999
Q ss_pred HHhcCCCCCcccc---------cCCCCCHHHHHhhCCC
Q 008358 295 ELLSLPDTNVNAL---------TRDHKTALDIAEGLPS 323 (568)
Q Consensus 295 ~Ll~~~g~~~~~~---------d~~G~T~L~~A~~~~~ 323 (568)
+|++ .|++++.. |..+.++++++...+.
T Consensus 157 ~Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 157 FLYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHH-hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999 78888776 5667888887776543
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.4e-28 Score=237.99 Aligned_cols=209 Identities=15% Similarity=0.117 Sum_probs=149.1
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
..|.||||.|++.|+.+.++.||+.+ .+++. +..|.||||.|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g----------------------------------~~~~~-~~~~~t~L~~A~~~ 47 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG----------------------------------MRVKF-NPLPLALLLDSSLE 47 (239)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC----------------------------------CCccc-CchhhHHHHHHHHc
Confidence 46889999999999999999999532 22332 35688999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 231 (568)
|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|+||||+|+..|+.+++++|+++
T Consensus 48 g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 125 (239)
T 1ycs_B 48 GEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125 (239)
T ss_dssp TCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999987 67899999999999999999999999998 677899999999999999999999999999999
Q ss_pred CCccccccCCCCC-CHHHHH--HhCCCHHHHHHHHHcCCccccCC---------CCCCChHHHHHHHcCcHHHHHHHhcC
Q 008358 232 DPQLARRTDKKGQ-TALHMA--VKGQSCEVVKLLLEADAAIVMLP---------DKFGNTALHVATRKKRTEIVTELLSL 299 (568)
Q Consensus 232 ~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll~~g~~~~~~~---------d~~G~TpLh~A~~~g~~~iv~~Ll~~ 299 (568)
|+++ +..|..|. ||||+| +..|+.+++++|+++|++ .+.. |..|.++++++...|. +++.|.+
T Consensus 126 ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~- 200 (239)
T 1ycs_B 126 GAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR- 200 (239)
T ss_dssp TCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-
T ss_pred CCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-
Confidence 9998 56666665 999999 788999999999999887 4433 7789999999988876 3444433
Q ss_pred CCCC------cccccCCCCCHHHHHhhCC
Q 008358 300 PDTN------VNALTRDHKTALDIAEGLP 322 (568)
Q Consensus 300 ~g~~------~~~~d~~G~T~L~~A~~~~ 322 (568)
.+.+ ....+..|.+|.++....+
T Consensus 201 ~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~ 229 (239)
T 1ycs_B 201 EDEDEIEWWWARLNDKEGYVPRNLLGLYP 229 (239)
T ss_dssp CTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred cCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence 3433 2345677888888876553
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=2.7e-26 Score=206.23 Aligned_cols=153 Identities=24% Similarity=0.315 Sum_probs=142.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCC
Q 008358 175 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 254 (568)
Q Consensus 175 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 254 (568)
+.||||.|+..|+.++++.|++..+.+++..|..|.||||+ +..|+.+++++|++.|+++ +..|..|+||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcC
Confidence 46899999999999999999999656888899999999999 9999999999999999987 788999999999999999
Q ss_pred CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHH
Q 008358 255 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL 334 (568)
Q Consensus 255 ~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L 334 (568)
+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ . ++++.+|.+|+||||+|+..++. +++++|
T Consensus 80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L 152 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAA-E-SDLHRRDARGLTPLELALQRGAQ----DLVDIL 152 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-T-SCTTCCCTTSCCHHHHHHHSCCH----HHHHHH
T ss_pred cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHh-c-cCCCCcCCCCCCHHHHHHHcCcH----HHHHHH
Confidence 99999999999999 88999999999999999999999999999 5 99999999999999999998765 566666
Q ss_pred HH
Q 008358 335 AR 336 (568)
Q Consensus 335 ~~ 336 (568)
++
T Consensus 153 l~ 154 (156)
T 1bd8_A 153 QG 154 (156)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4.2e-26 Score=204.49 Aligned_cols=150 Identities=27% Similarity=0.391 Sum_probs=136.6
Q ss_pred ChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH
Q 008358 75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 154 (568)
Q Consensus 75 ~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~ 154 (568)
.|+||.|++.|+.+++++|++.+. +++ .|..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~----------------------------------~~~-~~~~g~t~L~~A~~~~~~ 47 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA----------------------------------PFT-TDWLGTSPLHLAAQYGHF 47 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC----------------------------------CCC-CCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC----------------------------------CCC-cCCCCCCHHHHHHHcCCH
Confidence 489999999999999999996321 122 477899999999999999
Q ss_pred HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCc
Q 008358 155 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 234 (568)
Q Consensus 155 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~ 234 (568)
+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 48 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 125 (153)
T 1awc_B 48 STTEVLLRAGVSR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125 (153)
T ss_dssp HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999999998 67889999999999999999999999988 677889999999999999999999999999999998
Q ss_pred cccccCCCCCCHHHHHHhCCCHHHHHHH
Q 008358 235 LARRTDKKGQTALHMAVKGQSCEVVKLL 262 (568)
Q Consensus 235 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 262 (568)
+ +..|..|+||||+|+..|+.+++++|
T Consensus 126 ~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 126 V-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp T-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred c-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 7 77899999999999999999999987
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.4e-29 Score=243.42 Aligned_cols=188 Identities=20% Similarity=0.199 Sum_probs=163.8
Q ss_pred cCCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHH
Q 008358 70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAA 149 (568)
Q Consensus 70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa 149 (568)
.+.+|.||||.|+..|+.++++.|++. +.+++.+|..|+||||+|+
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~----------------------------------g~~~~~~d~~g~tpLh~A~ 62 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKE----------------------------------MNDPSQPNEEGITALHNAI 62 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHH----------------------------------SSCTTCCCTTSCCHHHHHH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhc----------------------------------CCCCCCCCCCCCCHHHHHH
Confidence 355677899999999999999999852 3456778999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH--HHcCCHHHHH
Q 008358 150 VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVK 226 (568)
Q Consensus 150 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~ 226 (568)
..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..+ .+|.||||+| +..|+.++++
T Consensus 63 ~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~ 140 (229)
T 2vge_A 63 CGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCAT 140 (229)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence 999999999999999998 67889999999999999999999999998 55667665 6999999999 9999999999
Q ss_pred HHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCcc-ccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 008358 227 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI-VMLPDKFGNTALHVATRKKRTEIVTELL 297 (568)
Q Consensus 227 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~G~TpLh~A~~~g~~~iv~~Ll 297 (568)
+|++.|+++ +..|..|.||+|.++..+. .++|++.|+++ ++.+|.+|+||||+|+..|+.++|+.++
T Consensus 141 ~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 141 YLADVEQSM-GLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp HHHHHHHHT-TTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred HHHHcCCCc-ccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 999999987 7778899999997665543 36778888874 5778999999999999999999987644
No 79
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=1.1e-28 Score=253.68 Aligned_cols=154 Identities=20% Similarity=0.187 Sum_probs=86.0
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhcCCcc----ccccCCCCchHHHHHhhhhHHHHHHhhhcCc---ccccccCCCCCc
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQ----MVGNLSGAEFDTEVAEIRSSVVNELLKYSTK---EGLTRKNRSGFD 143 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~----~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~---~~~~~~~~~g~T 143 (568)
+.++.||||.||+.|+.++|++|++.+.+. ..+..+.+|++.|+..|+.++|++|++.+.+ .+++.++ +|
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~---~T 165 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN---YH 165 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH---HH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC---CC
Confidence 445557777777777777777777543211 1112233466666666666666666654422 1222222 56
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCcc-cCCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCC
Q 008358 144 PLHIAAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAA-TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 221 (568)
Q Consensus 144 pLh~Aa~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~ 221 (568)
|||+|+..|+.++|++|+++|+++.. ..|..|.||||+|+ ..|+.+++++|++.+ . .|.||||.|+..|+
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g-a-------~~~taL~~Aa~~g~ 237 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP-V-------MLAYAEIHEFEYGE 237 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH-H-------HHHHHHHCTTTTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC-C-------ccchHHHHHHHCCC
Confidence 66666666666666666666665421 14455666666666 666666666666532 1 25566666666666
Q ss_pred HHHHHHHHcCCCcc
Q 008358 222 VDVVKALLSKDPQL 235 (568)
Q Consensus 222 ~~iv~~Ll~~~~~~ 235 (568)
.+++++|++.+++.
T Consensus 238 ~evv~lL~~~ga~~ 251 (376)
T 2aja_A 238 KYVNPFIARHVNRL 251 (376)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc
Confidence 66666666665543
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.8e-25 Score=199.90 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=96.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCC-HHHH
Q 008358 171 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHM 249 (568)
Q Consensus 171 ~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~ 249 (568)
.+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+ .|+.+++++|+++++++ +..|..|+| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 345566666666666666666666665 4455666667777777764 67777777777777766 667778888 8888
Q ss_pred HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319 (568)
Q Consensus 250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~ 319 (568)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+.
T Consensus 85 A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC------------------
T ss_pred HHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccCC
Confidence 8888888888888888888 78888889999999999999999999988 79999999999988877543
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=4.2e-27 Score=241.88 Aligned_cols=242 Identities=18% Similarity=0.096 Sum_probs=168.7
Q ss_pred hHhHHHHH-cCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcc-cccccCCCCCcHHHHHHHcCC
Q 008358 76 TELHLAAQ-RGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKE-GLTRKNRSGFDPLHIAAVQGH 153 (568)
Q Consensus 76 t~Lh~Aa~-~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~-~~~~~~~~g~TpLh~Aa~~g~ 153 (568)
++++.|.. .++.+.++++++.... ..++++.|+..|+.++++.|++.+.+. ..+..|..|.||||+|+..|+
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g~~------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~ 140 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKGIK------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHTCC------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHcCCC------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence 57777776 5788888888863222 237899999999999999998765432 122345567889999999999
Q ss_pred HHHHHHHHhcCCCCc--ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--cCcCCChHHHHHH-HcCCHHHHHHH
Q 008358 154 HAIVQVLLDHDPSLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI--SRSNGKNALHFAA-RQGHVDVVKAL 228 (568)
Q Consensus 154 ~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~L 228 (568)
.++|++|+++|++.. ...+.+ .||||+|+..|+.+++++|+++ +.+++. .|..|.||||+|+ ..|+.+++++|
T Consensus 141 ~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L 218 (376)
T 2aja_A 141 LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFL 218 (376)
T ss_dssp HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 999999999987521 112222 7999999999999999999988 445555 7778899999999 99999999999
Q ss_pred HcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc---------------------
Q 008358 229 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK--------------------- 287 (568)
Q Consensus 229 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~--------------------- 287 (568)
++.+. .|.||||.|+..|+.+++++|+++|++ ++..|. +++.|+..
T Consensus 219 l~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~~~~~l 285 (376)
T 2aja_A 219 LDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMHD----AFKLSNPDGVFDLVTKSECLQGFYMLRNL 285 (376)
T ss_dssp TTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHHT----TTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred HhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcc-cccccH----HHHHHHHCCChhhhcHHhhhhhHHHHHHH
Confidence 98653 278899999999999999999988876 222211 22222222
Q ss_pred ------CcHHHHHHHhcCCCCC----cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 008358 288 ------KRTEIVTELLSLPDTN----VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA 342 (568)
Q Consensus 288 ------g~~~iv~~Ll~~~g~~----~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~~ 342 (568)
+..+.+++|++..++. .....+.+.||||+|+..++. +++++|++.|.++.
T Consensus 286 i~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~----e~v~lLl~~~~v~~ 346 (376)
T 2aja_A 286 IRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ----GACALLLSIPSVLA 346 (376)
T ss_dssp HHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT----THHHHHTTSHHHHH
T ss_pred HHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH----HHHHHHHcChHHHH
Confidence 2345666666532221 112234567889999887654 67788887776554
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=8.4e-25 Score=191.95 Aligned_cols=134 Identities=21% Similarity=0.247 Sum_probs=108.0
Q ss_pred cccccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcC-C
Q 008358 131 KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-G 209 (568)
Q Consensus 131 ~~~~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g 209 (568)
+.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+. |+.+++++|+++ +.+++..|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCC
Confidence 3467788888889999999888899999888888887 5677888888888888 888888888887 5567777777 7
Q ss_pred ChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 210 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 210 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 88888888888888888888887776 66677788888888888888888888877764
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=6.8e-25 Score=197.37 Aligned_cols=145 Identities=20% Similarity=0.193 Sum_probs=118.1
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCCh-HH
Q 008358 135 TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-AL 213 (568)
Q Consensus 135 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pL 213 (568)
...+..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+ .|+.+++++|+++ +.+++..|..|.| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHH
Confidence 445778999999999999999999999999998 678899999999985 9999999999998 6778999999999 99
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 008358 214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 284 (568)
Q Consensus 214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A 284 (568)
|+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||.+-+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccccC
Confidence 9999999999999999999998 78899999999999999999999999999999 889999999998754
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=7.7e-25 Score=203.00 Aligned_cols=145 Identities=18% Similarity=0.117 Sum_probs=90.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHHHHcCCH----HHHHHHHcCCCccccccCCCCCCHHHHH
Q 008358 176 ATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMA 250 (568)
Q Consensus 176 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 250 (568)
.++|+.|+..|+.+.++.++..+. +..+ ..|+||||+|+..|+. +++++|+++|+++ +.+|.+|+||||+|
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a 82 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL 82 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence 355566666666665555555421 2222 4566666666666553 3566666666665 55566666666666
Q ss_pred HhCCC------HHHHHHHHHcCCccccCCCCCCC-hHHHHHHHcC-----cHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 008358 251 VKGQS------CEVVKLLLEADAAIVMLPDKFGN-TALHVATRKK-----RTEIVTELLSLPDTNVNALTRDHKTALDIA 318 (568)
Q Consensus 251 ~~~~~------~~~v~~Ll~~g~~~~~~~d~~G~-TpLh~A~~~g-----~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A 318 (568)
+..++ .+++++|+++|++ ++.+|..|+ ||||+|+..+ +.+++++|++..|++++.+|..|+||||+|
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 65554 4667777777777 667777777 7777777633 345677777655777777777777777777
Q ss_pred hhCCCch
Q 008358 319 EGLPSSE 325 (568)
Q Consensus 319 ~~~~~~~ 325 (568)
++.+...
T Consensus 162 ~~~~~~~ 168 (186)
T 3t8k_A 162 KRCQKPI 168 (186)
T ss_dssp HTTTCHH
T ss_pred HHcCCHH
Confidence 7666543
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=1.8e-25 Score=207.33 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=131.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358 141 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT----AVVNELLSKDGGLLEISRSNGKNALHFA 216 (568)
Q Consensus 141 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 216 (568)
+.++|+.|++.|+.+.++.+++.+.+. ..+..|+||||+|+..|+. +++++|+++ +++++.+|.+|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Confidence 457889999999999988888877553 2236688999999988875 488888887 677888888999999999
Q ss_pred HHcCC------HHHHHHHHcCCCccccccCCCCC-CHHHHHHhCC-----CHHHHHHHHH-cCCccccCCCCCCChHHHH
Q 008358 217 ARQGH------VDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQ-----SCEVVKLLLE-ADAAIVMLPDKFGNTALHV 283 (568)
Q Consensus 217 ~~~g~------~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~-----~~~~v~~Ll~-~g~~~~~~~d~~G~TpLh~ 283 (568)
+..|+ .+++++|+++|+++ +.+|..|+ ||||+|+..+ ..+++++|++ +|++ ++.+|..|+||||+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALEF 160 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC-TTCCCTTSCCHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC-CcccCCCCCCHHHH
Confidence 88876 57899999999888 77888999 9999998844 3568999999 8998 88999999999999
Q ss_pred HHHcCcHHHHHHHhcCCCCCcccc
Q 008358 284 ATRKKRTEIVTELLSLPDTNVNAL 307 (568)
Q Consensus 284 A~~~g~~~iv~~Ll~~~g~~~~~~ 307 (568)
|++.|+.+++++|++ ...+.+.+
T Consensus 161 A~~~~~~~~v~~L~~-~~~~~~~~ 183 (186)
T 3t8k_A 161 VKRCQKPIALKMMED-YIKKYNLK 183 (186)
T ss_dssp HHTTTCHHHHHHHHH-HHHHHTCC
T ss_pred HHHcCCHHHHHHHHH-HHHHHhcc
Confidence 999999999998887 33344433
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=2.1e-24 Score=189.39 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=76.7
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCC-CCCHH
Q 008358 169 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-GQTAL 247 (568)
Q Consensus 169 ~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-g~t~L 247 (568)
+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+. |+.+++++|+++++++ +..|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 34555566666666666666666666655 34455555666666666666 6666666666665554 445555 56666
Q ss_pred HHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 008358 248 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 302 (568)
Q Consensus 248 h~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~ 302 (568)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~Ga 135 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA-ATG 135 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH-HHC
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH-cCC
Confidence 666666666666666666655 55556666666666666666666666655 444
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1e-22 Score=175.28 Aligned_cols=126 Identities=43% Similarity=0.652 Sum_probs=88.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 219 (568)
+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence 4677888888888888888877777776 45666777777777777777777777766 445566666677777777777
Q ss_pred CCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 220 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 220 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 7777777777766665 55566667777777777777777777666653
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.4e-23 Score=179.47 Aligned_cols=125 Identities=25% Similarity=0.381 Sum_probs=79.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358 139 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218 (568)
Q Consensus 139 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 218 (568)
..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+.
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~ 89 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAF 89 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHH
Confidence 34566777777777777777777776665 45566666666666666666666666665 44555556666666666666
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcC
Q 008358 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 266 (568)
Q Consensus 219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g 266 (568)
.|+.+++++|+++++++ +..|.+|+||||+|+..|+.+++++|++.|
T Consensus 90 ~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 90 IGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 66666666666666554 455556666666666666666666665543
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.4e-22 Score=174.36 Aligned_cols=126 Identities=44% Similarity=0.619 Sum_probs=99.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhC
Q 008358 174 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 253 (568)
Q Consensus 174 ~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 253 (568)
+|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 467888888888888888888877 4556777778888888888888888888888887776 66677888888888888
Q ss_pred CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 008358 254 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 303 (568)
Q Consensus 254 ~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~ 303 (568)
++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|+|
T Consensus 79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCC
T ss_pred ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHH-cCCC
Confidence 888888888888877 67778888888888888888888888877 5654
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=7.8e-23 Score=179.34 Aligned_cols=124 Identities=27% Similarity=0.415 Sum_probs=89.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHH
Q 008358 172 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 251 (568)
Q Consensus 172 ~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 251 (568)
...+.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 34566777777777777777777776 4556666777777777777777777777777777665 556677777777777
Q ss_pred hCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 008358 252 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 298 (568)
Q Consensus 252 ~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 298 (568)
..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 89 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 77777777777777777 66677777777777777777777777766
No 91
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=197.68 Aligned_cols=141 Identities=24% Similarity=0.249 Sum_probs=103.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCCh
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKN 211 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 211 (568)
.+.++|+.|+..|+.+.++.|++.|++++.. .+..|.||||+|+.. |+.+++++|+++ +.+++..|.+|.|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCC
Confidence 3456799999999999999999888887432 577788888888876 778888888877 5567777777888
Q ss_pred HHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCc
Q 008358 212 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 289 (568)
Q Consensus 212 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~ 289 (568)
|||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+..|+.+++++|+++|++ .|.||||+|+..|+
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 888888888888888888877776 66777788888888887888888888777765 46778887777665
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.7e-22 Score=177.29 Aligned_cols=114 Identities=28% Similarity=0.346 Sum_probs=89.9
Q ss_pred ccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 008358 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283 (568)
Q Consensus 204 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~ 283 (568)
.+|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 45677778888888777888888888777776 56677788888888888888888888888777 67778888888888
Q ss_pred HHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 008358 284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 320 (568)
Q Consensus 284 A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~ 320 (568)
|+..|+.+++++|++ .|++++.+|..|+||+|+|..
T Consensus 83 A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~ 118 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTDD 118 (137)
T ss_dssp HHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCCC
T ss_pred HHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhh
Confidence 888888888888887 688888888888888888764
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.3e-22 Score=177.98 Aligned_cols=121 Identities=29% Similarity=0.377 Sum_probs=59.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216 (568)
Q Consensus 137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 216 (568)
+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHH
Confidence 4555556666666666666666666555554 34445555555555555555555555544 333444444444444444
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHH
Q 008358 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 260 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 260 (568)
+..|+.+++++|++.++++ +..|..|+||||+|+..+..++++
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHh
Confidence 4444444444444444443 333444444444444433333333
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.2e-22 Score=195.09 Aligned_cols=139 Identities=23% Similarity=0.254 Sum_probs=123.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA 216 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A 216 (568)
+..|+||||+|+..|+.++++.|++ |+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..+ ..|.||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHH
Confidence 4568899999999999999999999 8887 67889999999999999999999999998 56677777 7899999999
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
+..|+.+++++|+++|+++ +..|..|+||||+|+..+ .+..+.||||+|+..|+.+++++|
T Consensus 119 ~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcChHHHHHHH
Confidence 9999999999999999987 778999999999998521 225688999999999999999999
Q ss_pred hc
Q 008358 297 LS 298 (568)
Q Consensus 297 l~ 298 (568)
++
T Consensus 180 ~~ 181 (244)
T 3ui2_A 180 EG 181 (244)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=2.6e-22 Score=185.51 Aligned_cols=139 Identities=23% Similarity=0.255 Sum_probs=124.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccC-cCCChHHHHH
Q 008358 138 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA 216 (568)
Q Consensus 138 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A 216 (568)
+..|+||||+|+..|+.++++.|++ |.++ +..|..|.||||+|+..|+.+++++|+++ +.+++..| .+|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHH
Confidence 5678999999999999999999999 8887 67889999999999999999999999998 56677777 8899999999
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 008358 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 296 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~L 296 (568)
+..|+.+++++|+++|+++ +..|.+|+||||+|++.++ ...+.|+|++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHHH
Confidence 9999999999999999987 7889999999999986321 13568999999999999999998
Q ss_pred hc
Q 008358 297 LS 298 (568)
Q Consensus 297 l~ 298 (568)
.+
T Consensus 179 ~~ 180 (183)
T 3deo_A 179 EG 180 (183)
T ss_dssp HT
T ss_pred HH
Confidence 76
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=5.9e-22 Score=183.12 Aligned_cols=141 Identities=21% Similarity=0.210 Sum_probs=123.8
Q ss_pred CCCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHH
Q 008358 71 GRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 150 (568)
Q Consensus 71 ~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~ 150 (568)
+..|.||||.|++.|+.++++.|++ +.+++.+|..|+||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------------~~~~~~~d~~g~t~L~~A~~ 85 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-----------------------------------DRDVDAVDENGRTALLFVAG 85 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-----------------------------------TSCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-----------------------------------cCCCCCcCCCCCCHHHHHHH
Confidence 3456799999999999999999985 23467778999999999999
Q ss_pred cCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358 151 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230 (568)
Q Consensus 151 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 230 (568)
.|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..++
T Consensus 86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~--------- 155 (183)
T 3deo_A 86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK--------- 155 (183)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH---------
T ss_pred cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc---------
Confidence 99999999999999998544448999999999999999999999998 67788999999999999997432
Q ss_pred CCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHc
Q 008358 231 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 265 (568)
Q Consensus 231 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 265 (568)
...+.++|++|+..|..+++++|.++
T Consensus 156 ---------~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 156 ---------TTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ---------TCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------CcccccHHHHHHHcCHHHHHHHHHHh
Confidence 24578999999999999999999864
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.86 E-value=7.3e-22 Score=191.39 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=126.1
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHc
Q 008358 72 RHNDTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 151 (568)
Q Consensus 72 ~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~ 151 (568)
..|.||||.||+.|+.++++.|++ +.+++.+|..|+||||+|+..
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-----------------------------------~~~~~~~d~~g~t~L~~A~~~ 87 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-----------------------------------DRDVDAVDENGRTALLFVAGL 87 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-----------------------------------TCCTTCBCTTSCBHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-----------------------------------CCCCCCcCCCCCCHHHHHHHC
Confidence 356799999999999999999985 334677889999999999999
Q ss_pred CCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC
Q 008358 152 GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 231 (568)
Q Consensus 152 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 231 (568)
|+.++|++|+++|++++...+..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..++
T Consensus 88 g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~---------- 156 (244)
T 3ui2_A 88 GSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK---------- 156 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHHT----------
T ss_pred CCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHHHh----------
Confidence 9999999999999999544448899999999999999999999998 67788999999999999986322
Q ss_pred CCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 232 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 232 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
+..+.||||+|+..|+.+++++|++++.+
T Consensus 157 --------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 157 --------TTPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp --------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred --------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 35689999999999999999999997554
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.8e-22 Score=191.27 Aligned_cols=130 Identities=27% Similarity=0.325 Sum_probs=78.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216 (568)
Q Consensus 137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 216 (568)
.+..|+||||+|+..|+.++++.|++.|+++ +..|..|.||||+|+..|+.+++++|++..+.+++..|..|.||||+|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 4566778888888888888888888877776 456666777777777777777777776664555555555555555555
Q ss_pred HHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 217 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
+..|+.+++++|+++|+++ +..|.+|+||||+|+..++.++++.|++.++.
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred HHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 5555555555555555554 44455555555555555555555555555444
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=2.4e-21 Score=166.57 Aligned_cols=111 Identities=27% Similarity=0.330 Sum_probs=95.5
Q ss_pred CcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358 206 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 285 (568)
Q Consensus 206 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~ 285 (568)
+..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 456788899999999999999888888876 67788899999999999999999999998888 7888889999999999
Q ss_pred HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 008358 286 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 319 (568)
Q Consensus 286 ~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~ 319 (568)
..|+.+++++|++ .|++++.+|.+|+||||+|.
T Consensus 82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence 9999999999998 78999999999999999884
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=5.8e-22 Score=189.01 Aligned_cols=137 Identities=26% Similarity=0.316 Sum_probs=106.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcC-CCccccccCCCCCCHHHH
Q 008358 171 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHM 249 (568)
Q Consensus 171 ~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~ 249 (568)
.+..|.||||+|+..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 356678999999999999999999987 566788888999999999999999999999988 7766 7788899999999
Q ss_pred HHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 008358 250 AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 311 (568)
Q Consensus 250 A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G 311 (568)
|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus 147 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~ 206 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED 206 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence 9999999999999999888 78889999999999999999999988888 788777666554
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.9e-21 Score=167.20 Aligned_cols=110 Identities=26% Similarity=0.336 Sum_probs=66.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHh
Q 008358 173 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 252 (568)
Q Consensus 173 ~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 252 (568)
..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 3445555555555555555555555 3344555555666666666666666666666666554 5556666666666666
Q ss_pred CCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 008358 253 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 285 (568)
Q Consensus 253 ~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~ 285 (568)
.|+.+++++|+++|++ ++.+|.+|+||||+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhC
Confidence 6666666666666666 5666666666666663
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=2.7e-21 Score=193.26 Aligned_cols=139 Identities=22% Similarity=0.250 Sum_probs=118.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccc------cCcCCChHHHHHHHc---CCHHHHHHHHcCCCccccccCCCCCC
Q 008358 175 NATPLVSAATRGHTAVVNELLSKDGGLLEI------SRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQT 245 (568)
Q Consensus 175 g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t 245 (568)
+.++|+.|+..|+.+.++.|++. +.+++. .+..|.||||+|+.. |+.+++++|+++|+++ +..|.+|+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 45789999999999999999987 445555 588999999999987 8999999999999987 778999999
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 008358 246 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS 323 (568)
Q Consensus 246 ~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~ 323 (568)
|||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++ .|.||||+|+..+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCC
Confidence 99999999999999999999999 88999999999999999999999999998 5654 68999999987654
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.6e-20 Score=185.41 Aligned_cols=195 Identities=18% Similarity=0.190 Sum_probs=146.4
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHH
Q 008358 137 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 216 (568)
Q Consensus 137 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 216 (568)
.|..+.+.|+.+...|+..+.+++...-+.........+.... .....-..+++...........+....++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4667888999999999988777765543332111111111111 111111222333222222222233456899999
Q ss_pred HHcCCHHHHHHHHcCCCccc-----cccCCCCCCHHHHHHhC---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 008358 217 ARQGHVDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 288 (568)
Q Consensus 217 ~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~A~~~---~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g 288 (568)
+..|+.+.++.+++.++++. +..|..|+||||+|+.. |+.+++++|+++|++ ++.+|..|+||||+|+..|
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~g 216 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTD 216 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHTT
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHcC
Confidence 99999999999999998853 34488999999999998 899999999999999 8899999999999999999
Q ss_pred cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 008358 289 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR 341 (568)
Q Consensus 289 ~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~~ 341 (568)
+.+++++|++ .|++++.+|.+|+||||+|+..++. +++++|+++|+.+
T Consensus 217 ~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 217 NAECLKLLLR-GKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSGR 264 (278)
T ss_dssp CHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTTC
T ss_pred CHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCCC
Confidence 9999999999 8999999999999999999987754 7888899988864
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=7.1e-20 Score=180.81 Aligned_cols=191 Identities=17% Similarity=0.190 Sum_probs=119.8
Q ss_pred cCCCCChHhHHHHHcCCHHHHHHHHhcCCcccccc-CCCCchHHHHHhhhhHHHH--HHhhhcCcccccccCCCCCcHHH
Q 008358 70 TGRHNDTELHLAAQRGDLGAVKQILYGIDSQMVGN-LSGAEFDTEVAEIRSSVVN--ELLKYSTKEGLTRKNRSGFDPLH 146 (568)
Q Consensus 70 ~~~~g~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~-~~~~~l~~a~~~~~~~~v~--~Ll~~~~~~~~~~~~~~g~TpLh 146 (568)
.|..+.+.|+.+...|+....+.+....+...... ...... ..+.+.+. ++.. ..............++|+
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~-----~~~~~fI~aKYl~~-~f~~~~~~~~~~~l~~l~ 135 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM-----IARKDYITAKYMER-RYARKKHADTAAKLHSLC 135 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH-----HHHHHHHHHHHTTC-TTSCCCSSSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH-----HHHHHHHHHHHHHh-hcccccccccchhhhhhh
Confidence 56788899999999999888777654332221100 011111 11112221 2211 111112222223346888
Q ss_pred HHHHcCCHHHHHHHHhcCCCCcc-----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccCcCCChHHHHHHH
Q 008358 147 IAAVQGHHAIVQVLLDHDPSLSQ-----TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 218 (568)
Q Consensus 147 ~Aa~~g~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~ 218 (568)
.|+..|+.+.++.+++.|+++.. ..|..|.||||+|+.. |+.+++++|+++ +.+++..|.+|.||||+|+.
T Consensus 136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~ 214 (278)
T 1dcq_A 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCL 214 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHH
T ss_pred hHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHH
Confidence 88888998888888888887532 2356677777777777 677777777776 45566667777777777777
Q ss_pred cCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 219 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 219 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
.|+.+++++|+++|+++ +..|.+|+||||+|+..|+.+++++|+++|++
T Consensus 215 ~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 215 TDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777765 56677777777777777777777777776654
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.1e-19 Score=186.05 Aligned_cols=145 Identities=19% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccccC--cCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHH
Q 008358 174 SNATPLVSAATR-GHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 250 (568)
Q Consensus 174 ~g~tpL~~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A 250 (568)
.+.|+||.|+.. |+.++++.|+++ +.+++..+ ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A 275 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA 275 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 445677777766 677777777665 44555555 56777777777777777777777776666 56667777777777
Q ss_pred HhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcC--CCCCcccccCCCCCHHHHHhhC
Q 008358 251 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--PDTNVNALTRDHKTALDIAEGL 321 (568)
Q Consensus 251 ~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~--~g~~~~~~d~~G~T~L~~A~~~ 321 (568)
+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+.. .+.+....+..+.|+++++...
T Consensus 276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 777777777777777776 666777777777777777777777777641 2233444556667777766554
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.7e-19 Score=193.18 Aligned_cols=125 Identities=25% Similarity=0.307 Sum_probs=78.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCccc-----CCCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358 142 FDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAAT---RGHTAVVNELLSKDGGLLEISRSNGKNAL 213 (568)
Q Consensus 142 ~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 213 (568)
.+.||.|+..|+.++|+.|++.|++++.. .|..|.||||+|+. .|+.+++++|+++ +++++..|.+|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcHH
Confidence 36788888888888888888888776322 15556666666644 5666666666665 345555666666666
Q ss_pred HHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCc
Q 008358 214 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 268 (568)
Q Consensus 214 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~ 268 (568)
|+|+..|+.+++++|+++|+++ +..|.+|+||||+|+..|+.+++++|+++|++
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 6666666666666666666655 45556666666666666666666666666655
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.7e-19 Score=184.62 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=94.4
Q ss_pred cCcCCChHHHHHHHc-CCHHHHHHHHcCCCccccccC--CCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358 205 SRSNGKNALHFAARQ-GHVDVVKALLSKDPQLARRTD--KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281 (568)
Q Consensus 205 ~d~~g~tpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpL 281 (568)
.+..+.|+||.|+.. |+.++++.|++.|+++ +..| ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 344566778888877 7888888888777776 4455 6777888888888888888888887777 677777788888
Q ss_pred HHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 008358 282 HVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV 340 (568)
Q Consensus 282 h~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A~~~~~~~~~~~i~~~L~~~ga~ 340 (568)
|+|+..|+.+++++|++ .|++++.+|.+|+||||+|+..++. +++++|+.++..
T Consensus 273 h~A~~~g~~~~v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~----~iv~lLl~~~~~ 326 (368)
T 3jue_A 273 HHATILGHTGLACLFLK-RGADLGARDSEGRDPLTIAMETANA----DIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHC-
T ss_pred HHHHHcCcHHHHHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHcCCC
Confidence 88888888888888777 6788888888888888888776653 555666655543
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.4e-19 Score=145.89 Aligned_cols=92 Identities=48% Similarity=0.692 Sum_probs=63.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 008358 208 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 287 (568)
Q Consensus 208 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~ 287 (568)
+|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHc
Confidence 3667777777777777777777776665 56667777777777777777777777777776 666777777777777777
Q ss_pred CcHHHHHHHhcCCCC
Q 008358 288 KRTEIVTELLSLPDT 302 (568)
Q Consensus 288 g~~~iv~~Ll~~~g~ 302 (568)
|+.+++++|++ .|+
T Consensus 79 ~~~~~~~~Ll~-~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLE-AGA 92 (93)
T ss_dssp TCHHHHHHHHH-TTC
T ss_pred CCHHHHHHHHH-cCC
Confidence 77777777776 454
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=8.5e-20 Score=154.78 Aligned_cols=109 Identities=38% Similarity=0.481 Sum_probs=98.0
Q ss_pred ccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 008358 204 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 283 (568)
Q Consensus 204 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~ 283 (568)
.+|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 46788999999999999999999999999887 77889999999999999999999999999998 88899999999999
Q ss_pred HHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 008358 284 ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 315 (568)
Q Consensus 284 A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L 315 (568)
|+..++.+++++|++ .|+++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence 999999999999998 8999999999998874
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=4.5e-19 Score=189.92 Aligned_cols=139 Identities=23% Similarity=0.242 Sum_probs=115.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccc------CcCCChHHHHHHH---cCCHHHHHHHHcCCCccccccCCCCCCH
Q 008358 176 ATPLVSAATRGHTAVVNELLSKDGGLLEIS------RSNGKNALHFAAR---QGHVDVVKALLSKDPQLARRTDKKGQTA 246 (568)
Q Consensus 176 ~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 246 (568)
.+.||.|+..|+.++++.|++.+ .+++.. |..|.||||+|+. .|+.+++++|+++|+++ +..|.+|+||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCcH
Confidence 47899999999999999999984 566655 8899999999976 89999999999999998 7889999999
Q ss_pred HHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 008358 247 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 318 (568)
Q Consensus 247 Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g~~~~~~d~~G~T~L~~A 318 (568)
||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++++..+..+.++...+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~h~~~~~~~~ 280 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAGTFAFPLHVDYSWVIS 280 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHH-TCC----------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hCCCCCCCcceeeccccCC
Confidence 9999999999999999999999 89999999999999999999999999999 8999987544444444333
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.78 E-value=9.7e-19 Score=142.25 Aligned_cols=92 Identities=40% Similarity=0.641 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHHHHHc
Q 008358 140 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 219 (568)
Q Consensus 140 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~ 219 (568)
+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|.+|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHc
Confidence 3677777777777777777777777776 56667777777777777777777777766 455666677777777777777
Q ss_pred CCHHHHHHHHcCCC
Q 008358 220 GHVDVVKALLSKDP 233 (568)
Q Consensus 220 g~~~iv~~Ll~~~~ 233 (568)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 77777777776664
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=1.7e-18 Score=146.66 Aligned_cols=108 Identities=30% Similarity=0.446 Sum_probs=72.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHHHH
Q 008358 136 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 215 (568)
Q Consensus 136 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 215 (568)
.+|.+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT-TCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHH
Confidence 35667777777777777777777777777776 45666777777777777777777777766 44556666666666666
Q ss_pred HHHcCCHHHHHHHHcCCCccccccCCCCCCH
Q 008358 216 AARQGHVDVVKALLSKDPQLARRTDKKGQTA 246 (568)
Q Consensus 216 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~ 246 (568)
|+..|+.+++++|+++|+++ +..+..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 66666666666666666665 4555555554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=1.5e-16 Score=133.67 Aligned_cols=93 Identities=37% Similarity=0.463 Sum_probs=72.3
Q ss_pred ccccCcCCChHHHHHHHcCCHHHHHHHHcCCCccccccCCCCCCHHHHHHhCCCHHHHHHHHHcCCccccCCCCCCChHH
Q 008358 202 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 281 (568)
Q Consensus 202 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~g~~~~~~~d~~G~TpL 281 (568)
....|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 3445677888888888888888888888887776 66678888888888888888888888888887 777888888888
Q ss_pred HHHHHcCcHHHHHHH
Q 008358 282 HVATRKKRTEIVTEL 296 (568)
Q Consensus 282 h~A~~~g~~~iv~~L 296 (568)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 888888888888765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.64 E-value=6.5e-16 Score=129.69 Aligned_cols=93 Identities=26% Similarity=0.322 Sum_probs=76.5
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccCcCCChHH
Q 008358 134 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 213 (568)
Q Consensus 134 ~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 213 (568)
....|.+|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAF 94 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCcHH
Confidence 4556778889999999999999999999998887 56788889999999999999999998888 566788888888999
Q ss_pred HHHHHcCCHHHHHHH
Q 008358 214 HFAARQGHVDVVKAL 228 (568)
Q Consensus 214 h~A~~~g~~~iv~~L 228 (568)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 999888888888876
No 115
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=54.11 E-value=4.4 Score=26.50 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhheee
Q 008358 501 HEWAAILVTVVGGLIMAGVLGTMTYYVV 528 (568)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (568)
....+|..-++|++..+.++....++++
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~ 34 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYV 34 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence 3445677777877666655555444443
No 116
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.43 E-value=3.7 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhheee
Q 008358 502 EWAAILVTVVGGLIMAGVLGTMTYYVV 528 (568)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (568)
...+|...++|++.++.++...++|++
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHh
Confidence 345677777877666666555544443
No 117
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.71 E-value=49 Score=32.25 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-cc--CCcchhhHHHHHHH
Q 008358 475 NKLMWLASVCTSVAFIASSYIV-VG--RRHEWAAILVTVVG 512 (568)
Q Consensus 475 ~~~~~~~~~~~~~af~~~~~~~-~~--~~~~~~~~~~~~~~ 512 (568)
..|-.++.+.+..+|++|+|=+ +. |...|...+..+++
T Consensus 280 k~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~ 320 (339)
T 4ev6_A 280 KILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMA 320 (339)
T ss_dssp HHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHH
Confidence 3466677778889999999932 22 34455433333333
No 118
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=27.00 E-value=47 Score=24.72 Aligned_cols=24 Identities=17% Similarity=0.592 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhh
Q 008358 502 EWAAILVTVVGGLIMAGVLGTMTY 525 (568)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~ 525 (568)
...+++..++++++++++++.++|
T Consensus 9 n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666776666666555444
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=26.90 E-value=42 Score=20.99 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.7
Q ss_pred HhHHHHHcCCHHHHHHHH
Q 008358 77 ELHLAAQRGDLGAVKQIL 94 (568)
Q Consensus 77 ~Lh~Aa~~g~~~~v~~LL 94 (568)
-+..||..||.+.++.|=
T Consensus 16 qiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 478999999999999885
No 120
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=23.50 E-value=3.4e+02 Score=29.20 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----------cchhhHHHHHHHHHHHHHHHHHhh-hee
Q 008358 470 VVEVINKLMWLASVCTSVAFIASSYIVVGRR-----------HEWAAILVTVVGGLIMAGVLGTMT-YYV 527 (568)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~af~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 527 (568)
.....++.+|++.+-+++++....+..++.. ..|..+.+|++.+++...+++.+. ||.
T Consensus 357 ~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~Gl~~g~lI~~iTeYyT 426 (766)
T 4a01_A 357 IEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYYT 426 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455566778777666655555566665531 123344555555555555555554 443
No 121
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.11 E-value=76 Score=31.17 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 008358 473 VINKLMWLASVCTSVAFIASSY 494 (568)
Q Consensus 473 ~~~~~~~~~~~~~~~af~~~~~ 494 (568)
+..+|-.++.+++..+|++|+|
T Consensus 302 imk~LTiit~IflP~T~IaGiy 323 (363)
T 2iub_A 302 VMKVLTIIATIFMPLTFIAGIY 323 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3345667888888999999998
No 122
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.79 E-value=2.5e+02 Score=24.38 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=62.5
Q ss_pred ChHhHHHHHcCCHHHHHHHHhcCCccccccCCCCchHHHHHhhhhHHHHHHhhhcCcccccccCCCCCcHHHHHHHcCCH
Q 008358 75 DTELHLAAQRGDLGAVKQILYGIDSQMVGNLSGAEFDTEVAEIRSSVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 154 (568)
Q Consensus 75 ~t~Lh~Aa~~g~~~~v~~LL~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~~~~g~TpLh~Aa~~g~~ 154 (568)
++-+-+|...|+++....+.+..+. ...+..--..|...++.++++....... |.. ..+.+....|+.
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D~~--~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND---SITWERLIQEALAQGNASLAEMIYQTQH-------SFD--KLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC---HHHHHHHHHHHHHTTCHHHHHHHHHHTT-------CHH--HHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC---HHHHHHHHHHHHHcCChHHHHHHHHHhC-------CHH--HHHHHHHHhCCH
Confidence 3667889999999888777653211 1111222334555666666666654322 111 233444445665
Q ss_pred HHHHHHHhcCCCCcccCCCCCCcHHHHHHHcCCHH-HHHHHHHcCCCCccccCcCCChHHHHHHHcCCHHHHHHHHc
Q 008358 155 AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA-VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 230 (568)
Q Consensus 155 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~Aa~~g~~~-~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 230 (568)
+-++.|.+.- ....+....++.+...|+.+ +++.|.+. +.. --+...|-.+|..++.+.+++
T Consensus 77 e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~-~r~--------~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 77 NKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEG-GSL--------PLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHT-TCH--------HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHC-CCh--------HHHHHHHHHcCcHHHHHHHHH
Confidence 5555543321 11112234555555566544 33333322 111 113334445666666666654
No 123
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=20.11 E-value=46 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhh
Q 008358 501 HEWAAILVTVVGGLIMAGVLGTMTY 525 (568)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (568)
..|-.|++.+++++.++.++...+|
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777776665554444
No 124
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.02 E-value=54 Score=23.35 Aligned_cols=10 Identities=60% Similarity=1.248 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 008358 511 VGGLIMAGVL 520 (568)
Q Consensus 511 ~~~~~~~~~~ 520 (568)
+|++++.+++
T Consensus 19 igGLifA~vL 28 (67)
T 2jp3_A 19 LGGLIFGGLL 28 (67)
T ss_dssp HHHHHHHHHH
T ss_pred ecchhhHHHH
Confidence 3444443333
Done!