BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008362
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
Query: 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT 304
A++ +LRK R G E + G+S + GE FG++GPNGAGKTT + ++ + + +
Sbjct: 15 AVVVKDLRK----RIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 305 SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE 364
SG V G ++ + + + P+E + + G E+L F + + VE
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 365 ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
+ + L G + YS GM R+L +A +L+ NP++ +DEP++GLD + +
Sbjct: 129 RATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 425 NVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
++K+A Q G I++++H+M E E LCDR+ + +G++ G +ELK RY +
Sbjct: 187 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 242
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 109/207 (52%), Gaps = 8/207 (3%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
+++ LSL + SGE F +LGP GAGKT F+ ++ G SG + G D+ TD+
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV-TDLSPEKHD 73
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+ Q L+ + +++L F R+K +K P LK +L D+
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----DRNPLTL 128
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV--VKRAKQGRAIILTTHSM 443
SGG ++R+++A +L+ NPK++ +DEP + LDP ++ N + V K ++ TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKEL 470
EA + DR+ + +DG L +G P+E+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 131/239 (54%), Gaps = 28/239 (11%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
II N+ K++ + G + VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++
Sbjct: 4 IIVKNVSKVF--KKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 306 GTAYVQGLDIRTDMDRIYTSMG--VCPQED----------LLWETLTGREHLLFYGRLKN 353
G Y DR+ S G + P ED L+ LT E++ F
Sbjct: 60 GELYFD--------DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111
Query: 354 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
+ + + VEE K +++ H V + + SGG ++R+++A +L+ +P ++ +DEP +
Sbjct: 112 MSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFS 169
Query: 414 GLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
LD R++ +VK +++ G +++ +H + A+ DR+G+ V G L +G P++L
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 10/231 (4%)
Query: 251 LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310
+ KIYPG +V G+S + GE G+LGP+G+GKTT + ++ G+ R T G ++
Sbjct: 20 VEKIYPG-----GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 311 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV 370
G + TD+ ++G+ Q L++ +T +++ F R K + + V E L+ +
Sbjct: 75 GGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM 133
Query: 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430
L A++ + SGG ++R+++A +L P+V+ DEP +D R L V++
Sbjct: 134 RL--ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQV 191
Query: 431 --KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
+ G + TH EEA + DR+ + +G+++ G P+E+ + G +V
Sbjct: 192 HDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFV 242
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 130/239 (54%), Gaps = 28/239 (11%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
II N+ K++ + G + VA++ +++ + +GE FG+LGP+GAGKTTF+ ++ G+ ++
Sbjct: 4 IIVKNVSKVF--KKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 306 GTAYVQGLDIRTDMDRIYTSMG--VCPQED----------LLWETLTGREHLLFYGRLKN 353
G Y DR+ S G + P ED L+ LT E++ F
Sbjct: 60 GELYFD--------DRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111
Query: 354 LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
+ + + VEE K +++ H V + + SG ++R+++A +L+ +P ++ +DEP +
Sbjct: 112 MSKEEIRKRVEEVAKILDIHH--VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 414 GLDPASRNNLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
LD R++ +VK +++ G +++ +H + A+ DR+G+ V G L +G P++L
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 5/207 (2%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AV+G+S + GE +LGP+G GKTT + M+ GI + TSG Y + + D+ Y
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDV-LVNDIPPKYRE 76
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+G+ Q L+ +T E++ F R + + + + V E + L + D++ +
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK--LLIDNLLDRKPTQL 134
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTTHSM 443
SGG ++R+++A +L+ PKV+ DEP + LD R + +K +Q I + TH
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKEL 470
EA + R+ +F G L G P E+
Sbjct: 195 AEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+N ++L + GE +LGP+G+GK+T + + GI + TSG Y D+ T++ +
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDV-TELPPKDRN 76
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+G+ Q L+ +T +++ F L+ + + V E K +++ DK +Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI------DKLLNRY 130
Query: 386 ----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILT 439
SGG ++R+++A +L+ P+V+ +DEP + LD R + +KR ++ G +
Sbjct: 131 PWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 440 THSMEEAEALCDRLGIFVDGSLQCIGNPKEL--KARY 474
TH EA A+ DR+ + +G + +G P E+ K +Y
Sbjct: 191 THDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKY 227
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 124/248 (50%), Gaps = 23/248 (9%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
+I N+R YP R PE + GLS ++ G+ ++GP+G GK+T ++++ T
Sbjct: 1077 VIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG 1133
Query: 306 GTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA-V 363
G ++ G +I+T + + + + + QE L++ + YG L ++T A V
Sbjct: 1134 GEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN--IIYG----LDPSSVTMAQV 1187
Query: 364 EESLKSVNLFHGGVADKQAG----------KYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
EE+ + N+ H +A+ G + SGG K+R+++A +L+ NPK++ +DE ++
Sbjct: 1188 EEAARLANI-HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246
Query: 414 GLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473
LD S + + RA++GR I+ H + D + + +G++ G +L +
Sbjct: 1247 ALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305
Query: 474 YGGSYVFT 481
G Y T
Sbjct: 1306 KGAYYKLT 1313
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 143/302 (47%), Gaps = 30/302 (9%)
Query: 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305
I +N+ YP R P+ + G++L + +G+ ++G +G GK+T IS+++
Sbjct: 416 ITVENVHFTYPSR---PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472
Query: 306 GTAYVQGLDIR-TDMDRIYTSMGVCPQEDLLW------------ETLTGREHLLFYGRLK 352
G + G+D+R +++ + ++ V QE L+ E +T RE ++ ++
Sbjct: 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGIT-REEMVAACKMA 531
Query: 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS 412
N E+ +K++ + + + + SGG K+R+++A +L+ NPK++ +DE +
Sbjct: 532 N---------AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEAT 582
Query: 413 TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ LD S + + +A +GR I+ H + D + +G + +G+ + L A
Sbjct: 583 SALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-ADLIISCKNGQVVEVGDHRALMA 641
Query: 473 RYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVE 532
+ G Y + T+ + V+S A+ N + + + + L +Q + D+ V
Sbjct: 642 QQGLYY--DLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHE-GLSRQASEMDDIMNRVR 698
Query: 533 EA 534
+
Sbjct: 699 SS 700
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 10/224 (4%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
H I N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R
Sbjct: 23 HMIKLSNITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 304 TSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
T G+ V G ++ T ++ + +G+ Q L + T ++ L N +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ V E L V L G D SGG K+R+++A +L NPKV+ D+ ++ LDPA+
Sbjct: 141 KRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 420 RNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
++ ++K + G I+L TH M+ + +CD + + +G L
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YP R E + GL+L + SG+ ++G +G GK+T + +M + G
Sbjct: 392 NIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 310 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 366
+ G DIRT ++ + +GV QE +L+ T + YGR +++ + +AV+E+
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN--IRYGR-EDVTMDEIEKAVKEANA 505
Query: 367 ----LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+K + F V ++ A + SGG K+R+++A +L+ NPK++ +DE ++ LD S
Sbjct: 506 YDFIMKLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482
+ + +A++GR I+ H + D + F G + GN EL G + M
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623
Query: 483 TTSADHEEEV 492
T +A +E E+
Sbjct: 624 TQTAGNEIEL 633
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP R P + GLSL + G+ ++G +G GK+T + ++ +G+ ++ G +
Sbjct: 1040 YPTRPSIP---VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 315 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
I+ ++ + +G+ QE +L++ E++ + + + + +A +E+ +++ F
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIA-ENIAYGDNSRVVSYEEIVRAAKEA--NIHQF 1153
Query: 374 HGGVADK-------QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
+ DK + + SGG K+R+++A +L+ P ++ +DE ++ LD S +
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ +A++GR I+ H + + D + + +G ++ G ++L A+ G
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKG 1261
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 127/250 (50%), Gaps = 15/250 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YP R E + GL+L + SG+ ++G +G GK+T + +M + G
Sbjct: 392 NIHFSYPSR---KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 310 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 366
+ G DIRT ++ + +GV QE +L+ T + YGR +++ + +AV+E+
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN--IRYGR-EDVTMDEIEKAVKEANA 505
Query: 367 ----LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+K + F V ++ A + SGG K+R+++A +L+ NPK++ +DE ++ LD S
Sbjct: 506 YDFIMKLPHQFDTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482
+ + +A++GR I+ H + D + F G + GN EL G + M
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVM 623
Query: 483 TTSADHEEEV 492
T +A +E E+
Sbjct: 624 TQTAGNEIEL 633
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP R P + GLSL + G+ ++G +G GK+T + ++ +G+ ++ G +
Sbjct: 1040 YPTRPSIP---VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKE 1096
Query: 315 IRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
I+ ++ + +G+ QE +L++ E++ + + + + +A +E+ +++ F
Sbjct: 1097 IKQLNVQWLRAQLGIVSQEPILFDCSIA-ENIAYGDNSRVVSYEEIVRAAKEA--NIHQF 1153
Query: 374 HGGVADK-------QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
+ DK + + SGG K+R+++A +L+ P ++ +DE ++ LD S +
Sbjct: 1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ +A++GR I+ H + + D + + +G ++ G ++L A+ G
Sbjct: 1214 LDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQKG 1261
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R T G+
Sbjct: 6 NITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 310 VQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE 365
V G ++ T ++ + +G+ Q L + T ++ L N + + V E
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123
Query: 366 SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425
L V L G D SGG K+R+++A +L NPKV+ DE ++ LDPA+ ++
Sbjct: 124 LLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
Query: 426 VVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
++K + G I+L TH M+ + +CD + + +G L
Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 5/218 (2%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AVN L+L + GE +LGP+G GKTT + M+ G+ T G Y D+ T + +
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN 84
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+ + Q +W +T E++ F ++K + + V + + + + + ++ +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQL 142
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTTHSM 443
SGG ++R++VA +++ P V+ MDEP + LD R + +K+ +Q + I TH
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481
EA + DR+ + G L IG+P E+ R +V T
Sbjct: 203 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 240
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 5/218 (2%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AVN L+L + GE +LGP+G GKTT + M+ G+ T G Y D+ T + +
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDV-TYLPPKDRN 85
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385
+ + Q +W +T E++ F ++K + + V + + + + + ++ +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE--LLNRYPAQL 143
Query: 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI--ILTTHSM 443
SGG ++R++VA +++ P V+ MDEP + LD R + +K+ +Q + I TH
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203
Query: 444 EEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481
EA + DR+ + G L IG+P E+ R +V T
Sbjct: 204 VEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 241
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 10/224 (4%)
Query: 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT 303
H I N+ K++ G A+N +SL +P+G+ +G++G +GAGK+T I + + R
Sbjct: 23 HXIKLSNITKVF--HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 304 TSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL 359
T G+ V G ++ T ++ + +G Q L + T ++ L N +
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
+ V E L V L G D SGG K+R+++A +L NPKV+ D+ ++ LDPA+
Sbjct: 141 KRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
Query: 420 RNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSL 461
++ ++K + G I+L TH + + +CD + + +G L
Sbjct: 199 TRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGEL 242
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 5/210 (2%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTT 440
SGG ++R+++ +L+ P V +DEP + LD A R + + R + GR +I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
H EA L D++ + G + +G P EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 5/210 (2%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTT 440
SGG ++R+++ +L+ P V +DEP + LD A R + + R + GR +I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
H EA L D++ + G + +G P EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 5/210 (2%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E V ++L + GE +GP+G GK+T + M+ G+ TSG ++ G D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-GEKRMNDTPPA 73
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+G+ Q L+ L+ E++ F +L K + Q V + + + L H + D++
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKP 131
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTT 440
SGG ++R+++ +L+ P V +D+P + LD A R + + R + GR +I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
H EA L D++ + G + +G P EL
Sbjct: 192 HDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 115/225 (51%), Gaps = 11/225 (4%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 321
E AV +SL + GE +LGP+G GKTT + M+ G+ + G Y+ G + D ++
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKG 73
Query: 322 IYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
I+ + + Q L+ +T +++ F +L+ + + Q V E + + L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-- 131
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GR 434
+ +++ + SGG ++R+++ +++ P+V MDEP + LD R + +K+ ++ G
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYV 479
I TH EA + DR+ + G LQ +G+P E+ + ++V
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 14/237 (5%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YP R PE SL++PSG ++GP+G+GK+T +S+++ + SGT
Sbjct: 346 NVHFAYPAR---PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402
Query: 310 VQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ G DIR ++ ++ + +G QE +L+ + + E++ + + Q V E
Sbjct: 403 LDGHDIR-QLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVA 460
Query: 368 KSVNLFH------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
+V V ++ SGG K+R+++A +L+ NPK++ +DE ++ LD +
Sbjct: 461 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 520
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + R GR +++ H + + + + + G + G +EL ++ G Y
Sbjct: 521 LVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSKPNGIY 576
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
AV LSL + GE +LGP+G GKTT + + G+ T G Y++ ++ D ++
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEK---G 76
Query: 326 MGVCPQED---------LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
+ V P+E L+ T +++ F +L+ + + + V E + + L
Sbjct: 77 VFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTE-- 134
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GR 434
+ +++ + SGG ++R+++ ++I PKV DEP + LD R +K+ ++ G
Sbjct: 135 LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGV 194
Query: 435 AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
I TH EA DR+ + G LQ +G P E+
Sbjct: 195 TTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEV 230
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 112/216 (51%), Gaps = 14/216 (6%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRI 322
A+ G+++ + GE +LG NG GK+T GI + +SG I R + ++
Sbjct: 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKL 82
Query: 323 YTSMGVCPQE--DLLWETLTGREHLLFYGRLKNLKGPA--LTQAVEESLKSVNLFHGGVA 378
S+G+ Q+ + L+ ++ + +G + N+K P + + V+ +LK + H +
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQD--VSFGAV-NMKLPEDEIRKRVDNALKRTGIEH--LK 137
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAI 436
DK S G K+R+++A L+ PKV+ +DEP+ GLDP + + ++ ++ G I
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 437 ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
I+ TH ++ CD + + +G + GNPKE+ A
Sbjct: 198 IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 14/237 (5%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YP R PE SL++PSG ++GP+G+GK+T +S+++ + SGT
Sbjct: 377 NVHFAYPAR---PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 433
Query: 310 VQGLDIRTDMDRIY--TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
+ G DIR ++ ++ + +G QE +L+ + + E++ + + Q V E
Sbjct: 434 LDGHDIR-QLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVA 491
Query: 368 KSVNLFH------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
+V V ++ SGG K+R+++A +L+ NPK++ +DE ++ LD +
Sbjct: 492 NAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEY 551
Query: 422 NLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + R GR +++ H + + + + + G + G +EL ++ G Y
Sbjct: 552 LVQEALDRLMDGRTVLVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLSKPNGIY 607
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 8/223 (3%)
Query: 260 GNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 318
G P EK A+ +SL + GEC + G G+GK+T + ++ G+ TSG G R
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKK 72
Query: 319 MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
I ++G+ Q ED + E + P V+++++ V L
Sbjct: 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV--PLVKKAMEFVGLDFDS 130
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRA 435
D+ SGG KRR+++A ++ P ++ +DEP GLD + +L +V++ K G+
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+IL +H +E DR+ + G G E +Y +
Sbjct: 191 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 8/223 (3%)
Query: 260 GNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD 318
G P EK A+ +SL + GEC + G G+GK+T + ++ G+ TSG G R
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKK 74
Query: 319 MDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376
I ++G+ Q ED + E + P V+++++ V L
Sbjct: 75 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV--PLVKKAMEFVGLDFDS 132
Query: 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRA 435
D+ SGG KRR+++A ++ P ++ +DEP GLD + +L +V++ K G+
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+IL +H +E DR+ + G G E +Y +
Sbjct: 193 VILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 235
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 326 MGVC-----PQ--------EDLLW-ETLTGREHL--LFYGRLKNLKGPALTQAVEESLKS 369
G+ PQ E+LL E G L LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 370 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VV 427
+ + D++AG+ SGG + + + +L+ NPK++ MDEP G+ P ++++N V+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
+ +G ++ H ++ D L + +G + G +E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 326 MGVC-----PQ--------EDLLWETLTGRE---HLLFYGRLKNLKGPALTQAVEESLKS 369
G+ PQ E+LL + E + LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 370 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VV 427
+ + D++AG+ SGG + + + +L+ NPK++ MDEP G+ P ++++N V+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
+ +G ++ H ++ D L + +G + G +E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 22/222 (9%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A++G+S+++ G+ ++GPNG+GK+T I+++ G + G Y + DI
Sbjct: 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81
Query: 326 MGVC-----PQ--------EDLLWETLTGRE---HLLFYGRLKNLKGPALTQAVEESLKS 369
G+ PQ E+LL + E + LFY + P + VE++ K
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWI----PKEEEMVEKAFKI 137
Query: 370 VNLFH-GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VV 427
+ + D++AG+ SGG + + + +L+ NPK++ MD+P G+ P ++++N V+
Sbjct: 138 LEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 428 KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
+ +G ++ H ++ D L + +G + G +E
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 103/191 (53%), Gaps = 7/191 (3%)
Query: 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG 341
+LGP GAGK+ F+ ++ GI + G + G DI T + +G PQ+ L+ L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI-TPLPPERRGIGFVPQDYALFPHLSV 87
Query: 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401
+ + YG L+N++ + V E + + + H + D++ + SGG ++R+++A +L+
Sbjct: 88 YRN-IAYG-LRNVERVERDRRVREMAEKLGIAH--LLDRKPARLSGGERQRVALARALVI 143
Query: 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDG 459
P+++ +DEP + +D ++ L ++ ++ I+ TH + EA L D + + ++G
Sbjct: 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNG 203
Query: 460 SLQCIGNPKEL 470
+ G KEL
Sbjct: 204 RIVEKGKLKEL 214
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 106/210 (50%), Gaps = 8/210 (3%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324
++G++ ++ G +LG G+GK+T ++++ + G V LD+RT + +
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA----VEESLKSVNLFHGGVADK 380
+ PQE +L+ T +E+L +GR + A + + + S+ + ++
Sbjct: 418 HISAVPQETVLFSG-TIKENLK-WGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTT 440
+SGG K+RLS+A +L+ PKV+ +D+ ++ +DP + + + +KR +G + T
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+ A L D++ + +G + G KEL
Sbjct: 536 QKIPTA-LLADKILVLHEGKVAGFGTHKEL 564
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 117/215 (54%), Gaps = 13/215 (6%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIY 323
+ G+++ + GE ++GP+G+GK+TF+ + + G + G++++ T+++++
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G+ Q L+ +T ++ +K K P +A ++++ ++ G+ DK
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPR-EKAEAKAMELLDKV--GLKDKAHA 155
Query: 384 ---KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILT 439
SGG +R+++A +L PK++ DEP++ LDP + +V+K+ A +G +++
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 440 THSMEEAEALCDRLGIFVDGS-LQCIGNPKELKAR 473
TH M A + DR+ +F+DG + G P++L R
Sbjct: 216 THEMGFAREVGDRV-LFMDGGYIIEEGKPEDLFDR 249
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 117/215 (54%), Gaps = 13/215 (6%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMDRIY 323
+ G+++ + GE ++GP+G+GK+TF+ + + G + G++++ T+++++
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G+ Q L+ +T ++ +K K P +A ++++ ++ G+ DK
Sbjct: 79 EEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPR-EKAEAKAMELLDKV--GLKDKAHA 134
Query: 384 ---KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILT 439
SGG +R+++A +L PK++ DEP++ LDP + +V+K+ A +G +++
Sbjct: 135 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 440 THSMEEAEALCDRLGIFVDGS-LQCIGNPKELKAR 473
TH M A + DR+ +F+DG + G P++L R
Sbjct: 195 THEMGFAREVGDRV-LFMDGGYIIEEGKPEDLFDR 228
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 20/228 (8%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
+ E + ++L++ GE +G +G GK+T I+++ TSG + G +I+ +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 320 D-RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA 378
+ +G+ Q+++L+ T +E++L GR A + V E+ K N H +
Sbjct: 410 TGSLRNQIGLVQQDNILFSD-TVKENILL-GR-----PTATDEEVVEAAKMANA-HDFIM 461
Query: 379 ------DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428
D + G K SGG K+RLS+A + NP ++ +DE ++ LD S + + +
Sbjct: 462 NLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 521
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
+ R ++ H + D++ + +G + G +EL A+ G
Sbjct: 522 VLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAKQGA 568
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325
A+ G+ L +P G+ ++G NGAGKTT +S + G+ R G G DI +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 326 MGVC--PQEDLLWETLTGREHLLF--YGRLKNLKGP--------ALTQAVEESLKSVNLF 373
G+ P+ ++ LT E+L Y R K+ +G +L ++E LK +
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQL--- 136
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ- 432
G SGG ++ L++ +L PK++ DEPS GL P + ++ V+++ Q
Sbjct: 137 --------GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 433 GRAIILTTHS 442
G I+L +
Sbjct: 189 GTTILLVEQN 198
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Query: 261 NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319
+ +K + ++ + G+ ++GP G+GKTT +++++ G V G+DIR
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHG 375
+ +S+G+ Q+ +L+ T T +E+L YG + +K A + +K + +
Sbjct: 425 SSLRSSIGIVLQDTILFST-TVKENLK-YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYE 482
Query: 376 GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 435
V S G ++ L++ + + NPK++ +DE ++ +D + ++ + + +G+
Sbjct: 483 TVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKT 542
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
I+ H + + D + + DG + +G EL + G Y
Sbjct: 543 SIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFYY 584
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 19 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 79 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 138
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+ H
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 198
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 199 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+ H
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 196
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 197 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 108/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+ H
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 202
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 203 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 107/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G G+GK+T ++ +G + G D+ D + +
Sbjct: 19 VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 78
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 79 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 138
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+ H
Sbjct: 139 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH 198
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 199 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 17/228 (7%)
Query: 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTT 304
++LR +Y R+G + A +G+SL + ++G + +GK+T I M R
Sbjct: 8 EDLRAVYLVREGTIK--AADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRIL 65
Query: 305 SGTAYVQGLDIRT----DMDRI-YTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLK-- 355
SG +G D+ T ++ +I + + + PQ + L T+ EH ++
Sbjct: 66 SGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWS 125
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL 415
L + E L+ V L V + + SGGMK+R+ +A++L+ +P V+ +DEP++ L
Sbjct: 126 HSELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSAL 185
Query: 416 DPASRNNLWNVVKRAKQGRAI--ILTTHSMEEAEALCDRLGIFVDGSL 461
D ++ ++ ++K K+ I I TH + A L D++ + G+L
Sbjct: 186 DVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNL 233
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 108/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ D+ ++ LD S + + + + +GR +I+ H
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIIIAH 202
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 203 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 106/230 (46%), Gaps = 9/230 (3%)
Query: 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYTSMGV 328
+S + G+ ++GP+GAGK+T + ++ +SG + G DI + + + +GV
Sbjct: 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132
Query: 329 CPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384
PQ+ +L+ + YGR+ ++ A + +++ + + ++ K
Sbjct: 133 VPQDTVLFNDTIADN--IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444
SGG K+R+++A +++ P ++ +DE ++ LD ++ + + + R I+ H +
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 445 EAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADHEEEVES 494
D++ + DG + G + L +R GG Y EE E
Sbjct: 251 TV-VNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSED 298
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI-- 322
A+ ++L + GE ++GP+G+GK+T ++++ + + T G Y+ + D D +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 323 --YTSMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+G Q+ L LT E++ L + + G + E LK L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-EERF 138
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRA 435
A+ + + SGG ++R+++A +L NP ++ D+P+ LD + + ++K+ + G+
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQ 462
+++ TH + A +R+ DG ++
Sbjct: 199 VVVVTHDINVAR-FGERIIYLKDGEVE 224
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 101/207 (48%), Gaps = 12/207 (5%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI-- 322
A+ ++L + GE ++GP+G+GK+T ++++ + + T G Y+ + D D +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 323 --YTSMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+G Q+ L LT E++ L + + G + E LK L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-EERF 138
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRA 435
A+ + + SGG ++R+++A +L NP ++ D+P+ LD + + ++K+ + G+
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT 198
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQ 462
+++ TH + A +R+ DG ++
Sbjct: 199 VVVVTHDINVAR-FGERIIYLKDGEVE 224
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E L+ L G+ +LG NG GK+T + +++GI R G +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------EV 64
Query: 323 YTSMGVCPQ-------EDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374
Y S+G PQ +L L GR H+ + + K+ Q ++L +NL H
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTH 120
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
+A ++ SGG ++ + +A ++ K++ +DEP++ LD A+++ + +++ Q +
Sbjct: 121 --LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 435 --AIILTTHSMEEAEALCDR 452
++ TTH + A+ ++
Sbjct: 179 NMTVVFTTHQPNQVVAIANK 198
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 93/175 (53%), Gaps = 15/175 (8%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-----LDIRTDMDRIYTSMGVCP 330
+G+ + ++G NG+GKTT + ++ G+ +G ++ G +R ++ ++ + P
Sbjct: 36 TGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPADPFLLRKNVGYVFQN----P 90
Query: 331 QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390
++ T+ E + F + L + + +++ L+ V L G+A SGG K
Sbjct: 91 SSQIIGATV--EEDVAFSLEIMGLDESEMRKRIKKVLELVGL--SGLAAADPLNLSGGQK 146
Query: 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME 444
+RL++A L + + + +DEP + LDP S+ ++ V++ K +G+ IIL TH +E
Sbjct: 147 QRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE 201
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 106/233 (45%), Gaps = 15/233 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YPGR E A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 346 NVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 310 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 366
+ G D+R + + + + Q L+ + Y R + + +A +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--IAYARTEEYSREQIEEAARMAYA 459
Query: 367 LKSVNLFHGGVADKQAGK----YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+ +N G+ D G+ SGG ++R+++A +L+ + ++ +DE ++ LD S
Sbjct: 460 MDFINKMDNGL-DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ + ++ R ++ H + E D + + DG + G EL A++G
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEQ-ADEIVVVEDGIIVERGTHSELLAQHG 570
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 12/207 (5%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI-- 322
A+ ++L + GE + GP+G+GK+T ++++ + + T G Y+ + D D +
Sbjct: 20 ALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 323 --YTSMGVCPQEDLLWETLTGREHL---LFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
+G Q+ L LT E++ L + G + E LK L
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAEL-EERF 138
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRA 435
A+ + + SGG ++R+++A +L NP ++ DEP+ LD + + ++K+ + G+
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKT 198
Query: 436 IILTTHSMEEAEALCDRLGIFVDGSLQ 462
+++ TH + A +R+ DG ++
Sbjct: 199 VVVVTHDINVAR-FGERIIYLKDGEVE 224
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 107/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 136
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+
Sbjct: 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 196
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 197 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 107/226 (47%), Gaps = 4/226 (1%)
Query: 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR-TDMDRIY 323
V ++ ++L++ GE G++G +G+GK+T ++ +G + G D+ D + +
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82
Query: 324 TSMGVCPQED-LLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+GV Q++ LL ++ L G ++ + A + + + + + +Q
Sbjct: 83 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTH 441
SGG ++R+++A +L+ NPK++ DE ++ LD S + + + + +GR +I+
Sbjct: 143 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 202
Query: 442 SMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSAD 487
+ + DR+ + G + G KEL + Y + +D
Sbjct: 203 RLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 103/217 (47%), Gaps = 13/217 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR- 321
++ +N +SL + SGE ++GPNGAGK+T + ++ G + G ++ G ++ + +
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+ + V Q L + E ++ GR G QA+++ + + +A +
Sbjct: 83 LARTRAVMRQYSELAFPFSVSE-VIQMGR-APYGGSQDRQALQQVMAQTDCL--ALAQRD 138
Query: 382 AGKYSGGMKRRLSVAISLIG------NPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQG 433
SGG ++R+ +A L P+ +++DEP++ LD + + ++++ ++
Sbjct: 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
A+ H + A DR+ + G L G P+E+
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 15/213 (7%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI---RTDMDRIY 323
+N +SL+L GE ++G +G GKTT + + G + SG + G I T++
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG 383
+G QE +L+ LT + + YG L N KG A E L G+++ AG
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRN-IAYG-LGNGKG---RTAQERQRIEAMLELTGISEL-AG 133
Query: 384 KY----SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAKQGRAII 437
+Y SGG ++R ++A +L +P+++ +DEP + LD R + + G++ +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 438 LTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
+H EEA DR+ + G + +P EL
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 119/240 (49%), Gaps = 29/240 (12%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
+L K Y G + + G+SL +G+ ++G +G+GK+TF+ + + + + G
Sbjct: 11 DLHKRYGGHE------VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 310 VQGLDIRTDMDR--------------IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355
V G +I D+ + T + + Q LW +T E+++ ++ L
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM-EAPIQVL- 122
Query: 356 GPALTQAVEESLKSVNLFHGGVADKQAGKY----SGGMKRRLSVAISLIGNPKVVYMDEP 411
G + A E +LK L G+ ++ GKY SGG ++R+S+A +L P V+ DEP
Sbjct: 123 GLSKHDARERALKY--LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEP 180
Query: 412 STGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++ LDP + ++++ A++G+ +++ TH M A + + G ++ G+P+++
Sbjct: 181 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-RTDMDRIYT 324
+ ++ +PSG ++G G+GK+T I+ ++ G + G ++ + + + I +
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKST-IAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93
Query: 325 SMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--------- 374
+G+ PQ+ +L+ ET+ ++ + YG+L A + V ++ KS L+
Sbjct: 94 IIGIVPQDTILFNETI---KYNILYGKL-----DATDEEVIKATKSAQLYDFIEALPKKW 145
Query: 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGR 434
+ + K SGG ++R+++A L+ +PK+V DE ++ LD + V+ ++ R
Sbjct: 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR 205
Query: 435 AIILTTHSM 443
+I+ H +
Sbjct: 206 TLIIIAHRL 214
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 15/233 (6%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YPGRD P A+ ++L +P+G+ ++G +G+GK+T S++ G
Sbjct: 346 NVTFTYPGRDV-P---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 310 VQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES-- 366
+ G D+R + + + + Q L+ + Y R + + +A +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--IAYARTEQYSREQIEEAARMAYA 459
Query: 367 LKSVNLFHGGVADKQAGK----YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422
+ +N G+ D G+ SGG ++R+++A +L+ + ++ +DE ++ LD S
Sbjct: 460 MDFINKMDNGL-DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 423 LWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475
+ + ++ R ++ H + E D + + DG + G +L G
Sbjct: 519 IQAALDELQKNRTSLVIAHRLSTIEK-ADEIVVVEDGVIVERGTHNDLLEHRG 570
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP +P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G
Sbjct: 26 YPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82
Query: 315 -IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
++ D ++T + QE LL+ + RE++ YG + +T ES + F
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMES--GAHDF 138
Query: 374 HGGVA---DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
G D + G + SGG ++ +++A +LI P+++ +D+ ++ LD ++ + +
Sbjct: 139 ISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRL 198
Query: 427 VKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + + R ++L TH + AE + +GS+ G +L R GG Y
Sbjct: 199 LYESPEWASRTVLLITHQLSLAER-AHHILFLKEGSVCEQGTHLQLMER-GGCY 250
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 21/223 (9%)
Query: 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307
++N++K+ G + + G+SL++ GE ++G +G+GK+T + ++ + T G
Sbjct: 7 AENIKKVIRGYE------ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 308 AYVQGLDIRTDMDRIYT-----SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQA 362
+++G ++ ++ + +G Q L LT E+++ LK K +
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIV-PMLKMGKPKKEAKE 119
Query: 363 VEESLKSVNLFHGGVADKQAGK---YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419
E L L G+ DK + K SGG ++R+++A +L P +++ DEP+ LD A+
Sbjct: 120 RGEYL----LSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175
Query: 420 RNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461
+ ++ +K + G +I++ TH E AE L R DG +
Sbjct: 176 TKRVMDIFLKINEGGTSIVMVTHERELAE-LTHRTLEMKDGKV 217
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 30/191 (15%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
E+ ++ ++L + +GE +LGPNG+GKTT + + G+ SG ++ G+++R + I
Sbjct: 17 ERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYI 74
Query: 323 YTS--------MGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
S +GV + + L+E L G + LF LK LK EE L+
Sbjct: 75 RYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALK------LGEEILR----- 123
Query: 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG 433
++ K S G + +++L P++V +DEP +D A R+ + +K + G
Sbjct: 124 ------RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK--EYG 175
Query: 434 RAIILTTHSME 444
+ IL TH ++
Sbjct: 176 KEGILVTHELD 186
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 117/249 (46%), Gaps = 25/249 (10%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP R P+ + + GL+ L GE ++GPNG+GK+T +++ + + T G + G
Sbjct: 24 YPNR---PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKP 80
Query: 315 IRTDMDR-IYTSMGVCPQEDLLWETLTGR--EHLLFYGRLKNLKGPALTQAVEESLKS-V 370
+ R ++ + QE ++ GR + + YG + P + + ++KS
Sbjct: 81 LPQYEHRYLHRQVAAVGQEPQVF----GRSLQENIAYGLTQK---PTMEEITAAAVKSGA 133
Query: 371 NLFHGGVA-------DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423
+ F G+ D+ + SGG ++ +++A +LI P V+ +D+ ++ LD S+ +
Sbjct: 134 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 424 WNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481
++ + + R+++L T + E D + G+++ G ++L + G Y
Sbjct: 194 EQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIREGGTHQQLMEKK-GCYWAM 251
Query: 482 MTTSADHEE 490
+ AD E
Sbjct: 252 VQAPADAPE 260
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
GE G+LGPNG GKTTF +++G G+ + + RI+ + Q+
Sbjct: 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--- 349
Query: 336 WETLTGREHLLFYGRLKNLKGPALTQA---VEESLKSVNLFHGGVADKQAGKYSGGMKRR 392
L+N AL+ + EE K +NL + + SGG ++
Sbjct: 350 --------------YLENASKDALSTSSWFFEEVTKRLNLHR--LLESNVNDLSGGELQK 393
Query: 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII--LTTHSMEEAEALC 450
L +A +L + +D+PS+ LD R + +KR + R + + H + + +
Sbjct: 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA 453
Query: 451 DRLGIF 456
DR+ +F
Sbjct: 454 DRIIVF 459
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 264 KVAVNGLSL-ALPS---GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---I 315
+ VNG L LP+ G+LG NG GKTT + ++ G G + G D
Sbjct: 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLK 67
Query: 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQ--------AVEES 366
R IY +L + + +++ + + LK LT+ V+E
Sbjct: 68 RFRGKEIYNYFKELYSNEL--KIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
L NL++ K A SGG +RL VA SL+ V D+PS+ LD R N+
Sbjct: 126 LNMTNLWN-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKA 180
Query: 427 VKRAKQGRAIILTTHSMEEAEALCDRLGIF 456
++ + + +I+ H + + L D + I
Sbjct: 181 IRELLKNKYVIVVDHDLIVLDYLTDLIHII 210
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQE 332
+ GE G++GPNG GKTTF+ + G+ T G I D+ Y + E
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGK-------IEWDLTVAYKPQYIKADYE 361
Query: 333 DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392
++E L+ + L + + L ++L+ D++ + SGG +R
Sbjct: 362 GTVYELLSKID-------ASKLNSNFYKTELLKPLGIIDLY-----DREVNELSGGELQR 409
Query: 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALC 450
+++A +L+ + + +DEPS LD R + ++ K + ++ H + + +
Sbjct: 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVS 469
Query: 451 DRLGIF 456
DRL +F
Sbjct: 470 DRLXVF 475
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIR----TDMDRIYTSMG-- 327
G G++GPNG GK+T + ++ G I G+ IR ++ + +
Sbjct: 46 EGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV-IRAFRGNELQNYFEKLKNG 104
Query: 328 -----VCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
V PQ DL+ + + G+ ++ LK T +EE +K++ L + V +++
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGK-------VIELLKKADETGKLEEVVKALELEN--VLERE 155
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTT 440
SGG +R+++A +L+ N + DEPS+ LD R N ++R +++G+++++
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 441 HSMEEAEALCD 451
H + + L D
Sbjct: 216 HDLAVLDYLSD 226
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDL 334
GE G++GPNG GKTTF+ M+ G+ T G + D+ Y + + E
Sbjct: 367 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYKPQYIKAEYEGT 419
Query: 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394
++E L+ + L + + L ++L+ V D SGG +R++
Sbjct: 420 VYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVA 467
Query: 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDR 452
+A +L+ + + +DEPS LD R + ++ K + ++ H + + + DR
Sbjct: 468 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 527
Query: 453 LGIF 456
L +F
Sbjct: 528 LIVF 531
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 53/205 (25%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
G G++GPNG GKTT + ++ G +C D
Sbjct: 102 DGMVVGIVGPNGTGKTTAVKILAG-----------------------QLIPNLCEDNDS- 137
Query: 336 WETLT----GREHLLFYGRLKN-------------LKGPALTQAVEESLKSVN------- 371
W+ + G E ++ RLKN L A+ V E LK V+
Sbjct: 138 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 197
Query: 372 ----LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
L V D++ + SGG +R+++A +L+ + DEPS+ LD R + V+
Sbjct: 198 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 257
Query: 428 KR-AKQGRAIILTTHSMEEAEALCD 451
+R A +G+A+++ H + + L D
Sbjct: 258 RRLANEGKAVLVVEHDLAVLDYLSD 282
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 22/184 (11%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDL 334
GE G++GPNG GKTTF+ M+ G+ T G + D+ Y + + E
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK-------VEWDLTVAYKPQYIKAEYEGT 433
Query: 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394
++E L+ + L + + L ++L+ V D SGG +R++
Sbjct: 434 VYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQRVA 481
Query: 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDR 452
+A +L+ + + +DEPS LD R + ++ K + ++ H + + + DR
Sbjct: 482 IAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 541
Query: 453 LGIF 456
L +F
Sbjct: 542 LIVF 545
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 53/205 (25%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
G G++GPNG GKTT + ++ G +C D
Sbjct: 116 DGMVVGIVGPNGTGKTTAVKILAG-----------------------QLIPNLCEDNDS- 151
Query: 336 WETL----TGREHLLFYGRLKN-------------LKGPALTQAVEESLKSVN------- 371
W+ + G E ++ RLKN L A+ V E LK V+
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 372 ----LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
L V D++ + SGG +R+++A +L+ + DEPS+ LD R + V+
Sbjct: 212 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271
Query: 428 KR-AKQGRAIILTTHSMEEAEALCD 451
+R A +G+A+++ H + + L D
Sbjct: 272 RRLANEGKAVLVVEHDLAVLDYLSD 296
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 111/234 (47%), Gaps = 19/234 (8%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP +P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G
Sbjct: 26 YPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82
Query: 315 -IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
++ D ++T + QE LL+ + RE++ YG + +T ES + F
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMES--GAHDF 138
Query: 374 HGGVA---DKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
G D + G + SGG ++ +++A +LI P+++ +D ++ LD ++ + +
Sbjct: 139 ISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 427 VKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + + R ++L T + AE + +GS+ G +L R GG Y
Sbjct: 199 LYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER-GGCY 250
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 103/232 (44%), Gaps = 33/232 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR----TD 318
EK A++ +S ++P G+ ++G +G+GK+T ++ SG+ + G D+R T+
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-----LKGPALTQAVEESLKSV--- 370
+ R + L + LF + N +G + +E++ +
Sbjct: 415 LRRHF--------------ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM 460
Query: 371 ----NLFHG--GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424
N+ G V + SGG ++R+++A +L+ + V+ +DE ++ LD S +
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476
+ ++ + +++ H + E D + + +G + G +L A+ G
Sbjct: 521 AALDELQKNKTVLVIAHRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQDGA 571
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326
+NG++ ++P G ++G G GK++ +S ++ G ++G S+
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SV 68
Query: 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-- 384
PQ+ + + + RE++LF +L+ ++ QA L + + G + K
Sbjct: 69 AYVPQQAWI-QNDSLRENILFGCQLEEPYYRSVIQAC-ALLPDLEILPSGDRTEIGEKGV 126
Query: 385 -YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVV--KRAKQGRAIILTT 440
SGG K+R+S+A ++ N + D+P + +D +++ NV+ K + + IL T
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 441 HSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 483
HSM + D + + G + +G+ +EL AR G F T
Sbjct: 187 HSMSYLPQV-DVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 317
E + LS + +GE ++GPNGAGK+T ++ M G+T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 318 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 375
+ R Y S P +W LT +H L N AL A+++ L +S N
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTN---- 125
Query: 376 GVADKQAGKYSGGMKRRLSVA-----ISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVK 428
+ SGG +R+ +A I+ NP +++ +D+P LD A ++ L ++
Sbjct: 126 --------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILS 177
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++QG AI++++H + R + G + G +E+
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 101/223 (45%), Gaps = 29/223 (13%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 317
E + LS + +GE ++GPNGAGK+T ++ M G+T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 318 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 375
+ R Y S P +W LT +H L N AL A+++ L +S N
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTN---- 125
Query: 376 GVADKQAGKYSGGMKRRLSVA-----ISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVK 428
+ SGG +R+ +A I+ NP +++ +D+P LD A ++ L ++
Sbjct: 126 --------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILS 177
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470
++QG AI++++H + R + G + G +E+
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 220
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Query: 284 GPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGR 342
GP+G GK+T S++ + T+G + G I ++ + +G Q+ + T R
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIR 93
Query: 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-------QAGKYSGGMKRRLSV 395
E+L YG + L Q ++ L F + D+ + K SGG ++RL++
Sbjct: 94 ENLT-YGLEGDYTDEDLWQVLD--LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150
Query: 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455
A + + NPK++ +DE + LD S + + + +GR ++ H + D++
Sbjct: 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYF 209
Query: 456 FVDGSLQCIGNPKELKARY 474
G + G EL A +
Sbjct: 210 IEKGQITGSGKHNELVATH 228
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 19/234 (8%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314
YP +P + GL+ L G+ ++GPNG+GK+T +++ + + T G + G
Sbjct: 26 YPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82
Query: 315 -IRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF 373
++ D ++T + QE LL+ + RE++ YG + +T ES + F
Sbjct: 83 LVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMES--GAHDF 138
Query: 374 HGGVA---DKQAGKYSG----GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426
G D + G+ G ++ +++A +LI P+++ +D ++ LD ++ + +
Sbjct: 139 ISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL 198
Query: 427 VKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478
+ + + R ++L T + AE + +GS+ G +L R GG Y
Sbjct: 199 LYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER-GGCY 250
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 23/235 (9%)
Query: 240 PGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299
P SH +I L +I + G K + +S + G+ + + G NGAGKTT ++++
Sbjct: 15 PRGSHXLI--QLDQIGRXKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69
Query: 300 ITRTTSGTAYVQGL---DIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356
TSGT + G + + + +G L E E ++ K
Sbjct: 70 YEPATSGTVNLFGKXPGKVGYSAETVRQHIGFVSHS--LLEKFQEGERVIDVVISGAFKS 127
Query: 357 PALTQAVEESLKSVNLFH--------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408
+ Q +++ ++ N H A + G S G K+R+ +A +L G P+V+ +
Sbjct: 128 IGVYQDIDDEIR--NEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLIL 185
Query: 409 DEPSTGLDPASRNNLWNVVKRAKQGR---AIILTTHSMEEAEALCDRLGIFVDGS 460
DEP+ GLD +R +L +++ A I TH +EE A ++ + DG
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQ 240
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322
+K + +++ + G GPNG GKTT + + + G G+ I +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA 382
+ P+E ++ ++ ++L L +K + ++L+SV + K+
Sbjct: 81 F----FLPEEIIVPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLD---LKKKL 131
Query: 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHS 442
G+ S G RR+ +A +L+ N ++ +D+P +D S++ + + + + I++ S
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII--S 189
Query: 443 MEEAEALCD 451
E + CD
Sbjct: 190 SREELSYCD 198
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 35/237 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 317
E + LS + +GE ++GPNGAGK+T ++ G T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 318 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 375
+ R Y S P +W LT +H L N AL A+++ L +S N
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTN---- 125
Query: 376 GVADKQAGKYSGGMKRRLSVA-----ISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVK 428
+ SGG +R+ +A I+ NP +++ +DEP LD A ++ L ++
Sbjct: 126 --------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG------NPKELKARYGGSY 478
++QG AI+ ++H + R + G G P L YG ++
Sbjct: 178 ALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNF 234
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335
E M+G NG GKTT I ++ G + G D+ ++ SM PQ+ +
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEG----------QDIPKLNVSMK--PQK--I 422
Query: 336 WETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394
G LF+ +++ P V + L+ + D++ SGG +R++
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----DDIIDQEVQHLSGGELQRVA 477
Query: 395 VAISLIGNPKVVYM-DEPSTGLDPASRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCD 451
+ ++L G P +Y+ DEPS LD R V++R + + H A L D
Sbjct: 478 IVLAL-GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD 536
Query: 452 RLGIF 456
++ +F
Sbjct: 537 KVIVF 541
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 20/191 (10%)
Query: 277 GECFGMLGPNGAGKTTFISMMIGITRTTSG-----------TAYVQGLDIR---TDMDRI 322
G+ G++G NG GK+T + ++ G + G Y +G +++ T M
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 323 YTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381
+ PQ D + + G + G L L+ + V+ +K + L V +
Sbjct: 163 DIKAIIKPQYVDNIPRAIKGPVQKV--GELLKLRMEKSPEDVKRYIKILQL--ENVLKRD 218
Query: 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTT 440
K SGG +R ++ +S + V DEPS+ LD R N +++ + +I
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 441 HSMEEAEALCD 451
H + + L D
Sbjct: 279 HDLSVLDYLSD 289
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLD----IRT 317
E + LS + +GE ++GPNGAGK+T ++ G T + Q L+ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 318 DMDRIYTSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL-KSVNLFHG 375
+ R Y S P +W LT +H L N AL A+++ L +S N
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTN---- 125
Query: 376 GVADKQAGKYSGGMKRRLSVA-----ISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVK 428
+ SGG +R+ +A I+ NP +++ +DEP LD A ++ L ++
Sbjct: 126 --------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 429 R-AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG------NPKELKARYGGSY 478
+QG AI+ ++H + R + G G P L YG ++
Sbjct: 178 ALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQAYGXNF 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 92/209 (44%), Gaps = 26/209 (12%)
Query: 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325
+ +S ++ G+ G+LG G+GK+T +S + + T G + G+ + +++ +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSITLEQWRKA 95
Query: 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGK 384
GV PQ+ +F G + P + +E K + + V ++ GK
Sbjct: 96 FGVIPQK-----------VFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGK 144
Query: 385 Y-----------SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG 433
S G K+ + +A S++ K++ +DEPS LDP + + +K+A
Sbjct: 145 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFAD 204
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQ 462
+IL + EA CD+ + + ++
Sbjct: 205 CTVILCEARI-EAMLECDQFLVIEENKVR 232
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDI--RTD 318
+K + GLSL + GE ++GPNG+GK+T + + G T GT +G D+ +
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 319 MDR----IYTSM-------GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
DR I+ + GV Q + T + Y + L +EE +
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQ----FFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 128
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
+ + + +SGG K+R + + P++ +DE +GLD + + + V
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 428 KRAKQG-RAIILTTH 441
+ G R+ I+ TH
Sbjct: 189 NSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDI--RTD 318
+K + GLSL + GE ++GPNG+GK+T + + G T GT +G D+ +
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 319 MDR----IYTSM-------GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESL 367
DR I+ + GV Q + T + Y + L +EE +
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQ----FFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427
+ + + +SGG K+R + + P++ +DE +GLD + + + V
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 428 KRAKQG-RAIILTTH 441
+ G R+ I+ TH
Sbjct: 208 NSLRDGKRSFIIVTH 222
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 317
K+ +N L L +G+ GPNG GK+T + T+ T YV+
Sbjct: 442 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEH----- 496
Query: 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
D+D ++ V D ++E+ G +A+++ L +
Sbjct: 497 DIDGTHSDTSVL---DFVFES-----------------GVGTKEAIKDKLIEFGFTDEXI 536
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 437
A + SGG K +L++A +++ N ++ +DEP+ LD + N W V G I
Sbjct: 537 AXPISA-LSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAWLVNYLNTCGITSI 593
Query: 438 LTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR-YGGSY 478
+H +F+D + I N + LK R Y G++
Sbjct: 594 TISHD-----------SVFLDNVCEYIINYEGLKLRKYKGNF 624
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
P + +EE + L V+ + SGG K +L +A P ++ +DEP+ LD
Sbjct: 868 PLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Query: 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
S L +K + G +I+ THS E + L + + DG
Sbjct: 928 RDSLGALSKALKEFEGG--VIIITHSAEFTKNLTEEVWAVKDG 968
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGL 313
YPG P+ +N +L S ++GPNGAGK+T I+++ G TSG Y +
Sbjct: 675 YPGT-SKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 730
Query: 314 DI----RTDMDRIYTSMGVCPQEDLLWETLTGRE 343
I + I + + P E + W TG +
Sbjct: 731 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 764
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 46/222 (20%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 317
K+ +N L L +G+ GPNG GK+T + T+ T YV+
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYVEH----- 502
Query: 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
D+D ++ V D ++E+ G +A+++ L +
Sbjct: 503 DIDGTHSDTSVL---DFVFES-----------------GVGTKEAIKDKLIEFGFTDEXI 542
Query: 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 437
A + SGG K +L++A +++ N ++ +DEP+ LD + N W V G I
Sbjct: 543 AXPISA-LSGGWKXKLALARAVLRNADILLLDEPTNHLD--TVNVAWLVNYLNTCGITSI 599
Query: 438 LTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR-YGGSY 478
+H +F+D + I N + LK R Y G++
Sbjct: 600 TISHD-----------SVFLDNVCEYIINYEGLKLRKYKGNF 630
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
P + +EE + L V+ + SGG K +L +A P ++ +DEP+ LD
Sbjct: 874 PLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459
S L +K + G +I+ THS E + L + + DG
Sbjct: 934 RDSLGALSKALKEFEGG--VIIITHSAEFTKNLTEEVWAVKDG 974
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 255 YPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGL 313
YPG P+ +N +L S ++GPNGAGK+T I+++ G TSG Y +
Sbjct: 681 YPGT-SKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 736
Query: 314 DI----RTDMDRIYTSMGVCPQEDLLWETLTGRE 343
I + I + + P E + W TG +
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 770
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 54/226 (23%)
Query: 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG------ITRTTSGTAYVQGLDIRT 317
K+ +N L L +G+ GPNG GK+T + + T+ T YV+
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEH----- 502
Query: 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377
D+D ++ V D ++E+ G +E++K L G
Sbjct: 503 DIDGTHSDTSVL---DFVFESGVG---------------------TKEAIKD-KLIEFGF 537
Query: 378 ADKQAG----KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQG 433
D+ SGG K +L++A +++ N ++ +DEP+ LD + N W V G
Sbjct: 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAWLVNYLNTCG 595
Query: 434 RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR-YGGSY 478
I +H +F+D + I N + LK R Y G++
Sbjct: 596 ITSITISHD-----------SVFLDNVCEYIINYEGLKLRKYKGNF 630
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416
P + +EE + L V+ + SGG K +L +A P ++ +DEP+ LD
Sbjct: 874 PLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466
S L +K + G +I+ THS E + L + + DG + G+
Sbjct: 934 RDSLGALSKALKEFEGG--VIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309
N+ YPG P+ +N +L S ++GPNGAGK+T I+++ G TSG Y
Sbjct: 676 NMEFQYPGT-SKPQITDIN-FQCSLSSR--IAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 310 V-QGLDI----RTDMDRIYTSMGVCPQEDLLWETLTGRE 343
+ I + I + + P E + W TG +
Sbjct: 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGED 770
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGT 307
+R ++ DG + + G++L +P GE ++GPNGAGK+T ++ G T G
Sbjct: 5 EIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE 61
Query: 308 AYVQG---LDIRTDMDRIYTSMGVCPQ--EDLLWETLTGREHLLFYGRLKNLKGPA-LTQ 361
+ G L++ D +R + + Q ++ T+ L +L G A
Sbjct: 62 ILLDGENILELSPD-ERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421
V+++L+ ++ ++ +SGG K+R + L+ P +DE +GLD +
Sbjct: 121 KVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALK 180
Query: 422 NLWNVVK--RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK---ELKAR 473
+ V R A+++T + D++ + +DG + G P+ EL+A+
Sbjct: 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAK 237
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
GNP + ++L + GE + G G+GKT+ + +++G + G G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 99
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLKGPALTQAVEESLKSVN-- 371
+ C Q + T +E+++F Y +K L Q + + + N
Sbjct: 100 -----RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRA 430
L GGV SGG + R+S+A ++ + + +D P LD + ++ + V +
Sbjct: 154 LGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ IL T ME D++ I GS G EL++
Sbjct: 208 MANKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 32/222 (14%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
GNP + ++L + GE + G G+GKT+ + +++G + G G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 99
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLKGPALTQAVEESLKSVN-- 371
+ C Q + T +E+++F Y +K L Q + + + N
Sbjct: 100 -----RVSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRA 430
L GGV SGG + R+S+A ++ + + +D P LD + ++ + V +
Sbjct: 154 LGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ IL T ME D++ I GS G EL++
Sbjct: 208 MANKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 392 RLSVAISLIGNP-KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450
RL++A +LIGN + + +DEP+ LD R L + ++ K +I+ TH E +
Sbjct: 294 RLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVAD 353
Query: 451 DRLGIFVDGSLQCI 464
+ + DG++ +
Sbjct: 354 VIINVKKDGNVSKV 367
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 37/224 (16%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
GNP + ++L + GE + G G+GKT+ + +++G + G G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 99
Query: 320 DRIYTSMGVCPQEDLLW-------ETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVN 371
+ C Q W E + G + + R K+ +K L Q + + + N
Sbjct: 100 -----RVSFCSQ--FSWIMPGTIKENIIGVSYDEY--RYKSVVKACQLQQDITKFAEQDN 150
Query: 372 --LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVK 428
L GGV SGG + R+S+A ++ + + +D P LD + ++ + V
Sbjct: 151 TVLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 429 RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ + IL T ME D++ I GS G EL++
Sbjct: 205 KLMANKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 247
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 33/239 (13%)
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
T+ ++ +N+ + G P + ++ + G+ + G GAGKT+ + M++G
Sbjct: 3 TTTEVVMENVTAFWE-EGGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 302 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLK 355
+ G G + C Q + T +E+++F Y +K
Sbjct: 59 EPSEGKIKHSG------------RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIK 105
Query: 356 GPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
L + + + + N+ GG+ SGG + R+S+A ++ + + +D P
Sbjct: 106 ACQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFG 159
Query: 414 GLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
LD + ++ + V + + IL T ME + D++ I +GS G EL+
Sbjct: 160 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 217
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 33/239 (13%)
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
T+ ++ +N+ + G P + ++ + G+ + G GAGKT+ + M++G
Sbjct: 15 TTTEVVMENVTAFWE-EGGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 70
Query: 302 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLK 355
+ G G + C Q + T +E+++F Y +K
Sbjct: 71 EPSEGKIKHSG------------RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIK 117
Query: 356 GPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413
L + + + + N+ GG+ SGG + R+S+A ++ + + +D P
Sbjct: 118 ACQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFG 171
Query: 414 GLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
LD + ++ + V + + IL T ME + D++ I +GS G EL+
Sbjct: 172 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 229
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 380 KQAGKYSGGMKRRLSVAISL--IGNPKVVY-MDEPSTGLDPASRNNLW-NVVKRAKQGRA 435
+ A + SGG +R+ +A L G VY +DEP+TGL PA L +VK G
Sbjct: 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785
Query: 436 IILTTHSME 444
+I H M+
Sbjct: 786 VIAVEHKMQ 794
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 379 DKQAGKYSGGMKRRLSVAISLIGNP-KVVY-MDEPSTGLDPASRNNLWNVVKRAKQ-GRA 435
D+ S G +RL +A L N VVY +DEPS GL PA L + ++ K+ G +
Sbjct: 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433
Query: 436 IILTTHSME 444
+ + H ++
Sbjct: 434 LFVVEHDLD 442
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
GNP + ++L + GE + G G+GKT+ + +++G + G G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 99
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLKGPALTQAVEESLKSVN-- 371
+ C Q + T +E+++ Y +K L Q + + + N
Sbjct: 100 -----RVSFCSQFSWIMPG-TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRA 430
L GGV SGG + R+S+A ++ + + +D P LD + ++ + V +
Sbjct: 154 LGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ IL T ME D++ I GS G EL++
Sbjct: 208 MANKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 32/222 (14%)
Query: 260 GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM 319
GNP + ++L + GE + G G+GKT+ + +++G + G G
Sbjct: 50 GNP---VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 99
Query: 320 DRIYTSMGVCPQEDLLWETLTGREHLLF------YGRLKNLKGPALTQAVEESLKSVN-- 371
+ C Q + T +E+++ Y +K L Q + + + N
Sbjct: 100 -----RVSFCSQFSWIMPG-TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 153
Query: 372 LFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NVVKRA 430
L GGV SGG + R+S+A ++ + + +D P LD + ++ + V +
Sbjct: 154 LGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL 207
Query: 431 KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472
+ IL T ME D++ I GS G EL++
Sbjct: 208 MANKTRILVTSKMEHLRK-ADKILILHQGSSYFYGTFSELQS 248
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 41/242 (16%)
Query: 248 SDNLRKIYPGRD----------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
++N RK G D G P + ++ + G+ + G GAGKT+ + M+
Sbjct: 28 NNNNRKTSNGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTGREHLLFYGRLK 352
+G + G G + C Q + E + G + + R
Sbjct: 85 MGELEPSEGKIKHSG------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYR-S 131
Query: 353 NLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE 410
+K L + + + + N+ GG+ SGG + R+S+A ++ + + +D
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLDS 185
Query: 411 PSTGLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
P LD + ++ + V + + IL T ME + D++ I +GS G E
Sbjct: 186 PFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSE 244
Query: 470 LK 471
L+
Sbjct: 245 LQ 246
>pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
++N + VAD Y GGMK I LIGNP+ Y ++P
Sbjct: 136 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDP 178
>pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
++N + VAD Y GGMK I LIGNP+ Y ++P
Sbjct: 137 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDP 179
>pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411
++N + VAD Y GGMK I LIGNP+ Y ++P
Sbjct: 137 TINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDP 179
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 95/242 (39%), Gaps = 41/242 (16%)
Query: 248 SDNLRKIYPGRD----------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
++N RK G D G P + ++ + G+ + G GAGKT+ + M+
Sbjct: 28 NNNNRKTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTGREHLLFYGRLK 352
+G + G G + C Q + E + G + + R
Sbjct: 85 MGELEPSEGKIKHSG------------RISFCSQNSWIMPGTIKENIIGVSYDEYRYR-S 131
Query: 353 NLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE 410
+K L + + + + N+ GG+ SGG + R+S+A ++ + + +D
Sbjct: 132 VIKACQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLDS 185
Query: 411 PSTGLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469
P LD + ++ + V + + IL T ME + D++ I +GS G E
Sbjct: 186 PFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSE 244
Query: 470 LK 471
L+
Sbjct: 245 LQ 246
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 96/238 (40%), Gaps = 32/238 (13%)
Query: 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301
T+ ++ +N+ + G P + ++ + G+ + G GAGKT+ + M++G
Sbjct: 3 TTTEVVMENVTAFWE-EGGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 302 RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-----EDLLWETLTGREHLLFYGRLKNLKG 356
+ G G + C Q + E + G + + R +K
Sbjct: 59 EPSEGKIKHSG------------RISFCSQFSWIMPGTIKENIIGVSYDEYRYR-SVIKA 105
Query: 357 PALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414
L + + + + N+ GG+ SGG + R+S+A ++ + + +D P
Sbjct: 106 CQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLDSPFGY 159
Query: 415 LDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471
LD + ++ + V + + IL T ME + D++ I +GS G EL+
Sbjct: 160 LDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQ 216
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 42/243 (17%)
Query: 248 SDNLRKIYPGRD----------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
++N RK G D G P + ++ + G+ + G GAGKT+ + M+
Sbjct: 28 NNNNRKTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF------YGRL 351
+G + G G + C Q + T +E+++ Y
Sbjct: 85 MGELEPSEGKIKHSG------------RISFCSQFSWIMPG-TIKENIIAGVSYDEYRYR 131
Query: 352 KNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409
+K L + + + + N+ GG+ SGG + R+S+A ++ + + +D
Sbjct: 132 SVIKACQLEEDISKFAEKDNIVLGEGGIT------LSGGQRARISLARAVYKDADLYLLD 185
Query: 410 EPSTGLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468
P LD + ++ + V + + IL T ME + D++ I +GS G
Sbjct: 186 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFS 244
Query: 469 ELK 471
EL+
Sbjct: 245 ELQ 247
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 42/243 (17%)
Query: 248 SDNLRKIYPGRD----------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM 297
++N RK G D G P + ++ + G+ + G GAGKT+ + M+
Sbjct: 28 NNNNRKTSNGDDSLSFSNLSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 84
Query: 298 IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF------YGRL 351
+G + G G + C Q + T +E+++F Y
Sbjct: 85 MGELEPSEGKIKHSG------------RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYR 131
Query: 352 KNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409
+K L + + + + N+ GG+ S G + ++S+A ++ + + +D
Sbjct: 132 SVIKACQLEEDISKFAEKDNIVLGEGGIT------LSEGQQAKISLARAVYKDADLYLLD 185
Query: 410 EPSTGLDPASRNNLW-NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468
P LD + ++ + V + + IL T ME + D++ I +GS G
Sbjct: 186 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFS 244
Query: 469 ELK 471
EL+
Sbjct: 245 ELQ 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,379,826
Number of Sequences: 62578
Number of extensions: 674105
Number of successful extensions: 1775
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 134
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)