Query 008362
Match_columns 568
No_of_seqs 487 out of 3458
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 22:52:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 3.2E-92 7E-97 849.6 61.3 542 1-562 685-1281(2272)
2 TIGR01257 rim_protein retinal- 100.0 1.9E-81 4.2E-86 756.4 58.6 526 2-568 1713-2259(2272)
3 KOG0059 Lipid exporter ABCA1 a 100.0 1.3E-82 2.8E-87 737.3 37.7 537 2-566 331-883 (885)
4 COG1126 GlnQ ABC-type polar am 100.0 1.1E-59 2.3E-64 445.8 25.4 221 245-473 2-226 (240)
5 COG4152 ABC-type uncharacteriz 100.0 6.4E-59 1.4E-63 446.0 27.5 295 245-561 2-298 (300)
6 COG1125 OpuBA ABC-type proline 100.0 8.7E-60 1.9E-64 454.7 21.5 225 245-475 1-228 (309)
7 COG1131 CcmA ABC-type multidru 100.0 4.9E-58 1.1E-62 470.6 34.8 287 245-559 4-292 (293)
8 PRK13537 nodulation ABC transp 100.0 2.3E-57 5.1E-62 469.2 39.2 298 243-561 5-303 (306)
9 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-59 2.5E-64 439.7 18.4 224 245-475 1-225 (245)
10 COG1135 AbcC ABC-type metal io 100.0 5.2E-58 1.1E-62 454.7 23.5 226 245-473 1-232 (339)
11 TIGR03522 GldA_ABC_ATP gliding 100.0 8.2E-56 1.8E-60 457.0 39.8 298 245-557 2-300 (301)
12 PRK13536 nodulation factor exp 100.0 8.4E-56 1.8E-60 462.9 39.1 297 244-561 40-337 (340)
13 TIGR01188 drrA daunorubicin re 100.0 6.8E-56 1.5E-60 457.9 37.4 290 264-558 6-301 (302)
14 TIGR01288 nodI ATP-binding ABC 100.0 4.1E-54 8.9E-59 444.8 38.5 297 244-561 3-300 (303)
15 COG1127 Ttg2A ABC-type transpo 100.0 2E-55 4.2E-60 422.8 23.7 223 243-472 6-235 (263)
16 COG3839 MalK ABC-type sugar tr 100.0 5.7E-54 1.2E-58 440.6 24.4 225 244-477 2-228 (338)
17 COG3842 PotA ABC-type spermidi 100.0 5E-54 1.1E-58 443.3 21.9 222 244-474 4-228 (352)
18 COG1137 YhbG ABC-type (unclass 100.0 1.8E-54 4E-59 404.3 14.9 222 244-473 3-229 (243)
19 COG1116 TauB ABC-type nitrate/ 100.0 3.3E-53 7.3E-58 412.7 23.8 204 244-459 2-207 (248)
20 TIGR02314 ABC_MetN D-methionin 100.0 2.8E-52 6E-57 435.9 28.8 224 245-472 1-230 (343)
21 COG3638 ABC-type phosphate/pho 100.0 1.5E-52 3.3E-57 401.8 22.5 222 244-472 2-237 (258)
22 COG1120 FepC ABC-type cobalami 100.0 1.7E-52 3.7E-57 414.8 23.6 218 245-470 2-226 (258)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.6E-52 3.4E-57 414.7 20.9 228 245-481 2-236 (345)
24 COG1117 PstB ABC-type phosphat 100.0 1.8E-52 4E-57 394.9 20.1 223 244-473 6-238 (253)
25 PRK11432 fbpC ferric transport 100.0 1.3E-51 2.8E-56 432.8 28.8 222 243-473 4-227 (351)
26 TIGR03265 PhnT2 putative 2-ami 100.0 1.8E-51 3.9E-56 432.3 29.4 221 244-473 3-225 (353)
27 COG2884 FtsE Predicted ATPase 100.0 2.8E-52 6.1E-57 387.0 19.9 215 245-466 1-220 (223)
28 PRK11650 ugpC glycerol-3-phosp 100.0 2E-51 4.3E-56 432.4 28.6 221 245-473 3-225 (356)
29 COG1136 SalX ABC-type antimicr 100.0 2.2E-51 4.8E-56 399.5 26.7 213 245-461 1-220 (226)
30 COG1124 DppF ABC-type dipeptid 100.0 4.5E-52 9.8E-57 401.3 21.6 227 244-475 2-234 (252)
31 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1E-51 2.3E-56 407.3 24.1 217 244-472 3-227 (254)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 3.6E-51 7.7E-56 430.8 28.3 221 245-474 5-230 (362)
33 cd03265 ABC_DrrA DrrA is the A 100.0 4.5E-51 9.7E-56 403.1 26.7 217 246-470 1-219 (220)
34 cd03261 ABC_Org_Solvent_Resist 100.0 5.2E-51 1.1E-55 406.6 27.3 219 246-472 1-226 (235)
35 COG1122 CbiO ABC-type cobalt t 100.0 3.9E-51 8.4E-56 404.4 25.3 222 244-473 2-229 (235)
36 COG0411 LivG ABC-type branched 100.0 8.4E-52 1.8E-56 399.8 19.9 222 244-473 3-240 (250)
37 cd03263 ABC_subfamily_A The AB 100.0 1.5E-50 3.3E-55 399.0 26.4 219 246-470 1-219 (220)
38 PRK11153 metN DL-methionine tr 100.0 1.9E-50 4.2E-55 423.8 28.5 225 245-473 1-231 (343)
39 PRK09452 potA putrescine/sperm 100.0 2.2E-50 4.7E-55 426.4 29.1 222 243-473 12-235 (375)
40 PRK10851 sulfate/thiosulfate t 100.0 2.2E-50 4.8E-55 424.1 28.3 220 245-473 2-227 (353)
41 PRK11607 potG putrescine trans 100.0 3.8E-50 8.2E-55 425.2 29.9 223 243-474 17-241 (377)
42 cd03266 ABC_NatA_sodium_export 100.0 2.5E-50 5.3E-55 397.0 26.4 217 245-465 1-218 (218)
43 COG4175 ProV ABC-type proline/ 100.0 3.1E-51 6.7E-56 405.8 19.7 234 244-479 3-261 (386)
44 TIGR00960 3a0501s02 Type II (G 100.0 2.9E-50 6.3E-55 396.1 25.8 211 245-461 1-216 (216)
45 cd03259 ABC_Carb_Solutes_like 100.0 2.6E-50 5.6E-55 395.6 25.0 211 246-465 1-213 (213)
46 PRK11000 maltose/maltodextrin 100.0 4.8E-50 1E-54 424.3 28.6 219 245-472 3-223 (369)
47 TIGR01186 proV glycine betaine 100.0 5.1E-50 1.1E-54 421.2 26.7 208 264-473 6-220 (363)
48 cd03258 ABC_MetN_methionine_tr 100.0 9.4E-50 2E-54 397.0 26.9 224 245-472 1-230 (233)
49 cd03218 ABC_YhbG The ABC trans 100.0 1E-49 2.2E-54 396.3 26.8 218 246-471 1-221 (232)
50 cd03296 ABC_CysA_sulfate_impor 100.0 9.2E-50 2E-54 398.7 26.6 219 245-472 2-226 (239)
51 PRK13637 cbiO cobalt transport 100.0 1.7E-49 3.6E-54 407.4 29.1 226 245-472 2-234 (287)
52 PRK09536 btuD corrinoid ABC tr 100.0 2E-49 4.4E-54 421.6 30.7 226 244-477 2-239 (402)
53 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-49 2.7E-54 396.8 26.6 219 246-472 1-232 (236)
54 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.3E-49 5.1E-54 395.1 28.4 221 245-474 1-223 (236)
55 PRK10070 glycine betaine trans 100.0 2E-49 4.4E-54 421.3 29.4 228 244-473 3-255 (400)
56 cd03264 ABC_drug_resistance_li 100.0 1.2E-49 2.7E-54 390.2 25.6 211 246-465 1-211 (211)
57 PRK15079 oligopeptide ABC tran 100.0 2.4E-49 5.1E-54 413.0 29.2 233 243-476 6-255 (331)
58 PRK13643 cbiO cobalt transport 100.0 3E-49 6.6E-54 405.6 29.2 225 245-472 1-233 (288)
59 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.9E-49 4.2E-54 391.5 26.2 214 246-467 1-218 (220)
60 TIGR00972 3a0107s01c2 phosphat 100.0 3.6E-49 7.8E-54 396.4 28.6 221 245-472 1-232 (247)
61 cd03260 ABC_PstB_phosphate_tra 100.0 1.5E-49 3.3E-54 393.9 25.4 215 246-469 1-226 (227)
62 cd03301 ABC_MalK_N The N-termi 100.0 1.7E-49 3.6E-54 389.8 25.1 211 246-465 1-213 (213)
63 PRK13647 cbiO cobalt transport 100.0 4.1E-49 8.8E-54 401.9 28.8 220 244-470 3-225 (274)
64 cd03256 ABC_PhnC_transporter A 100.0 2.8E-49 6E-54 395.3 27.0 220 246-472 1-234 (241)
65 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.3E-49 7.2E-54 395.4 27.4 222 246-472 1-225 (242)
66 PRK13634 cbiO cobalt transport 100.0 3.1E-49 6.6E-54 406.0 27.8 224 246-472 3-235 (290)
67 PRK09493 glnQ glutamine ABC tr 100.0 4.4E-49 9.5E-54 394.0 28.1 220 245-472 1-225 (240)
68 cd03269 ABC_putative_ATPase Th 100.0 3.1E-49 6.7E-54 387.1 25.8 209 246-465 1-210 (210)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.8E-49 3.8E-54 391.0 24.0 211 246-461 1-218 (218)
70 TIGR03411 urea_trans_UrtD urea 100.0 6.4E-49 1.4E-53 393.2 28.3 219 245-471 2-230 (242)
71 PRK13641 cbiO cobalt transport 100.0 6.7E-49 1.4E-53 403.0 28.9 225 245-472 2-234 (287)
72 TIGR02673 FtsE cell division A 100.0 4.1E-49 9E-54 387.2 25.4 209 245-460 1-214 (214)
73 cd03268 ABC_BcrA_bacitracin_re 100.0 4E-49 8.7E-54 385.8 25.1 207 246-465 1-208 (208)
74 PRK13650 cbiO cobalt transport 100.0 7.8E-49 1.7E-53 400.9 28.0 223 244-472 3-229 (279)
75 PRK13646 cbiO cobalt transport 100.0 9.4E-49 2E-53 401.7 28.7 225 245-472 2-235 (286)
76 PRK13631 cbiO cobalt transport 100.0 1.1E-48 2.5E-53 406.3 29.5 226 244-472 20-265 (320)
77 TIGR03415 ABC_choXWV_ATP choli 100.0 5.2E-49 1.1E-53 415.5 27.4 209 263-473 36-255 (382)
78 PRK11308 dppF dipeptide transp 100.0 8.9E-49 1.9E-53 408.3 28.7 234 244-478 4-250 (327)
79 PRK13651 cobalt transporter AT 100.0 7.8E-49 1.7E-53 405.1 27.9 225 245-472 2-254 (305)
80 cd03224 ABC_TM1139_LivF_branch 100.0 7E-49 1.5E-53 387.6 26.1 216 246-471 1-220 (222)
81 PRK11831 putative ABC transpor 100.0 1.3E-48 2.8E-53 397.3 28.5 221 244-472 6-233 (269)
82 PRK11264 putative amino-acid A 100.0 1.2E-48 2.7E-53 393.0 28.1 220 245-472 3-233 (250)
83 PRK13652 cbiO cobalt transport 100.0 1.9E-48 4.1E-53 397.7 28.9 222 244-472 2-227 (277)
84 PRK13636 cbiO cobalt transport 100.0 1.7E-48 3.6E-53 399.2 28.4 221 245-472 5-231 (283)
85 PRK11629 lolD lipoprotein tran 100.0 2.3E-48 5E-53 387.1 28.6 219 244-467 4-229 (233)
86 TIGR02315 ABC_phnC phosphonate 100.0 8.2E-49 1.8E-53 392.5 25.6 219 245-470 1-233 (243)
87 PRK10908 cell division protein 100.0 1.4E-48 3.1E-53 385.8 26.9 212 245-463 1-217 (222)
88 COG0410 LivF ABC-type branched 100.0 6.7E-49 1.4E-53 376.9 23.7 222 244-473 2-227 (237)
89 PRK13635 cbiO cobalt transport 100.0 1.6E-48 3.4E-53 398.6 27.9 222 244-472 4-229 (279)
90 PRK14268 phosphate ABC transpo 100.0 2.2E-48 4.8E-53 393.2 28.7 223 243-472 10-242 (258)
91 cd03294 ABC_Pro_Gly_Bertaine T 100.0 6.5E-49 1.4E-53 399.4 24.7 219 247-473 26-251 (269)
92 cd03292 ABC_FtsE_transporter F 100.0 1.2E-48 2.6E-53 383.8 25.5 209 246-461 1-214 (214)
93 PRK10895 lipopolysaccharide AB 100.0 1.6E-48 3.5E-53 390.1 26.8 219 245-471 3-225 (241)
94 PRK13644 cbiO cobalt transport 100.0 1.9E-48 4.2E-53 397.0 27.8 220 245-472 1-224 (274)
95 PRK14267 phosphate ABC transpo 100.0 2.9E-48 6.3E-53 391.1 28.6 223 244-472 3-237 (253)
96 PRK14247 phosphate ABC transpo 100.0 3.5E-48 7.6E-53 389.8 28.8 222 245-472 3-234 (250)
97 PRK14242 phosphate transporter 100.0 3.8E-48 8.1E-53 390.3 28.5 222 244-472 5-237 (253)
98 cd03225 ABC_cobalt_CbiO_domain 100.0 1.3E-48 2.8E-53 382.9 24.4 208 247-460 1-211 (211)
99 PRK13638 cbiO cobalt transport 100.0 2.7E-48 5.8E-53 395.4 27.5 220 245-472 1-225 (271)
100 PRK10619 histidine/lysine/argi 100.0 5.1E-48 1.1E-52 390.3 29.3 222 244-472 4-241 (257)
101 cd03226 ABC_cobalt_CbiO_domain 100.0 1.2E-48 2.5E-53 381.8 23.8 203 247-462 1-205 (205)
102 PRK14273 phosphate ABC transpo 100.0 3.8E-48 8.3E-53 390.5 28.0 223 244-473 6-239 (254)
103 PRK11022 dppD dipeptide transp 100.0 2.4E-48 5.3E-53 405.0 27.4 232 245-478 3-249 (326)
104 PRK13633 cobalt transporter AT 100.0 3.5E-48 7.6E-53 396.3 27.8 226 244-473 3-234 (280)
105 PRK13548 hmuV hemin importer A 100.0 5.6E-48 1.2E-52 390.3 28.5 220 245-472 2-230 (258)
106 PRK11124 artP arginine transpo 100.0 6E-48 1.3E-52 386.3 27.9 219 245-471 2-229 (242)
107 cd03257 ABC_NikE_OppD_transpor 100.0 4.1E-48 9E-53 383.5 26.2 218 245-465 1-228 (228)
108 cd03262 ABC_HisP_GlnQ_permease 100.0 3.2E-48 7E-53 380.5 25.0 208 246-461 1-213 (213)
109 PRK13649 cbiO cobalt transport 100.0 7.6E-48 1.7E-52 393.8 28.7 225 245-472 2-234 (280)
110 PRK11248 tauB taurine transpor 100.0 4.5E-48 9.8E-53 390.2 26.6 212 245-468 1-216 (255)
111 PRK13639 cbiO cobalt transport 100.0 8.1E-48 1.8E-52 392.6 28.6 220 245-472 1-226 (275)
112 PRK11614 livF leucine/isoleuci 100.0 5.4E-48 1.2E-52 385.4 26.2 219 244-472 4-226 (237)
113 PRK10744 pstB phosphate transp 100.0 1.1E-47 2.4E-52 388.5 28.7 223 243-472 11-244 (260)
114 PRK11300 livG leucine/isoleuci 100.0 7.9E-48 1.7E-52 388.2 27.5 221 244-472 4-243 (255)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 7.2E-48 1.6E-52 380.3 26.2 212 246-462 2-220 (221)
116 PRK09473 oppD oligopeptide tra 100.0 9.3E-48 2E-52 401.1 28.3 234 243-478 10-257 (330)
117 PRK14274 phosphate ABC transpo 100.0 1.4E-47 3.1E-52 387.5 28.8 224 243-473 10-244 (259)
118 PRK13632 cbiO cobalt transport 100.0 8.2E-48 1.8E-52 391.8 27.1 222 244-472 6-231 (271)
119 PRK14235 phosphate transporter 100.0 1.7E-47 3.6E-52 388.7 28.9 223 243-472 17-251 (267)
120 PRK15112 antimicrobial peptide 100.0 1.2E-47 2.5E-52 389.9 27.2 228 244-472 3-239 (267)
121 PRK14256 phosphate ABC transpo 100.0 2.1E-47 4.4E-52 384.7 28.5 223 244-472 3-236 (252)
122 cd03267 ABC_NatA_like Similar 100.0 7.4E-48 1.6E-52 384.4 25.0 201 263-465 33-236 (236)
123 PRK10575 iron-hydroxamate tran 100.0 1.3E-47 2.8E-52 389.1 27.2 220 244-471 10-236 (265)
124 PRK14245 phosphate ABC transpo 100.0 2.5E-47 5.4E-52 383.7 29.0 222 244-472 2-234 (250)
125 TIGR03410 urea_trans_UrtE urea 100.0 8.3E-48 1.8E-52 382.2 25.2 214 246-470 1-219 (230)
126 PRK14270 phosphate ABC transpo 100.0 2.2E-47 4.7E-52 384.3 28.5 223 243-472 2-235 (251)
127 COG4586 ABC-type uncharacteriz 100.0 1.9E-48 4.2E-53 379.3 20.0 303 245-560 3-323 (325)
128 PRK11231 fecE iron-dicitrate t 100.0 1.3E-47 2.8E-52 386.9 26.7 219 245-471 2-226 (255)
129 PRK10584 putative ABC transpor 100.0 1.7E-47 3.7E-52 379.5 27.1 216 244-464 5-227 (228)
130 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-47 3.3E-52 385.7 27.1 219 246-472 1-236 (252)
131 PRK14241 phosphate transporter 100.0 2.5E-47 5.4E-52 385.5 28.7 222 245-472 4-242 (258)
132 PRK14269 phosphate ABC transpo 100.0 2.5E-47 5.4E-52 382.8 28.2 221 245-472 2-230 (246)
133 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-47 2.3E-52 376.5 24.8 209 246-465 1-211 (211)
134 PRK13648 cbiO cobalt transport 100.0 2.2E-47 4.7E-52 388.3 27.9 222 244-472 6-231 (269)
135 PRK14248 phosphate ABC transpo 100.0 3.5E-47 7.7E-52 386.5 29.4 223 243-472 19-252 (268)
136 PRK13645 cbiO cobalt transport 100.0 1.9E-47 4.2E-52 392.6 27.8 225 245-472 6-240 (289)
137 PRK14259 phosphate ABC transpo 100.0 2.5E-47 5.4E-52 387.8 28.2 221 244-472 12-253 (269)
138 PRK14250 phosphate ABC transpo 100.0 1.4E-47 3.1E-52 383.4 25.9 216 245-472 3-221 (241)
139 PRK13640 cbiO cobalt transport 100.0 2.2E-47 4.8E-52 390.8 27.5 222 244-472 4-232 (282)
140 PRK15093 antimicrobial peptide 100.0 2.4E-47 5.1E-52 398.6 28.3 230 245-476 3-252 (330)
141 TIGR02769 nickel_nikE nickel i 100.0 2.4E-47 5.1E-52 387.2 27.4 227 245-472 2-240 (265)
142 cd03300 ABC_PotA_N PotA is an 100.0 2.5E-47 5.5E-52 379.5 27.0 218 246-472 1-220 (232)
143 cd03299 ABC_ModC_like Archeal 100.0 2.9E-47 6.4E-52 379.8 27.3 217 246-472 1-219 (235)
144 cd03235 ABC_Metallic_Cations A 100.0 7E-48 1.5E-52 378.4 22.5 206 247-465 1-213 (213)
145 TIGR03873 F420-0_ABC_ATP propo 100.0 2.6E-47 5.7E-52 384.9 27.2 218 246-471 2-225 (256)
146 PRK10253 iron-enterobactin tra 100.0 2.9E-47 6.3E-52 386.5 27.2 220 244-471 6-232 (265)
147 TIGR01978 sufC FeS assembly AT 100.0 2.8E-47 6.1E-52 381.3 26.6 220 246-472 1-234 (243)
148 PRK13642 cbiO cobalt transport 100.0 4.1E-47 8.9E-52 387.8 28.1 223 245-473 4-230 (277)
149 PRK14240 phosphate transporter 100.0 5.8E-47 1.2E-51 381.0 28.4 221 245-472 3-234 (250)
150 PRK14239 phosphate transporter 100.0 6E-47 1.3E-51 381.2 28.6 222 244-472 4-236 (252)
151 TIGR00968 3a0106s01 sulfate AB 100.0 3.9E-47 8.4E-52 379.4 26.9 218 246-472 1-220 (237)
152 PRK10771 thiQ thiamine transpo 100.0 3.4E-47 7.4E-52 378.5 26.3 217 245-472 1-219 (232)
153 PRK14262 phosphate ABC transpo 100.0 6E-47 1.3E-51 380.8 28.4 221 245-472 3-234 (250)
154 PRK11247 ssuB aliphatic sulfon 100.0 3.4E-47 7.3E-52 384.0 26.4 207 244-468 11-219 (257)
155 PRK11144 modC molybdate transp 100.0 3.7E-47 8.1E-52 400.3 27.3 213 245-474 1-220 (352)
156 PRK09984 phosphonate/organopho 100.0 4.6E-47 9.9E-52 384.4 26.9 219 244-470 3-240 (262)
157 PRK14237 phosphate transporter 100.0 1E-46 2.2E-51 382.9 29.4 224 242-472 17-251 (267)
158 PRK14251 phosphate ABC transpo 100.0 8.9E-47 1.9E-51 379.8 28.1 222 244-472 3-235 (251)
159 PRK14249 phosphate ABC transpo 100.0 1.1E-46 2.5E-51 379.1 28.7 223 244-473 3-236 (251)
160 TIGR03740 galliderm_ABC gallid 100.0 6.2E-47 1.3E-51 374.3 26.2 209 246-469 1-210 (223)
161 TIGR02142 modC_ABC molybdenum 100.0 6.2E-47 1.3E-51 399.0 27.2 213 250-474 4-223 (354)
162 TIGR01277 thiQ thiamine ABC tr 100.0 6.5E-47 1.4E-51 371.7 25.5 210 246-466 1-212 (213)
163 PRK14261 phosphate ABC transpo 100.0 1.2E-46 2.6E-51 379.4 28.0 223 243-472 4-237 (253)
164 PRK14253 phosphate ABC transpo 100.0 1.2E-46 2.7E-51 378.4 27.9 221 245-472 3-233 (249)
165 cd03297 ABC_ModC_molybdenum_tr 100.0 6.6E-47 1.4E-51 371.8 25.1 204 249-465 4-214 (214)
166 PRK14272 phosphate ABC transpo 100.0 1.7E-46 3.6E-51 377.9 28.3 222 245-472 4-236 (252)
167 PRK11701 phnK phosphonate C-P 100.0 1.3E-46 2.9E-51 380.1 27.6 222 244-472 5-241 (258)
168 COG0444 DppD ABC-type dipeptid 100.0 5E-47 1.1E-51 381.3 24.1 232 246-479 2-250 (316)
169 PRK14236 phosphate transporter 100.0 2E-46 4.3E-51 381.8 28.7 223 243-472 23-256 (272)
170 COG3840 ThiQ ABC-type thiamine 100.0 2.2E-47 4.8E-52 351.7 19.5 217 245-473 1-220 (231)
171 PRK14254 phosphate ABC transpo 100.0 3.4E-46 7.4E-51 382.4 29.1 222 243-472 37-269 (285)
172 PRK14275 phosphate ABC transpo 100.0 3.1E-46 6.7E-51 383.0 28.7 224 243-473 37-271 (286)
173 PRK14238 phosphate transporter 100.0 3.3E-46 7.2E-51 380.0 28.5 223 243-472 22-255 (271)
174 cd03251 ABCC_MsbA MsbA is an e 100.0 1.6E-46 3.5E-51 373.8 25.3 220 246-475 1-228 (234)
175 PRK14244 phosphate ABC transpo 100.0 3E-46 6.5E-51 376.1 27.2 220 246-472 6-237 (251)
176 PRK14260 phosphate ABC transpo 100.0 3.6E-46 7.7E-51 377.3 27.8 222 244-472 6-243 (259)
177 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-46 2.4E-51 375.9 23.7 218 246-473 1-226 (237)
178 PRK14243 phosphate transporter 100.0 3.4E-46 7.4E-51 378.5 27.4 222 243-472 8-248 (264)
179 PRK14255 phosphate ABC transpo 100.0 6.2E-46 1.3E-50 373.9 28.8 222 244-472 4-236 (252)
180 PRK14246 phosphate ABC transpo 100.0 5.3E-46 1.1E-50 375.6 27.9 225 243-473 8-242 (257)
181 PRK10762 D-ribose transporter 100.0 1.7E-46 3.8E-51 413.6 26.5 219 244-470 3-228 (501)
182 PRK13549 xylose transporter AT 100.0 2.5E-46 5.4E-51 412.8 26.5 219 244-470 4-230 (506)
183 PRK14271 phosphate ABC transpo 100.0 1E-45 2.2E-50 377.2 29.0 222 244-472 20-251 (276)
184 PRK13547 hmuV hemin importer A 100.0 5.1E-46 1.1E-50 378.4 26.5 219 245-471 1-243 (272)
185 PRK10261 glutathione transport 100.0 5.3E-46 1.2E-50 418.9 29.4 230 243-473 311-554 (623)
186 COG4598 HisP ABC-type histidin 100.0 2.9E-47 6.3E-52 349.9 15.5 222 244-473 5-242 (256)
187 PRK14263 phosphate ABC transpo 100.0 1.1E-45 2.5E-50 374.0 28.9 221 244-472 7-245 (261)
188 cd03254 ABCC_Glucan_exporter_l 100.0 4.7E-46 1E-50 369.3 25.2 219 245-474 2-228 (229)
189 PRK14258 phosphate ABC transpo 100.0 1.2E-45 2.6E-50 373.9 28.5 222 244-472 6-245 (261)
190 TIGR00956 3a01205 Pleiotropic 100.0 2.5E-44 5.5E-49 433.8 44.8 217 244-467 758-988 (1394)
191 TIGR02323 CP_lyasePhnK phospho 100.0 8.3E-46 1.8E-50 373.2 26.8 222 244-472 2-238 (253)
192 TIGR03608 L_ocin_972_ABC putat 100.0 3.4E-46 7.4E-51 364.3 23.2 200 248-456 1-206 (206)
193 PRK09700 D-allose transporter 100.0 4.7E-46 1E-50 411.0 27.1 219 244-470 4-232 (510)
194 COG1123 ATPase components of v 100.0 3.1E-46 6.6E-51 400.6 24.7 236 242-478 277-525 (539)
195 cd03234 ABCG_White The White s 100.0 7.1E-46 1.5E-50 367.6 25.5 215 245-465 3-226 (226)
196 PRK10418 nikD nickel transport 100.0 1E-45 2.2E-50 372.9 27.1 218 245-472 4-230 (254)
197 PRK14265 phosphate ABC transpo 100.0 1.6E-45 3.4E-50 375.5 28.6 222 243-472 18-258 (274)
198 PRK15439 autoinducer 2 ABC tra 100.0 8.6E-46 1.9E-50 408.7 28.6 215 244-470 10-227 (510)
199 PRK14266 phosphate ABC transpo 100.0 1.6E-45 3.4E-50 370.5 27.7 222 245-473 3-235 (250)
200 PRK14257 phosphate ABC transpo 100.0 2.2E-45 4.8E-50 382.9 29.7 225 243-472 78-313 (329)
201 TIGR02770 nickel_nikD nickel i 100.0 7.8E-46 1.7E-50 368.3 24.4 206 266-472 1-215 (230)
202 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.4E-46 2E-50 369.4 24.8 220 246-474 1-228 (238)
203 PRK10419 nikE nickel transport 100.0 2E-45 4.3E-50 373.7 27.3 227 245-472 3-241 (268)
204 PRK13538 cytochrome c biogenes 100.0 1E-45 2.2E-50 360.9 24.0 201 245-456 1-202 (204)
205 PRK10247 putative ABC transpor 100.0 9.4E-46 2E-50 366.6 24.0 212 244-466 6-221 (225)
206 PRK14252 phosphate ABC transpo 100.0 3.3E-45 7.2E-50 371.5 28.3 223 243-472 14-249 (265)
207 PRK10261 glutathione transport 100.0 1.5E-45 3.3E-50 415.2 28.2 228 243-472 10-258 (623)
208 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-45 3.9E-50 363.2 25.3 211 246-461 2-219 (220)
209 COG1123 ATPase components of v 100.0 1.9E-45 4.2E-50 394.4 27.0 237 244-482 4-254 (539)
210 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-45 2.6E-50 364.2 23.4 206 246-465 3-220 (220)
211 CHL00131 ycf16 sulfate ABC tra 100.0 5.6E-45 1.2E-49 366.8 28.2 220 244-470 6-239 (252)
212 TIGR01184 ntrCD nitrate transp 100.0 1.2E-45 2.6E-50 367.0 22.8 198 267-470 1-202 (230)
213 PRK14264 phosphate ABC transpo 100.0 9.6E-45 2.1E-49 375.2 29.1 224 242-472 42-289 (305)
214 PRK13543 cytochrome c biogenes 100.0 5.3E-45 1.1E-49 358.5 25.4 202 244-458 10-212 (214)
215 PRK15056 manganese/iron transp 100.0 5.7E-45 1.2E-49 371.1 26.4 218 244-471 5-229 (272)
216 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.6E-45 7.8E-50 372.2 24.5 213 245-473 2-226 (275)
217 PRK03695 vitamin B12-transport 100.0 4.3E-45 9.2E-50 367.2 24.7 211 247-471 2-221 (248)
218 PRK11288 araG L-arabinose tran 100.0 5.6E-45 1.2E-49 401.6 27.6 216 244-467 3-224 (501)
219 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.3E-45 1.6E-49 360.0 25.5 201 246-465 23-224 (224)
220 TIGR02324 CP_lyasePhnL phospho 100.0 6.5E-45 1.4E-49 360.0 25.1 211 245-456 1-222 (224)
221 TIGR03269 met_CoM_red_A2 methy 100.0 7.8E-45 1.7E-49 402.3 28.6 229 243-473 277-518 (520)
222 cd03253 ABCC_ATM1_transporter 100.0 8E-45 1.7E-49 362.1 25.8 216 246-472 1-224 (236)
223 TIGR03269 met_CoM_red_A2 methy 100.0 5E-45 1.1E-49 403.8 26.6 221 246-474 1-260 (520)
224 TIGR02633 xylG D-xylose ABC tr 100.0 6.4E-45 1.4E-49 401.2 26.8 217 246-469 2-227 (500)
225 PRK10982 galactose/methyl gala 100.0 4.9E-45 1.1E-49 401.2 25.6 215 248-470 1-221 (491)
226 COG1129 MglA ABC-type sugar tr 100.0 7.1E-45 1.5E-49 387.7 25.8 217 243-467 6-229 (500)
227 cd03244 ABCC_MRP_domain2 Domai 100.0 5.7E-45 1.2E-49 359.6 23.0 208 246-466 3-220 (221)
228 cd03233 ABC_PDR_domain1 The pl 100.0 1.2E-44 2.6E-49 353.0 24.5 194 245-465 3-202 (202)
229 cd03231 ABC_CcmA_heme_exporter 100.0 6.9E-45 1.5E-49 354.3 22.7 197 246-456 1-198 (201)
230 PRK13546 teichoic acids export 100.0 3.4E-44 7.5E-49 363.4 28.7 217 245-475 4-235 (264)
231 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.4E-44 3E-49 353.5 24.9 202 244-467 5-207 (207)
232 COG4181 Predicted ABC-type tra 100.0 3.5E-45 7.6E-50 333.9 19.1 215 244-463 5-226 (228)
233 COG4525 TauB ABC-type taurine 100.0 4.4E-45 9.5E-50 339.8 20.0 222 245-477 3-228 (259)
234 PRK15134 microcin C ABC transp 100.0 7E-45 1.5E-49 403.4 25.3 228 243-472 273-515 (529)
235 PRK09580 sufC cysteine desulfu 100.0 2.7E-44 5.9E-49 360.9 26.9 220 245-471 1-234 (248)
236 cd03248 ABCC_TAP TAP, the Tran 100.0 5.2E-45 1.1E-49 361.2 21.3 210 243-461 9-226 (226)
237 PRK13549 xylose transporter AT 100.0 8.8E-45 1.9E-49 400.5 25.2 224 243-470 257-492 (506)
238 PRK15134 microcin C ABC transp 100.0 1.9E-44 4.1E-49 399.9 27.7 227 244-472 4-246 (529)
239 PLN03140 ABC transporter G fam 100.0 5.8E-43 1.3E-47 421.0 42.0 227 245-475 867-1117(1470)
240 PRK09544 znuC high-affinity zi 100.0 3.3E-44 7.1E-49 361.2 25.0 202 244-471 3-208 (251)
241 cd03213 ABCG_EPDR ABCG transpo 100.0 3.9E-44 8.5E-49 347.1 24.6 188 245-465 3-194 (194)
242 cd03247 ABCC_cytochrome_bd The 100.0 2.5E-44 5.5E-49 343.6 22.6 178 246-465 1-178 (178)
243 COG2274 SunT ABC-type bacterio 100.0 7.8E-45 1.7E-49 408.1 22.0 218 244-473 470-697 (709)
244 PRK09700 D-allose transporter 100.0 2.6E-44 5.6E-49 397.2 25.4 215 244-467 264-493 (510)
245 cd03230 ABC_DR_subfamily_A Thi 100.0 3.8E-44 8.3E-49 340.9 23.1 172 246-461 1-173 (173)
246 PRK13539 cytochrome c biogenes 100.0 3.1E-44 6.6E-49 351.3 23.0 198 245-458 2-200 (207)
247 cd03288 ABCC_SUR2 The SUR doma 100.0 4.9E-44 1.1E-48 361.3 25.2 219 244-473 18-244 (257)
248 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-44 4.9E-49 396.8 24.3 221 244-468 256-488 (500)
249 TIGR01189 ccmA heme ABC export 100.0 3.8E-44 8.2E-49 348.1 22.1 196 246-455 1-197 (198)
250 cd03229 ABC_Class3 This class 100.0 4.1E-44 8.8E-49 342.3 21.8 173 246-460 1-178 (178)
251 PRK10938 putative molybdenum t 100.0 3.9E-44 8.5E-49 394.0 24.4 211 245-471 3-223 (490)
252 cd03215 ABC_Carb_Monos_II This 100.0 7.2E-44 1.6E-48 341.8 23.1 174 244-461 3-182 (182)
253 COG3845 ABC-type uncharacteriz 100.0 5E-44 1.1E-48 374.0 23.6 215 244-466 3-223 (501)
254 COG4161 ArtP ABC-type arginine 100.0 2.4E-44 5.1E-49 325.4 18.0 218 245-470 2-228 (242)
255 COG4604 CeuD ABC-type enteroch 100.0 3E-45 6.6E-50 341.5 12.4 220 245-472 1-225 (252)
256 PRK13545 tagH teichoic acids e 100.0 2.1E-43 4.5E-48 380.2 28.5 215 243-474 19-234 (549)
257 PRK11174 cysteine/glutathione 100.0 7.4E-44 1.6E-48 400.2 25.6 215 245-473 349-573 (588)
258 COG4674 Uncharacterized ABC-ty 100.0 2.1E-44 4.6E-49 335.3 17.5 222 244-473 4-236 (249)
259 PLN03211 ABC transporter G-25; 100.0 6.6E-44 1.4E-48 402.2 25.0 218 247-475 70-299 (659)
260 cd03232 ABC_PDR_domain2 The pl 100.0 2.1E-43 4.6E-48 341.4 23.9 185 245-465 3-192 (192)
261 KOG0058 Peptide exporter, ABC 100.0 6.2E-44 1.3E-48 387.9 22.3 223 244-475 464-694 (716)
262 PRK13540 cytochrome c biogenes 100.0 1.6E-43 3.5E-48 344.3 22.7 196 245-454 1-197 (200)
263 COG4988 CydD ABC-type transpor 100.0 8.8E-44 1.9E-48 380.2 22.5 216 246-474 321-545 (559)
264 cd03246 ABCC_Protease_Secretio 100.0 1.9E-43 4.2E-48 336.1 22.2 171 246-461 1-173 (173)
265 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.8E-43 6.1E-48 342.7 23.8 186 246-471 1-192 (200)
266 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.2E-43 4.7E-48 402.9 26.8 214 245-473 451-674 (686)
267 PRK11160 cysteine/glutathione 100.0 2.2E-43 4.7E-48 394.9 26.1 217 244-474 337-564 (574)
268 cd03214 ABC_Iron-Siderophores_ 100.0 9.8E-44 2.1E-48 340.2 20.0 177 247-465 1-180 (180)
269 TIGR01166 cbiO cobalt transpor 100.0 1.3E-43 2.7E-48 342.2 20.5 180 264-446 5-190 (190)
270 cd03228 ABCC_MRP_Like The MRP 100.0 2.4E-43 5.1E-48 334.8 21.4 170 246-460 1-171 (171)
271 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.2E-43 4.8E-48 404.4 25.2 217 244-474 476-702 (710)
272 PRK10762 D-ribose transporter 100.0 3E-43 6.6E-48 387.9 25.1 215 244-470 256-482 (501)
273 PRK11176 lipid transporter ATP 100.0 3.1E-43 6.7E-48 394.7 25.5 219 245-474 341-569 (582)
274 TIGR03375 type_I_sec_LssB type 100.0 3.9E-43 8.5E-48 401.3 26.3 220 244-475 462-691 (694)
275 COG4559 ABC-type hemin transpo 100.0 2.8E-43 6.2E-48 332.0 20.6 219 245-471 1-229 (259)
276 KOG0055 Multidrug/pheromone ex 100.0 1.5E-43 3.2E-48 404.3 21.7 221 244-475 349-579 (1228)
277 PRK10790 putative multidrug tr 100.0 5.6E-43 1.2E-47 393.3 25.9 216 244-473 339-564 (592)
278 PRK11288 araG L-arabinose tran 100.0 4.8E-43 1.1E-47 386.2 24.5 216 244-470 256-483 (501)
279 TIGR01187 potA spermidine/putr 100.0 4.9E-43 1.1E-47 365.3 23.1 189 282-473 1-191 (325)
280 TIGR00958 3a01208 Conjugate Tr 100.0 5.9E-43 1.3E-47 400.1 25.2 219 244-475 477-705 (711)
281 COG4987 CydC ABC-type transpor 100.0 9.8E-44 2.1E-48 374.3 16.8 218 245-474 336-563 (573)
282 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-42 2.6E-47 343.9 22.8 194 272-472 1-201 (223)
283 PRK15439 autoinducer 2 ABC tra 100.0 1.1E-42 2.5E-47 383.9 24.9 216 243-470 266-490 (510)
284 PRK10982 galactose/methyl gala 100.0 1.4E-42 3.1E-47 381.7 25.3 216 243-467 248-475 (491)
285 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-42 2.5E-47 398.2 25.1 218 244-474 472-699 (708)
286 COG1132 MdlB ABC-type multidru 100.0 1.7E-42 3.6E-47 387.5 25.5 218 245-473 328-553 (567)
287 TIGR01842 type_I_sec_PrtD type 100.0 3.7E-42 8E-47 382.9 28.1 220 244-473 315-543 (544)
288 COG4608 AppF ABC-type oligopep 100.0 6.3E-43 1.4E-47 344.8 18.9 199 244-479 3-206 (268)
289 TIGR01192 chvA glucan exporter 100.0 2.9E-42 6.3E-47 386.5 26.8 219 245-474 334-560 (585)
290 PRK15064 ABC transporter ATP-b 100.0 3.4E-42 7.3E-47 382.0 26.5 208 245-471 1-241 (530)
291 KOG0057 Mitochondrial Fe/S clu 100.0 1.2E-42 2.5E-47 366.4 21.1 215 244-472 350-574 (591)
292 cd03216 ABC_Carb_Monos_I This 100.0 4.4E-42 9.6E-47 323.7 22.9 159 246-463 1-162 (163)
293 TIGR01846 type_I_sec_HlyB type 100.0 2.8E-42 6E-47 394.2 25.7 219 244-474 454-682 (694)
294 PRK13657 cyclic beta-1,2-gluca 100.0 2.9E-42 6.2E-47 387.2 25.1 216 245-473 334-559 (588)
295 cd03250 ABCC_MRP_domain1 Domai 100.0 2.6E-42 5.7E-47 336.7 21.5 193 246-460 1-204 (204)
296 PRK10789 putative multidrug tr 100.0 4E-42 8.8E-47 384.4 25.7 218 245-474 313-540 (569)
297 PRK15064 ABC transporter ATP-b 100.0 6.4E-42 1.4E-46 379.8 26.3 207 244-474 318-527 (530)
298 PRK11819 putative ABC transpor 100.0 7E-42 1.5E-46 381.2 26.6 207 244-470 5-248 (556)
299 cd03290 ABCC_SUR1_N The SUR do 100.0 5.1E-42 1.1E-46 338.1 22.5 200 247-460 2-218 (218)
300 TIGR02204 MsbA_rel ABC transpo 100.0 5.3E-42 1.1E-46 384.3 25.1 219 244-473 336-564 (576)
301 PRK15177 Vi polysaccharide exp 100.0 4.8E-42 1E-46 337.3 21.7 193 265-474 1-194 (213)
302 PRK10535 macrolide transporter 100.0 1.8E-41 3.8E-46 383.6 29.2 223 244-471 3-231 (648)
303 COG4172 ABC-type uncharacteriz 100.0 9.6E-42 2.1E-46 347.0 23.0 234 243-478 274-522 (534)
304 PRK13541 cytochrome c biogenes 100.0 8.3E-42 1.8E-46 331.0 21.5 191 245-453 1-192 (195)
305 COG4148 ModC ABC-type molybdat 100.0 1.1E-42 2.5E-47 339.6 14.8 198 268-473 15-219 (352)
306 TIGR02203 MsbA_lipidA lipid A 100.0 6.8E-42 1.5E-46 383.0 23.2 218 245-473 330-557 (571)
307 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-41 2.7E-46 383.1 24.7 209 263-475 37-259 (617)
308 PRK10938 putative molybdenum t 100.0 1.2E-41 2.5E-46 374.4 23.0 216 243-465 258-485 (490)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.2E-41 9.1E-46 374.8 26.9 207 244-470 3-246 (552)
310 COG4619 ABC-type uncharacteriz 100.0 3E-42 6.4E-47 313.8 14.3 201 263-470 15-218 (223)
311 cd03223 ABCD_peroxisomal_ALDP 100.0 3.2E-41 6.9E-46 318.8 21.4 164 246-460 1-164 (166)
312 cd03291 ABCC_CFTR1 The CFTR su 100.0 8.1E-41 1.7E-45 341.5 26.0 202 242-472 36-247 (282)
313 PRK11819 putative ABC transpor 100.0 5.9E-41 1.3E-45 373.8 27.0 209 243-472 322-533 (556)
314 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.2E-41 9.2E-46 337.5 22.2 190 265-471 8-206 (246)
315 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-40 2.4E-45 371.5 26.6 209 243-472 320-531 (552)
316 KOG0055 Multidrug/pheromone ex 100.0 2E-41 4.4E-46 386.8 20.8 223 245-478 987-1219(1228)
317 PLN03232 ABC transporter C fam 100.0 4.5E-41 9.8E-46 409.1 25.0 218 245-475 1234-1461(1495)
318 COG1134 TagH ABC-type polysacc 100.0 1.5E-40 3.3E-45 322.0 23.3 199 263-475 39-239 (249)
319 PLN03130 ABC transporter C fam 100.0 7.4E-41 1.6E-45 407.8 26.0 218 244-474 1236-1463(1622)
320 PTZ00265 multidrug resistance 100.0 9.8E-41 2.1E-45 403.3 24.2 218 245-473 1165-1453(1466)
321 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.1E-40 2.3E-45 336.1 19.4 202 249-465 4-220 (255)
322 TIGR02857 CydD thiol reductant 100.0 1.7E-40 3.6E-45 368.6 22.8 200 245-456 320-529 (529)
323 PRK10636 putative ABC transpor 100.0 6.4E-40 1.4E-44 370.1 25.7 205 243-472 310-517 (638)
324 COG4172 ABC-type uncharacteriz 100.0 3.2E-40 6.8E-45 336.0 20.7 237 243-481 4-256 (534)
325 TIGR00957 MRP_assoc_pro multi 100.0 5.1E-40 1.1E-44 400.5 26.6 217 244-473 1283-1509(1522)
326 PTZ00243 ABC transporter; Prov 100.0 7.3E-40 1.6E-44 398.5 26.5 216 245-473 1308-1534(1560)
327 PRK13409 putative ATPase RIL; 100.0 1E-39 2.2E-44 364.1 24.3 197 243-466 338-536 (590)
328 TIGR02868 CydC thiol reductant 100.0 4.4E-40 9.5E-45 365.2 21.2 187 245-443 334-529 (529)
329 PRK10522 multidrug transporter 100.0 1.1E-39 2.4E-44 363.2 24.4 201 245-464 322-530 (547)
330 COG1101 PhnK ABC-type uncharac 100.0 5.7E-40 1.2E-44 310.3 18.3 221 245-466 1-232 (263)
331 PTZ00265 multidrug resistance 100.0 7.2E-40 1.6E-44 395.8 24.0 210 245-459 382-655 (1466)
332 COG4167 SapF ABC-type antimicr 100.0 6.6E-40 1.4E-44 302.1 18.0 228 245-473 4-240 (267)
333 PRK11147 ABC transporter ATPas 100.0 1.8E-39 4E-44 366.8 25.2 207 243-470 317-526 (635)
334 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.8E-39 3.9E-44 361.9 24.6 207 244-464 336-551 (555)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.7E-39 5.8E-44 298.5 20.3 144 246-460 1-144 (144)
336 PRK10636 putative ABC transpor 100.0 6.7E-39 1.4E-43 361.8 26.8 205 245-469 1-233 (638)
337 COG1119 ModF ABC-type molybden 100.0 1.3E-39 2.7E-44 315.2 17.7 217 242-466 28-256 (257)
338 TIGR00956 3a01205 Pleiotropic 100.0 4.1E-39 8.9E-44 388.7 24.2 211 263-475 73-303 (1394)
339 PLN03073 ABC transporter F fam 100.0 1.9E-38 4.1E-43 360.0 27.8 206 244-473 507-715 (718)
340 TIGR01271 CFTR_protein cystic 100.0 8.7E-39 1.9E-43 388.6 26.5 216 244-473 1216-1441(1490)
341 KOG0056 Heavy metal exporter H 100.0 1.4E-39 3.1E-44 336.4 13.6 224 244-478 536-767 (790)
342 PRK11147 ABC transporter ATPas 100.0 8E-38 1.7E-42 353.4 27.2 203 245-469 3-240 (635)
343 COG0396 sufC Cysteine desulfur 100.0 1.4E-37 3.1E-42 297.6 24.4 224 244-474 2-235 (251)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 2.9E-38 6.3E-43 300.8 19.1 146 249-462 4-151 (177)
345 KOG0061 Transporter, ABC super 100.0 3.7E-38 8E-43 352.3 22.9 226 245-475 25-263 (613)
346 PLN03140 ABC transporter G fam 100.0 1.6E-38 3.6E-43 382.6 21.0 209 263-475 177-430 (1470)
347 PRK13409 putative ATPase RIL; 100.0 2E-38 4.3E-43 353.7 18.8 193 250-459 78-287 (590)
348 TIGR00954 3a01203 Peroxysomal 100.0 7.9E-38 1.7E-42 354.3 23.1 193 244-457 450-652 (659)
349 COG4618 ArpD ABC-type protease 100.0 1.1E-37 2.4E-42 325.9 21.1 226 242-475 331-563 (580)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-37 4.9E-42 289.5 20.7 154 248-460 2-157 (157)
351 COG4107 PhnK ABC-type phosphon 100.0 1.5E-37 3.2E-42 284.6 14.6 225 243-478 4-247 (258)
352 cd03238 ABC_UvrA The excision 100.0 1E-36 2.2E-41 290.0 19.6 157 263-461 7-166 (176)
353 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-36 9.2E-41 366.2 24.8 208 245-473 636-851 (1522)
354 COG4133 CcmA ABC-type transpor 100.0 1.5E-36 3.3E-41 282.1 15.9 191 245-446 2-193 (209)
355 PLN03073 ABC transporter F fam 100.0 1.8E-36 4E-41 343.8 18.9 217 243-469 175-428 (718)
356 PLN03232 ABC transporter C fam 100.0 6.5E-36 1.4E-40 364.1 23.5 206 245-473 614-829 (1495)
357 TIGR01271 CFTR_protein cystic 100.0 8.5E-36 1.9E-40 362.6 23.9 193 264-473 439-637 (1490)
358 PLN03130 ABC transporter C fam 100.0 8.9E-36 1.9E-40 363.4 24.0 205 245-473 614-829 (1622)
359 COG0488 Uup ATPase components 100.0 1.7E-35 3.7E-40 323.0 22.4 201 244-465 2-232 (530)
360 KOG0065 Pleiotropic drug resis 100.0 1.6E-34 3.5E-39 330.0 26.6 220 244-469 786-1018(1391)
361 COG4136 ABC-type uncharacteriz 100.0 2.6E-35 5.6E-40 263.9 14.2 199 245-456 2-207 (213)
362 COG4778 PhnL ABC-type phosphon 100.0 2.6E-35 5.7E-40 268.9 13.5 214 244-458 3-227 (235)
363 COG5265 ATM1 ABC-type transpor 100.0 3E-35 6.6E-40 301.5 15.1 216 245-473 262-487 (497)
364 cd03270 ABC_UvrA_I The excisio 100.0 3.4E-34 7.3E-39 284.1 20.0 193 263-465 7-226 (226)
365 KOG0054 Multidrug resistance-a 100.0 2.6E-34 5.7E-39 335.6 21.4 221 243-476 1136-1366(1381)
366 PTZ00243 ABC transporter; Prov 100.0 6.1E-34 1.3E-38 346.8 23.0 190 264-472 673-870 (1560)
367 COG1129 MglA ABC-type sugar tr 100.0 1.9E-32 4.2E-37 292.5 23.0 213 243-467 261-485 (500)
368 COG0488 Uup ATPase components 100.0 2.5E-32 5.5E-37 298.2 23.0 205 243-472 319-525 (530)
369 PF00005 ABC_tran: ABC transpo 100.0 5.9E-33 1.3E-37 253.0 12.8 132 267-413 1-137 (137)
370 cd03271 ABC_UvrA_II The excisi 100.0 4.7E-32 1E-36 272.8 18.9 196 264-467 8-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 1.5E-32 3.3E-37 266.6 14.1 166 266-458 11-190 (197)
372 KOG0054 Multidrug resistance-a 100.0 1.4E-31 3.1E-36 312.7 23.4 208 242-473 515-732 (1381)
373 cd03274 ABC_SMC4_euk Eukaryoti 100.0 3.8E-33 8.2E-38 273.8 4.9 185 245-458 5-204 (212)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1E-31 2.2E-36 268.9 14.8 196 246-457 4-234 (243)
375 cd03273 ABC_SMC2_euk Eukaryoti 100.0 1.4E-30 3.1E-35 262.2 10.8 180 277-457 25-242 (251)
376 COG3845 ABC-type uncharacteriz 100.0 5.4E-29 1.2E-33 261.3 22.5 221 243-469 255-489 (501)
377 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.7E-30 5.8E-35 254.0 11.6 192 245-460 5-210 (213)
378 COG4138 BtuD ABC-type cobalami 100.0 2.4E-30 5.2E-35 237.4 7.6 209 245-471 3-220 (248)
379 cd03240 ABC_Rad50 The catalyti 100.0 1.2E-28 2.6E-33 240.6 11.9 164 271-459 17-198 (204)
380 PRK00349 uvrA excinuclease ABC 100.0 2.5E-27 5.4E-32 273.6 23.1 127 339-473 792-928 (943)
381 PRK00635 excinuclease ABC subu 100.0 3.8E-27 8.3E-32 282.4 23.7 213 245-472 600-906 (1809)
382 COG4615 PvdE ABC-type sideroph 99.9 5.6E-28 1.2E-32 245.9 10.9 204 244-465 321-530 (546)
383 COG4170 SapD ABC-type antimicr 99.9 1.8E-27 3.8E-32 224.3 11.5 233 245-479 3-255 (330)
384 KOG0927 Predicted transporter 99.9 3.8E-27 8.2E-32 248.4 15.1 220 242-469 72-306 (614)
385 KOG0927 Predicted transporter 99.9 1.8E-27 4E-32 250.8 11.8 207 243-472 387-596 (614)
386 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-26 2.7E-31 225.3 14.1 172 266-460 11-192 (198)
387 TIGR00630 uvra excinuclease AB 99.9 1.5E-25 3.3E-30 258.4 22.2 125 338-470 789-923 (924)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.9 9.6E-26 2.1E-30 226.6 11.0 195 246-458 4-233 (247)
389 COG1245 Predicted ATPase, RNas 99.9 4.9E-25 1.1E-29 228.1 16.3 188 244-457 341-530 (591)
390 COG4178 ABC-type uncharacteriz 99.9 1.7E-24 3.7E-29 235.9 18.4 190 243-455 390-585 (604)
391 KOG2355 Predicted ABC-type tra 99.9 2.8E-24 6E-29 202.2 16.3 212 243-471 11-236 (291)
392 KOG0062 ATPase component of AB 99.9 1.7E-24 3.8E-29 227.2 15.4 204 242-467 359-564 (582)
393 KOG0062 ATPase component of AB 99.9 1.8E-24 3.8E-29 227.2 10.1 201 244-469 79-282 (582)
394 KOG0065 Pleiotropic drug resis 99.9 4.1E-24 8.8E-29 245.3 13.6 210 263-476 127-355 (1391)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 2.1E-23 4.5E-28 203.1 11.0 146 266-465 16-172 (200)
396 KOG0066 eIF2-interacting prote 99.9 1E-22 2.2E-27 209.3 13.2 202 243-470 584-789 (807)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.7E-22 3.6E-27 198.6 11.8 84 377-460 119-211 (213)
398 COG1245 Predicted ATPase, RNas 99.9 4.5E-22 9.7E-27 206.3 10.0 171 274-458 97-288 (591)
399 KOG0060 Long-chain acyl-CoA tr 99.9 3.7E-21 8.1E-26 204.7 16.8 201 243-458 431-641 (659)
400 cd03285 ABC_MSH2_euk MutS2 hom 99.9 8.5E-22 1.8E-26 194.7 10.6 151 264-466 17-175 (222)
401 cd03241 ABC_RecN RecN ATPase i 99.9 3E-21 6.4E-26 197.2 13.7 80 380-460 166-249 (276)
402 cd03283 ABC_MutS-like MutS-lik 99.8 2.5E-21 5.5E-26 188.2 10.3 146 264-456 14-163 (199)
403 COG2401 ABC-type ATPase fused 99.8 2.7E-20 5.9E-25 191.0 14.6 200 244-461 356-587 (593)
404 cd03239 ABC_SMC_head The struc 99.8 4.4E-20 9.5E-25 176.4 14.4 73 385-458 95-172 (178)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 6E-20 1.3E-24 172.8 12.1 138 268-458 12-155 (162)
406 cd03243 ABC_MutS_homologs The 99.8 2.6E-20 5.7E-25 181.5 6.0 153 269-469 21-176 (202)
407 cd03242 ABC_RecF RecF is a rec 99.8 9.7E-19 2.1E-23 178.1 17.7 190 266-461 11-269 (270)
408 cd03282 ABC_MSH4_euk MutS4 hom 99.8 1.8E-19 4E-24 175.7 10.9 142 264-451 16-159 (204)
409 PRK00349 uvrA excinuclease ABC 99.8 4.6E-19 9.9E-24 205.3 15.6 131 337-472 435-585 (943)
410 KOG0064 Peroxisomal long-chain 99.8 1.8E-19 3.9E-24 189.5 9.0 179 245-447 481-673 (728)
411 PRK00635 excinuclease ABC subu 99.8 4E-18 8.7E-23 205.4 21.0 199 266-473 1505-1797(1809)
412 TIGR00630 uvra excinuclease AB 99.8 1.3E-18 2.7E-23 201.3 16.1 132 338-472 434-583 (924)
413 KOG0066 eIF2-interacting prote 99.8 5.9E-20 1.3E-24 189.0 4.2 215 245-468 264-495 (807)
414 COG0178 UvrA Excinuclease ATPa 99.8 1.4E-17 3E-22 183.5 17.9 128 338-473 783-920 (935)
415 TIGR02858 spore_III_AA stage I 99.7 1.4E-17 2.9E-22 168.7 11.6 141 278-470 112-267 (270)
416 KOG0063 RNAse L inhibitor, ABC 99.7 1E-16 2.2E-21 165.3 13.2 176 264-457 349-531 (592)
417 cd03284 ABC_MutS1 MutS1 homolo 99.7 2.6E-17 5.6E-22 162.1 8.1 155 264-470 18-179 (216)
418 PRK00064 recF recombination pr 99.6 7.1E-15 1.5E-19 155.7 20.0 78 382-461 271-359 (361)
419 smart00534 MUTSac ATPase domai 99.6 1.2E-16 2.6E-21 153.6 4.4 92 368-463 47-141 (185)
420 PRK07721 fliI flagellum-specif 99.6 6.7E-14 1.5E-18 150.6 18.1 176 264-470 146-341 (438)
421 cd03281 ABC_MSH5_euk MutS5 hom 99.6 3.3E-14 7.1E-19 139.8 12.6 137 265-450 17-161 (213)
422 TIGR01069 mutS2 MutS2 family p 99.5 8.8E-15 1.9E-19 167.8 9.7 131 270-447 314-449 (771)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.4E-14 2.9E-19 142.9 7.5 177 268-456 16-211 (220)
424 PTZ00132 GTP-binding nuclear p 99.5 1.6E-14 3.4E-19 141.9 7.8 148 279-431 11-204 (215)
425 KOG0063 RNAse L inhibitor, ABC 99.5 4.1E-14 8.9E-19 146.3 9.5 180 275-458 98-288 (592)
426 cd00820 PEPCK_HprK Phosphoenol 99.5 3.1E-14 6.6E-19 123.7 6.1 75 264-347 2-77 (107)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.9E-12 4.1E-17 127.8 12.6 138 264-448 18-159 (222)
428 TIGR00634 recN DNA repair prot 99.4 7.2E-13 1.6E-17 148.3 10.4 77 383-460 439-519 (563)
429 PRK00409 recombination and DNA 99.4 9.9E-13 2.1E-17 151.4 11.7 148 268-463 319-469 (782)
430 PRK06793 fliI flagellum-specif 99.4 1.5E-12 3.3E-17 139.2 11.8 169 244-466 129-305 (432)
431 TIGR00618 sbcc exonuclease Sbc 99.4 8E-13 1.7E-17 157.9 10.7 83 377-459 943-1036(1042)
432 PHA02562 46 endonuclease subun 99.4 1.1E-12 2.3E-17 147.2 9.0 81 379-461 463-555 (562)
433 PRK08533 flagellar accessory p 99.4 5.6E-12 1.2E-16 125.5 12.6 148 245-445 7-164 (230)
434 PRK13695 putative NTPase; Prov 99.4 5E-13 1.1E-17 127.1 4.6 83 378-464 72-156 (174)
435 cd03286 ABC_MSH6_euk MutS6 hom 99.3 1.8E-11 3.9E-16 120.6 14.6 140 264-450 17-160 (218)
436 PRK10869 recombination and rep 99.3 4.2E-12 9.2E-17 141.3 10.7 76 384-460 430-509 (553)
437 cd01128 rho_factor Transcripti 99.3 2.4E-12 5.2E-17 129.2 7.8 176 266-461 6-211 (249)
438 cd01124 KaiC KaiC is a circadi 99.3 3.6E-11 7.9E-16 115.0 12.2 82 377-458 64-164 (187)
439 PF13304 AAA_21: AAA domain; P 99.3 1.6E-11 3.5E-16 120.7 9.4 66 381-446 233-302 (303)
440 PRK10246 exonuclease subunit S 99.2 3.1E-11 6.8E-16 143.9 10.7 81 378-458 943-1032(1047)
441 PRK03918 chromosome segregatio 99.2 3E-11 6.5E-16 142.5 10.3 79 379-458 783-868 (880)
442 PRK06995 flhF flagellar biosyn 99.2 3.6E-11 7.8E-16 130.4 9.8 150 265-441 244-400 (484)
443 TIGR00606 rad50 rad50. This fa 99.2 5.2E-11 1.1E-15 145.3 11.1 73 379-451 1194-1278(1311)
444 COG0178 UvrA Excinuclease ATPa 99.2 2.4E-10 5.3E-15 127.0 14.9 134 338-474 428-579 (935)
445 PRK13830 conjugal transfer pro 99.1 9.4E-10 2E-14 128.1 18.4 76 399-475 649-735 (818)
446 TIGR02168 SMC_prok_B chromosom 99.1 6E-11 1.3E-15 143.6 8.9 80 377-457 1082-1165(1179)
447 PRK01156 chromosome segregatio 99.1 1.1E-10 2.3E-15 138.0 10.7 77 380-457 797-883 (895)
448 TIGR02788 VirB11 P-type DNA tr 99.1 8.6E-11 1.9E-15 122.0 7.3 143 270-471 137-280 (308)
449 cd01120 RecA-like_NTPases RecA 99.1 2.6E-10 5.6E-15 105.5 9.8 131 279-448 1-142 (165)
450 TIGR03238 dnd_assoc_3 dnd syst 99.1 6.2E-11 1.3E-15 126.8 2.8 52 264-317 19-71 (504)
451 TIGR02169 SMC_prok_A chromosom 99.0 8E-10 1.7E-14 133.9 9.5 81 377-458 1067-1151(1164)
452 PRK06067 flagellar accessory p 99.0 3.3E-09 7.2E-14 105.7 11.7 152 273-457 21-186 (234)
453 TIGR03881 KaiC_arch_4 KaiC dom 98.9 3.3E-10 7.2E-15 112.4 2.3 165 266-457 8-188 (229)
454 TIGR02655 circ_KaiC circadian 98.9 4.6E-11 9.9E-16 131.5 -5.2 160 273-457 17-190 (484)
455 TIGR01026 fliI_yscN ATPase Fli 98.9 1.5E-08 3.2E-13 109.5 14.0 178 264-472 151-348 (440)
456 PRK07196 fliI flagellum-specif 98.9 1.6E-09 3.4E-14 116.2 5.7 88 264-352 143-240 (434)
457 PRK02224 chromosome segregatio 98.9 3.5E-09 7.5E-14 125.1 9.1 78 381-459 778-869 (880)
458 cd02023 UMPK Uridine monophosp 98.8 2.7E-09 5.9E-14 103.5 5.3 114 279-418 1-114 (198)
459 TIGR00611 recf recF protein. A 98.8 8.1E-09 1.8E-13 109.6 7.6 62 384-447 275-345 (365)
460 PRK06002 fliI flagellum-specif 98.8 1.3E-08 2.7E-13 109.5 9.0 85 244-334 138-230 (450)
461 cd01131 PilT Pilus retraction 98.8 1.4E-08 3.1E-13 98.7 8.7 57 394-457 66-122 (198)
462 cd01130 VirB11-like_ATPase Typ 98.8 5.1E-09 1.1E-13 100.8 5.4 84 266-351 14-99 (186)
463 smart00382 AAA ATPases associa 98.8 1.6E-07 3.4E-12 83.5 14.2 117 276-442 1-125 (148)
464 COG3910 Predicted ATPase [Gene 98.8 1.4E-07 3E-12 89.0 13.0 83 377-460 122-205 (233)
465 PRK13891 conjugal transfer pro 98.6 6.6E-07 1.4E-11 104.9 17.7 54 395-448 680-735 (852)
466 PRK14079 recF recombination pr 98.6 7.6E-08 1.6E-12 101.7 8.2 76 384-465 263-347 (349)
467 PRK06315 type III secretion sy 98.6 9.5E-08 2.1E-12 102.9 7.8 167 264-469 152-347 (442)
468 TIGR02680 conserved hypothetic 98.6 1E-07 2.3E-12 116.4 7.9 65 377-443 1240-1316(1353)
469 cd01125 repA Hexameric Replica 98.5 2.9E-07 6.3E-12 92.1 9.7 46 399-445 108-161 (239)
470 PRK09825 idnK D-gluconate kina 98.5 6.1E-08 1.3E-12 92.6 4.4 67 276-346 2-68 (176)
471 COG0419 SbcC ATPase involved i 98.5 2.8E-07 6E-12 109.2 10.3 80 379-459 810-898 (908)
472 TIGR00554 panK_bact pantothena 98.5 9.6E-08 2.1E-12 97.9 4.9 74 278-352 63-138 (290)
473 TIGR00416 sms DNA repair prote 98.5 1E-07 2.2E-12 104.0 5.4 161 266-476 82-263 (454)
474 PRK13898 type IV secretion sys 98.5 3.2E-06 7E-11 98.9 18.1 51 398-448 638-690 (800)
475 TIGR02903 spore_lon_C ATP-depe 98.5 5E-07 1.1E-11 102.2 11.0 110 276-429 174-291 (615)
476 PRK05399 DNA mismatch repair p 98.5 7.4E-07 1.6E-11 104.3 12.6 146 265-463 596-749 (854)
477 PLN03210 Resistant to P. syrin 98.5 5.2E-07 1.1E-11 109.4 11.4 144 269-456 199-348 (1153)
478 cd01876 YihA_EngB The YihA (En 98.5 7E-08 1.5E-12 89.1 2.8 65 360-429 99-168 (170)
479 PRK09270 nucleoside triphospha 98.5 1.9E-07 4.1E-12 92.9 5.7 73 276-352 32-108 (229)
480 PRK00454 engB GTP-binding prot 98.4 1.1E-07 2.4E-12 91.4 2.8 65 361-430 125-192 (196)
481 PRK00300 gmk guanylate kinase; 98.4 4.2E-07 9.2E-12 88.4 6.6 28 275-302 3-30 (205)
482 TIGR01420 pilT_fam pilus retra 98.3 3.5E-06 7.6E-11 89.0 12.2 123 274-456 119-242 (343)
483 PRK10416 signal recognition pa 98.3 6E-07 1.3E-11 93.6 4.9 72 275-346 112-190 (318)
484 PF12698 ABC2_membrane_3: ABC- 98.3 1.4E-07 3E-12 97.3 0.0 150 2-177 194-344 (344)
485 TIGR03880 KaiC_arch_3 KaiC dom 98.3 1.5E-06 3.3E-11 85.9 7.3 57 401-457 106-177 (224)
486 PRK08149 ATP synthase SpaL; Va 98.3 1.2E-06 2.6E-11 94.2 6.9 69 264-333 139-215 (428)
487 cd01854 YjeQ_engC YjeQ/EngC. 98.3 6.3E-07 1.4E-11 92.3 4.5 84 267-351 152-243 (287)
488 PF13558 SbcCD_C: Putative exo 98.3 1.3E-06 2.8E-11 74.0 5.6 52 378-429 26-90 (90)
489 TIGR00235 udk uridine kinase. 98.3 3.1E-07 6.7E-12 89.8 2.0 29 275-303 4-32 (207)
490 PRK14722 flhF flagellar biosyn 98.3 1.8E-06 3.8E-11 91.5 7.8 73 264-355 124-196 (374)
491 PRK14723 flhF flagellar biosyn 98.2 4.4E-06 9.5E-11 95.2 10.6 71 266-355 174-244 (767)
492 PRK07594 type III secretion sy 98.2 1.3E-06 2.9E-11 93.9 6.1 65 244-314 128-192 (433)
493 cd01136 ATPase_flagellum-secre 98.2 2.1E-06 4.6E-11 89.3 7.1 176 264-469 57-251 (326)
494 PRK10078 ribose 1,5-bisphospho 98.2 1.5E-06 3.2E-11 83.6 5.2 53 277-332 2-55 (186)
495 PRK01889 GTPase RsgA; Reviewed 98.2 2.5E-06 5.4E-11 90.4 7.4 80 266-348 184-263 (356)
496 cd01121 Sms Sms (bacterial rad 98.2 2.4E-06 5.1E-11 90.9 6.8 42 273-314 78-120 (372)
497 TIGR00152 dephospho-CoA kinase 98.2 2E-06 4.3E-11 82.8 5.6 70 388-459 61-133 (188)
498 PRK14721 flhF flagellar biosyn 98.2 3.4E-06 7.3E-11 90.7 7.2 64 274-356 188-251 (420)
499 PRK09862 putative ATP-dependen 98.2 1.7E-06 3.7E-11 95.0 4.8 63 248-316 187-249 (506)
500 cd00009 AAA The AAA+ (ATPases 98.1 1E-05 2.2E-10 72.5 8.7 54 390-444 72-131 (151)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-92 Score=849.60 Aligned_cols=542 Identities=29% Similarity=0.493 Sum_probs=440.7
Q ss_pred CccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 008362 1 MMKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTAS 80 (568)
Q Consensus 1 ~m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~ 80 (568)
+||||||++++||++||+..+++.++.+++++++ +....+|+.+++.++|+++++|++++|++||++|+||+|++.|+
T Consensus 685 ~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~i--l~~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFska~~A~ 762 (2272)
T TIGR01257 685 TLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIF--IMHGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFSKASLAA 762 (2272)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH--HhhCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 4999999999999999988776554433332222 22346789999999999999999999999999999999999999
Q ss_pred HHHHhHHhhhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCC-----cc
Q 008362 81 VIGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDS-----EN 155 (568)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~~ 155 (568)
+++.+++|+..++. .+.....+ ..+...+.+++++|+.+++.|+..++.++..+ .|++|+++.++ ..
T Consensus 763 ~~~~li~f~~~lp~--~~~~~~~~-~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~-----~G~~w~n~~~~~~~~d~~ 834 (2272)
T TIGR01257 763 ACSGVIYFTLYLPH--ILCFAWQD-RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQG-----LGLQWSNIGNSPLEGDEF 834 (2272)
T ss_pred HHHHHHHHHHHHHH--HHHhhccc-ccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhC-----CCcccccccccccCCCCc
Confidence 99999988866543 22222222 23333445678999999999999998876554 48999998643 23
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCccccchhccccccCCCCC--CCCCC---CCcccccccCCCchhHH
Q 008362 156 GMKEVLIIMFVEWLLLLGIAYYVDKILSSGGA-KGPLYFLQNFKKKSRSSFRK--PSLGR---QDSKVFVSMEKPDVTQE 229 (568)
Q Consensus 156 ~~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g-~~p~~f~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~e 229 (568)
+++.+++||++|+++|++|+||+|+|+|++|| ++||||+. .+++|..... ..... ..+....+.++++..+.
T Consensus 835 s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~--~~syW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (2272)
T TIGR01257 835 SFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLL--QESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEG 912 (2272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCccccc--chhhhcCCccccccccccccccccccccccccccccc
Confidence 56788999999999999999999999999999 99999873 2222210000 00000 00000000111110000
Q ss_pred --HHHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 230 --RERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 230 --~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
....++ ..+.....|+++||+|.|++. ++.||+|+||++++||++||+||||||||||+|+|+|+.+|++|+
T Consensus 913 ~~~~~~E~--~~~~~~~~L~I~nLsK~y~~~----~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~ 986 (2272)
T TIGR01257 913 INDSFFER--ELPGLVPGVCVKNLVKIFEPS----GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGT 986 (2272)
T ss_pred cccccccc--ccCCCCceEEEEeEEEEecCC----CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceE
Confidence 000111 011234579999999999631 357999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 308 i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
|+++|+++.....++|+.+|||||++.+++.+||+||+.++++++|.+.++.+++++++++.+||. +++++++++|||
T Consensus 987 I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSG 1064 (2272)
T TIGR01257 987 VLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH--HKRNEEAQDLSG 1064 (2272)
T ss_pred EEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCH
Confidence 999999997666677889999999999999999999999999988876666677899999999997 478999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||||+||+||+++|+++||||||+||||.+|+.+|++|++.++|+|||++||+|++++.+||||++|++|+++|.|++
T Consensus 1065 GqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEeCCC---------------------------------------cHHHHHHHHHhcCCCceeEEE
Q 008362 468 KELKARYGGSYVFTMTTSAD---------------------------------------HEEEVESMAKRLSPGANKIYQ 508 (568)
Q Consensus 468 ~~l~~~~~~~~~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~ 508 (568)
++||++||.||.+++..+.. ...++.++++++.|+++....
T Consensus 1145 ~~Lk~~~g~gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~iP~a~l~~~ 1224 (2272)
T TIGR01257 1145 LFLKNCFGTGFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHVPEAKLVEC 1224 (2272)
T ss_pred HHHHHhcCCcEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhCCCcEEEec
Confidence 99999999999999864320 234678889999999999999
Q ss_pred ecceEEEEecCCcC---cHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhcccc
Q 008362 509 ISGTQKFELPKQEV---RVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHAQ 562 (568)
Q Consensus 509 ~~~~~~~~~p~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~~ 562 (568)
.+++.+|.+|.+.. .++.+|+.||+.+++++|.+|++++|||||||++++++.+
T Consensus 1225 ~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~ 1281 (2272)
T TIGR01257 1225 IGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDAD 1281 (2272)
T ss_pred cCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhcc
Confidence 99999999998753 5899999999999999999999999999999999997653
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.9e-81 Score=756.38 Aligned_cols=526 Identities=31% Similarity=0.523 Sum_probs=422.1
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeec-cchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTL-NSYGIQFVFYIIYINLQIALAFLVAALFSNVKTAS 80 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~ 80 (568)
..++|++..+||+++|+||++++++.+++++++..+++..-|.. .+++.+++++++||+|.|+++|++|++|+++.+|.
T Consensus 1713 Q~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~ 1792 (2272)
T TIGR01257 1713 QFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAY 1792 (2272)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Confidence 35899999999999999999998887777665555565544443 45677888999999999999999999999999998
Q ss_pred HHHHhHHhhhhHHHH---HHHHhhccCCC---cchhhhhhhcccchhHHHHHHHHHHhhhhc-------cccCCCCCCcc
Q 008362 81 VIGYICVFGTGLLGA---FLLQSFVEDPS---FPRRWITAMELYPGFALYRGLYEFGTYSFR-------GHSMGTDGMSW 147 (568)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~-------~~~~~~~~~~w 147 (568)
+...++.+..|++.+ +++..+..+.. ....+..++.++|.||++.|+..++..... +.....+...|
T Consensus 1793 ~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1872 (2272)
T TIGR01257 1793 VALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYAQFGEEHSANPFQW 1872 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHHhhcccccCCccch
Confidence 766655554444322 22222211111 122344456789999999999888764321 11111123345
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhccccccCCCCCCCCCCCCcccccccCCCchh
Q 008362 148 ADLSDSENGMKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVT 227 (568)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (568)
+. .+..+++|++++++|+++++++|+-.. .+.+.+. +.. .....+|+||.
T Consensus 1873 ~~-------~g~~ll~m~~~~iv~flLl~~ie~~~~----------~~~~~~~-------~~~------~~~~~eD~DV~ 1922 (2272)
T TIGR01257 1873 DL-------IGKNLVAMAVEGVVYFLLTLLIQHHFF----------LSRWIAE-------PAK------EPIFDEDDDVA 1922 (2272)
T ss_pred hh-------ccHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhhccc-------cCc------CcCCCchhHHH
Confidence 43 234688999999999999999996321 0000000 000 01124788999
Q ss_pred HHHHHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 228 QERERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
+|++++... .....+|+++||+|+|+++ ++.||+|+||+|++|||+||+||||||||||+|+|+|+++|++|+
T Consensus 1923 ~Er~rV~~~---~~~~~~L~v~nLsK~Y~~~----~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~ 1995 (2272)
T TIGR01257 1923 EERQRIISG---GNKTDILRLNELTKVYSGT----SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995 (2272)
T ss_pred HHHHHHhcc---CCCCceEEEEEEEEEECCC----CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 999998642 2234589999999999741 257999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 308 AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 308 i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
|+++|+++.....+.|++||||||++.+++.+|++||+.++++++|.+.++.+++++++++.++|. +++++++++|||
T Consensus 1996 I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~--~~~dk~~~~LSG 2073 (2272)
T TIGR01257 1996 ATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS--LYADRLAGTYSG 2073 (2272)
T ss_pred EEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHhcCChhhCCH
Confidence 999999997655667889999999999999999999999999998887666677889999999996 488999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||||||++|+||+++|++++|||||+||||.+|+.+|++|++. ++|+|||+|||+|+|++++|||+++|++|+++|.|+
T Consensus 2074 GqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCcH------HHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCce
Q 008362 467 PKELKARYGGSYVFTMTTSADHE------EEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTV 540 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i 540 (568)
++++|++|+.+|.++++.+.... +.+.++++..+|++...+.+.+...|.+|.. .++++|+.+++.+.+++|
T Consensus 2154 ~q~Lk~~~g~g~~l~i~~~~~~~~~~~~~~~v~~~i~~~fp~a~~~e~~~~~l~~~i~~~--~~~~if~~L~~~k~~l~I 2231 (2272)
T TIGR01257 2154 IQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSS--SLARIFQLLISHKDSLLI 2231 (2272)
T ss_pred HHHHHHHhCCceEEEEEEcCcchhhhhHHHHHHHHHhhcCccceeeccccceEEEEeCcc--cHHHHHHHHHhcCCCCCe
Confidence 99999999999999887643221 1344556677898876666667788898864 689999999988888999
Q ss_pred eEEEeccCCHHHHHHHhhcccccccCCC
Q 008362 541 FAWGLADTTLEDVFIKVARHAQAFEDLP 568 (568)
Q Consensus 541 ~~~~~~~~tLEdvFl~~~~~~~~~~~~~ 568 (568)
.+|+++++||||||++++++++...++|
T Consensus 2232 ~dysvsqtSLE~VFl~l~~~q~~~~~~~ 2259 (2272)
T TIGR01257 2232 EEYSVTQTTLDQVFVNFAKQQTETYDLP 2259 (2272)
T ss_pred EEEEcCCCCHHHHHHHHhccccccCCCC
Confidence 9999999999999999999998877775
No 3
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.3e-82 Score=737.28 Aligned_cols=537 Identities=41% Similarity=0.653 Sum_probs=432.4
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASV 81 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~~ 81 (568)
|+|+|+++++||++++.||++.+++.++++.+++.+++ ++..++..++++++++|+.+.+++.|++|++|+++.+|++
T Consensus 331 ~~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v 408 (885)
T KOG0059|consen 331 QLIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASV 408 (885)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcee
Confidence 78999999999999999999999998888888877666 6667788899999999999999999999999999999998
Q ss_pred HHHhHHhhhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCCc--cc---
Q 008362 82 IGYICVFGTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSE--NG--- 156 (568)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~--- 156 (568)
...++.+++++...+....+......+..+.....+.|.|.+..+.+.++............+..|..+.... ..
T Consensus 409 ~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (885)
T KOG0059|consen 409 ILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESFYTLLL 488 (885)
T ss_pred ehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccccchhH
Confidence 8877777666543333333333334444455556677888777666666554443322223456676554320 00
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccchhccccccCCCCCCCCCCCCcccccccCCCchhHHH
Q 008362 157 ------MKEVLIIMFVEWLLLLGIAYYVDKILSSGGAKGPLYFLQNFKKKSRSSFRKPSLGRQDSKVFVSMEKPDVTQER 230 (568)
Q Consensus 157 ------~~~~~~~~~~~~~l~~~l~~yie~v~~~~~g~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (568)
....+..+..++..+.++..++.. ++.++.+. . ............+|+.||..|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~---------------~~~~~~~~---~-~~~~~~~~~~~~~e~~~v~~e~ 549 (885)
T KOG0059|consen 489 EWLLPLIGRRYLALVTEGVKDDLFFLLIFV---------------PFKRRMRA---L-TQNMLKGFEPVEVEKLDVARER 549 (885)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------hhcccccc---c-cccccCCCcCcchhhHHHHHHH
Confidence 011122233333333333222211 11111110 0 0001111123346788899888
Q ss_pred HHHhhhhcCCCCCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 231 ERVEQLLLEPGTSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
++++..........++.++||+|.|+++ ++ |++++|+.|++|||+|++|||||||||++|||+|..+||+|++++
T Consensus 550 ~~v~~~~~~~~~~~~~~~~~L~k~y~~~----~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i 624 (885)
T KOG0059|consen 550 NRVETLLFRSSYSSALVLNNLSKVYGGK----DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALI 624 (885)
T ss_pred HhhhhhhhcccccceEEEcceeeeecch----hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEE
Confidence 8777665554455789999999999863 12 999999999999999999999999999999999999999999999
Q ss_pred CCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 311 QGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 311 ~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+|+++.. +..++++++|||||++.+++.||++||+.++++++|+++++.++.++++++.++|. ++++++++.||||
T Consensus 625 ~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~--~~~~~~~~~ySgG 702 (885)
T KOG0059|consen 625 KGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG--PYANKQVRTYSGG 702 (885)
T ss_pred ecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh--hhhccchhhCCCc
Confidence 9999976 44558999999999999999999999999999999999999999999999999997 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||||++|.|++++|++++|||||+||||.+||.+|+++++.+ +|++||+|||+|+|||.+|||++||.+|+++|.|++
T Consensus 703 ~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 703 NKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred chhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecCh
Confidence 9999999999999999999999999999999999999999975 466999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEeCCCcH-HHHHHHHHhcCCCceeEEEecceEEEEecCCcC-cHHHHHHHHHHHhcCCceeEEEe
Q 008362 468 KELKARYGGSYVFTMTTSADHE-EEVESMAKRLSPGANKIYQISGTQKFELPKQEV-RVSDVFQAVEEAKSRFTVFAWGL 545 (568)
Q Consensus 468 ~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~~~i~~~~~ 545 (568)
+++|++||.||.++++.+...+ +.+...+++.+|++...+++.....|++|.++. .++++|..+|..+..+++++|++
T Consensus 783 q~LKsrfG~gy~l~~~~~~~~~~~~v~~~~~~~~p~a~~~~~~~~~~~~~ip~~~~~~~~~vF~~le~~~~~~~i~dysl 862 (885)
T KOG0059|consen 783 QELKSRYGSGYTLTVRIKELPEVSEVEKLLQNRFPGAVLKERHAGLLAFEIPKDEVVSLSEVFLALEKAKESFGIEDYSL 862 (885)
T ss_pred HHHHhhcCCcEEEEEEECCCcccchHHHHHHHhCCCcchhhhhhceEEEEcccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999876544 478888999999999999888889999996654 46799999999999999999999
Q ss_pred ccCCHHHHHHHhhcccccccC
Q 008362 546 ADTTLEDVFIKVARHAQAFED 566 (568)
Q Consensus 546 ~~~tLEdvFl~~~~~~~~~~~ 566 (568)
+++||||||++++++++..++
T Consensus 863 sq~tLe~VFi~~a~~q~~~~~ 883 (885)
T KOG0059|consen 863 SQTTLEDVFLILAKTQEDDNS 883 (885)
T ss_pred HHhhHHHHHHHHhcccccccc
Confidence 999999999999999886654
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=445.79 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=208.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~ 322 (568)
+|+++||+|+||+ ..+|+|||++|++||+++|+||+|||||||+|||.||.+|++|+|.++|+++.. +..++
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 6999999999983 689999999999999999999999999999999999999999999999988743 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
|+++|+|||+.+|||.+||.||+.+.. ..++.++++.++++.++|+++||. +++|.+|.+|||||||||+|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~--~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch--hhhhhCccccCcHHHHHHHHHHHHcC
Confidence 999999999999999999999999854 467889999999999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++++|||||+|||+...++.+.++++ ++|.|.+++||+|..|.+.||||++|++|++++.|+|+++..+
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999996 5799999999999999999999999999999999999998764
No 5
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-59 Score=445.98 Aligned_cols=295 Identities=28% Similarity=0.508 Sum_probs=253.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++++++|+|+|| ++.||+|+||++++|+++|++|||||||||++|||.|+++||+|+|.++|.+++. ..+.
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhh
Confidence 589999999998 4789999999999999999999999999999999999999999999999998864 4567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+|||.|.+..|++.+||.|.|.|+++++|.+.++.+++++.+|+++++. ++.++++.+||.|++||+.+..|++++|+
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMT 483 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~ 483 (568)
++|||||+|||||.+.+.+.+.+.+++ +|.|||++||.|+.++++||++++|++|+.+.+|+.+++++.||.... .+.
T Consensus 151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~-~ie 229 (300)
T COG4152 151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRL-VIE 229 (300)
T ss_pred EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceE-EEe
Confidence 999999999999999999999999975 699999999999999999999999999999999999999999987632 233
Q ss_pred eCCCcHHHHHHHHHhcCCCceeEEEe-cceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 484 TSADHEEEVESMAKRLSPGANKIYQI-SGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.+.. .+++ ...|+....... .+..... |.+...-.++|+.+. .+..|..|.+..+||+|+|+.-+...
T Consensus 230 s~~s-~eeL-----~~ipgi~~~~~~~~G~~~i~-ie~e~~a~~ifq~~a---~~g~i~~Fe~~~PsL~diFi~~~g~~ 298 (300)
T COG4152 230 SDLS-LEEL-----ANIPGILKITETKDGSWRIQ-IENETVAREIFQEVA---RDGYIQRFELQEPSLHDIFIEKVGGV 298 (300)
T ss_pred ccCc-hHHH-----hcCCCceeeeeccCCceEee-cccchHHHHHHHHHh---ccceeEEEeecCCCHHHHHHHHhccc
Confidence 2211 1112 224666555443 3333333 333334456777664 35679999999999999999876543
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-60 Score=454.69 Aligned_cols=225 Identities=31% Similarity=0.477 Sum_probs=214.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
||+++|++|+|+ ++.|++|+||+|++||+++++||+||||||+||||.++++||+|+|+++|+++.+ +..++|
T Consensus 1 MI~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 589999999998 3679999999999999999999999999999999999999999999999999976 667899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
++|||+-|...|||++||.||+.+...++|+++++.+++++++|+.+||++.+++++++++|||||+||+.+||||+.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999998656999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+++++|||+++|||.+|.++.+.++++. + |+|||++||||+||..++|||++|++|+++..++|+++..+..
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 9999999999999999999999999864 3 9999999999999999999999999999999999999977543
No 7
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.9e-58 Score=470.60 Aligned_cols=287 Identities=37% Similarity=0.670 Sum_probs=240.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|+|++ ++.||+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++..+..++++
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5889999999983 26799999999999999999999999999999999999999999999999999777778899
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+|++|||.|++++++.+.+..+++++++++.++|.+ .+++++++||+|||||++||+||+++|+
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED--KANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch--hhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998766566778999999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-ceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g-~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
++||||||+||||.+|+++|++|+++ ++| +||++|||.++|++.+||||++|++|++++.|+++++.+.++.......
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~~~~~~~~ 236 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIEL 236 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhccCceEEE
Confidence 99999999999999999999999996 455 8999999999999999999999999999999999999888776544333
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVAR 559 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~ 559 (568)
......... .. ..... .. . .....++...+.+ ....+..+...+.+||++|++..+
T Consensus 237 ~~~~~~~~~---~~----~~~~~---~~--------~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 292 (293)
T COG1131 237 EPERLELAE---LL----EGLKL---VK--------G-EEELAEILEALLE--EGVKIESIEVKEPSLEDVFLELTG 292 (293)
T ss_pred ecccccchh---hh----hcccc---cc--------c-chhHHHHHHHHHH--cCCceeeeecCCCCHHHHHHHHcc
Confidence 321111110 00 00000 00 0 1123444444443 345666889999999999998765
No 8
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-57 Score=469.18 Aligned_cols=298 Identities=35% Similarity=0.527 Sum_probs=239.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||+|+|++ +.||+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.....+.
T Consensus 5 ~~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 5 VAPIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 357999999999973 57999999999999999999999999999999999999999999999999997665667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|+++|||||++.+++.+|++||+.+++++++.+..+..++++++++.++|. +..++++++||||||||++||+||+++
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE--NKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999988888776666677889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFT 481 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~ 481 (568)
|+++||||||+||||.+|+.+|++|++++ +|+|||++||+++|++.+||||++|++|++++.|+++++.+.......+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~ 236 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhccCCCeEEE
Confidence 99999999999999999999999999874 59999999999999999999999999999999999999987654443444
Q ss_pred EEeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 482 MTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
+.... ......... +........+... .+... ...++...+.. ..++ .+...++||||+|++++++.
T Consensus 237 ~~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~---~~~~-~~~~~~~sLed~f~~~~~~~ 303 (306)
T PRK13537 237 IYGPD--PVALRDELA---PLAERTEISGETL--FCYVR--DPEPLHARLKG---RAGL-RYLHRPANLEDVFLRLTGRE 303 (306)
T ss_pred EEcCC--hHHHHHHhh---hccceeeeeCCEE--EEEeC--CHHHHHHHHHh---ccCc-eEEecCCCHHHHHHHHhCcc
Confidence 43321 111111111 1111111122222 22211 12445554432 1123 34457899999999998654
No 9
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=439.69 Aligned_cols=224 Identities=33% Similarity=0.572 Sum_probs=215.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
|+++++++|+|+. ..+|++||||++++|||+||+|||||||||+||||++++.|++|.|+++|.|...++..+|+
T Consensus 1 Ml~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 5889999999984 35599999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+||+++....+|..||++|||.|++++.++.+.+.+.+++++.+.++|. +++|++++++|.||||||+|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~--~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL--EYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH--HHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 9999998899999999999999999999999999999999999999996 59999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+++|||||||||..+++.+.+.+++.+ +|++||++||.|+|++++|||++++++|+++..|+++.+..+.+
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence 999999999999999999999999986 59999999999999999999999999999999999999988754
No 10
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-58 Score=454.74 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=211.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 320 (568)
+|++++++|.|++. +++...||+||||+|++|||+|++|++|||||||+||+.+|.+||+|+|.++|+|+.. ...
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 58999999999863 2234679999999999999999999999999999999999999999999999999854 456
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|++||++||++.|+...||.||+.|+..+.|.++++.++++.++|+.+||+ +++++++.+|||||||||+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~--dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh--hhhccCchhcCcchhhHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999997 5899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|++|+.|||||+|||...+.+.++|+++. -|.||+++||.|+.+.++|||+++|++|++++.|+..++..+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 9999999999999999999999999999964 499999999999999999999999999999999999887654
No 11
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.2e-56 Score=457.01 Aligned_cols=298 Identities=29% Similarity=0.462 Sum_probs=243.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....++++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYGT------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEECC------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 4889999999973 5799999999999999999999999999999999999999999999999998765566788
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|+.||+.+.+++++.+.++..++++++++.+||. +..++++++||||||||+++|+||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR--PEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988887766666677889999999997 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEEe
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTT 484 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~ 484 (568)
++||||||+||||.+++.+|+.++++++++|||++||++++++++|||+++|++|++++.|++++++++.+ ...+.+..
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~~~~i~~ 232 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAANK-KQVIEVEF 232 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHhcC-CceEEEEe
Confidence 99999999999999999999999998778999999999999999999999999999999999999987644 33344443
Q ss_pred CCCcHHHHHHHHHhcCCCceeEEE-ecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHh
Q 008362 485 SADHEEEVESMAKRLSPGANKIYQ-ISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKV 557 (568)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~ 557 (568)
....... .... .++...... .++...+..+.......++...+. ..+..+.++...++||||+|.++
T Consensus 233 ~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~sLe~~~~~~ 300 (301)
T TIGR03522 233 EEQIDLQ---LFET-LEEISSVKNTGGNTWKLTFETPNDTRPEIFKLAQ--QKGLKLISLQQNEKNLEQVFREI 300 (301)
T ss_pred cCcchhH---HHhh-ccccceeeecCCCeEEEEEcCccchHHHHHHHHH--HCCCceEEEEeCCCCHHHHHHHh
Confidence 2211111 1111 112111111 122223333332223455655553 24678999999999999999876
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.4e-56 Score=462.86 Aligned_cols=297 Identities=36% Similarity=0.541 Sum_probs=238.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|+|++ +.||+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......+
T Consensus 40 ~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~ 113 (340)
T PRK13536 40 VAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLAR 113 (340)
T ss_pred eeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHh
Confidence 47999999999973 579999999999999999999999999999999999999999999999999876556678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+++.+++.+..+..++++++++.++|. +..++++++||||||||++||+||+++|
T Consensus 114 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~--~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 114 ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred ccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999888777765555667788999999997 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
+++||||||+||||.+|+.+|++|+++ ++|+|||++||++++++.+||||++|++|++++.|+++++++.......+.+
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~~~~~~~~~~ 271 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEI 271 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhccCceEEEE
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999877654444444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.... .+....... +........+... .+... ...++...+.. ..+ .++.+..+||||+|++++++.
T Consensus 272 ~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~---~~~-~~~~~~~~sLEdvf~~~~~~~ 337 (340)
T PRK13536 272 YGGD--PHELSSLVK---PYARRIEVSGETL--FCYAP--DPEQVRVQLRG---RAG-LRLLQRPPNLEDVFLRLTGRE 337 (340)
T ss_pred EcCC--hHHHHHHhh---cccceEEecCCEE--EEEeC--CHHHHHHHHHh---ccC-ceEEEcCCCHHHHHHHHhccc
Confidence 3211 112222211 1111111112222 22111 12344444431 112 256788999999999998654
No 13
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.8e-56 Score=457.89 Aligned_cols=290 Identities=38% Similarity=0.606 Sum_probs=235.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......++.+||+||++.+++.+|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999999999999987655567788999999999999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
|+.+.+++++.+.++.+++++++++.++|. +..++++++||||||||++||+||+++|+++||||||+||||.+++.+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELG--EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999988877766566667889999999996 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEEEeCCCc-HHHHHHHH----H
Q 008362 424 WNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTMTTSADH-EEEVESMA----K 497 (568)
Q Consensus 424 ~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~----~ 497 (568)
+++|+++ ++|+|||++||++++++.+|||+++|++|++++.|++++++++++..+ +.+...... ........ .
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSMLIAELG 242 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHhcCCce-EEEEecCchhhhhhhhHHHhhhh
Confidence 9999986 468999999999999999999999999999999999999988875442 333322111 11001111 0
Q ss_pred hcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhh
Q 008362 498 RLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVA 558 (568)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~ 558 (568)
...++........+...+.++.......++++.+. ..+..+.++++.++||||+|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~i~~~~~~~~~Le~~f~~~~ 301 (302)
T TIGR01188 243 ETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAI--RNGIRIRSISTERPSLDDVFLKLT 301 (302)
T ss_pred hccccceeeeecCCeEEEEEcCchhHHHHHHHHHH--HCCCceEEEEcCCCCHHHHHHHHh
Confidence 11122211222233344455543333566666664 356789999999999999999875
No 14
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.1e-54 Score=444.83 Aligned_cols=297 Identities=34% Similarity=0.521 Sum_probs=237.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|.|++ +.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 36999999999973 569999999999999999999999999999999999999999999999999865545567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+++..++.+.++..++++++++.++|. +..++++++||||||||++||+||+.+|
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE--SKADVRVALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999877666655555566788899999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVFTM 482 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~~l~~ 482 (568)
+++||||||+||||.+++.++++|+++ ++|+|||++||++++++.+|||+++|++|++++.|+++++.+.....+...+
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 234 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEI 234 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhhcCCCeEEEE
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999876654444444
Q ss_pred EeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEeccCCHHHHHHHhhccc
Q 008362 483 TTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLADTTLEDVFIKVARHA 561 (568)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~tLEdvFl~~~~~~ 561 (568)
.... .+....... +........+... .+... ...++...+.. ....++....+||||+|++++++.
T Consensus 235 ~~~~--~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--~~~~~~~~l~~----~~~~~~~~~~~sLedif~~~~~~~ 300 (303)
T TIGR01288 235 YGGD--PDELRELIR---PYARRIEVSGETL--FCYAR--DPEQVRVQLRG----RTDLRLLQRPPNLEDVFLRLTGRE 300 (303)
T ss_pred EcCC--HHHHHHHhh---hccceeeeeCCEE--EEEeC--CHHHHHHHHhc----ccCceEEecCCCHHHHHHHHhccc
Confidence 3321 122222211 1111111122222 22111 22344444431 123367788999999999998654
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-55 Score=422.79 Aligned_cols=223 Identities=30% Similarity=0.545 Sum_probs=207.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----c
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----D 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~ 318 (568)
.+.|++++|+|+|| ++.+++||||+|++||+++++||+|+|||||+|+|.|+++|++|+|.++|+++.. .
T Consensus 6 ~~~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 45799999999998 4689999999999999999999999999999999999999999999999999854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..++|+++|++||+.+||..|||+||+.|+.+- ..++++..++.+..-|+.+||.. ..+++.|++|||||+||+++||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~-~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRG-AAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCCh-hhhhhCchhhcchHHHHHHHHH
Confidence 346789999999999999999999999997654 35677888888999999999974 4489999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|++.||+++++||||+||||.+...+-++|+++++ |.|++++|||++++..+|||++++.+|+++..|+++++.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 9999999999999999999999999999999999999976
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-54 Score=440.63 Aligned_cols=225 Identities=28% Similarity=0.458 Sum_probs=210.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++||+|.||+ ..||+|+||+|++||+++|+||||||||||||+|+|+++||+|+|.++|++++.-. -.+
T Consensus 2 ~~i~l~~v~K~yg~------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-P~~ 74 (338)
T COG3839 2 AELELKNVRKSFGS------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-PEK 74 (338)
T ss_pred cEEEEeeeEEEcCC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-hhH
Confidence 36999999999984 22999999999999999999999999999999999999999999999999997632 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
|+||+|||+..|||.|||+||+.|..++++.++++.+++++++.+.++|++ +.++++.+|||||||||++||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~--lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH--LLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh--HHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999974 899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCc
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 477 (568)
++++||||.|+||+..|..+...|+++. + |.|+|.+|||-.||..++|||++|++|++...|+|.++.++....
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~ 228 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANL 228 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccch
Confidence 9999999999999999999999999863 3 899999999999999999999999999999999999998765543
No 17
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-54 Score=443.30 Aligned_cols=222 Identities=32% Similarity=0.537 Sum_probs=206.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.++++||+|.|+ +..||+|+||+|++||+++|+||||||||||||||+|+..|++|+|.++|+++..- ...+
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l-pp~k 76 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV-PPEK 76 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-Chhh
Confidence 4799999999998 37899999999999999999999999999999999999999999999999999763 3346
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|.||+|||+.+|||.|||+||+.|+.++++ .++++++++++++++.++|. +++++++.+|||||||||++||||+.+
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~--~~~~R~p~qLSGGQqQRVALARAL~~~ 154 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE--GFADRKPHQLSGGQQQRVALARALVPE 154 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch--hhhhhChhhhChHHHHHHHHHHHhhcC
Confidence 899999999999999999999999988655 34456889999999999997 499999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++||||.|+||..-|.++...++++ + .|.|.|++|||-+||..++|||++|++|++...|+|+++..+.
T Consensus 155 P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 155 PKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred cchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999985 3 4999999999999999999999999999999999999986543
No 18
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-54 Score=404.28 Aligned_cols=222 Identities=32% Similarity=0.564 Sum_probs=204.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
..+.++||.|+|++ +++++++||+|++||++||+|||||||||++.|++|+.+|++|+|.++|.|++.. ..+
T Consensus 3 ~~L~a~~l~K~y~k------r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R 76 (243)
T COG1137 3 STLVAENLAKSYKK------RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR 76 (243)
T ss_pred cEEEehhhhHhhCC------eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHH
Confidence 36889999999984 6799999999999999999999999999999999999999999999999999763 356
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.|..|||+||++..|..|||+||+.....++..+.+ +.+.+++++|+++++.+ .++++..+||||||||+.|||||
T Consensus 77 ArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h--lr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH--LRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred hhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH--HhcCcccccccchHHHHHHHHHH
Confidence 778899999999999999999999998887764433 44556889999999985 89999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+.++||||++|+||.+...+.++++.++ +|..|++|-|+..|...+|||.+|+++|++.+.|+|+++.+.
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999999999975 699999999999999999999999999999999999998653
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-53 Score=412.68 Aligned_cols=204 Identities=28% Similarity=0.467 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..+++++++|.|++ ..||+|+||+|++||+++|+||+|||||||+|+|+|+.+|++|+|.++|..+.. -.
T Consensus 2 ~~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~----p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG----PG 71 (248)
T ss_pred ceEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC----CC
Confidence 36899999999984 679999999999999999999999999999999999999999999999998832 23
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
..+||+||++.|+|-+||+||+.+.....+.++++.+++++++|+.+||. ++.++++++||||||||++|||||+.+|
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~--~~~~~~P~qLSGGMrQRVaiARAL~~~P 149 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA--GFEDKYPHQLSGGMRQRVAIARALATRP 149 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc--chhhcCccccChHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999999998877788888999999999997 5999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
++++||||+++||+.+|..+.+.+.++ +.++||+++|||.+||-.++|||++|.++
T Consensus 150 ~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999885 45899999999999999999999999984
No 20
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.8e-52 Score=435.93 Aligned_cols=224 Identities=30% Similarity=0.461 Sum_probs=203.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+|+++||+|+|++.. ..+++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mI~~~~lsk~y~~~~--~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGT--KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCC--cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 489999999996321 125799999999999999999999999999999999999999999999999998642 23
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|++|||+||++.+++.+||+||+.+.....+.+.++.++++.++++.+||. ++.++++++||||||||++|||||+
T Consensus 79 ~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~--~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG--DKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999877766666667778899999999997 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+||||.+++.++++|+++. + |+|||++||+|+++.++|||+++|++|++++.|+++++..
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999988754
No 21
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=401.76 Aligned_cols=222 Identities=28% Similarity=0.471 Sum_probs=203.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~ 319 (568)
.+|+++||+|+|++ +++||+||||+|++||.++|+||+|||||||||+|.|+.+|++|+|.++|.++.. ..
T Consensus 2 ~~i~~~nl~k~yp~-----~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPG-----GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCC-----CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 47999999999964 4789999999999999999999999999999999999999999999999998854 35
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHh--------hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYG--------RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~--------~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
+++|++|||++|+++|.+.+||.+|+..+. .+-|+..++.+..+-++|+++|+. +++.+++++|||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~--~~A~qra~~LSGGQQQ 154 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL--DKAYQRASTLSGGQQQ 154 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH--HHHHHHhccCCcchhH
Confidence 677899999999999999999999998743 233566677788889999999997 4899999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+|||||+.+|++++.|||+++|||.+.+.+++.|++. ++|.|||++.|+++.|.++||||+-|++|+++.+|++++
T Consensus 155 RVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 155 RVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 999999999999999999999999999999999999985 469999999999999999999999999999999999988
Q ss_pred HHH
Q 008362 470 LKA 472 (568)
Q Consensus 470 l~~ 472 (568)
+.+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 654
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-52 Score=414.83 Aligned_cols=218 Identities=28% Similarity=0.450 Sum_probs=198.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+..|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|+++|+++.+ ..+++.
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 5899999999983 689999999999999999999999999999999999999999999999999975 556677
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.+||+||.+.....+||+|-+.++..- .+...++.++.++++|+.+|+. +++++.+.+||||||||+.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~--~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE--HLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH--HHhcCcccccChhHHHHHHHHHHH
Confidence 8999999999888899999999875321 1223455566899999999997 499999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+++|++++|||||+.||...+.+++++++++. +|+|||+++||++.|.++|||+++|++|++++.|+|+++
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchh
Confidence 99999999999999999999999999999863 599999999999999999999999999999999999775
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-52 Score=414.67 Aligned_cols=228 Identities=29% Similarity=0.486 Sum_probs=206.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe---eCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~---~i~~~~~~ 321 (568)
+|+++|++|.|+. ..|++|||++|+.||.+||+||||||||||||+|+|++.|++|+|.++|+ |.+. ...
T Consensus 2 ~i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~ 74 (345)
T COG1118 2 SIRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAV 74 (345)
T ss_pred ceeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cch
Confidence 5889999999984 67999999999999999999999999999999999999999999999999 6544 122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
-.++||+++|+..||+.|||.||+.|+.+.+.. +..+++.+++++|+.++|+ ...++++.+||||||||+++||||
T Consensus 75 ~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~--~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE--GLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc--chhhcCchhcChHHHHHHHHHHHh
Confidence 236899999999999999999999998877632 3456788999999999997 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCc
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~ 477 (568)
+.+|++|+||||+++||...|+++...|++. .+ |.|.+++|||.+|+.++||||++|++|+|...|+++++.......
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 9999999999999999999999999999985 34 999999999999999999999999999999999999998776665
Q ss_pred EEEE
Q 008362 478 YVFT 481 (568)
Q Consensus 478 ~~l~ 481 (568)
+...
T Consensus 233 fV~~ 236 (345)
T COG1118 233 FVAR 236 (345)
T ss_pred ceec
Confidence 5443
No 24
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-52 Score=394.85 Aligned_cols=223 Identities=27% Similarity=0.441 Sum_probs=208.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-----eEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-----GTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-----G~i~i~G~~i~~- 317 (568)
+.++++||++.|| ++.||+|||++|++++++||+||+||||||+||++..+....+ |+|.++|+++..
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 5799999999998 4789999999999999999999999999999999999877654 999999999965
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
+..++|+++|++||.|.-|| +|++||+.++.+++|...++.++.+++.|+...|.+ ++..++.+..|||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRL 158 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRL 158 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHH
Confidence 46789999999999999999 899999999999999877888899999999999875 2456788889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||||+.+|+||+||||||+|||.+..++-++|.+++++-||+++||+|..|.+++|+.+++..|++++.|+.+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
No 25
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-51 Score=432.79 Aligned_cols=222 Identities=26% Similarity=0.451 Sum_probs=204.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++|+++||+|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..
T Consensus 4 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 76 (351)
T PRK11432 4 KNFVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQ 76 (351)
T ss_pred CcEEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HH
Confidence 357999999999973 56999999999999999999999999999999999999999999999999986432 34
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++++|||||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~--~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA--GFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999987777766677788999999999997 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|++++|||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999986 33 89999999999999999999999999999999999998654
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.8e-51 Score=432.30 Aligned_cols=221 Identities=30% Similarity=0.503 Sum_probs=204.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..... .+
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-~~ 75 (353)
T TIGR03265 3 PYLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-QK 75 (353)
T ss_pred cEEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-HH
Confidence 46999999999973 569999999999999999999999999999999999999999999999999864332 36
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+||.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~--~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP--GSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999987766666667778999999999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++++||||++|||+..|+.+++.|+++ ++ |.|+|++|||++|+..+||||++|++|++++.|+++++.++
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999986 43 89999999999999999999999999999999999998754
No 27
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-52 Score=386.99 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=203.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC----cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT----DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~----~~~ 320 (568)
+|+++||+|+|++ .+.||+||||+|++||++-|.||+||||||++|+|.+..+||+|+|.++|+|+.+ +..
T Consensus 1 mI~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 5889999999985 3679999999999999999999999999999999999999999999999999964 345
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
-+|++||+|||+.-|.+++||+||+.|..++.|.+++++++++.++|+.+||. ++++..+.+||||||||++||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~--~k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK--HKARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc--hhhhcCccccCchHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999997 4899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.+|++||.||||.+|||....++++++.+.. .|.||+++|||.+.+..+-.|++.+++|+++.+..
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999974 69999999999999999999999999999987654
No 28
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-51 Score=432.44 Aligned_cols=221 Identities=24% Similarity=0.460 Sum_probs=202.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 76 (356)
T PRK11650 3 GLKLQAVRKSYDG-----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADR 76 (356)
T ss_pred EEEEEeEEEEeCC-----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHC
Confidence 5899999999932 257999999999999999999999999999999999999999999999999986432 2347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.|||+||++.+|+.+||+||+.+..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 77 ~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 77 DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE--PLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred CEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999987766666666778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++|||||++||+..|+.+++.|+++ ++ |+|+|++|||++|+..+|||+++|++|+++..|+++++.++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 89999999999999999999999999999999999998654
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-51 Score=399.48 Aligned_cols=213 Identities=28% Similarity=0.461 Sum_probs=190.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++||+|.|+... ....||+++||+|++||+++|+||+||||||||++|.|+.+||+|+|.++|+|+... ..
T Consensus 1 ~i~~~~v~k~y~~~~--~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGG--EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCC--cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367999999997532 136799999999999999999999999999999999999999999999999998642 23
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.. |++|||+||+..|.|++||.||+.+...+.+.+..+.+++++++++.+||.+ ...+++|.+|||||||||+|||||
T Consensus 79 ~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~-~~~~~~p~eLSGGqqQRVAIARAL 157 (226)
T COG1136 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED-RLLKKKPSELSGGQQQRVAIARAL 157 (226)
T ss_pred HHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChh-hhccCCchhcCHHHHHHHHHHHHH
Confidence 33 4679999999999999999999999888888766566788999999999974 344489999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+.+|++|+.||||.+||+.+.++++++++++ + .|+|||++|||.+.+. .|||++.|.+|++
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 9999999999999999999999999999986 3 4999999999998887 6999999999994
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-52 Score=401.33 Aligned_cols=227 Identities=26% Similarity=0.448 Sum_probs=204.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
.+++++||++.|+++.. ..+||+||||+|.+||++||+|++|||||||.|+|+|+.+|++|+|.++|+++.. ..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchh
Confidence 47999999999986421 2369999999999999999999999999999999999999999999999987643 2235
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+.++|||+ .|.|..||++.|.-..+.+|.+.. ++++.++|+.+||.+ +++++++.+|||||+||++|||||
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~-~~l~R~P~eLSGGQ~QRiaIARAL 156 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPP-SFLDRRPHELSGGQRQRIAIARAL 156 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCH-HHHhcCchhcChhHHHHHHHHHHh
Confidence 678899999997 689999999999988888776544 345999999999985 799999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+.+|++||||||||+||+..+.++|+++.++++ |.|+|++|||+..++.+||||++|++|++++.++.+++++...
T Consensus 157 ~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~ 234 (252)
T COG1124 157 IPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234 (252)
T ss_pred ccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc
Confidence 999999999999999999999999999998753 7799999999999999999999999999999999999987633
No 31
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-51 Score=407.27 Aligned_cols=217 Identities=28% Similarity=0.498 Sum_probs=190.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++|+++.|++ .+||+||||++++|++++|+||||||||||+|+|.|+++|++|+|.++|+++..... +
T Consensus 3 ~~i~v~nl~v~y~~------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--R 74 (254)
T ss_pred cEEEEeeeEEEECC------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--C
Confidence 47999999999974 269999999999999999999999999999999999999999999999988754322 4
Q ss_pred cceEEEcCCC---CCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQED---LLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.+|||+||.. .-|| +||+|-+.+....+ +...++.+++++++|+.+|+. +++|+++++|||||+||+.||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~--~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME--DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch--hhhCCcccccCcHHHHHHHHH
Confidence 6799999964 3355 69999998853221 123344578999999999997 599999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|++++|||||+|+|+.++..+.++|++++ +|+||+++|||++.+.++||||+.| |+++.|.|++++..+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999999975 5999999999999999999999888 578999999988643
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.6e-51 Score=430.84 Aligned_cols=221 Identities=27% Similarity=0.446 Sum_probs=203.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc--eEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS--GTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~--G~i~i~G~~i~~~~~~~ 322 (568)
.++++||+|+|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.... ..
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-~~ 77 (362)
T TIGR03258 5 GIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-PH 77 (362)
T ss_pred EEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-HH
Confidence 5899999999973 469999999999999999999999999999999999999999 99999999985432 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG--DAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC--chhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987776766667778899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++|||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999986 33 799999999999999999999999999999999999987653
No 33
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-51 Score=403.10 Aligned_cols=217 Identities=42% Similarity=0.697 Sum_probs=197.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....+.+++
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 468999999973 56999999999999999999999999999999999999999999999999886444456778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++...++..++++++++.+++. +..++++++||||||||++||+|++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL--EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666655555567889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999985 44 89999999999999999999999999999999988765
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-51 Score=406.64 Aligned_cols=219 Identities=32% Similarity=0.576 Sum_probs=196.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 235
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+..... +.+.++..+++.++++.+++. +..++++++||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR--GAEDLYPAELSGGMKKRVALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHh
Confidence 6788999999999999999999998865432 334445567788999999996 4679999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999999986 3 48999999999999999999999999999999999988754
No 35
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-51 Score=404.36 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=206.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~~ 321 (568)
.+++++|++++|+++ +.+++|+|+++++||+++|+||||||||||+++++|+++|++|+|.++|.++. .....
T Consensus 2 ~~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 368999999999752 57999999999999999999999999999999999999999999999999986 45677
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+|+++||++|++ .++.. ||.|.+.|.....|.+.++.+++++++++.+++. +++++.+.+|||||||||+||.+|
T Consensus 77 ~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~--~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLE--ELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch--hhccCCccccCCcceeeHHhhHHH
Confidence 899999999997 55554 9999999999999999888999999999999997 479999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|++++||||||||||.+++++++++++++ + |+|||++|||++++..+|||+++|++|+++.+|+|+++.+.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999974 4 68999999999999999999999999999999999888764
No 36
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-52 Score=399.79 Aligned_cols=222 Identities=31% Similarity=0.463 Sum_probs=201.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
+.+++++|+|+||+ ..|++||||++++||++||+|||||||||++|+|+|.++|++|+|.++|+|+... .+.
T Consensus 3 ~lL~v~~l~k~FGG------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGG------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCC------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 46889999999985 6899999999999999999999999999999999999999999999999999753 344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC------------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN------------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~------------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.|..|+--||...+|++|||.||+......+. ...++..+++.++|+.+||. +.+++++++||+||
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~--~~a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG--ELADRPAGNLSYGQ 154 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc--hhhcchhhcCChhH
Confidence 56788889999999999999999998644221 12356778899999999997 48999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||.|||||+.+|++|+||||.+||.|....++.++|++++ .|.||+++.|||+.+..+||||++|+.|+++++|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 999999999999999999999999999999999999999975 369999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008362 468 KELKAR 473 (568)
Q Consensus 468 ~~l~~~ 473 (568)
+++.+.
T Consensus 235 ~eV~~d 240 (250)
T COG0411 235 EEVRNN 240 (250)
T ss_pred HHHhcC
Confidence 998764
No 37
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.5e-50 Score=399.04 Aligned_cols=219 Identities=53% Similarity=0.872 Sum_probs=198.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++. .+++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~~----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG----TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC----CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 4689999999731 156999999999999999999999999999999999999999999999999986544556778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.+..+..++++++++.++|. +..++++.+||||||||++|||||+.+|++
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT--DKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999877666655445566788999999996 477899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999876679999999999999999999999999999999998875
No 38
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-50 Score=423.81 Aligned_cols=225 Identities=31% Similarity=0.492 Sum_probs=202.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+|+++||+|+|++.. .++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 mi~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHH
Confidence 488999999997311 135799999999999999999999999999999999999999999999999998642 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..|+++||+||++.+++.+|++||+.+.....+.+.++.++++.++++.+||. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS--DKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999877666665556667889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999986 33 89999999999999999999999999999999999998654
No 39
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.2e-50 Score=426.43 Aligned_cols=222 Identities=28% Similarity=0.461 Sum_probs=203.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 12 ~~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~ 84 (375)
T PRK09452 12 SPLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AE 84 (375)
T ss_pred CceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 346999999999973 56999999999999999999999999999999999999999999999999986432 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.|..+.++.+..+.+++++++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~p~~LSgGq~QRVaLARaL~~~ 162 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE--EFAQRKPHQLSGGQQQRVAIARAVVNK 162 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 578999999999999999999999987666666666677899999999997 489999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+++||||||+|||+..|+.+++.|+++ + .|+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 163 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999986 3 389999999999999999999999999999999999998654
No 40
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.2e-50 Score=424.05 Aligned_cols=220 Identities=27% Similarity=0.452 Sum_probs=199.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..++
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~~r 74 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-ARDR 74 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-HHHC
Confidence 4889999999973 56999999999999999999999999999999999999999999999999986422 3457
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
++||+||++.+|+.+|++||+.+..+.. +.+.++.+++++++++.++|. ++.++++.+||||||||++|||||+
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999876542 334455677899999999996 4889999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.+|+++||||||+|||+.+|+.+++.|+++. + |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999863 4 89999999999999999999999999999999999998654
No 41
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-50 Score=425.23 Aligned_cols=223 Identities=28% Similarity=0.452 Sum_probs=204.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++|++|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.... ..
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-~~ 89 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PY 89 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HH
Confidence 457999999999973 56999999999999999999999999999999999999999999999999986432 34
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+|+.+||+||+.+..+.++.+.++.++++.++++.++|. ++.++++.+|||||||||+|||||+.+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ--EFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999987766666667778899999999997 488999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|++++|||||+|||+..|+.+++.|+++ + .|.|+|++|||++|+..+|||+++|++|++++.|+++++..+.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999875 4 4899999999999999999999999999999999999987543
No 42
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.5e-50 Score=397.04 Aligned_cols=217 Identities=34% Similarity=0.604 Sum_probs=195.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|+++. +..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 478999999997421 012699999999999999999999999999999999999999999999999998655556678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++||||++.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME--ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666655556667889999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+++|||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|++++.|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999986 46899999999999999999999999999998654
No 43
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-51 Score=405.77 Aligned_cols=234 Identities=28% Similarity=0.431 Sum_probs=213.2
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 008362 244 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~------------------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~ 305 (568)
..|+++|++|.||++.. .+....++|+||+|++|||+.|+|-+|||||||+|++.++.+||+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 35899999999986411 123457899999999999999999999999999999999999999
Q ss_pred eEEEECCeeCCC-c---HHHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 008362 306 GTAYVQGLDIRT-D---MDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380 (568)
Q Consensus 306 G~i~i~G~~i~~-~---~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 380 (568)
|+|.++|.|+.. + ..++ |+++++|||+..|+|..||.||..|+..++|.++++.++++.++|+.+||. ++.++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~--~~~~~ 160 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYADK 160 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch--hhhhc
Confidence 999999999964 2 2233 367999999999999999999999999999999999999999999999997 59999
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++|||||||||.|||||+.+|+++++|||+|+|||--|.++.+.|.++. -++||+++|||++||.++.|||+||++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd 240 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence 999999999999999999999999999999999999999999999998863 389999999999999999999999999
Q ss_pred CEEEeecCHHHHHHhcCCcEE
Q 008362 459 GSLQCIGNPKELKARYGGSYV 479 (568)
Q Consensus 459 G~l~~~g~~~~l~~~~~~~~~ 479 (568)
|+++..|+|+|+..+....|+
T Consensus 241 G~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 241 GEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred CeEEEeCCHHHHHcCccHHHH
Confidence 999999999999877666664
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.9e-50 Score=396.10 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=188.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++++|++. .+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGG----HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCC----CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 47899999999631 24699999999999999999999999999999999999999999999999988531 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+++. +..++++.+||||||||++|||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 77 FLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE--GKAHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999876655544445567889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999986 4589999999999999999999999999974
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-50 Score=395.60 Aligned_cols=211 Identities=31% Similarity=0.506 Sum_probs=189.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-~~~~~ 73 (213)
T cd03259 1 LELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP-PERRN 73 (213)
T ss_pred CeeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc-hhhcc
Confidence 468999999963 56999999999999999999999999999999999999999999999999886422 24578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE--GLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998865554444445566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|+++ + +|+|||++||++++++.+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999998765
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-50 Score=424.35 Aligned_cols=219 Identities=27% Similarity=0.456 Sum_probs=200.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|+|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~ 75 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAER 75 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHC
Confidence 5899999999973 56999999999999999999999999999999999999999999999999986422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+|+.+||+||+.+....++.+.++.+++++++++.++|. +..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred CEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999877666655566677899999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.+++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++..
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999986 43 8999999999999999999999999999999999998854
No 47
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.1e-50 Score=421.21 Aligned_cols=208 Identities=27% Similarity=0.431 Sum_probs=192.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh----hcceEEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI----YTSMGVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~----r~~ig~~~Q~~~l~~~ 338 (568)
+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++.. ..... |+++|||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 579999999999999999999999999999999999999999999999999864 33333 6789999999999999
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
+||+||+.+.....+.+.++..+++.++++.+||. .+.++++.+||||||||++|||||+.+|+++||||||+||||.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~--~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE--EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99999999987777776667778899999999996 4899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++.+.+.+.++. .|+|||++|||++++..+||||++|++|+++..|+++++.++
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999863 489999999999999999999999999999999999998654
No 48
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-50 Score=396.96 Aligned_cols=224 Identities=30% Similarity=0.481 Sum_probs=198.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H---H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M---D 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~---~ 320 (568)
+|+++|+++.|+++. +.+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .
T Consensus 1 ~i~~~~l~~~~~~~~--~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTG--GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCC--CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 478999999997420 012799999999999999999999999999999999999999999999999998542 1 2
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+....++....+..+.+.++++.+++. +..++++.+||||||||++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE--DKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999998866555544445566789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999986 44 8999999999999999999999999999999999888743
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1e-49 Score=396.34 Aligned_cols=218 Identities=33% Similarity=0.576 Sum_probs=195.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~r 323 (568)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 468999999973 5699999999999999999999999999999999999999999999999987542 22 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+....++....+..++++++++.+++. +..++.+++||||||||++|||||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT--HLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999999865555544445556788999999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999986 45899999999999999999999999999999999988764
No 50
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-50 Score=398.70 Aligned_cols=219 Identities=32% Similarity=0.465 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++||+|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 74 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP-VQER 74 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccc
Confidence 4889999999973 56999999999999999999999999999999999999999999999999875422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+|++||+.+.....+. ..++..++++++++.++|. +..++++.+||||||||++|||||+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD--WLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 799999999999999999999886544332 2233456788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999986 3 38999999999999999999999999999999999988754
No 51
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-49 Score=407.38 Aligned_cols=226 Identities=31% Similarity=0.496 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~ 321 (568)
.++++||+|.|++..+ ..+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++... ...
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4889999999974211 024699999999999999999999999999999999999999999999999998642 245
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++++||+||++ .++ ..|++||+.+.....+.++++..++++++++.+||...+..++++++||||||||++|||||
T Consensus 81 ~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred HhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH
Confidence 678999999986 344 47999999987666666666677789999999999521368999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999986 43 8999999999999999999999999999999999998754
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2e-49 Score=421.56 Aligned_cols=226 Identities=25% Similarity=0.427 Sum_probs=201.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||+|.|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. ...+.
T Consensus 2 ~~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 36999999999973 579999999999999999999999999999999999999999999999999865 44567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc--CC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--NL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++++||+||++.+++.+|++||+.+....+ .. ..++.+++++++++.+++. +..++++.+||||||||++||||
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~--~~~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA--QFADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHH
Confidence 788999999999999999999998753211 11 1344567889999999996 48899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH------HH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE------LK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~------l~ 471 (568)
|+++|+++||||||+|||+.++++++++|+++. +|+|||++||+++++.++|||+++|++|+++..|++++ +.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~ 233 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLR 233 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHH
Confidence 999999999999999999999999999999874 68999999999999999999999999999999999997 55
Q ss_pred HhcCCc
Q 008362 472 ARYGGS 477 (568)
Q Consensus 472 ~~~~~~ 477 (568)
+.|+..
T Consensus 234 ~~~~~~ 239 (402)
T PRK09536 234 AAFDAR 239 (402)
T ss_pred HHhCCc
Confidence 666543
No 53
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.2e-49 Score=396.78 Aligned_cols=219 Identities=31% Similarity=0.527 Sum_probs=194.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-hh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR-IY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~-~r 323 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ... .+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 468999999973 5699999999999999999999999999999999999999999999999988642 222 35
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNL----------KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----------~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
+.+||+||++.+++.+|++||+.+.....+. ...+..++++++++.+++. +..++++++||||||||+
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA--DLADRPAGELSYGQQRRL 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc--chhhCChhhCCHHHHHHH
Confidence 6799999999999999999999886544321 1234456788999999996 478999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999999864 68999999999999999999999999999999999988753
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.3e-49 Score=395.05 Aligned_cols=221 Identities=30% Similarity=0.477 Sum_probs=198.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++++|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999988643334456
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|+||++.+++.+|++||+.+....++.+.++..+++.++++.+|+. +..++++.+||||||||++|||||+.+|+
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA--ERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999988999999998876665544445566788999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++||||||+|||+.+++.+++.|+++. +|+|||++||++++++. |||+++|++|++++.|+++++.+.+
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGAL 223 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHc
Confidence 999999999999999999999999863 48999999999999985 9999999999999999999887654
No 55
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-49 Score=421.33 Aligned_cols=228 Identities=25% Similarity=0.408 Sum_probs=201.6
Q ss_pred CeEEEEeEEEEcCCCCC------------------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc
Q 008362 244 HAIISDNLRKIYPGRDG------------------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS 305 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~------------------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~ 305 (568)
.+|+++||+|.||.... .+...+++|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 36888999998886321 012348999999999999999999999999999999999999999
Q ss_pred eEEEECCeeCCCc-HHH----hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc
Q 008362 306 GTAYVQGLDIRTD-MDR----IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK 380 (568)
Q Consensus 306 G~i~i~G~~i~~~-~~~----~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 380 (568)
|+|+++|+++... ... .++++||+||++.+++.+|++||+.+....++.+.++.++++.++++.+||. ++.++
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~--~~~~~ 160 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE--NYAHS 160 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--hhhhc
Confidence 9999999998642 221 2357999999999999999999999887776666566667889999999996 47899
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++||||||||++|||||+.+|+++||||||+||||.+++.+++.|+++ + .|+|||++||+++++..+|||+++|++
T Consensus 161 ~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~ 240 (400)
T PRK10070 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQN 240 (400)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999986 3 489999999999999999999999999
Q ss_pred CEEEeecCHHHHHHh
Q 008362 459 GSLQCIGNPKELKAR 473 (568)
Q Consensus 459 G~l~~~g~~~~l~~~ 473 (568)
|+++..|+++++...
T Consensus 241 G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 241 GEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEecCCHHHHHhC
Confidence 999999999988654
No 56
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-49 Score=390.23 Aligned_cols=211 Identities=37% Similarity=0.646 Sum_probs=191.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|.|++ +.+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 i~~~~~~~~~~~------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 468999999963 46999999999999 99999999999999999999999999999999999886533556788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG--DRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH--HHHhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876665554445567789999999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998766799999999999999999999999999998764
No 57
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-49 Score=413.04 Aligned_cols=233 Identities=24% Similarity=0.357 Sum_probs=203.8
Q ss_pred CCeEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 243 SHAIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
.++|+++||+|.|+.+.+ .+.+.+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999974211 0135799999999999999999999999999999999999999999999999998
Q ss_pred CCc----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc--CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 316 RTD----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK--NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 316 ~~~----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
... ....|++++|+||++ .+++.+|+.||+.+..... +.+.++.++++.++++.++|.+ +..++++++|||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~-~~~~~~p~~LSg 164 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP-NLINRYPHEFSG 164 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHhcCCcccCCH
Confidence 542 234577899999997 6899999999998865443 3455666778899999999953 468999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
|||||++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.|
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g 244 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELG 244 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999863 3899999999999999999999999999999999
Q ss_pred CHHHHHHhcCC
Q 008362 466 NPKELKARYGG 476 (568)
Q Consensus 466 ~~~~l~~~~~~ 476 (568)
+++++.+...+
T Consensus 245 ~~~~i~~~~~~ 255 (331)
T PRK15079 245 TYDEVYHNPLH 255 (331)
T ss_pred CHHHHHcCCCC
Confidence 99998765433
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-49 Score=405.62 Aligned_cols=225 Identities=23% Similarity=0.378 Sum_probs=198.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
+|+++|+++.|++... ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ..
T Consensus 1 mi~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 4889999999974210 11369999999999999999999999999999999999999999999999999842 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...|+.+||+||++ .+++ .|+.||+.|.....+.+.++.++++.++++.++|.+ ++.++++.+||||||||++||+
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD-EFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhccCCcccCCHHHHHHHHHHH
Confidence 45678999999986 5666 599999998765556666667778999999999952 3679999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++++++++ +|+|||++|||++++..+||||++|++|++++.|+++++..
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999864 59999999999999999999999999999999999999854
No 59
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-49 Score=391.47 Aligned_cols=214 Identities=29% Similarity=0.455 Sum_probs=191.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++.. ..+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~ 74 (220)
T cd03293 1 LEVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPD 74 (220)
T ss_pred CeEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCc
Confidence 46899999997411 11579999999999999999999999999999999999999999999999998752 3567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++|||||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS--GFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999876655554455567889999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE--CCEEEeecCH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNP 467 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~--~G~l~~~g~~ 467 (568)
+||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|+ +|+++..++.
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999986 4 48999999999999999999999999 7999988764
No 60
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.6e-49 Score=396.35 Aligned_cols=221 Identities=28% Similarity=0.481 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 317 (568)
+++++||+|+|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYGE------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEECC------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 4789999999973 46999999999999999999999999999999999999998 9999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++ +|++||+.+....++. +.++..++++++++.+|+.+. +..++++++||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRL 153 (247)
T ss_pred cchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHH
Confidence 23456788999999999998 9999999986655542 334556778999999999510 257899999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999988754
No 61
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.5e-49 Score=393.89 Aligned_cols=215 Identities=27% Similarity=0.472 Sum_probs=190.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEECCeeCCCc--
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTD-- 318 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~~G~i~i~G~~i~~~-- 318 (568)
|+++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 468999999973 46999999999999999999999999999999999999 99999999999987542
Q ss_pred -HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCccccc--CCCCChhHHHHHH
Q 008362 319 -MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQ--AGKYSGGMKRRLS 394 (568)
Q Consensus 319 -~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~--~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.++ .+|++||+.+.....+...+ +.+++++++++.+|+.+ ..+++ +.+||||||||++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD--EVKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh--HHhccCCcccCCHHHHHHHH
Confidence 345677899999999888 78999999886655543332 34567889999999963 55666 5999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|||||+.+|+++||||||+|||+.+++.++++|++.++.+|||++||+++++..+|||+++|++|++++.|++++
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987434999999999999999999999999999999998765
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.7e-49 Score=389.78 Aligned_cols=211 Identities=28% Similarity=0.481 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~-~~~~~ 73 (213)
T cd03301 1 VELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP-PKDRD 73 (213)
T ss_pred CEEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC-cccce
Confidence 468999999973 46999999999999999999999999999999999999999999999999885422 22467
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE--HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--HHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876655555555667888999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|++. + +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999986 3 4899999999999999999999999999998875
No 63
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-49 Score=401.94 Aligned_cols=220 Identities=29% Similarity=0.444 Sum_probs=196.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++.. .....
T Consensus 3 ~~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred ceEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999963 2469999999999999999999999999999999999999999999999999854 33455
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+..+|+.||+.+.....+.+..+.+++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW--DFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 778999999963 344579999999865545555555667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++.++|||+++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999986 4589999999999999999999999999999999998764
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-49 Score=395.33 Aligned_cols=220 Identities=32% Similarity=0.509 Sum_probs=193.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++||++.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999973 14699999999999999999999999999999999999999999999999988542 344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
.++.+||+||++.+++.+|++||+.+... +.+...++..+++.++++.+++. +..++++.+||||||||+
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL--DKAYQRADQLSGGQQQRV 153 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh--hhhCCCcccCCHHHHHHH
Confidence 67789999999999999999999986432 11222234456788899999996 478999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999999986 3 4899999999999999999999999999999999998874
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 3
No 65
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-49 Score=395.43 Aligned_cols=222 Identities=33% Similarity=0.539 Sum_probs=197.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 468999999973 1469999999999999999999999999999999999999999999999998854 3345677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.++....+...++..+++.++++.+++.+.+..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999998766655444455667889999999962026789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.+++.|++. ++ |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999986 33 8999999999999999999999999999999999988754
No 66
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-49 Score=405.99 Aligned_cols=224 Identities=27% Similarity=0.425 Sum_probs=197.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMD 320 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~ 320 (568)
++++||+|+|++..+ ..+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 889999999974211 02469999999999999999999999999999999999999999999999999852 234
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
..++.+|||||++ .+++ .|++||+.+.....+.+.++..++++++++.++|.+ ...++++.+||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lAra 159 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE-ELLARSPFELSGGQMRRVAIAGV 159 (290)
T ss_pred HHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh-hhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999986 4664 699999998765556666666678899999999962 36799999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+||||++|++|++++.|+++++.+
T Consensus 160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999986 3 38999999999999999999999999999999999988754
No 67
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-49 Score=393.97 Aligned_cols=220 Identities=27% Similarity=0.436 Sum_probs=196.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....
T Consensus 1 ~l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 4789999999973 569999999999999999999999999999999999999999999999999864 2235
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+... ..+...++..+++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA--ERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred HhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh--HHHhcChhhcCHHHHHHHHHHHHHh
Confidence 57789999999999999999999987532 23444445566788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
No 68
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-49 Score=387.11 Aligned_cols=209 Identities=32% Similarity=0.567 Sum_probs=189.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNR 71 (210)
T ss_pred CEEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHcc
Confidence 468999999963 569999999999999999999999999999999999999999999999988743 45678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.+....++.+..+.+++++++++.+++. +..++++.+||||||||+++|+||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS--EYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred EEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh--HHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999999876666555555667889999999996 478899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
++|||||+|||+.+++.+++.|++. ++|+|||++||+.+++..+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999986 46899999999999999999999999999998654
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.8e-49 Score=390.98 Aligned_cols=211 Identities=30% Similarity=0.457 Sum_probs=185.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH----HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~~ 321 (568)
++++||++.|++.. ..+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 l~~~~l~~~~~~~~--~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGG--EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCC--cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHH
Confidence 46899999997421 0156999999999999999999999999999999999999999999999999885421 12
Q ss_pred -hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 -IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 -~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|++||+.+....++....+.+++++++++.+||. +..++++++||||||||++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~ 156 (218)
T cd03255 79 FRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG--DRLNHYPSELSGGQQQRVAIARALA 156 (218)
T ss_pred HHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc--hhhhcChhhcCHHHHHHHHHHHHHc
Confidence 3568999999999999999999999876665544444556789999999996 3679999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++ +|||+++|++|++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 157 NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999986 4 4899999999999998 9999999999974
No 70
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.4e-49 Score=393.19 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~ 322 (568)
+++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. ..
T Consensus 2 ~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 5899999999973 4699999999999999999999999999999999999999999999999988542 22 23
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc--------CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK--------NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA--DEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 467999999999999999999998854321 112233456789999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||||++.+|++++|||||+|||+.+++.++++|+++.+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999999999999766899999999999999999999999999999999988874
No 71
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-49 Score=402.97 Aligned_cols=225 Identities=25% Similarity=0.410 Sum_probs=197.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4889999999973210 01469999999999999999999999999999999999999999999999998853 13
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...++.+||+||++ .++ .+|++||+.+.....+...++..++++++++.+||.. +..++++++||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrl~lar 158 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE-DLISKSPFELSGGQMRRVAIAG 158 (287)
T ss_pred HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhhCCcccCCHHHHHHHHHHH
Confidence 45667899999996 355 5799999987655455555556678899999999952 3689999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 159 VMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 69999999999999999999999999999999999998754
No 72
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.1e-49 Score=387.24 Aligned_cols=209 Identities=28% Similarity=0.466 Sum_probs=187.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYPG-----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeCC-----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 4789999999952 24699999999999999999999999999999999999999999999999998542 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.+||+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE--HKADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999876555544445567889999999996 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
.+|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999986 458999999999999999999999999985
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4e-49 Score=385.76 Aligned_cols=207 Identities=32% Similarity=0.596 Sum_probs=187.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|+|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .+.++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~ 73 (208)
T cd03268 1 LKTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRR 73 (208)
T ss_pred CEEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhh
Confidence 468999999963 5799999999999999999999999999999999999999999999999987543 455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++....+. .+++++++++.+++. +..++++++||||||||+++|||++.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 74 IGALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLK--DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred EEEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCH--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999987654432 235678899999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999864 6899999999999999999999999999998764
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-49 Score=400.86 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=199.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||++.|++.. .+.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQ---EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred ceEEEEeEEEEcCCCC---cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3699999999997421 2459999999999999999999999999999999999999999999999999864 34456
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++++||+||++ .+++.+|++||+.+.....+.+.++..++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 80 RHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ--DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred HhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999997 4677789999999866555666666677899999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++. .|||+++|++|+++..|+++++..
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999986 33 899999999999995 799999999999999999988754
No 75
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-49 Score=401.66 Aligned_cols=225 Identities=24% Similarity=0.414 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. ..
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3889999999963210 02469999999999999999999999999999999999999999999999999853 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..+|+.||||||++ .+++ .|++||+.+.....+.+.++..++++++++.+||.. +..++++.+||||||||++|||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR-DVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45778999999986 5666 499999998765556566666778899999999952 3678999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++++++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999863 48999999999999999999999999999999999988754
No 76
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-48 Score=406.32 Aligned_cols=226 Identities=22% Similarity=0.374 Sum_probs=198.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
++|+++|+++.|++... ..+.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++..
T Consensus 20 ~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 57999999999974210 12469999999999999999999999999999999999999999999999998743
Q ss_pred -----------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC
Q 008362 318 -----------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK 384 (568)
Q Consensus 318 -----------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~ 384 (568)
.....|+.+|||||++ .+++. |++||+.+.....+.+.++..++++++++.++|.+ +..++.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~~ 176 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD-SYLERSPFG 176 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh-hHhcCCccc
Confidence 2345678999999987 57764 99999987654445555566678899999999952 368999999
Q ss_pred CChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 385 YSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 385 LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|++++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 469999999999999999999999999999999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++..
T Consensus 257 ~g~~~~~~~ 265 (320)
T PRK13631 257 TGTPYEIFT 265 (320)
T ss_pred eCCHHHHhc
Confidence 999998754
No 77
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.2e-49 Score=415.48 Aligned_cols=209 Identities=27% Similarity=0.438 Sum_probs=189.4
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe----eCCC-cH---HHhh-cceEEEcCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL----DIRT-DM---DRIY-TSMGVCPQED 333 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~----~i~~-~~---~~~r-~~ig~~~Q~~ 333 (568)
.+.+++|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+ ++.. .. .+.| +++||+||++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 467999999999999999999999999999999999999999999999997 4432 11 2233 5799999999
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
.+++.+|++||+.+.....+.++.+.++++.++++.+||. ++.++++.+||||||||++|||||+.+|+++||||||+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~--~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts 193 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA--QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFS 193 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 9999999999999887666766666677899999999996 48899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 414 GLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 414 gLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||.+++.+++.|.++. .|+|||++|||++++.++||||++|++|+++..|+++++..+
T Consensus 194 ~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 194 ALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999863 389999999999999999999999999999999999998654
No 78
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-49 Score=408.27 Aligned_cols=234 Identities=22% Similarity=0.329 Sum_probs=204.1
Q ss_pred CeEEEEeEEEEcCCCCC----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-
Q 008362 244 HAIISDNLRKIYPGRDG----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD- 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~- 318 (568)
++|+++||+|.|+.+.+ ...+.||+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 47999999999974211 0125799999999999999999999999999999999999999999999999998542
Q ss_pred ---HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 319 ---MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
....|+++||+||++ .+.+.+|+.+++....... +...++.++++.++++.+||.+ ...++++++||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP-EHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh-HHhcCCCccCCHHHHHH
Confidence 234677899999997 6899999999998755543 3455566678999999999963 46799999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999863 489999999999999999999999999999999999998
Q ss_pred HHhcCCcE
Q 008362 471 KARYGGSY 478 (568)
Q Consensus 471 ~~~~~~~~ 478 (568)
.+...+.|
T Consensus 243 ~~~p~hpy 250 (327)
T PRK11308 243 FNNPRHPY 250 (327)
T ss_pred hcCCCCHH
Confidence 76544433
No 79
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-49 Score=405.10 Aligned_cols=225 Identities=26% Similarity=0.376 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------- 317 (568)
.|+++||+++|++... ....+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 4889999999974210 12369999999999999999999999999999999999999999999999886521
Q ss_pred ------------------cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 318 ------------------DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 318 ------------------~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
.....++.+||+||++ .++ ..||+||+.+.....+.+.++..+++.++++.+||.+ ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~ 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-SY 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-hh
Confidence 2345678899999985 455 4699999998766667666677788999999999962 47
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
.++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999986 45999999999999999999999999
Q ss_pred ECCEEEeecCHHHHHH
Q 008362 457 VDGSLQCIGNPKELKA 472 (568)
Q Consensus 457 ~~G~l~~~g~~~~l~~ 472 (568)
++|++++.|+++++.+
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 239 KDGKIIKDGDTYDILS 254 (305)
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
No 80
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7e-49 Score=387.61 Aligned_cols=216 Identities=28% Similarity=0.455 Sum_probs=191.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-Hhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-RIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~~r 323 (568)
|+++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... .. ..+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999988542 22 235
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++.+++.+|++||+.+.....+ ..+..+++.++++.+ ++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhh--hhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 679999999999999999999998755443 233445677788888 465 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++++|||||+|||+.+++.++++|++.. +|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999864 6899999999999999999999999999999999988764
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.3e-48 Score=397.29 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~ 319 (568)
++|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999987532 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...++.+||+||++.+++.+|+.||+.+..... +.+.++.++++.++++.+++. +..++++++||||||||++||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR--GAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHH
Confidence 234678999999999999999999998754332 233334456788899999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999986 33 8999999999999999999999999999999999988765
No 82
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-48 Score=392.97 Aligned_cols=220 Identities=28% Similarity=0.421 Sum_probs=196.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 318 (568)
+++++||++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 6899999999973 4699999999999999999999999999999999999999999999999987531
Q ss_pred ---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 ---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.+++.+|++||+.+... .++...++..+++.++++.+|+. +..++++++||||||||++
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA--GKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred hhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--chhhCChhhCChHHHHHHH
Confidence 23456789999999999999999999987533 23334444556788999999996 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.++++|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999864 58999999999999999999999999999999999988754
No 83
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=397.68 Aligned_cols=222 Identities=26% Similarity=0.428 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+++++|++|.|++ .+.+++|+||++++||++||+|+||||||||+|+|+|+.+|++|+|.++|+++.. .....
T Consensus 2 ~~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV 76 (277)
T ss_pred ceEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 36899999999963 2459999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+...|+.||+.+.....+...++..++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE--ELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999973 233579999998765544555555667789999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++++++++ + |+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999999999999999999999999998864
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-48 Score=399.24 Aligned_cols=221 Identities=27% Similarity=0.435 Sum_probs=196.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+|+++|++++|++ ++.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 7999999999962 2569999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrl~laraL~ 157 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVLV 157 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhhCCcccCCHHHHHHHHHHHHHH
Confidence 6788999999873 233479999998865544555556667889999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|+++. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 ~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 158 MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999863 3 8999999999999999999999999999999999998754
No 85
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-48 Score=387.14 Aligned_cols=219 Identities=24% Similarity=0.384 Sum_probs=191.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-H--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-D-- 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~-- 320 (568)
++++++||+|.|+++. ..+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 4 ILLQCDNLCKRYQEGS--VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred ceEEEEeEEEEcCCCC--cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 4699999999997421 0146999999999999999999999999999999999999999999999999985421 1
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 -~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.. ++.+||+||++.+++.+|++||+.+.....+...++.++++.++++.+||. +..++++.+||||||||++||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE--HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 22 367999999999999999999999865554444455567889999999996 47889999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
++.+|+++||||||+|||+.+++.++++|++. + +|+|||++||++++++. +||+++|++|++++.++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEecc
Confidence 99999999999999999999999999999986 3 58999999999999987 479999999999988763
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=8.2e-49 Score=392.51 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=192.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYPN-----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecCC-----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 4789999999962 24699999999999999999999999999999999999999999999999987531 12
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGR--------LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..++.+||+||++.+++.+|++||+.+... +.+...++..+++.++++.+++. +..++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qr 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA--DKAYQRADQLSGGQQQR 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHH
Confidence 356789999999999999999999976321 11112234456788999999996 47899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++.++||++++|++|++++.|+++++
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999999986 4 389999999999999999999999999999999998876
No 87
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.4e-48 Score=385.77 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=189.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~ 320 (568)
+++++|++|.|++ ++.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 1 MIRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred CEEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 4789999999942 24699999999999999999999999999999999999999999999999988541 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
..++.++|+||++.+++.+|++||+.+....++.+.++..++++++++.+++. +..++++++||||||||++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL--DKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCCchhCCHHHHHHHHHHHHHH
Confidence 35678999999999888999999999876555555455566788999999996 3689999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
.+|+++||||||+|||+.+++.++++|++. ++|+|||++||+++++..+|||+++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999986 458999999999999999999999999999853
No 88
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-49 Score=376.89 Aligned_cols=222 Identities=29% Similarity=0.453 Sum_probs=196.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
++++++||+..||+ .+||++|||++++|||++|+|+||||||||+|+|+|+.+|.+|+|.++|+|+.. ..+.
T Consensus 2 ~mL~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 47999999999984 689999999999999999999999999999999999999999999999999975 3456
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.|..|+||||...+|+.|||+|||.+.+..+.. ++..+..++++.+.+--- ++.++++.++|||||||.|+|||||+.
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~L-ker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRL-KERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhH-HHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 788999999999999999999999987554321 111122266666665422 257899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++++|||||.||-|.-.+++.+.|++++ + |.||+++.++...|.+++||.++|++|+++..|+.++|.+.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999975 4 78999999999999999999999999999999999998753
No 89
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-48 Score=398.59 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=198.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~ 322 (568)
++++++||++.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++... ....
T Consensus 4 ~~l~~~~l~~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDA----ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 469999999999631 25699999999999999999999999999999999999999999999999998642 3455
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++ .++..+|+.||+.+.....+.+.++.+++++++++.+||. +..++++.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME--DFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 67899999997 3667789999999876655555566667899999999997 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|+++. + |+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 158 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 3 8999999999999975 99999999999999999988754
No 90
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-48 Score=393.19 Aligned_cols=223 Identities=26% Similarity=0.457 Sum_probs=197.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 347999999999973 4699999999999999999999999999999999999875 89999999998753
Q ss_pred c---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ~---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
. ....++.+||+||++.+++ +|++||+.+.....+.+.++.+++++++++.+++.. .+..++++.+||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH
Confidence 1 2345678999999999888 899999998765555544445567888999998831 135688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987668999999999999999999999999999999999998864
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-49 Score=399.45 Aligned_cols=219 Identities=28% Similarity=0.427 Sum_probs=195.4
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH---h
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR---I 322 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~---~ 322 (568)
.++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ... .
T Consensus 26 ~~~~~~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQ------TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCC------ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 46799999973 5799999999999999999999999999999999999999999999999988542 111 2
Q ss_pred -hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 -r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++++||+||++.+++.+|++||+.+.....+....+..+++.++++.++|. +..++++++||||||||++|||||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE--GWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 357999999999999999999999876555544445566788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+||++++|++|++++.|+++++.+.
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999986 3 389999999999999999999999999999999999988653
No 92
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-48 Score=383.79 Aligned_cols=209 Identities=26% Similarity=0.434 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 468999999963 24699999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|++||+.+....++...++.+++++++++.+++. +..++++.+||||||||++|||||+.
T Consensus 76 ~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 76 LRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS--HKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred HHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999876655544455567889999999996 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|+++||||||+|||+.+++.+++.|++. ++|+|||++||++++++.+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999986 4689999999999999999999999999974
No 93
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=390.10 Aligned_cols=219 Identities=31% Similarity=0.546 Sum_probs=196.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~ 322 (568)
+++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++... ....
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKG------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 6899999999973 5699999999999999999999999999999999999999999999999988542 2334
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+..... +...++.+++++++++.+++. +..++++++||||||||++||||++.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE--HLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH--HHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 678999999999999999999998765443 233344556788999999996 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+++++++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999998864 5899999999999999999999999999999999998874
No 94
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-48 Score=396.98 Aligned_cols=220 Identities=25% Similarity=0.394 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~ 322 (568)
+++++|++|.|++ ++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++... ....
T Consensus 1 ml~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 4789999999963 24699999999999999999999999999999999999999999999999988542 3456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. .+...|++||+.+.....+.+.++..++++++++.++|. +..++++++||||||||++|||||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE--KYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--HHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 778999999975 355689999998866555555556667889999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++.+++++ +|+|||++||++++++ .|||+++|++|++++.|+++++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999864 5999999999999996 599999999999999999988754
No 95
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-48 Score=391.06 Aligned_cols=223 Identities=26% Similarity=0.414 Sum_probs=196.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
.+++++||+|.|++ +++++|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGS------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCC------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 36899999999973 4699999999999999999999999999999999999987 49999999999852
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++++||+||++.+++.+|+.||+.+....++. +.++..++++++++.+++.. ....++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 2345677899999999999999999999886544432 23344567888999999842 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 237 ~ 237 (253)
T PRK14267 237 E 237 (253)
T ss_pred h
Confidence 4
No 96
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-48 Score=389.79 Aligned_cols=222 Identities=25% Similarity=0.398 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-c
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-~ 318 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 5899999999973 4699999999999999999999999999999999999874 79999999999854 3
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++.+++.+|++||+.+.....+. ..++..+++.++++.++|.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 156 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLC 156 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHH
Confidence 445678899999999888899999999886544332 23445567889999999852 12468999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||||+.+|++++|||||+|||+.+++.++++|++.++|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 999999999999999999999999999999999987668999999999999999999999999999999999988754
No 97
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-48 Score=390.25 Aligned_cols=222 Identities=25% Similarity=0.411 Sum_probs=195.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
+.|+++|++++|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 47999999999973 469999999999999999999999999999999999964 689999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 23456788999999998888 59999998865554432 2344567888999999842 124688899999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999988754
No 98
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-48 Score=382.86 Aligned_cols=208 Identities=32% Similarity=0.525 Sum_probs=183.4
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++|++|.|++. .+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .....++.
T Consensus 1 ~~~~l~~~~~~~----~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDG----ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCC----CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 368999999731 2569999999999999999999999999999999999999999999999998854 33456788
Q ss_pred eEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 326 MGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 326 ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++|+||++. .++.+|++||+.+.....+...++.+++++++++.+++. +..++++++||||||||++|||||+.+|+
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE--GLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999975 356789999998865544444445556788999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||||+|||+.+++.+++.|++.+ +|+|||++||++++++.+|||+++|++|+
T Consensus 155 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999864 58999999999999999999999999985
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-48 Score=395.37 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++||+|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 1 ml~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQD------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcCC------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 4789999999973 469999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEEcCCCCC-CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLL-WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l-~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+ +...|+.||+.+.....+...++..++++++++.+++. ++.++++.+||||||||++|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ--HFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred HHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--hHhcCCchhCCHHHHHHHHHHHHHH
Confidence 67789999999753 34468999998865555554455566788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999864 58999999999999999999999999999999999988754
No 100
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.1e-48 Score=390.32 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=196.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
..++++||++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 36999999999973 579999999999999999999999999999999999999999999999998742
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 318 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 318 --------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.....++.+||+||++.+++.+|++||+.+.. ...+....+.++++.++++.+|+.+ ...++++.+||||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~G 156 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDE-RAQGKYPVHLSGG 156 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHH
Confidence 12345778999999999999999999998643 2333344455677889999999963 2248899999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|++
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAP 236 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999864 599999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 237 ~~~~~ 241 (257)
T PRK10619 237 EQLFG 241 (257)
T ss_pred HHhhh
Confidence 88754
No 101
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.2e-48 Score=381.77 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=179.5
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
+++|++|+|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...++++
T Consensus 1 ~~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSI 73 (205)
T ss_pred CcccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcce
Confidence 36899999963 1469999999999999999999999999999999999999999999999998753 3456789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 327 GVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 327 g~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
||+||++. .+..+|++||+.++....+ ...+++.++++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLY--ALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCc--hhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999974 2345799999988654332 1235688999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
++|||||+|||+.+++.++++|++. ++|+|||++||++++++.+|||+++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999986 56899999999999999999999999999974
No 102
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-48 Score=390.48 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
.+++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 47999999999973 4699999999999999999999999999999999999997 59999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+.....+. ...+.++++.++++.+++.+ .+..++++++||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR 158 (254)
T ss_pred cccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH
Confidence 23456788999999998885 8999999986554443 23344567888999998731 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999999999999999999999999999865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 239 ~ 239 (254)
T PRK14273 239 N 239 (254)
T ss_pred C
Confidence 3
No 103
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-48 Score=405.03 Aligned_cols=232 Identities=19% Similarity=0.285 Sum_probs=199.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEECCeeCCCc-H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRTD-M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~~G~i~i~G~~i~~~-~ 319 (568)
+++++||++.|+... +...||+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++... .
T Consensus 3 ~L~v~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDES--APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCCC--ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 589999999997531 12569999999999999999999999999999999999997 4899999999998542 2
Q ss_pred H---Hhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChhHHH
Q 008362 320 D---RIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~---~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~LSgG~kq 391 (568)
+ +.| +.+||+||++ .+++.+|+.+++....... +...++.++++.++++.+||.+ ....++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 2 222 4799999997 5889999999887655443 4445566778999999999963 12468999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|++|||||+.+|++||+||||+|||+.++++++++|++++ .|.|+|++|||++++..+||||++|++|++++.|++++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~ 240 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999863 48999999999999999999999999999999999999
Q ss_pred HHHhcCCcE
Q 008362 470 LKARYGGSY 478 (568)
Q Consensus 470 l~~~~~~~~ 478 (568)
+.+...+.|
T Consensus 241 ~~~~p~hpy 249 (326)
T PRK11022 241 IFRAPRHPY 249 (326)
T ss_pred HhhCCCChH
Confidence 977654444
No 104
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-48 Score=396.32 Aligned_cols=226 Identities=31% Similarity=0.454 Sum_probs=198.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++|++|+|++..+..++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 579999999999742111135699999999999999999999999999999999999999999999999998542 345
Q ss_pred hhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+||+||++. ++ ..|+.||+.+.....+.+..+.+++++++++.+||. +..++++.+||||||||++|||||
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LS~G~~qrv~laral 159 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY--EYRRHAPHLLSGGQKQRVAIAGIL 159 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHH
Confidence 6788999999974 44 469999999876555555556677889999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++.. |||+++|++|++++.|+++++.+.
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999986 3 48999999999999986 999999999999999999998654
No 105
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-48 Score=390.29 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=195.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 5899999999973 469999999999999999999999999999999999999999999999998754 334456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
+.+||+||++.+++.+|++||+.+.....+...++.+++++++++.+++. +..++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGe~qrv~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA--HLAGRDYPQLSGGEQQRVQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 78999999998888899999998864433333334456788999999996 4789999999999999999999999
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ---~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.+.++|+++. +|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999863 58999999999999999999999999999999999887643
No 106
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-48 Score=386.25 Aligned_cols=219 Identities=25% Similarity=0.414 Sum_probs=195.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------- 317 (568)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 5889999999973 469999999999999999999999999999999999999999999999998731
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.....++++||+||++.+++.+|++||+.+ .....+...++..+++.++++.+|+. +..++++.+||||||||++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK--PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHH
Confidence 123557789999999999999999999975 33344444445566789999999996 478999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999987753
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.1e-48 Score=383.51 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=185.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----D 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----~ 320 (568)
+++++||++.|+++. +...+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... .
T Consensus 1 ~l~~~~v~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGG--GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCC--cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 478999999997421 0126999999999999999999999999999999999999999999999999986422 3
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCch-hHHHH-HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGP-ALTQA-VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~-~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
..++.+||+||++ .+++.+|++||+.+.....+.... +..++ ++++++.+++.. ...++++.+||||||||++||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE-EVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh-hHhhCCchhcCHHHHHHHHHH
Confidence 5677899999998 567789999999876544432222 22222 357899999942 367899999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
|||+.+|+++||||||+|||+.+++.+++.|++.. + |+|||++||+++++..+|||+++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999863 4 899999999999999999999999999998754
No 108
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=3.2e-48 Score=380.48 Aligned_cols=208 Identities=28% Similarity=0.466 Sum_probs=186.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHHh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRI 322 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~~ 322 (568)
++++|+++.|++ +.+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....
T Consensus 1 l~~~~l~~~~~~------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGD------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECC------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 468999999973 469999999999999999999999999999999999999999999999998843 23456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+... .++...++.+++++++++.+++. +..++++.+||||||||+++||||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA--DKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhhCccccCHHHHHHHHHHHHHhc
Confidence 7889999999999999999999988643 33444445566788999999996 36899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999864 589999999999999999999999999974
No 109
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-48 Score=393.83 Aligned_cols=225 Identities=27% Similarity=0.405 Sum_probs=195.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~ 319 (568)
.++++||+|.|++... ..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4889999999974210 01469999999999999999999999999999999999999999999999998753 23
Q ss_pred HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
...++.+||+||++ .+++ .|++||+.+.....+.+.++..++++++++.++|.+ ...++++.+||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE-SLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hhhhCCcccCCHHHHHHHHHHH
Confidence 45678899999996 4565 699999988655545444555667889999999962 3578999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999864 58999999999999999999999999999999999988754
No 110
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-48 Score=390.24 Aligned_cols=212 Identities=26% Similarity=0.399 Sum_probs=190.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ++
T Consensus 1 ml~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----~~ 70 (255)
T PRK11248 1 MLQISHLYADYGG------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP----GA 70 (255)
T ss_pred CEEEEEEEEEeCC------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----CC
Confidence 4789999999973 4699999999999999999999999999999999999999999999999987532 24
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|++||+.+.....+...++..+++.++++.++|. +..++++.+||||||||+++||||+.+|+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrl~laral~~~p~ 148 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE--GAEKRYIWQLSGGQRQRVGIARALAANPQ 148 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999999998865555555455567789999999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE--CCEEEeecCHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV--DGSLQCIGNPK 468 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~--~G~l~~~g~~~ 468 (568)
++||||||+|||+.+++.++++|+++ + +|+|||++||+++++..+|||+++|+ +|+++..++.+
T Consensus 149 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 149 LLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999986 4 48999999999999999999999999 59999988754
No 111
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-48 Score=392.64 Aligned_cols=220 Identities=29% Similarity=0.507 Sum_probs=194.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+++++|+++.|++ .+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|+++|+++.. ....
T Consensus 1 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 4789999999963 2469999999999999999999999999999999999999999999999999842 2234
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++.+||+||++ .+++ +|+.||+.+.....+...++..+++.++++.++|. ++.++++++||||||||++||||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME--GFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hhhcCChhhCCHHHHHHHHHHHHH
Confidence 678899999996 3454 69999998754333444445567788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|++++|||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999864 59999999999999999999999999999999999998753
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-48 Score=385.37 Aligned_cols=219 Identities=25% Similarity=0.402 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 77 (237)
T PRK11614 4 VMLSFDKVSAHYGK------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI 77 (237)
T ss_pred cEEEEEeEEEeeCC------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH
Confidence 47999999999963 5699999999999999999999999999999999999999999999999988542 2 23
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHc-CCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSV-NLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|+.||+.+..... ..++..++++++++.+ ++. +..++++++||||||||++|||||+
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLH--ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred HHhCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHH--HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999998753222 2233445677778877 475 3678899999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|++++|||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999999986 469999999999999999999999999999999999988853
No 113
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=388.54 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=196.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
...++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999986 589999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....|+++||+||++.+++ +|++||+.+..... +.+.++..++++++++.+++.+ .+..++++.+|||||||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred cccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHH
Confidence 23456788999999998888 79999998765443 3444455677889999999841 13568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998885
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 244 ~ 244 (260)
T PRK10744 244 T 244 (260)
T ss_pred h
Confidence 4
No 114
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-48 Score=388.24 Aligned_cols=221 Identities=26% Similarity=0.424 Sum_probs=193.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
.+++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . ..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFGG------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEECC------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999988642 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh-------cCC------C--chhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL-------KNL------K--GPALTQAVEESLKSVNLFHGGVADKQAGKYS 386 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-------~~~------~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 386 (568)
.+..++|+||++.+++.+|++||+.+.... .+. . ..+..+++.++++.+|+. +..++++++||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL--EHANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh--hhhhCChhhCC
Confidence 345699999999999999999999975321 111 0 112345678889999996 47899999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++||+||+.+|+++||||||+|||+.+++.++++|.++ ++ |+|||++||+++++..+|||+++|++|++++.
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999999999986 34 89999999999999999999999999999999
Q ss_pred cCHHHHHH
Q 008362 465 GNPKELKA 472 (568)
Q Consensus 465 g~~~~l~~ 472 (568)
|+++++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99888743
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=7.2e-48 Score=380.28 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=185.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH---H
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD---R 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~---~ 321 (568)
++++|+++.|++.. ..+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .. .
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 78999999996421 124699999999999999999999999999999999999999999999999988542 11 2
Q ss_pred hh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.| +.+||+||++.+++.+|++||+.+....++....+..+++.++++.+|+. +..++++++||||||||++|||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE--HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 33 67999999999999999999998865544444344456788999999996 3789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++. |||+++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999986 3 48999999999999976 8999999999975
No 116
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9.3e-48 Score=401.09 Aligned_cols=234 Identities=24% Similarity=0.403 Sum_probs=201.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCc-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTD- 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~- 318 (568)
.+.++++||++.|+...+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++...
T Consensus 10 ~~~L~i~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDG--DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CceEEEeCeEEEEecCCC--CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 357999999999964211 357999999999999999999999999999999999999996 99999999998542
Q ss_pred H---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 008362 319 M---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 390 (568)
Q Consensus 319 ~---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 390 (568)
. .+.| +.|+|+||++ .+++.+|+.+++......+ +.+.++..+++.++++.++|.+. +..++++++||||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2 2233 4799999997 6899999999998765544 34455666788999999999631 235789999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|++||+||||+|||+.+++.++++|++++ .|.|+|++|||++++..+||||++|++|++++.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999863 3899999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 008362 469 ELKARYGGSY 478 (568)
Q Consensus 469 ~l~~~~~~~~ 478 (568)
++.+...+.|
T Consensus 248 ~i~~~p~~py 257 (330)
T PRK09473 248 DVFYQPSHPY 257 (330)
T ss_pred HHHhCCCCHH
Confidence 9987654444
No 117
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=387.45 Aligned_cols=224 Identities=26% Similarity=0.437 Sum_probs=196.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 317 (568)
.++++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 357999999999973 469999999999999999999999999999999999987 3 69999999998852
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+....++. ..++..++++++++.+++.+ .+..++++++|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 234567889999999998886 999999886555543 23444567888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999999766899999999999999999999999999999999999986
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 243 ~~ 244 (259)
T PRK14274 243 SN 244 (259)
T ss_pred hC
Confidence 53
No 118
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-48 Score=391.82 Aligned_cols=222 Identities=27% Similarity=0.468 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+
T Consensus 6 ~~l~~~nl~~~~~~~----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS----ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC----CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 479999999999631 3569999999999999999999999999999999999999999999999999864 33456
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
|+.+||+||++. .++.+|++||+.+.....+...++.+++++++++.++|. +..++++.+||||||||++|||||+.
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME--DYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH--HHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455566789999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|++++|||||+|||+.+++.++++|++++ + ++|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999864 4 599999999999996 799999999999999999887643
No 119
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=388.72 Aligned_cols=223 Identities=25% Similarity=0.445 Sum_probs=195.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
...|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 347999999999973 5699999999999999999999999999999999999874 89999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC--CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL--KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~--~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 390 (568)
.....|+.+||+||++.+++. |+.||+.+....++. +..+..+++.++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~ 169 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQ 169 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence 234567889999999998885 999999876554443 23344567889999999952 0245788999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||++|||||+.+|+++||||||+|||+.+++.+.++|+++.+++|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999887
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 250 ~~ 251 (267)
T PRK14235 250 FT 251 (267)
T ss_pred Hh
Confidence 54
No 120
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.2e-47 Score=389.86 Aligned_cols=228 Identities=26% Similarity=0.348 Sum_probs=197.0
Q ss_pred CeEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cH
Q 008362 244 HAIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~---~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~ 319 (568)
++|+++||+|+|+++.+ ++.+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999963211 112469999999999999999999999999999999999999999999999998854 23
Q ss_pred HHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
...++.+||+||++. +++.+|+.|++.+..+.. +....+..++++++++.+++.+ ...++++.+||||||||++||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP-DHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh-HHHhcCchhcCHHHHHHHHHH
Confidence 334567999999975 678889999998765543 3334455567889999999952 367889999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999986 3 38999999999999999999999999999999999988865
No 121
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=384.74 Aligned_cols=223 Identities=25% Similarity=0.401 Sum_probs=195.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~- 317 (568)
..++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGK------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 35899999999973 469999999999999999999999999999999999986 4 69999999999853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++.+|++||+.+.....+. ...+.+++++++++.+++.. .+..++.+.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 2335678899999999999999999999875544332 23344567889999999852 124578899999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++.+++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998667999999999999999999999999999999999998864
No 122
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.4e-48 Score=384.39 Aligned_cols=201 Identities=30% Similarity=0.522 Sum_probs=180.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv 341 (568)
++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.+||+| |++.+++.+|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 35799999999999999999999999999999999999999999999999987544445677899998 56788889999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+||+.+...+++...++..++++++++.+++. +..++++.+||||||||+++|+||+.+|+++||||||+|||+.+++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLE--ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 99999876666655555566788899999996 3789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 422 NLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 422 ~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
.+.++|++. + +++|||++||+++++..+||++++|++|++++.|
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999986 3 3899999999999999999999999999998764
No 123
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=389.08 Aligned_cols=220 Identities=25% Similarity=0.400 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 47999999999973 579999999999999999999999999999999999999999999999998753 33456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++.++|+||++.+++.+|+.||+.+... ..+ ....+..++++++++.+++. +..++++++||||||||++||||
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~lara 161 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK--PLAHRLVDSLSGGERQRAWIAML 161 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCCHHHHHHHHHHHH
Confidence 7789999999888899999999987432 111 11233456788999999996 37899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 162 VAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999986 33 899999999999999999999999999999999988764
No 124
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=383.65 Aligned_cols=222 Identities=25% Similarity=0.420 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---CCC--CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI---TRT--TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl---~~p--~~G~i~i~G~~i~~- 317 (568)
++++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+ .+| ++|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 47999999999973 5699999999999999999999999999999999997 455 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++... +..+++++++++.+++.+ .+..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 23456778999999998887 599999987655544332 334567889999999852 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++.+++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999987678999999999999999999999999999999999999865
No 125
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.3e-48 Score=382.23 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=188.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HHhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~~r 323 (568)
|+++||++.|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... . ...+
T Consensus 1 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 2 2245
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++.+++.+|+.||+.+.....+.. ..+..+++++.++ +. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLK--EMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHH--HHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 78999999999999999999998865543322 2234567777776 44 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|++++|||||+|||+.+++.++++|++.+ .|+|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999864 389999999999999999999999999999999998876
No 126
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-47 Score=384.34 Aligned_cols=223 Identities=26% Similarity=0.418 Sum_probs=196.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 357999999999973 5699999999999999999999999999999999999875 89999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++ +|++||+.+.....+. ...+..++++++++.+++.+ .+..++++.+|||||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 22355788999999999988 8999999987655543 23344567888999998742 12568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 235 ~ 235 (251)
T PRK14270 235 L 235 (251)
T ss_pred c
Confidence 4
No 127
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-48 Score=379.29 Aligned_cols=303 Identities=25% Similarity=0.402 Sum_probs=244.2
Q ss_pred eEEEEeEEEEcCCCC---------------CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 008362 245 AIISDNLRKIYPGRD---------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~---------------~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~ 309 (568)
++.++||+|.|.-.- ..+...|++|+||+|++|+++|++|+||||||||+|||+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 577788888774310 01235699999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 310 VQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 310 i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
++|+++..+.+..-+++|+++ |...++.++.+.|.+..-..++.++.++.+++.+.+.+.++|+ +..+.+++.||-|
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~--~~lk~~vr~LSlG 160 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE--GFLKWPVRKLSLG 160 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch--hhhhhhhhhccch
Confidence 999999877777778888875 7788999999999999888889999999999999999999996 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||+|+.||.||+++|+|++|||||-|||..++..+.+.++++ +++.||++|||+|+.++++||||+.|++|+++.+|+
T Consensus 161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~ 240 (325)
T COG4586 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGT 240 (325)
T ss_pred HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeeccc
Confidence 999999999999999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHhcCCCceeEEEecceEEEEecCCcCcHHHHHHHHHHHhcCCceeEEEec
Q 008362 467 PKELKARYGGSYVFTMTTSADHEEEVESMAKRLSPGANKIYQISGTQKFELPKQEVRVSDVFQAVEEAKSRFTVFAWGLA 546 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 546 (568)
.++++++|+....+.+....... ..++ ...++..... +....+..+. .+..+.+.+...++.+.|..+.
T Consensus 241 l~~l~~~f~~~k~~~~el~~~~~--~~~l--~~l~d~~~~~--~~~~~~~~~r-----~~~~~~i~~~~~e~~v~Dl~v~ 309 (325)
T COG4586 241 LAQLQEQFGPYKEFSVELKQAKS--LSQL--ALLGDVTIEE--GLNIKNDVSR-----EESADIIAKLLAEFEVRDLTVE 309 (325)
T ss_pred HHHHHHHhCCceEEEEEEccccc--chhc--cccchhhhhc--ccchhhcchh-----HHHHHHHHHHHHhhhhccCCCC
Confidence 99999999998777665541111 0000 0001111100 1111222111 1222333334456778899999
Q ss_pred cCCHHHHHHHhhcc
Q 008362 547 DTTLEDVFIKVARH 560 (568)
Q Consensus 547 ~~tLEdvFl~~~~~ 560 (568)
++..|++--++.++
T Consensus 310 d~~ie~vi~r~y~~ 323 (325)
T COG4586 310 DPEIEDVIRRIYQK 323 (325)
T ss_pred CCcHHHHHHHHHhc
Confidence 99999998887654
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-47 Score=386.92 Aligned_cols=219 Identities=27% Similarity=0.463 Sum_probs=194.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|++++|++ +.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+
T Consensus 2 ~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 5899999999973 579999999999999999999999999999999999999999999999998753 334556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.+||+||++.+++.+|+.||+.+... ..+...++..++++++++.+++. +..++++.+||||||||++||||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN--HLADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH--HHHcCCcccCCHHHHHHHHHHHHH
Confidence 789999999999989999999987421 11222234456788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 99999999999999999999999999999864 5899999999999999999999999999999999988764
No 129
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-47 Score=379.47 Aligned_cols=216 Identities=24% Similarity=0.414 Sum_probs=188.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-- 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-- 320 (568)
++++++|+++.|++.. ..+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..
T Consensus 5 ~~l~~~~l~~~~~~~~--~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE--HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCC--cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 4799999999997421 013599999999999999999999999999999999999999999999999988542 11
Q ss_pred -Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 321 -RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 321 -~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
+. ++.+||+||++.+++.+|+.||+.+....++.+.++.++++.++++.+++. +..++++.+||||||||++||+|
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG--KRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHH
Confidence 12 357999999999999999999998765444444445567889999999996 37789999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
|+.+|+++||||||+|||+.+++.++++|++. ++ |+|||++||++++++. |||+++|++|++++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEec
Confidence 99999999999999999999999999999986 44 8999999999999865 999999999998753
No 130
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-47 Score=385.67 Aligned_cols=219 Identities=24% Similarity=0.401 Sum_probs=194.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-------
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------- 318 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------- 318 (568)
|+++||++.|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGI------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCC------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 468999999973 4699999999999999999999999999999999999999999999999987421
Q ss_pred -------HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 319 -------MDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 319 -------~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
....++.+||+||++.+++.+|+.||+.+... .++...++..+.+.++++.+++. +..++.+.+||||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~ 152 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA--DKADHMPAQLSGGQQ 152 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhhcChhhcCHHHH
Confidence 13457889999999999999999999987432 23444445566788999999996 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T TIGR03005 153 QRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPD 232 (252)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999998
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++.+
T Consensus 233 ~~~~ 236 (252)
T TIGR03005 233 EIFR 236 (252)
T ss_pred HHhc
Confidence 8754
No 131
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=385.49 Aligned_cols=222 Identities=27% Similarity=0.438 Sum_probs=195.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
.++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGS------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECC------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 6899999999973 4699999999999999999999999999999999999874 79999999998742
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++.+|++||+.+....++. +.++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 157 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRL 157 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHH
Confidence 2345678899999999999999999999886554442 33445567888999999841 1356889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE------CCEEEeecCH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNP 467 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~------~G~l~~~g~~ 467 (568)
+|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 158 CIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999999999999987667999999999999999999999997 7999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 238 ~~~~~ 242 (258)
T PRK14241 238 EKIFS 242 (258)
T ss_pred HHHHh
Confidence 88854
No 132
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=382.82 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=195.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCC-cHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRT-DMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~-~~~ 320 (568)
+++++|+++.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 5889999999973 569999999999999999999999999999999999974 799999999999864 334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~la 396 (568)
..|+.+||+||++.+++ .|++||+.+....++.. .+..+++++++++.+++.+ .+..++++.+||||||||+++|
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHH
Confidence 56788999999999997 69999999865554431 2344567888999999942 0246888999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|++++|||||+|||+.+++.+.+.|++..+|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999987668999999999999999999999999999999999998764
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-47 Score=376.51 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=182.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++|+|++ +. .|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.... ..++.
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~-~~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAP-PADRP 71 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCC-HhHcc
Confidence 468999999963 22 3999999999999999999999999999999999999999999999885432 23578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+.........++.++++.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA--GLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred EEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998754321111233456788999999996 378999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.++++|+++. .|+|||++||+++++..+|||+++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999863 4899999999999999999999999999998654
No 134
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=388.28 Aligned_cols=222 Identities=27% Similarity=0.447 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++|++|.|++. .+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 479999999999742 2459999999999999999999999999999999999999999999999999854 34567
Q ss_pred hcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++. +++..|+.+|+.+.....+.+.++..++++++++.+++. +..++++.+||||||||++||||++.
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML--ERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 788999999974 677789999998865544444455566788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++.. |||+++|++|++++.|+++++.+
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999863 3 8999999999999986 99999999999999999988754
No 135
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=386.52 Aligned_cols=223 Identities=26% Similarity=0.425 Sum_probs=193.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999864 799999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+.....+... ...++.+.++++.+++.+ .+..++++++|||||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 223457789999999998885 99999987644433222 233456788888888842 02468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999998886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 252 ~ 252 (268)
T PRK14248 252 T 252 (268)
T ss_pred h
Confidence 5
No 136
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-47 Score=392.57 Aligned_cols=225 Identities=27% Similarity=0.391 Sum_probs=194.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------c
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------~ 318 (568)
.|+++|++|+|+++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 6 ~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5899999999974210 01359999999999999999999999999999999999999999999999998742 2
Q ss_pred HHHhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
....|+.+||+||++. +++ .|++||+.+.....+...++..++++++++.++|.. +..++++++||||||||++||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE-DYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 3456778999999973 454 599999987654444444455567888999999942 468999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999986 3 48999999999999999999999999999999999988743
No 137
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=387.83 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
.+++++||+++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 57999999999973 569999999999999999999999999999999999987 699999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....|+.+||+||++.+++. |++||+.+....++.. .+.++++.++++.+++.. .+..++++.+||||||||+
T Consensus 86 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred cCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHH
Confidence 344567789999999999884 9999999876554432 234456778888888731 1357889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-----------CEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-----------GSLQ 462 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-----------G~l~ 462 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++ |+++
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 99999999999999999999999999999999999886689999999999999999999999996 6789
Q ss_pred eecCHHHHHH
Q 008362 463 CIGNPKELKA 472 (568)
Q Consensus 463 ~~g~~~~l~~ 472 (568)
+.|+++++.+
T Consensus 244 ~~~~~~~~~~ 253 (269)
T PRK14259 244 EFNETKKIFN 253 (269)
T ss_pred EeCCHHHHHh
Confidence 9999988865
No 138
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-47 Score=383.43 Aligned_cols=216 Identities=27% Similarity=0.427 Sum_probs=192.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 5899999999963 469999999999999999999999999999999999999999999999998854 334567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++ .|++||+.+....++ ...+++.++++.+++.+ +..++++.+||||||||++||||++.+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 77 RKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNK-EYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999887 699999987543332 12356788999999952 3678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+++||||||+|||+.+++.+.+.|++. + +|+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999999999986 3 48999999999999999999999999999999999988754
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=390.78 Aligned_cols=222 Identities=25% Similarity=0.451 Sum_probs=197.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEECCeeCCC-cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRT-DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---G~i~i~G~~i~~-~~ 319 (568)
.+++++|++|.|++. .+.+++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|+++.. ..
T Consensus 4 ~~l~i~~l~~~~~~~----~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS----KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC----CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 479999999999632 2469999999999999999999999999999999999999998 899999999864 33
Q ss_pred HHhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...++++||+||++. +++.+|++||+.+.....+.+.++..+++.++++.++|. +..++++++||||||||++||+|
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML--DYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh--hHhcCCcccCCHHHHHHHHHHHH
Confidence 456778999999974 667789999998765555555556667889999999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999986 3 3899999999999996 799999999999999999988754
No 140
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-47 Score=398.57 Aligned_cols=230 Identities=19% Similarity=0.272 Sum_probs=194.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC----CCceEEEECCeeCCC-cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR----TTSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~----p~~G~i~i~G~~i~~-~~ 319 (568)
+|+++||+|.|+.+. +.+.|++|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 3 ~L~v~~l~~~y~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKTSD--GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeCCC--CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 689999999996421 13579999999999999999999999999999999999986 589999999999854 22
Q ss_pred H---Hh-hcceEEEcCCCC--CCCCCCHHHHHHHHhhh---cCC---CchhHHHHHHHHHHHcCCCCC-CcccccCCCCC
Q 008362 320 D---RI-YTSMGVCPQEDL--LWETLTGREHLLFYGRL---KNL---KGPALTQAVEESLKSVNLFHG-GVADKQAGKYS 386 (568)
Q Consensus 320 ~---~~-r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l---~~~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LS 386 (568)
. .. ++.|||+||++. +.+.+|+.+++...... .+. ...+.++++.++++.+||.+. +..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 2 22 357999999975 67889999999764221 111 113445678999999999631 24589999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++|||||+.+|++|||||||+|||+.++++++++|++++ .|.|||++|||++++..+||||++|++|++++.
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 389999999999999999999999999999999
Q ss_pred cCHHHHHHhcCC
Q 008362 465 GNPKELKARYGG 476 (568)
Q Consensus 465 g~~~~l~~~~~~ 476 (568)
|+++++.+...+
T Consensus 241 g~~~~i~~~p~~ 252 (330)
T PRK15093 241 APSKELVTTPHH 252 (330)
T ss_pred CCHHHHHhCCCC
Confidence 999998765433
No 141
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.4e-47 Score=387.19 Aligned_cols=227 Identities=22% Similarity=0.362 Sum_probs=195.7
Q ss_pred eEEEEeEEEEcCCCC---CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-
Q 008362 245 AIISDNLRKIYPGRD---GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~---~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~- 319 (568)
+++++||+|.|++.. +..++.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996310 00135799999999999999999999999999999999999999999999999988542 1
Q ss_pred --HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 320 --DRIYTSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 320 --~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
...++.+||+||++ .+++.+|++||+.+.... .+...++..+++.++++.+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS-EDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhhCChhhCCHHHHHHHH
Confidence 23567899999996 467789999999865432 23333445567889999999952 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+++.|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999998864
No 142
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-47 Score=379.48 Aligned_cols=218 Identities=35% Similarity=0.560 Sum_probs=196.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++.
T Consensus 1 l~~~~l~~~~~~------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~ 73 (232)
T cd03300 1 IELENVSKFYGG------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-HKRP 73 (232)
T ss_pred CEEEeEEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-hhcc
Confidence 468999999973 579999999999999999999999999999999999999999999999998864322 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|++||+.+....++.......++++++++.+++. +..++.+.+||||||||++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE--GYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred eEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998866655544455566788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+||||||+|||+.+++.+++++++++ + |+|||++||+++++..+|||+++|++|++.+.|+++++.+
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999888765
No 143
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-47 Score=379.79 Aligned_cols=217 Identities=26% Similarity=0.477 Sum_probs=195.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|+++.|++ ++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... .++.
T Consensus 1 l~~~~l~~~~~~-------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-~~~~ 72 (235)
T cd03299 1 LKVENLSKDWKE-------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-EKRD 72 (235)
T ss_pred CeeEeEEEEeCC-------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-hHcC
Confidence 468999999962 38999999999999999999999999999999999999999999999998864222 3578
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+.....+....+..+++.++++.++|. +..++++.+||||||||++||||++.+|++
T Consensus 73 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID--HLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998765555544455666788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+|||+.+++.+++++++.. + |+|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999863 3 8999999999999999999999999999999999888754
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7e-48 Score=378.35 Aligned_cols=206 Identities=27% Similarity=0.494 Sum_probs=179.2
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
+++||+|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.+
T Consensus 1 ~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i 70 (213)
T cd03235 1 EVEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRI 70 (213)
T ss_pred CcccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhhe
Confidence 36899999973 46999999999999999999999999999999999999999999999998764 356789
Q ss_pred EEEcCCCCCCC--CCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 327 GVCPQEDLLWE--TLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 327 g~~~Q~~~l~~--~lTv~e~l~~~~~l~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
||+||++.+++ .+|++||+.+...... ...++.+++++++++.+++. +..++++.+||||||||++|||||+
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS--ELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH--HHHhCCcccCCHHHHHHHHHHHHHH
Confidence 99999987632 3799999987543211 12234456788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
.+|+++||||||+|||+.+++.+++.|++.. +|+|||++||+++++..+|||+++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999864 7899999999999999999999999886 55543
No 145
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.6e-47 Score=384.89 Aligned_cols=218 Identities=25% Similarity=0.427 Sum_probs=193.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....++
T Consensus 2 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 689999999973 579999999999999999999999999999999999999999999999998854 3345567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-L---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-l---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+|++||+.+... . .+...++..+++.++++.+++. +..++++.+||||||||++||||++
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS--HLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHHHHHHHHHHh
Confidence 89999999888888999999987421 1 1112233445788999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999864 5899999999999999999999999999999999988763
No 146
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-47 Score=386.51 Aligned_cols=220 Identities=20% Similarity=0.352 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....
T Consensus 6 ~~l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGK------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECC------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47999999999973 569999999999999999999999999999999999999999999999998854 33445
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++.+||+||++.+++.+|++||+.+... ..+ ...+...++++++++.++|. +..++++.+||||||||++||||
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~qrv~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT--HLADQSVDTLSGGQRQRAWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH--HHhcCCcccCChHHHHHHHHHHH
Confidence 6789999999999999999999987421 111 11233445788999999996 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999986 3 3899999999999999999999999999999999998874
No 147
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.8e-47 Score=381.27 Aligned_cols=220 Identities=21% Similarity=0.294 Sum_probs=190.1
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCc-HHH-
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~-~~~- 321 (568)
|+++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++... ...
T Consensus 1 l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVED------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECC------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 468999999973 56999999999999999999999999999999999995 79999999999988542 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-------CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-------LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl 393 (568)
.+..++|+||++.+++.+|++||+.+...... ....+..+++.++++.++|.+ +..++++. +||||||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-EFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-hhcccccccCcCHHHHHHH
Confidence 34559999999999999999999987543221 122334567889999999962 35678887 5999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++++++.+ |||+++|++|+++..|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 689999999999999998 8999999999999999998765
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
No 148
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-47 Score=387.82 Aligned_cols=223 Identities=24% Similarity=0.400 Sum_probs=197.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++|+++.|++. ..+.+++|+||++++||++||+|+||||||||+++|+|+.+|++|+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~~~~~---~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKE---SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCC---CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 69999999999742 12469999999999999999999999999999999999999999999999999864 334567
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.+||+||++. .++..|+.||+.+.....+...++..++++++++.++|. ++.++++.+||||||||++|||||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML--DFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH--hHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 88999999974 566789999998765544445555567789999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+++||||||+|||+.+++.++++++++. + |+|||++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999863 3 899999999999997 5999999999999999999888653
No 149
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-47 Score=380.96 Aligned_cols=221 Identities=26% Similarity=0.469 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
.++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 5899999999973 4699999999999999999999999999999999999763 79999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....|+.+||+||++.+++ +|++||+.+....++.. .++.+++++++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRL 155 (250)
T ss_pred cchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHH
Confidence 23456788999999998888 89999999865555432 2345667888899988741 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 156 CIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988754
No 150
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-47 Score=381.16 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CC---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RT---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p---~~G~i~i~G~~i~~- 317 (568)
++++++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14239 4 PILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP 77 (252)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc
Confidence 37999999999973 46999999999999999999999999999999999985 46 59999999998843
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+.....+... +..++++.++++.+++.+ .+..++++.+||||||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 78 RTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred ccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 22345678999999999887 799999988655544432 234567888899998742 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
No 151
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.9e-47 Score=379.41 Aligned_cols=218 Identities=28% Similarity=0.487 Sum_probs=196.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++.
T Consensus 1 i~i~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~ 73 (237)
T TIGR00968 1 IEIANISKRFGS------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRK 73 (237)
T ss_pred CEEEEEEEEECC------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcC
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 234678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+....++.......+.++++++.+++. +..++.+++||+|||||+++||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE--GLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH--hHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998765554444444556788999999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+|||+.+++.++++|++.+ + |+|||++||+++++..+|||+++|++|++++.|+.+++++
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999864 3 8999999999999999999999999999999999998864
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=378.49 Aligned_cols=217 Identities=23% Similarity=0.385 Sum_probs=190.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ +. .|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ~l~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~ 71 (232)
T PRK10771 1 MLKLTDITWLYHH------LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRR 71 (232)
T ss_pred CeEEEEEEEEECC------cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhc
Confidence 4789999999963 22 3899999999999999999999999999999999999999999999875422 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++.+|+.||+.+.........+..++++.++++.+|+. +..++++.+||||||||++||||++.+|+
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE--DLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH--HHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 7999999999999999999998653211111233456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|++.+.|+++++.+
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999986 4 38999999999999999999999999999999999988764
No 153
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-47 Score=380.81 Aligned_cols=221 Identities=26% Similarity=0.458 Sum_probs=194.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
+|+++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYGE------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeCC------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 6899999999973 4699999999999999999999999999999999999874 89999999998753
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.++|+||++.+++ +|++||+.+.....+.. .+..++.++++++.+++.+ ....++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred hhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHH
Confidence 12345778999999999888 89999998865544432 2234566788899999852 0246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999998865
No 154
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=384.00 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=187.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++||+|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ..+
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~ 80 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAR 80 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----Hhh
Confidence 56999999999973 46999999999999999999999999999999999999999999999997752 456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+.. .. ..++++.++++.++|. +..++++.+||||||||++|||||+.+|
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~--~~----~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL--KG----QWRDAALQALAAVGLA--DRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc--cc----hHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998742 11 2245788899999996 4789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
+++||||||+|||+.+++.+.++|+++ + .|+|||++||+++++..+|||+++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999885 4 4899999999999999999999999999999988764
No 155
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-47 Score=400.27 Aligned_cols=213 Identities=23% Similarity=0.397 Sum_probs=190.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 319 (568)
||++ ||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 1 ~l~~-~l~k~~~~------~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~ 71 (352)
T PRK11144 1 MLEL-NFKQQLGD------LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71 (352)
T ss_pred CeEE-EEEEEeCC------EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccc
Confidence 4677 99999973 22 3 89999999999999999999999999999999999999999999987531 2
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
...++++||+||++.+|+.+|++||+.+... ...+++++++++.++|. +..++++++||||||||++|||||
T Consensus 72 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qRvalaraL 143 (352)
T PRK11144 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIE--PLLDRYPGSLSGGEKQRVAIGRAL 143 (352)
T ss_pred chhhCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCc--hhhhCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999987532 12345788999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++|||++++..+|||+++|++|++...|+++++.++.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999986 34 899999999999999999999999999999999999987643
No 156
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.6e-47 Score=384.41 Aligned_cols=219 Identities=23% Similarity=0.380 Sum_probs=193.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCC---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT--- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~--- 317 (568)
++++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFNQ------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeCC------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 47999999999973 57999999999999999999999999999999999999986 4999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCC
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYS 386 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LS 386 (568)
.....++.+||+||++.+++.+|++||+.+.... .+...++.+++++++++.+|+. +..++++.+||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS 154 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV--HFAHQRVSTLS 154 (262)
T ss_pred cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH--HHHhCCccccC
Confidence 1234567899999999999999999999864321 0111234456789999999996 37899999999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++. +|+|||++||+++++..+|||+++|++|++.+.
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999863 489999999999999999999999999999999
Q ss_pred cCHHHH
Q 008362 465 GNPKEL 470 (568)
Q Consensus 465 g~~~~l 470 (568)
|+++++
T Consensus 235 g~~~~~ 240 (262)
T PRK09984 235 GSSQQF 240 (262)
T ss_pred CCHHHh
Confidence 998875
No 157
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-46 Score=382.95 Aligned_cols=224 Identities=25% Similarity=0.405 Sum_probs=196.4
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCC
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 316 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~ 316 (568)
...+|+++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 3457999999999963 579999999999999999999999999999999999986 58999999999985
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHH
Q 008362 317 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMK 390 (568)
Q Consensus 317 ~---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~k 390 (568)
. .....++.+||+||++.+++ .|++||+.+.....+. ...+.++++.++++.+++.+ .+..++++.+||||||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred cccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 3 23456788999999998887 5999999886544443 23344567888999999842 1257889999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||++||||++.+|++++|||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999876689999999999999999999999999999999999988
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 250 ~~ 251 (267)
T PRK14237 250 FT 251 (267)
T ss_pred hc
Confidence 54
No 158
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-47 Score=379.79 Aligned_cols=222 Identities=26% Similarity=0.460 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~- 317 (568)
++++++|++++|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~~------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGN------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECC------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 36899999999973 569999999999999999999999999999999999987 489999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||++|++.+++ .|++||+.+.....+... +..+++++++++.+++.. .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 77 KMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred cchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH
Confidence 23346778999999999887 799999987655444332 234567888999999841 024688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++++|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987668999999999999999999999999999999999988754
No 159
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=379.11 Aligned_cols=223 Identities=24% Similarity=0.407 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 317 (568)
+.++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|+ +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 46999999999973 46999999999999999999999999999999999999997 6999999998753
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++. |++||+.+....++... ++.++.++++++.+++.+ .+..++++.+||||||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR 155 (251)
T ss_pred ccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH
Confidence 234567889999999999885 99999998655544332 234466778888888742 135789999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987678999999999999999999999999999999999998865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 236 ~ 236 (251)
T PRK14249 236 R 236 (251)
T ss_pred C
Confidence 3
No 160
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.2e-47 Score=374.34 Aligned_cols=209 Identities=36% Similarity=0.619 Sum_probs=188.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... . ++.
T Consensus 1 l~l~~v~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~-~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFGK------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--D-LHK 71 (223)
T ss_pred CEEEeEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--c-ccc
Confidence 468999999973 5699999999999999999999999999999999999999999999999987532 1 357
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++....+.. ++++.++++.+++. +..++++.+||||||||+++|||++.+|++
T Consensus 72 ~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 72 IGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLT--NTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCc--HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998876554432 34678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
++|||||+|||+.+++.++++|++.+ +|+|||++||+++++..+|||+++|++|++.+.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999864 58999999999999999999999999999999998753
No 161
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.2e-47 Score=399.04 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=189.7
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHhhc
Q 008362 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYT 324 (568)
Q Consensus 250 ~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~r~ 324 (568)
||+|+|++ +. + |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....++
T Consensus 4 ~l~~~~~~------~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLGD------FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEECC------EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 89999973 33 4 99999999999999999999999999999999999999999999988532 124567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+|+.+|++||+.+..... ...+.+++++++++.++|. +..++++.+||||||||++|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIG--HLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998864422 2234456789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++++....
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999986 34 899999999999999999999999999999999999987543
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.5e-47 Score=371.68 Aligned_cols=210 Identities=22% Similarity=0.402 Sum_probs=184.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||+|.|++ .++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.
T Consensus 1 ~~~~~l~~~~~~--------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH--------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL-APYQRP 71 (213)
T ss_pred CeEEeeeEEeCC--------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC-Chhccc
Confidence 368999999962 46799999999999999999999999999999999999999999999998542 235678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.+++.+|+.||+.+.........++.+++++++++.+++. +..++.+.+||||||||++||||++.+|++
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA--DYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH--HHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998643321111223456788899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
++|||||+|||+.+++.+.++|++. ++ |+|||++||+++++..+|||+++|++|++++.|.
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999986 33 8999999999999999999999999999998875
No 163
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=379.38 Aligned_cols=223 Identities=25% Similarity=0.416 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~ 317 (568)
.++|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGE------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECC------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 347999999999973 569999999999999999999999999999999999975 3 48999999999854
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
...+.++.+||+||++.+++. |++||+.+..+.++.. ..+.++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHH
Confidence 234567889999999999885 9999999876655432 2334567788889888742 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 237 ~ 237 (253)
T PRK14261 237 E 237 (253)
T ss_pred h
Confidence 5
No 164
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=378.36 Aligned_cols=221 Identities=25% Similarity=0.442 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~-- 317 (568)
+++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 6899999999973 5699999999999999999999999999999999999986 59999999998842
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
.....++.+||+||++.+++ .|+.||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||++
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHH
Confidence 34456788999999999998 79999998764443332 2334567788888888742 12467899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999998667999999999999999999999999999999999988754
No 165
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-47 Score=371.84 Aligned_cols=204 Identities=30% Similarity=0.466 Sum_probs=180.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-----cHHHhh
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-----DMDRIY 323 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-----~~~~~r 323 (568)
-||+|+|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 4 ~~l~~~~~~------~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIEKRLPD------FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeeeEecCC------eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 399999974 334 99999999 9999999999999999999999999999999999998753 123456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+||++.+++.+|++||+.+..... ..+..++++.++++.+++. +..++++.+||||||||++||+||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLD--HLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCH--hHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999998764322 2233456788999999996 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
++++|||||+|||+.+++.++++|++. ++ |+|||++||++++++.+|||+++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999986 44 899999999999999999999999999998765
No 166
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=377.95 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=193.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~-- 317 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGD------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECC------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 6899999999973 57999999999999999999999999999999999999875 8999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++.+|+.||+.+.....+.. .++..+.++++++.+++.. .+..++++++||||||||+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRL 157 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHH
Confidence 23356778999999999999999999998755443332 2334556777777777631 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|++++|||||+|||+.+++.+.+.|++.++++|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 158 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 158 CIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999998865
No 167
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.3e-46 Score=380.15 Aligned_cols=222 Identities=23% Similarity=0.360 Sum_probs=192.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCCc
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRTD 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~~ 318 (568)
++++++|+++.|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|++ +...
T Consensus 5 ~~l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYGP------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcCC------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 47999999999973 469999999999999999999999999999999999999999999999998 6432
Q ss_pred -HHH----hhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 319 -MDR----IYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 319 -~~~----~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
... .++.+||+||++ .+++.+|+.||+.+.....+. ...+.++++.++++.+++.+ +..++++.+||||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~Gq~ 157 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA-ARIDDLPTTFSGGMQ 157 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh-hHHhCCCccCCHHHH
Confidence 211 356799999997 467788999999764322221 22344567889999999952 367899999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|++|+++..|+++
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 237 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTD 237 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999986 33 899999999999999999999999999999999999
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++..
T Consensus 238 ~~~~ 241 (258)
T PRK11701 238 QVLD 241 (258)
T ss_pred HHhc
Confidence 8764
No 168
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-47 Score=381.33 Aligned_cols=232 Identities=25% Similarity=0.395 Sum_probs=205.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-C----CceEEEECCeeCCCcH-
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-T----TSGTAYVQGLDIRTDM- 319 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p----~~G~i~i~G~~i~~~~- 319 (568)
++++||+..|....+ ...||+||||++++||++||+|.+|||||||.+.|.|+++ | ++|+|.++|+|+..-.
T Consensus 2 L~v~nL~v~f~~~~g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999999975322 4679999999999999999999999999999999999998 4 6799999999885422
Q ss_pred ---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHH
Q 008362 320 ---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMK 390 (568)
Q Consensus 320 ---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~-~-~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~k 390 (568)
.++| +.|+++||++ .|.|-+|+.+.+.-..+.+. . .+++..+++.++|+.+|+.+. ...+.++.+||||||
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 2344 5799999996 69999999999988777654 3 356778899999999999851 256999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||.||+||+.+|++||.||||++||...+.++.++|++++ .|.|+|++|||+..+.++||||+||..|++++.|+.+
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 5999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEE
Q 008362 469 ELKARYGGSYV 479 (568)
Q Consensus 469 ~l~~~~~~~~~ 479 (568)
++.+...+.|+
T Consensus 240 ~i~~~P~HPYT 250 (316)
T COG0444 240 EIFKNPKHPYT 250 (316)
T ss_pred HHhcCCCChHH
Confidence 99988777775
No 169
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=381.82 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
..+++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGD------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECC------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 457999999999973 469999999999999999999999999999999999987 489999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.++|+||++.+++. |++||+.+.....+... +..+++++++++.+++.+ .+..++++.+|||||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 234567889999999999986 99999987655554322 234566888999999852 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++.++|||+++|++|+++..|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 256 ~ 256 (272)
T PRK14236 256 T 256 (272)
T ss_pred c
Confidence 4
No 170
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-47 Score=351.72 Aligned_cols=217 Identities=26% Similarity=0.453 Sum_probs=193.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++.+++++..|+. .=-..+++|+.||+++|+||+|||||||+|+|+|+..|.+|+|.|+|+|..... -..|
T Consensus 1 ~l~L~~V~~~y~~--------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~R 71 (231)
T COG3840 1 MLALDDVRFSYGH--------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAER 71 (231)
T ss_pred CccccceEEeeCc--------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccC
Confidence 3678899999973 345688999999999999999999999999999999999999999999986432 2356
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
-++++||+++||..+||.+|+.++..- ++ -..+.+++++.++..+||. ++.++.+.+||||||||+++||+|+.+-
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P-~LkL~a~~r~~v~~aa~~vGl~--~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSP-GLKLNAEQREKVEAAAAQVGLA--GFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCc-ccccCHHHHHHHHHHHHHhChh--hHhhhCccccCchHHHHHHHHHHHhccC
Confidence 799999999999999999999985331 22 2355678899999999997 5999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++||||+|+|||.-|.++..++.++ .++.|++|+||+.+++.+++||++++++||+...|+.+++.+.
T Consensus 149 PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred CeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999885 4589999999999999999999999999999999999988654
No 171
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=382.38 Aligned_cols=222 Identities=22% Similarity=0.437 Sum_probs=194.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGD------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 457999999999973 569999999999999999999999999999999999987 699999999998743
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.++|+||++.+++. |++||+.+....++.+ .+..++++++++.+++.+ .+..++++.+||||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred cccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH
Confidence 234567889999999988885 9999998876555443 244567889999999842 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEE-EEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG-IFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~-il~~G~l~~~g~~~~l~ 471 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++++++|||++||+++++..+|||++ +|++|+++..|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999997656899999999999999999975 57999999999998875
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 269 ~ 269 (285)
T PRK14254 269 E 269 (285)
T ss_pred h
Confidence 4
No 172
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-46 Score=383.00 Aligned_cols=224 Identities=25% Similarity=0.403 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.+.++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYGE------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 457999999999973 469999999999999999999999999999999999864 499999999998753
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....|+.+||+||++.+++. |+.||+.+.....+.. ....++++.++++.+++.+ .+..++++.+|||||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 223467789999999998885 9999999865554433 2334567788899888731 13568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766799999999999999999999999999999999999886
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
No 173
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-46 Score=379.98 Aligned_cols=223 Identities=24% Similarity=0.433 Sum_probs=192.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGE------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 457999999999973 469999999999999999999999999999999999987 699999999998842
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
.....++.+||+||++.+++. |++||+.+..+..+...+ ..++.+.++++.+++.+ .+..++++.+|||||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred ccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence 234567789999999998874 999999986544443222 23455677777775421 12568899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++|||||+.+|+++||||||+|||+.+++.+.++|+++.+++|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998766899999999999999999999999999999999998885
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 255 ~ 255 (271)
T PRK14238 255 S 255 (271)
T ss_pred c
Confidence 4
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=373.82 Aligned_cols=220 Identities=24% Similarity=0.446 Sum_probs=187.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGD----GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCC----CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 4689999999742 2369999999999999999999999999999999999999999999999998753 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+..... ...+..+ .+.+.++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYD--TVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcc--eeeccCCCcCCHHHHHHHHHHH
Confidence 8999999998887 69999998754321 1112111 234556655 564 3678889999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+.+|+++||||||+|||+.+++.+++.|++..+++|||++||++++++. |||+++|++|+++..|+++++...++
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999999999999999999987779999999999999986 99999999999999999999876543
No 175
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-46 Score=376.06 Aligned_cols=220 Identities=27% Similarity=0.447 Sum_probs=191.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC---
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT--- 317 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~--- 317 (568)
-+++|+++.|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 468999999963 579999999999999999999999999999999999986 579999999998743
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC--chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK--GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~--~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
....+++.+||+||++.+++. |++||+.+....++.. .++.++.+.++++.+++.+ .+..++.+.+||||||||+
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 223467889999999998886 9999998764444332 2344566788999999952 0135788999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+.+.|++.++|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999987668999999999999999999999999999999999988764
No 176
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-46 Score=377.31 Aligned_cols=222 Identities=26% Similarity=0.418 Sum_probs=193.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
..++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+|+|+|+.+| ++|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYNT------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEECC------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 36999999999973 4699999999999999999999999999999999999985 58999999998843
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ +|++||+.+....++. +..+..+.+.++++.+++.+ .+..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 80 RININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158 (259)
T ss_pred ccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456778999999999998 8999999876544332 33344566788899998841 135788999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE-----CCEEEeecCH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-----DGSLQCIGNP 467 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~-----~G~l~~~g~~ 467 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987667999999999999999999999998 5999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 239 ~~~~~ 243 (259)
T PRK14260 239 TQIFS 243 (259)
T ss_pred HHHhc
Confidence 99854
No 177
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-46 Score=375.89 Aligned_cols=218 Identities=23% Similarity=0.426 Sum_probs=184.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPD----GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCC----CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 4689999999632 2569999999999999999999999999999999999999999999999998753 3345678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+... +....+..+ .+.++++.+ ++. ...++++.+||||||||++|||
T Consensus 77 ~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYD--TIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999998876 699999987432 111111111 123445555 443 3567899999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+.+|+++||||||+|||+.+++.+++.|+++.+|+|||++||++++++ .|||+++|++|+++..|+++++.++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999999999998767999999999999996 5999999999999999999988765
No 178
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=378.51 Aligned_cols=222 Identities=23% Similarity=0.403 Sum_probs=192.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
.++|+++|++|.|++ +++++|+||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGS------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECC------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 347999999999973 469999999999999999999999999999999999976 489999999998742
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++++||+||++.+++. |+.||+.+.....+.. .+..++++++++.+++.+ .+..++++.+||||||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 234567889999999988884 9999998865444332 233456777888888741 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE---------CCEEEe
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 463 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~---------~G~l~~ 463 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++..+++|||++||+++++..+|||+++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987667899999999999999999999998 899999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++.+
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 999999865
No 179
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=373.90 Aligned_cols=222 Identities=27% Similarity=0.464 Sum_probs=192.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--C---CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--T---TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p---~~G~i~i~G~~i~~- 317 (568)
.+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+.+ | ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYGK------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEECC------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 47999999999973 569999999999999999999999999999999999875 5 59999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++ .|++||+.+....++...+ ..++++.+.++.+++.. .+..++.+.+||||||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR 156 (252)
T ss_pred cccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH
Confidence 23456778999999999988 6999999886555443322 23456777888887631 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|+++..|++.++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999988765
No 180
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=375.63 Aligned_cols=225 Identities=23% Similarity=0.402 Sum_probs=195.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC------eeCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG------LDIR 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G------~~i~ 316 (568)
.+++.++|++|+|++ +.+++|+||++.+||+++|+||||||||||+++|+|+.+|++|+|.++| +++.
T Consensus 8 ~~~i~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYIND------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEecCC------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 357999999999973 5799999999999999999999999999999999999999997777666 4443
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 317 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 317 ~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
. .....++.+||+||++.+++.+|++||+.+....++.. .++..+++.++++.+++.+ .+..++.+..||||||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 2 33456788999999999999999999999875544432 3345567889999999852 024678999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|++++|||||+|||+.+++.+++.|.++++++|||++||+++++..+|||+++|++|++++.|+++++.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999987667999999999999999999999999999999999998865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 242 ~ 242 (257)
T PRK14246 242 S 242 (257)
T ss_pred C
Confidence 3
No 181
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=413.56 Aligned_cols=219 Identities=26% Similarity=0.424 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ..
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 76 (501)
T PRK10762 3 ALLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS 76 (501)
T ss_pred ceEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999998532 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+....+ + .+.++.+++++++++.+||. +..++++++||||||||++||+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 77 QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR--FSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHH
Confidence 3568999999999999999999998754332 1 22334456788999999997 3689999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..|+++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999999986 4589999999999999999999999999999999987654
No 182
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=412.85 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCcH--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDM-- 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~~-- 319 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++....
T Consensus 4 ~~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 47999999999973 5699999999999999999999999999999999999996 8999999999985422
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+..++.+||+||++.+++.+|++||+.+....+ + .+.++..++++++++.+++. +..++++++||||||||++||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD--INPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHHHH
Confidence 234578999999999999999999998865432 2 23334556789999999996 478999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999986 4689999999999999999999999999999999987654
No 183
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=377.23 Aligned_cols=222 Identities=24% Similarity=0.417 Sum_probs=194.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
+.++++||+|+|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 20 ~~l~i~nl~~~~~~------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 20 PAMAAVNLTLGFAG------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred cEEEEeeEEEEECC------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 47899999999973 5799999999999999999999999999999999999986 79999999998854
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCC--CcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHG--GVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~--~~~~~~~~~LSgG~kqrl 393 (568)
.....++.++|+||++.+++ +|++||+.+.....+ .+.++..+.+.++++.+++.+. +..++.+.+||||||||+
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred chhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 23356788999999999888 799999987543322 2334445567788999998520 135788999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999987656999999999999999999999999999999999998865
No 184
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-46 Score=378.42 Aligned_cols=219 Identities=23% Similarity=0.346 Sum_probs=191.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--------ceEEEECCeeCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--------SGTAYVQGLDIR 316 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--------~G~i~i~G~~i~ 316 (568)
+++++|++|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.
T Consensus 1 ml~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARRH------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEECC------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 4789999999973 56999999999999999999999999999999999999998 999999999885
Q ss_pred C-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 317 T-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 317 ~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
. ...+.++.++|+||++.++..+|++||+.+..... +...++..++++++++.+++. +..++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~q 152 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT--ALVGRDVTTLSGGELA 152 (272)
T ss_pred cCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH--hhhcCCcccCCHHHHH
Confidence 4 33455667999999987666689999998743211 111233456788999999996 4789999999999999
Q ss_pred HHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 392 RLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 392 rl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
|++|||||+ .+|+++||||||+|||+.+++.++++|+++ ++ |+|||++||+++++..+|||+++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 599999999999999999999999999986 44 8999999999999999999999999999
Q ss_pred EEeecCHHHHH
Q 008362 461 LQCIGNPKELK 471 (568)
Q Consensus 461 l~~~g~~~~l~ 471 (568)
++..|+++++.
T Consensus 233 i~~~g~~~~~~ 243 (272)
T PRK13547 233 IVAHGAPADVL 243 (272)
T ss_pred EEEecCHHHHc
Confidence 99999988763
No 185
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-46 Score=418.88 Aligned_cols=230 Identities=25% Similarity=0.355 Sum_probs=200.1
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.++++++||+|.|+.+.+ ...+.+++|+||+|++||++||+|+||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999963110 012469999999999999999999999999999999999999999999999998854
Q ss_pred c----HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 318 D----MDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ~----~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
. ....+++|||+||++ .+++.+||.||+.+....++. ..++.++++.++++.+||.. +..++++++||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~-~~~~~~~~~LSgGqr 469 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP-EHAWRYPHEFSGGQR 469 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH-HHhhCCcccCCHHHH
Confidence 2 123567899999997 589999999999886555443 23445678899999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||+|||||+.+|++|||||||+|||+.++++++++|+++ ++ |.|||++|||++++..+||||++|++|++++.|+++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~ 549 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRR 549 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999986 43 899999999999999999999999999999999999
Q ss_pred HHHHh
Q 008362 469 ELKAR 473 (568)
Q Consensus 469 ~l~~~ 473 (568)
++...
T Consensus 550 ~i~~~ 554 (623)
T PRK10261 550 AVFEN 554 (623)
T ss_pred HHhcC
Confidence 98653
No 186
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-47 Score=349.92 Aligned_cols=222 Identities=25% Similarity=0.456 Sum_probs=205.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
+.++++||.|+||. ..+|++|||+.++|+++.|+|.+||||||++|||.=+..|++|.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~G~------~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRYGE------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhccc------chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 46999999999984 679999999999999999999999999999999999999999999999998731
Q ss_pred --------cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 318 --------DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 318 --------~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+.+++|.++|++||+.+||..||+.||+.- ....-|.++.+..++++.+|.++|+. +.++.++..||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~--ek~~~YP~~LSGG 156 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA--EKADAYPAHLSGG 156 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch--hhhhcCccccCch
Confidence 234678899999999999999999999865 33455788888999999999999997 4789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+||++|||||+.+|+++++|||||+|||+-..++.+.++++ .+|+|.+++||.|..|...+++++++++|.+-+.|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 999999999999999999999999999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHh
Q 008362 468 KELKAR 473 (568)
Q Consensus 468 ~~l~~~ 473 (568)
+++...
T Consensus 237 ~qvf~n 242 (256)
T COG4598 237 EQVFGN 242 (256)
T ss_pred HHHhcC
Confidence 998654
No 187
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=373.98 Aligned_cols=221 Identities=23% Similarity=0.347 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~- 317 (568)
..+.+++++++|++ +.+++|+||++++||++||+|+||||||||+++|+|+++| ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYGN------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeCC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 57999999999973 5799999999999999999999999999999999999986 79999999998853
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.++ .+|+.||+.+.....+. .++..++++++++.+++.+ .+..++++++||||||||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence 2234577899999999888 48999999987554432 2334567889999999852 1134678899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE--------CCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV--------DGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~--------~G~l~~~g 465 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|++.++++|||++||+++++..+|||+++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999988678999999999999999999999996 89999999
Q ss_pred CHHHHHH
Q 008362 466 NPKELKA 472 (568)
Q Consensus 466 ~~~~l~~ 472 (568)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14263 239 PTAQIFQ 245 (261)
T ss_pred CHHHHHh
Confidence 9998865
No 188
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-46 Score=369.34 Aligned_cols=219 Identities=22% Similarity=0.423 Sum_probs=184.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|+++.|++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....+
T Consensus 2 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 3789999999963 2469999999999999999999999999999999999999999999999998753 344567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+.+||+||++.+++. |++||+.++.... ...+..+ .+++.++.+ ++. ...++++.+||||||||++||
T Consensus 77 ~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYD--TVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCccccc--CHhhcCCCcCCHHHHHHHHHH
Confidence 789999999988886 9999998753211 1111111 122333333 443 245677899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++. |||+++|++|++...|+.+++.+++
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999999999987679999999999999975 9999999999999999998887654
No 189
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=373.93 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=194.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-----ceEEEECCeeCCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-----SGTAYVQGLDIRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-----~G~i~i~G~~i~~- 317 (568)
+.++++|++|+|++ +.+++|+||++++||++||+|+||||||||+++|+|+.+|+ +|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~~------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYDT------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeCC------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 36999999999973 46999999999999999999999999999999999999986 8999999998742
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC-CchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL-KGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
....+++.++|+||++.+++ +|++||+.+.....+. +..+..+++.++++.+++.+ .+..++++.+||||||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158 (261)
T ss_pred ccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHH
Confidence 23456788999999998888 8999999886544443 23344567888999998842 124688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC-----CEEEeec
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD-----GSLQCIG 465 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~-----G~l~~~g 465 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++ + +|+|||++||+++++..+|||+++|++ |+++..|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 99999999999999999999999999999999999985 3 589999999999999999999999999 9999999
Q ss_pred CHHHHHH
Q 008362 466 NPKELKA 472 (568)
Q Consensus 466 ~~~~l~~ 472 (568)
+++++.+
T Consensus 239 ~~~~~~~ 245 (261)
T PRK14258 239 LTKKIFN 245 (261)
T ss_pred CHHHHHh
Confidence 9999865
No 190
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.5e-44 Score=433.80 Aligned_cols=217 Identities=26% Similarity=0.404 Sum_probs=192.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~ 320 (568)
..++++||++.|+.+. +++.+|+|||+++++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~--~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~--- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKK--EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS--- 832 (1394)
T ss_pred ceEEEEeeEEEecCCC--CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---
Confidence 3589999999996321 24679999999999999999999999999999999999987 789999999999842
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC----CCChhHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG----KYSGGMKRRL 393 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~----~LSgG~kqrl 393 (568)
..|+.+|||||++.+++.+||+||+.+.+.++. .+.++..++++++++.++|. +.+|+.++ +||||||||+
T Consensus 833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~--~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME--SYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh--hhCCCeeCCCCCCCCHHHhhHH
Confidence 467889999999999999999999999887653 23445567899999999996 47888887 7999999999
Q ss_pred HHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH-HHHhCCEEEEEECC-EEEeecCH
Q 008362 394 SVAISLIGNPK-VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE-AEALCDRLGIFVDG-SLQCIGNP 467 (568)
Q Consensus 394 ~la~Al~~~p~-lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e-~~~l~dri~il~~G-~l~~~g~~ 467 (568)
+||+||+.+|+ +++|||||+|||+.+++.+++.|+++ ++|+|||++||+++. +...|||+++|++| ++++.|++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 99999999997 99999999999999999999999986 579999999999986 45789999999997 99999997
No 191
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.3e-46 Score=373.19 Aligned_cols=222 Identities=25% Similarity=0.371 Sum_probs=190.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCC-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~- 317 (568)
++++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +..
T Consensus 2 ~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (253)
T TIGR02323 2 PLLQVSGLSKSYGG------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL 75 (253)
T ss_pred ceEEEeeeEEEeCC------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC
Confidence 36999999999973 468999999999999999999999999999999999999999999999987 543
Q ss_pred cHH----HhhcceEEEcCCCC--CCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 318 DMD----RIYTSMGVCPQEDL--LWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 318 ~~~----~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
... ..++.+||+||++. +++.+|+.||+.+... .......+..+.+.++++.+++.+ ...++.+++||||||
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 76 SEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP-TRIDDLPRAFSGGMQ 154 (253)
T ss_pred CHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh-hhhhcCchhcCHHHH
Confidence 111 12467999999974 4566799999875322 111112234567889999999952 368999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|++. + .|.|||++||+++++..+|||+++|++|+++..|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999885 4 3899999999999999999999999999999999998
Q ss_pred HHHH
Q 008362 469 ELKA 472 (568)
Q Consensus 469 ~l~~ 472 (568)
++..
T Consensus 235 ~~~~ 238 (253)
T TIGR02323 235 QVLD 238 (253)
T ss_pred HHhc
Confidence 8865
No 192
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.4e-46 Score=364.25 Aligned_cols=200 Identities=25% Similarity=0.412 Sum_probs=177.4
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--c---HHHh
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--D---MDRI 322 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~---~~~~ 322 (568)
++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ....
T Consensus 1 i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFGD------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEECC------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 4789999973 569999999999999999999999999999999999999999999999998642 1 1235
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||++|++.+++.+|++||+.+.....+....+..++++++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qr~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN--LKLKQKIYELSGGEQQRVALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch--hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 678999999999999999999999865555544455567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|+++||||||+|||+.+++.+++.|++. ++|+|||++||+++.++ +|||+++|
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 9999999999999999999999999986 45899999999999775 79999875
No 193
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-46 Score=411.05 Aligned_cols=219 Identities=26% Similarity=0.381 Sum_probs=194.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH-H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD-R 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~-~ 321 (568)
++++++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .. .
T Consensus 4 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999998642 22 2
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh----hcCC---CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR----LKNL---KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~----l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.++.+||+||++.+++.+|++||+.+... ..+. +.++..+++.++++.+||. +..++++++||||||||++
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK--VDLDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 34679999999999999999999986432 1121 2234556788999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|++++.|+++++
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999998764
No 194
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.1e-46 Score=400.59 Aligned_cols=236 Identities=25% Similarity=0.397 Sum_probs=207.2
Q ss_pred CCCeEEEEeEEEEcCCCC-----CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC-
Q 008362 242 TSHAIISDNLRKIYPGRD-----GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI- 315 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~-----~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i- 315 (568)
..+.++++||+|.|+.++ ..+...|++||||++.+||++||+|++|||||||.|+|+|+.+|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 456799999999998532 12246899999999999999999999999999999999999999999999999873
Q ss_pred -CC-cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 316 -RT-DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 316 -~~-~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
.. ...+.|+++-++||++ .|.|.+||++++.-...+++.. ..+.++++.++++.++|.. ++.++++++||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~-~~l~ryP~elSGGQr 435 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPP-EFLDRYPHELSGGQR 435 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCH-HHHhcCchhcCcchh
Confidence 21 2345677888888876 6999999999999887766533 4566678999999999984 689999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|++|++|||||.||+..+..+.++|++++ -|.|.|++||||+.++.+||||++|.+|++++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999999999974 3999999999999999999999999999999999999
Q ss_pred HHHHhcCCcE
Q 008362 469 ELKARYGGSY 478 (568)
Q Consensus 469 ~l~~~~~~~~ 478 (568)
++.+...+.|
T Consensus 516 ~v~~~p~h~Y 525 (539)
T COG1123 516 KVFENPQHPY 525 (539)
T ss_pred HHhcCCCChH
Confidence 9887654443
No 195
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.1e-46 Score=367.61 Aligned_cols=215 Identities=28% Similarity=0.431 Sum_probs=186.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 321 (568)
.+.++|++++|++.+ ..+++++|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. ..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQ 78 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HH
Confidence 467899999997531 12679999999999999999999999999999999999999 999999999998753 35
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHH-HHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEE-SLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+.....+. .......++++ .++.++++ +..++.+++||||||||+++||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT--RIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch--hhhcccccCcCHHHHHHHHHHH
Confidence 678899999999999999999999986554321 11222234555 89999996 3778999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeec
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g 465 (568)
||+.+|+++||||||+|||+.+++.+++++++. ++|+|+|++||++ +++..+|||+++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999986 4589999999999 6999999999999999998765
No 196
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1e-45 Score=372.94 Aligned_cols=218 Identities=21% Similarity=0.292 Sum_probs=189.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCCcHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~ 320 (568)
.++++|++|.|+ +.+++|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~~~-------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~ 75 (254)
T PRK10418 4 QIELRNIALQAA-------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CA 75 (254)
T ss_pred EEEEeCeEEEec-------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cc
Confidence 689999999993 3599999999999999999999999999999999999999 99999999998853 22
Q ss_pred HhhcceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~la~ 397 (568)
..++.+||+||++. +.+.+|+.+++.+.....+... .++++.++++.+++.+. ...++++.+||||||||++|||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 76 LRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred cccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23467999999974 4566899999877554444322 23678899999999631 1468999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++||+++++..+|||+++|++|+++..|+++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 999999999999999999999999999999986 4 38999999999999999999999999999999999998865
No 197
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=375.54 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=192.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.++|+++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGG------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCC------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 358999999999973 4699999999999999999999999999999999999863 69999999998853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqr 392 (568)
.....++.+||+||++.+++. |+.||+.+....++.. ...++.+.++++.+++.. .+..++++.+||||||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred ccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH
Confidence 223457889999999988875 9999998765443322 223455677888888731 125688999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE---------CCEEEe
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV---------DGSLQC 463 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~---------~G~l~~ 463 (568)
++|||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||+++++..+|||+++|+ +|+++.
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999987668999999999999999999999998 899999
Q ss_pred ecCHHHHHH
Q 008362 464 IGNPKELKA 472 (568)
Q Consensus 464 ~g~~~~l~~ 472 (568)
.|+++++..
T Consensus 250 ~g~~~~~~~ 258 (274)
T PRK14265 250 FSPTEQMFG 258 (274)
T ss_pred eCCHHHHHh
Confidence 999999864
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.6e-46 Score=408.72 Aligned_cols=215 Identities=26% Similarity=0.451 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~ 322 (568)
++++++||+|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 47999999999973 5699999999999999999999999999999999999999999999999988542 2222
Q ss_pred -hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 -YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 -r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++.+||+||++.+++.+|++||+.+.... .++.+++++++++.++|. +..++++++||||||||++|||||+.
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQ--LDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCC--ccccCChhhCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999875321 234456788999999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 158 DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999986 4689999999999999999999999999999999998765
No 199
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=370.53 Aligned_cols=222 Identities=26% Similarity=0.458 Sum_probs=194.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT-- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~-- 317 (568)
+++++||++.|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 3 ~l~~~~v~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDD------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 5889999999973 569999999999999999999999999999999999864 489999999998853
Q ss_pred -cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCC--CCcccccCCCCChhHHHHH
Q 008362 318 -DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 -~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl 393 (568)
.....++.+||+||++.+++. |++||+.+.....+.. .+..++++.++++.+++.+ .+..++++.+||||||||+
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRL 155 (250)
T ss_pred ccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHH
Confidence 234567889999999999985 9999998764443322 2345677888999998842 1246889999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+.++|++.++++|||++||+++++..+|||+++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999877789999999999999999999999999999999999998543
No 200
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=382.86 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=195.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~~ 317 (568)
..+|+++|++++|.+. .+.+|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~----~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR----TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 3579999999999631 3569999999999999999999999999999999999986 579999999999853
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh-HHHHHHHHHHHcCCCC--CCcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA-LTQAVEESLKSVNLFH--GGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~-~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~kq 391 (568)
....+|+.+|||||++.+++ .|++||+.+.....+...++ .++.+.++++.++|.+ ++..++++.+|||||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred cccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 23456889999999999886 69999999765444433332 2345678888888742 12468899999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|++||||++.+|+++||||||+|||+.+++.+.+.|++..+++|||++||+++++..+||||++|++|++++.|+++++.
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998777899999999999999999999999999999999999986
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
.
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 4
No 201
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.8e-46 Score=368.34 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=180.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCCcHHHhhcceEEEcCCCC--CCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL--LWETL 339 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~--l~~~l 339 (568)
+++|+||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... +..++.+||+||++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988542 223368999999984 56778
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|++||+.+.....+....+.++++.++++.+++.+. +..++++.+||||||||++||||++.+|+++||||||+|||+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 999999876554443334455678999999999620 2578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 419 SRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 419 ~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+++.+++.|++++ .|+|||++||+++++..+|||+++|++|++++.|+++++..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999863 38999999999999999999999999999999999998864
No 202
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.4e-46 Score=369.40 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=183.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 1 l~i~~l~~~~~~~~---~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSFRYPSRP---DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEEecCCCC---CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46899999997421 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+....+ ..++..+ .+.+.++.+ ++. ...++++.+||||||||++||+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYD--TLVGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccc--eeeccCCccCCHHHHHHHHHHH
Confidence 8999999998887 59999998753221 1111111 122333333 443 3567888999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||+.+|+++||||||+|||+.+++.+++.|++.++|+|||++||++++++ .|||+++|++|+++..|+.+++....
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999999999999998767899999999999997 79999999999999999998886543
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2e-45 Score=373.67 Aligned_cols=227 Identities=24% Similarity=0.354 Sum_probs=194.9
Q ss_pred eEEEEeEEEEcCCC---CCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---
Q 008362 245 AIISDNLRKIYPGR---DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--- 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~---~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--- 318 (568)
+|+++||+|.|++. .++.++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 68999999999731 000125799999999999999999999999999999999999999999999999987532
Q ss_pred -HHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 -MDRIYTSMGVCPQED--LLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 -~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
....++.+||+||++ .+++..|+.|++.+... ..+....+..++++++++.+++.. ...++++.+||||||||++
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh-hHhhCCCccCChHHHHHHH
Confidence 134577899999997 46778999999876433 223334444567899999999952 3678999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+.++|+++. + |+|||++||+++++..+|||+++|++|+++..|+++++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 9999999999999999999999999999999999863 3 8999999999999999999999999999999999988753
No 204
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-45 Score=360.93 Aligned_cols=201 Identities=29% Similarity=0.376 Sum_probs=180.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.......++
T Consensus 1 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERDE------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEECC------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999998654455678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
+++|++|++.+++.+|+.||+.+....++. +..++++++++.+|+. +..++++++||||||||++||+|++.+|+
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLA--GFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCH--HHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999987655432 2346788999999996 36899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+++|||||+|||+.+++.++++|++. ++|+|||++||+++++++..+|++.+
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999986 46899999999999999977888666
No 205
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=9.4e-46 Score=366.57 Aligned_cols=212 Identities=25% Similarity=0.367 Sum_probs=183.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++|+++||+|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 47999999999973 469999999999999999999999999999999999999999999999998854 33446
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++. |++||+.+....++.. ...++++++++.+++.+ ...++++.+||||||||++|||||+.+
T Consensus 80 ~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 80 RQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPD-TILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred HhccEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCCh-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 6789999999998875 9999998765444321 22456788999999952 367899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEE-CCEEEeecC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFV-DGSLQCIGN 466 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~-~G~l~~~g~ 466 (568)
|+++||||||+|||+.+++.+.++|++. + .|+|||++||++++++ .|||+++|+ ++..+.+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999999999999999986 3 4899999999999997 599999995 454455554
No 206
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-45 Score=371.47 Aligned_cols=223 Identities=21% Similarity=0.358 Sum_probs=193.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCC-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIR- 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~- 316 (568)
...|+++|++|+|++ +.+++|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGG------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 346999999999973 4699999999999999999999999999999999999875 7999999998763
Q ss_pred --C--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCC--CCcccccCCCCChhH
Q 008362 317 --T--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFH--GGVADKQAGKYSGGM 389 (568)
Q Consensus 317 --~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~--~~~~~~~~~~LSgG~ 389 (568)
. .....++.+||+||++.+++. |++||+.+.....+.... ..++++.++++.+++.+ .+..++++.+|||||
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 166 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQ 166 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHH
Confidence 1 233567789999999999986 999999876544444332 23467788888888731 135678999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|||++|||||+.+|+++||||||+|||+.+++.+.+.|+++++++|||++||+++++..+|||+++|++|++++.|+.++
T Consensus 167 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 246 (265)
T PRK14252 167 QQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDT 246 (265)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987667999999999999999999999999999999999988
Q ss_pred HHH
Q 008362 470 LKA 472 (568)
Q Consensus 470 l~~ 472 (568)
+..
T Consensus 247 ~~~ 249 (265)
T PRK14252 247 IFI 249 (265)
T ss_pred HHh
Confidence 864
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=415.22 Aligned_cols=228 Identities=21% Similarity=0.339 Sum_probs=198.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC------
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR------ 316 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~------ 316 (568)
.++|+++||++.|+... +.+++++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~--~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQ--QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCC--CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 34799999999996321 1257999999999999999999999999999999999999999999999997541
Q ss_pred ----C-cH---HHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCC-CCcccccCC
Q 008362 317 ----T-DM---DRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFH-GGVADKQAG 383 (568)
Q Consensus 317 ----~-~~---~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~ 383 (568)
. .. .+.| +.|||+||++ .+++.+||+||+.+..+.+ +.+.++.++++.++++.+||.+ ....++++.
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 1 11 1233 4799999997 6889999999999876653 5555666778999999999952 125789999
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+|||||||||+||+||+.+|++|||||||+|||+.++++++++++++. + |+|||++|||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999863 4 89999999999999999999999999999
Q ss_pred EeecCHHHHHH
Q 008362 462 QCIGNPKELKA 472 (568)
Q Consensus 462 ~~~g~~~~l~~ 472 (568)
+..|+++++..
T Consensus 248 ~~~g~~~~~~~ 258 (623)
T PRK10261 248 VETGSVEQIFH 258 (623)
T ss_pred cccCCHHHhhc
Confidence 99999988754
No 208
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-45 Score=363.23 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=185.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----HHH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----MDR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~~~ 321 (568)
++++|+++.|++.. +.+.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 2 l~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 2 ISIRNLNHYYGHGS--LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred EEEEEEEEEccCCC--cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 78999999997421 125799999999999999999999999999999999999999999999999988531 124
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+|+.||+.+...... ...++..+++.++++.+++. +..++++.+||||||||+++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG--DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh--hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999998765442 34445567789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.+|+++||||||+|||+.+++.+.++|++.. +++|||++||+++.. .+||++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999853 489999999999864 68999999999986
No 209
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-45 Score=394.41 Aligned_cols=237 Identities=24% Similarity=0.388 Sum_probs=210.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----ceEEEECCeeCCC--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----SGTAYVQGLDIRT-- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----~G~i~i~G~~i~~-- 317 (568)
+.++++||++.|...++ ...||+||||++.+||++||+|.+||||||+.++|.|++++. +|+|.++|.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~--~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGG--RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCc--ceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 37999999999986522 357999999999999999999999999999999999999987 8999999998743
Q ss_pred --cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 318 --DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 --~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
...++| +.|+|+||++ .|.|-+|+.+.+.-..++++ .++++.++++.++|+.++|.+....++++++|||||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 223344 5799999996 57777999999988777765 45778889999999999998633335799999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
|+.||+||+.+|++||+||||++||+..+.++.++|+++. .|.++|++|||++.+.++||||++|.+|++++.|++++
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~ 241 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEE 241 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999999863 59999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEE
Q 008362 470 LKARYGGSYVFTM 482 (568)
Q Consensus 470 l~~~~~~~~~l~~ 482 (568)
+.+++.+.|+-.+
T Consensus 242 i~~~p~hpYT~~L 254 (539)
T COG1123 242 ILSNPQHPYTRGL 254 (539)
T ss_pred HHhccCCcccHHH
Confidence 9999999997554
No 210
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-45 Score=364.21 Aligned_cols=206 Identities=25% Similarity=0.446 Sum_probs=176.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++|.|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQ----EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred EEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 7899999999631 2469999999999999999999999999999999999999999999999998753 3344567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc-----------CCCCChhHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ-----------AGKYSGGMKRRL 393 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~~~LSgG~kqrl 393 (568)
.+||+||++.+++ .|+.||+.+..... ..+++.++++.+++.+ ..++. +.+||||||||+
T Consensus 79 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~~~~~~LSgG~~qrl 149 (220)
T cd03245 79 NIGYVPQDVTLFY-GTLRDNITLGAPLA------DDERILRAAELAGVTD--FVNKHPNGLDLQIGERGRGLSGGQRQAV 149 (220)
T ss_pred hEEEeCCCCcccc-chHHHHhhcCCCCC------CHHHHHHHHHHcCcHH--HHHhccccccceecCCCccCCHHHHHHH
Confidence 8999999998887 69999997643211 1235567788888752 44443 469999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||++.+|+++||||||+|||+.+++.+++.|++..+++|||++||+++++ ++|||+++|++|+++..|
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999876569999999999987 589999999999997654
No 211
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.6e-45 Score=366.84 Aligned_cols=220 Identities=20% Similarity=0.286 Sum_probs=188.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~~ 320 (568)
.+++++||++.|++ +.+++|+||++++||++||+|+||||||||+++|+|+ ++|++|+|+++|.++... ..
T Consensus 6 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 79 (252)
T CHL00131 6 PILEIKNLHASVNE------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE 79 (252)
T ss_pred ceEEEEeEEEEeCC------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh
Confidence 37999999999973 4699999999999999999999999999999999998 589999999999988542 22
Q ss_pred Hhhc-ceEEEcCCCCCCCCCCHHHHHHHHhhhc----CC---CchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHH
Q 008362 321 RIYT-SMGVCPQEDLLWETLTGREHLLFYGRLK----NL---KGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKR 391 (568)
Q Consensus 321 ~~r~-~ig~~~Q~~~l~~~lTv~e~l~~~~~l~----~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kq 391 (568)
..++ .++|+||++.+++.+|+.+++.+..... +. ...+..+++.++++.+++.+ ...++++. +|||||||
T Consensus 80 ~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 80 ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP-SFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch-hhhccccccCCCHHHHH
Confidence 2222 5889999999999999999998754321 11 11233456788999999962 35678887 59999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~ 469 (568)
|++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||++++++.+ |||+++|++|+++..|+++.
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999999999986 4589999999999999887 99999999999999999874
Q ss_pred H
Q 008362 470 L 470 (568)
Q Consensus 470 l 470 (568)
+
T Consensus 239 ~ 239 (252)
T CHL00131 239 A 239 (252)
T ss_pred h
Confidence 4
No 212
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.2e-45 Score=367.03 Aligned_cols=198 Identities=32% Similarity=0.488 Sum_probs=175.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..... ..+|+||++.+++.+|++||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP----DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh----hheEEecCcccCCCCCHHHHHH
Confidence 578999999999999999999999999999999999999999999998854221 2489999999999999999998
Q ss_pred HHhh--hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 347 FYGR--LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 347 ~~~~--l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
+... ..+...++.++++.++++.+++. +..++++++||||||||++|||||+.+|+++||||||+|||+.+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLT--EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCH--HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 7532 22333344556788999999996 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 425 NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 425 ~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+.|++. + .|+|||++||+++++..+|||+++|++|++++.|++.++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999885 4 489999999999999999999999999999988876544
No 213
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-45 Score=375.16 Aligned_cols=224 Identities=24% Similarity=0.427 Sum_probs=192.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-----CCceEEEECCeeCC
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-----TTSGTAYVQGLDIR 316 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-----p~~G~i~i~G~~i~ 316 (568)
...+|+++||++.|++ +.+|+++||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 42 ~~~~l~i~nl~~~~~~------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 42 GDAKLSVEDLDVYYGD------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCceEEEEEEEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3457999999999973 469999999999999999999999999999999999986 68999999999885
Q ss_pred C---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc------------CCCc-hhHHHHHHHHHHHcCCCC--CCcc
Q 008362 317 T---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK------------NLKG-PALTQAVEESLKSVNLFH--GGVA 378 (568)
Q Consensus 317 ~---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~------------~~~~-~~~~~~~~~~l~~~~L~~--~~~~ 378 (568)
. .....++.+||+||++.+++. |++||+.+..... +... ...++++.++++.+++.+ .+..
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 3 234567889999999988884 9999999754322 1111 223566888999998841 1356
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE-EEEE
Q 008362 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL-GIFV 457 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri-~il~ 457 (568)
++++.+||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++.+++|||++||+++++..+|||+ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 889999999999999999999999999999999999999999999999999766799999999999999999997 5679
Q ss_pred CCEEEeecCHHHHHH
Q 008362 458 DGSLQCIGNPKELKA 472 (568)
Q Consensus 458 ~G~l~~~g~~~~l~~ 472 (568)
+|++++.|+++++.+
T Consensus 275 ~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 275 GGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCHHHHHh
Confidence 999999999988754
No 214
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.3e-45 Score=358.50 Aligned_cols=202 Identities=23% Similarity=0.272 Sum_probs=181.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++|++|.|++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRNE------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRS 81 (214)
T ss_pred ceEEEeeEEEecCC------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhh
Confidence 47999999999973 4699999999999999999999999999999999999999999999999988642 335
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.++|++|++.+++.+|++||+.+....++. ...+.++++++.+++. +..++++.+||||||||+++|||++.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLA--GYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCCh--hhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 6799999999999999999999887655442 2345678899999996 3689999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++++|||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999875 5689999999999999999999999864
No 215
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=371.10 Aligned_cols=218 Identities=21% Similarity=0.382 Sum_probs=185.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++++|++|+|++ ++.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+
T Consensus 5 ~~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~ 77 (272)
T PRK15056 5 AGIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQK 77 (272)
T ss_pred ceEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhcc
Confidence 36999999999963 2569999999999999999999999999999999999999999999999998742 1123
Q ss_pred cceEEEcCCCCCC--CCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLW--ETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 324 ~~ig~~~Q~~~l~--~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
+.+||+||++.+. ...+++|++.+... ..+....+.+++++++++.+||. +..++++.+||||||||++|||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV--EFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHH
Confidence 4699999997652 23478888865311 11112233455678899999996 3789999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||+.+|++++|||||+|||+.+++.+.++|++.+ +|+|||++||+++++..+|||++++ +|+++..|+++++.
T Consensus 156 aL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999864 5899999999999999999999777 89999999988763
No 216
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.6e-45 Score=372.17 Aligned_cols=213 Identities=23% Similarity=0.445 Sum_probs=188.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ...+|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.. ....+|
T Consensus 2 ~i~~~nls~~~~~~----~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEG----GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 38899999999631 2469999999999999999999999999999999999997 78999999999854 455678
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKRR 392 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kqr 392 (568)
+.++||||++.+|+. |++||+..+.. .+ .+++.++++.+||. ++.++.+.. ||||||||
T Consensus 77 ~~i~~v~q~~~lf~~-tv~~nl~~~~~---~~----~~~~~~~l~~~gL~--~~~~~~p~~l~~~~~~~g~~LS~G~~qr 146 (275)
T cd03289 77 KAFGVIPQKVFIFSG-TFRKNLDPYGK---WS----DEEIWKVAEEVGLK--SVIEQFPGQLDFVLVDGGCVLSHGHKQL 146 (275)
T ss_pred hhEEEECCCcccchh-hHHHHhhhccC---CC----HHHHHHHHHHcCCH--HHHHhCcccccceecCCCCCCCHHHHHH
Confidence 899999999999985 99999975421 11 24577888899996 367777766 99999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||++.+|++++|||||+|||+.+++.+.+.|++..+++|||++||+++++.. ||||++|++|+++..|+++++.+
T Consensus 147 l~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred HHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 99999999999999999999999999999999999987779999999999999875 99999999999999999999977
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 226 ~ 226 (275)
T cd03289 226 E 226 (275)
T ss_pred C
Confidence 3
No 217
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=4.3e-45 Score=367.16 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=184.8
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+.++ +|+|.++|+++.. .....++.
T Consensus 2 ~~~~l~~~----------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS----------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARH 70 (248)
T ss_pred cccccchh----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhh
Confidence 46777763 179999999999999999999999999999999999864 9999999999854 33455677
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---- 401 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~---- 401 (568)
+||+||++.+++.+|++||+.+.... +.+.++..++++++++.++|. +..++++++||||||||++||+||+.
T Consensus 71 i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 71 RAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLD--DKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred eEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 99999998888889999999876322 223344466789999999996 47899999999999999999999997
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 ---NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ---~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+.++|++++ +|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 779999999999999999999999999864 6899999999999999999999999999999999988764
No 218
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=401.61 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=191.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
++++++|++|.|++ +.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 3 ~~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 47999999999973 469999999999999999999999999999999999999999999999999853 2234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhh--hcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGR--LKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++.+||+||++.+++.+|++||+.+... ..+ ....+.++++.++++.+++. +..++++.+||||||||++||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD--IDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC--CCcCCchhhCCHHHHHHHHHHHH
Confidence 56789999999999999999999987532 122 23344566789999999996 36789999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999986 4689999999999999999999999999999877653
No 219
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.3e-45 Score=360.02 Aligned_cols=201 Identities=29% Similarity=0.415 Sum_probs=176.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
+.++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------- 88 (224)
T cd03220 23 LGILGRKGEVGE------FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------- 88 (224)
T ss_pred hhhhhhhhhcCC------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------
Confidence 678899999973 679999999999999999999999999999999999999999999999987531
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
..+...+++.+|++||+.+.....+....+.++++.++++.+++. +..++++++||||||||++|||||+.+|++
T Consensus 89 ---~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~laral~~~p~l 163 (224)
T cd03220 89 ---LGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG--DFIDLPVKTYSSGMKARLAFAIATALEPDI 163 (224)
T ss_pred ---hcccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 111234456789999999876655544445556788899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++|++|++++.|
T Consensus 164 lllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999986 45899999999999999999999999999998765
No 220
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.5e-45 Score=360.05 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=178.8
Q ss_pred eEEEEeEEEEcCCCCCCC-ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC--Ce--eCCC-c
Q 008362 245 AIISDNLRKIYPGRDGNP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ--GL--DIRT-D 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~-~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~--G~--~i~~-~ 318 (568)
+++++|++|.|+++.+.+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++.. .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 478999999996321001 2469999999999999999999999999999999999999999999998 43 4432 1
Q ss_pred HH---Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 319 MD---RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 319 ~~---~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.. +. ++.+||+||++.+++.+|++||+.+.....+...++..+++.++++.+++.+ ...++++.+||||||||++
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-RLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhhCCcccCCHHHHHHHH
Confidence 11 22 4579999999999999999999987654444444455667889999999963 2458899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|||||+.+|++++|||||+|||+.+++.+.+.|++.+ +|+|||++||++++++.+|||++.+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999864 5899999999999999999999875
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=7.8e-45 Score=402.27 Aligned_cols=229 Identities=29% Similarity=0.444 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC-Cee---CCC-
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ-GLD---IRT- 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~-G~~---i~~- 317 (568)
.++++++||++.|++.. .+.+.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++ |.+ +..
T Consensus 277 ~~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 45799999999996310 012569999999999999999999999999999999999999999999996 643 221
Q ss_pred ---cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC---CcccccCCCCChhHHH
Q 008362 318 ---DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG---GVADKQAGKYSGGMKR 391 (568)
Q Consensus 318 ---~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~---~~~~~~~~~LSgG~kq 391 (568)
.....++++||+||++.+++.+|++||+.+...+ +.+.++.++++.++++.++|.+. +..++++.+|||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q 434 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH 434 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence 1123456799999999999999999999875433 22333345678899999999631 2578999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|++++
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999986 34 8999999999999999999999999999999999988
Q ss_pred HHHh
Q 008362 470 LKAR 473 (568)
Q Consensus 470 l~~~ 473 (568)
+.++
T Consensus 515 ~~~~ 518 (520)
T TIGR03269 515 IVEE 518 (520)
T ss_pred HHhh
Confidence 7654
No 222
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-45 Score=362.10 Aligned_cols=216 Identities=23% Similarity=0.455 Sum_probs=181.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999963 2469999999999999999999999999999999999999999999999998854 3445677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.+||+||++.+++ .|++||+.+.... .+..+..+ .+.+.++.+ ++. ...++++.+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYD--TIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHHHHH
Confidence 8999999999886 6999999875321 11111111 122333333 333 3467788999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
||+.+|+++||||||+|||+.+++.+.++|++.++|+|||++||+.+++.. |||+++|++|+++..|+.+++..
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999987559999999999999976 99999999999999999988765
No 223
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5e-45 Score=403.80 Aligned_cols=221 Identities=28% Similarity=0.401 Sum_probs=193.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEEC------------
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQ------------ 311 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~------------ 311 (568)
|+++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 468999999963 56999999999999999999999999999999999997 7999999997
Q ss_pred -----------CeeCC-------C-c---HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 008362 312 -----------GLDIR-------T-D---MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLK 368 (568)
Q Consensus 312 -----------G~~i~-------~-~---~~~~r~~ig~~~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~ 368 (568)
|.++. . . ....|+.+||+||+ +.+++.+|++||+.+.....+.+.++.++++.++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33221 0 0 12346789999997 688899999999998665555555556678999999
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHH
Q 008362 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEA 446 (568)
Q Consensus 369 ~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~ 446 (568)
.+||. +..++++++||||||||++|||||+.+|+++||||||+|||+.+++.++++|+++ + .|+|||++|||++++
T Consensus 155 ~~gl~--~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 155 MVQLS--HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HcCCh--hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 99996 4789999999999999999999999999999999999999999999999999986 4 489999999999999
Q ss_pred HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 447 EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 447 ~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
..+|||+++|++|+++..|+++++..++
T Consensus 233 ~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 233 EDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 9999999999999999999998876653
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.4e-45 Score=401.16 Aligned_cols=217 Identities=23% Similarity=0.441 Sum_probs=190.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCc-H-HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++||+|.|++ +++++|+||++++||++||+||||||||||+|+|+|+.+| ++|+|.++|+++... . ..
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 789999999973 5699999999999999999999999999999999999987 799999999998642 2 23
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhc--C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLK--N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~--~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.++.+||+||++.+++.+|++||+.+..... + ...++..++++++++.+++.+ ...++++++|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA-DNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCC-CcccCchhhCCHHHHHHHHHHH
Confidence 4567999999999999999999998764332 1 223445567889999999963 2236789999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999986 468999999999999999999999999999999988754
No 225
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=401.21 Aligned_cols=215 Identities=23% Similarity=0.373 Sum_probs=190.2
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHhhcc
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTS 325 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~r~~ 325 (568)
++|++|.|++ +++++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++.
T Consensus 1 ~~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3689999973 5699999999999999999999999999999999999999999999999998532 2345678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhh-hcCC--CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGR-LKNL--KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+||+||++.+++.+||+||+.+... .++. +.++..++++++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID--IDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC--CCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999987432 2221 2334456788999999996 368999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999986 4689999999999999999999999999999999987664
No 226
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-45 Score=387.73 Aligned_cols=217 Identities=25% Similarity=0.405 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~ 320 (568)
.+.++++|++|+||+ .+||+|+||++++|||+||+|.||||||||+|+|+|.++|++|+|.++|+.+.. ..+
T Consensus 6 ~~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 347999999999984 689999999999999999999999999999999999999999999999998853 344
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC----CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN----LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.....|+.++|+..|.|+|||.||+.+...... +.+++.++++.++|+.+++.. + .+.++++||.||||.|+||
T Consensus 80 A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~-~-~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 80 ALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI-D-PDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred HHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCC-C-hhhhhhhCCHHHHHHHHHH
Confidence 455789999999999999999999987544332 456788899999999999963 3 8999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||+..+++++|||||||.|++...+.+.+++++++ +|.+||++||.|+|+.++||||.||.||+.++.++.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999975 799999999999999999999999999999998873
No 227
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.7e-45 Score=359.64 Aligned_cols=208 Identities=20% Similarity=0.392 Sum_probs=178.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++
T Consensus 3 l~~~~l~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPN----LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRS 78 (221)
T ss_pred EEEEEEEEecCCC----CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhh
Confidence 7899999999742 2469999999999999999999999999999999999999999999999998753 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
.+||+||++.+++ .|++||+.+... .. .+++.+.++.+++.+ +...++++.+||||||||++|
T Consensus 79 ~i~~~~q~~~l~~-~tv~enl~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~l 150 (221)
T cd03244 79 RISIIPQDPVLFS-GTIRSNLDPFGE---YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCL 150 (221)
T ss_pred hEEEECCCCcccc-chHHHHhCcCCC---CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHH
Confidence 8999999998887 599999975422 11 234455555555531 012357899999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
||||+.+|+++||||||+|||+.+++.++++|++.++++|||++||++++++. |||+++|++|+++..|+
T Consensus 151 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 151 ARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999987668999999999999986 99999999999998875
No 228
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-44 Score=352.96 Aligned_cols=194 Identities=21% Similarity=0.297 Sum_probs=169.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC---CCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR---TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~---p~~G~i~i~G~~i~~~~~~ 321 (568)
.+.++|++|.|+... .++.+++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGR--SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCC--CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 478999999998642 24679999999999999999999999999999999999999 8999999999998654445
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|++||+.+..... .++++.+||||||||++|||||+.
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhhhc-------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 6778999999999999999999998753210 356788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEE-EcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil-~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+|+++||||||+|||+.+++.++++++++ ++ +.|+|+ ++|+.+++..+||++++|++|+++..|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999986 33 566555 566679999999999999999998654
No 229
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.9e-45 Score=354.28 Aligned_cols=197 Identities=27% Similarity=0.389 Sum_probs=177.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||++.|++ +.+++|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|+++.......+++
T Consensus 1 l~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERDG------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeCC------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 468999999973 56999999999999999999999999999999999999999999999999876544556788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|++||+.++.... ..++++++++.+++. +..++++.+||||||||+++||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLN--GFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCCh--hhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999998864211 245678899999996 367899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+||||||+|||+.+++.+++.|++. ++|+|+|++||+.++....|+|++.+
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999886 46899999999999999999999776
No 230
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=363.37 Aligned_cols=217 Identities=22% Similarity=0.337 Sum_probs=191.5
Q ss_pred eEEEEeEEEEcCCCC--------------CCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 245 AIISDNLRKIYPGRD--------------GNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~--------------~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
.|+++||+|+|.... ....+.+++|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 588999999986531 113467999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 311 QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 311 ~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
+|. +++++|...+.+.+|+.||+.+.....+.+.++..+.++++++.+++. +..++++++||||||
T Consensus 84 ~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG--EFIYQPVKKYSSGMR 149 (264)
T ss_pred CCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHH
Confidence 984 357788877888899999998765555555555566678889999996 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
||++||+|++.+|+++||||||+|||+.+++.+++.+.+. ++|+|||++||+++++..+|||+++|++|++.+.|++++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 229 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDD 229 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999886 468999999999999999999999999999999999999
Q ss_pred HHHhcC
Q 008362 470 LKARYG 475 (568)
Q Consensus 470 l~~~~~ 475 (568)
+..++.
T Consensus 230 ~~~~~~ 235 (264)
T PRK13546 230 VLPKYE 235 (264)
T ss_pred HHHHhH
Confidence 877643
No 231
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-44 Score=353.49 Aligned_cols=202 Identities=22% Similarity=0.393 Sum_probs=174.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. .+.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...+.
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPD----LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCC----CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999998753 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+|||||++.+++. |++||+.+.. ... .+++.+.++ + ++++.+||||||||+++|||++.+
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~----~~~~~~~l~---~------~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYS----DEEIYGALR---V------SEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCC----HHHHHHHhh---c------cCCCCcCCHHHHHHHHHHHHHhhC
Confidence 7889999999988874 9999997532 111 122334333 2 467899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+++||||||+|||+.+++.++++|++..+|+|+|++||+++++.. |||+++|++|++.+.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987679999999999999976 999999999999988763
No 232
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-45 Score=333.93 Aligned_cols=215 Identities=24% Similarity=0.383 Sum_probs=195.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----H
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD----M 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~----~ 319 (568)
..|++++++|.-+... ....+|++|+|.|++||-+||+||+|||||||+-+++|+..|++|+|++.|+++..- .
T Consensus 5 ~ii~~~~l~ktvg~~~--~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 5 NIIEVHHLSKTVGQGE--GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ceeehhhhhhhhcCCC--cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 3689999999998643 357899999999999999999999999999999999999999999999999998642 2
Q ss_pred HHhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++| +++|+|||...|.|+||..||+.....++|-+..+..+...++|+.+||. +..+.++++||||+||||+||||
T Consensus 83 A~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg--~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG--KRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc--cccccCccccCchHHHHHHHHHH
Confidence 3344 68999999999999999999999999999876677778899999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++..|++++.||||.+||...-+++.+++-.+ ..|.|.+++|||...+.+ |||.+-|.+|+++.
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 99999999999999999999999999999765 359999999999999887 99999999999975
No 233
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-45 Score=339.84 Aligned_cols=222 Identities=27% Similarity=0.422 Sum_probs=201.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
++.+++++.+|++. ...+++|+|++|.+||.++++||+|||||||+|+++|+.+|+.|+|.++|..+..+-.
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---- 74 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---- 74 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc----
Confidence 57789999999863 2569999999999999999999999999999999999999999999999999865432
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.-|+|||++.|+|-+|+.||+.|..+++|+++.+..+.+.+.+..+||. +..++++-+||||||||+.|||||+.+|+
T Consensus 75 ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~--~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 75 ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE--GAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred cceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc--cccccceEeecchHHHHHHHHHHhhcCcc
Confidence 2399999999999999999999999999999999899999999999997 47799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHHhcCCc
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKARYGGS 477 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~~~~~~ 477 (568)
+++||||+++||.-.|+++.+++.++ + .|+.++++|||++|+.-+++|+++|+. ||++..-+++. .++|..|
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~df-~rR~aag 228 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLDF-ARRYAAG 228 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCCH-HHHhhcC
Confidence 99999999999999999999999884 4 599999999999999999999999985 78988877763 3444433
No 234
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=7e-45 Score=403.37 Aligned_cols=228 Identities=22% Similarity=0.368 Sum_probs=195.6
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.++++++|+++.|++..+ .+++.+++|+||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 357999999999963110 012569999999999999999999999999999999999984 89999999998853
Q ss_pred c-H---HHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 318 D-M---DRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 318 ~-~---~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
. . ...++++||+||++ .+++.+|+.||+.+....++ .+.++.++++.++++.++|.+ +..++++++|||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~ 430 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP-ETRHRYPAEFSGGQ 430 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH-HHHhcCCccCCHHH
Confidence 1 1 12467899999996 48889999999988654332 333445567889999999952 36799999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|++
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999986 33 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++.+
T Consensus 511 ~~~~~ 515 (529)
T PRK15134 511 ERVFA 515 (529)
T ss_pred HHHhc
Confidence 98854
No 235
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.7e-44 Score=360.94 Aligned_cols=220 Identities=20% Similarity=0.301 Sum_probs=185.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCC-cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~-~~~~ 321 (568)
+++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. ....
T Consensus 1 ~i~~~nl~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVED------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeCC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 4789999999973 46999999999999999999999999999999999995 6999999999998754 2222
Q ss_pred -hhcceEEEcCCCCCCCCCCHHHHHHHHh-hhc---C---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHH
Q 008362 322 -IYTSMGVCPQEDLLWETLTGREHLLFYG-RLK---N---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRR 392 (568)
Q Consensus 322 -~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~---~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqr 392 (568)
.++.++|++|++.+++.+|+.+++.... .+. . ....+..+.++++++.+++.+ +..++++. +||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-hhcccCCCCCCCHHHHHH
Confidence 3457999999999888888777765421 111 1 111233556788899999953 35677775 899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l 470 (568)
++||||++.+|++++|||||+|||+.+++.+.+.|++++ +|+|||++||++++++.+ ||++++|++|+++..|+++.+
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999998864 589999999999999988 899999999999999998865
Q ss_pred H
Q 008362 471 K 471 (568)
Q Consensus 471 ~ 471 (568)
.
T Consensus 234 ~ 234 (248)
T PRK09580 234 K 234 (248)
T ss_pred H
Confidence 4
No 236
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=5.2e-45 Score=361.23 Aligned_cols=210 Identities=20% Similarity=0.384 Sum_probs=179.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
..+++++|+++.|+++. ++.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....
T Consensus 9 ~~~l~~~~l~~~~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 85 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP---DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKY 85 (226)
T ss_pred CceEEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHH
Confidence 35799999999997421 2469999999999999999999999999999999999999999999999998753 3344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
.++.++|+||++.+++ .|++||+.+..... ...+. ...++++++.+ |+. +..++++.+||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgG~~qrv~ 160 (226)
T cd03248 86 LHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYD--TEVGEKGSQLSGGQKQRVA 160 (226)
T ss_pred HHhhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhcccccc--chhhcCCCcCCHHHHHHHH
Confidence 5678999999998887 59999998643211 11111 11246778888 775 3678899999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
|||||+.+|+++||||||+|||+.+++.+++.+++..+++|||++||++++++. |||+++|++|++
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999999987667999999999999975 999999999974
No 237
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-45 Score=400.53 Aligned_cols=224 Identities=21% Similarity=0.392 Sum_probs=192.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCc--H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTD--M 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~--~ 319 (568)
..+++++||+|.|+... ++.+++|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++... .
T Consensus 257 ~~~l~~~~l~~~~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 257 EVILEVRNLTAWDPVNP---HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred CceEEEecCcccccccc---ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 34799999999995211 2469999999999999999999999999999999999998 5999999999988532 2
Q ss_pred HHhhcceEEEcCCC---CCCCCCCHHHHHHHHh--hhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 320 DRIYTSMGVCPQED---LLWETLTGREHLLFYG--RLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~--~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
+..++.+||+||++ .+++.+|+.||+.+.. ...+ .+.++.+++++++++.+++.. +..++++++|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC-CCcccccccCCHHHHH
Confidence 34567899999985 5788899999998743 1221 123334567899999999952 3679999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..|+++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999999986 4699999999999999999999999999999999987664
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.9e-44 Score=399.92 Aligned_cols=227 Identities=19% Similarity=0.337 Sum_probs=194.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCCc
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRTD 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~~ 318 (568)
++++++|+++.|++.. ..+.+++|+||++++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 4 PLLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred ceEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 3799999999996311 125799999999999999999999999999999999999986 799999999998542
Q ss_pred -H---HHhh-cceEEEcCCCC--CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCC-CcccccCCCCChhH
Q 008362 319 -M---DRIY-TSMGVCPQEDL--LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHG-GVADKQAGKYSGGM 389 (568)
Q Consensus 319 -~---~~~r-~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~~~LSgG~ 389 (568)
. ...| +.+||+||++. +++.+|++|++.+.... .+.+..+..++++++++.+||.+. +..++++++|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1 1233 57999999974 67778999998865433 244555566789999999999631 13589999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||++|||||+.+|+++||||||+||||.+++.++++|+++ ++ |+|||++||+++++..+||||++|++|+++..|++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 241 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA 241 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999986 34 89999999999999999999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 242 ~~~~~ 246 (529)
T PRK15134 242 ATLFS 246 (529)
T ss_pred HHHhh
Confidence 88743
No 239
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.8e-43 Score=420.96 Aligned_cols=227 Identities=22% Similarity=0.372 Sum_probs=193.2
Q ss_pred eEEEEeEEEEcCCCCC-------CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeC
Q 008362 245 AIISDNLRKIYPGRDG-------NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDI 315 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~-------~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i 315 (568)
.+..+||+...+.... ..++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5889999988753211 1235799999999999999999999999999999999999763 789999999886
Q ss_pred CCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccC-----CCCCh
Q 008362 316 RTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQA-----GKYSG 387 (568)
Q Consensus 316 ~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~~LSg 387 (568)
.. ...++.+|||+|++.+++.+||+||+.+.+.++. .+.++..+.++++++.++|.+ .+|+.+ +.|||
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~--~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN--LKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh--HhCCccCCCCCCCcCH
Confidence 42 3456789999999999999999999999876542 233445567899999999973 678876 58999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEee
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCI 464 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~ 464 (568)
||||||+||+||+.+|++++|||||+|||+.++..+++.|+++ ++|+|||+|||+++ ++..+|||+++|++ |++++.
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999986 46999999999998 57789999999996 899999
Q ss_pred cCH----HHHHHhcC
Q 008362 465 GNP----KELKARYG 475 (568)
Q Consensus 465 g~~----~~l~~~~~ 475 (568)
|++ +++.+.|.
T Consensus 1103 G~~~~~~~~~~~yF~ 1117 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFE 1117 (1470)
T ss_pred CCcccccccHHHHHH
Confidence 996 35555443
No 240
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.3e-44 Score=361.20 Aligned_cols=202 Identities=25% Similarity=0.437 Sum_probs=178.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 3 ~~l~~~~l~~~~~~------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQ------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------K 66 (251)
T ss_pred cEEEEeceEEEECC------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------c
Confidence 37999999999973 4699999999999999999999999999999999999999999999987 2
Q ss_pred cceEEEcCCCCCCCCC--CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETL--TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~l--Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++.+++.+ |+.+++.+.. +. ..+++.++++.+++. +..++++.+||||||||++||+||+.
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~l~~~gl~--~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GT----KKEDILPALKRVQAG--HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---cc----cHHHHHHHHHHcCCh--HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999998887764 7888775421 11 134578899999996 47899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++||+++++..+|||+++|+ |++++.|+++++.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 99999999999999999999999999986 34 8999999999999999999999996 5799999998874
No 241
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.9e-44 Score=347.11 Aligned_cols=188 Identities=31% Similarity=0.543 Sum_probs=166.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++|++|+|++..+...+.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 488999999997411011256999999999999999999999999999999999999 9999999999998864 256
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++||||++.+++.+|++||+.+..+.. +||||||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------cCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999997642110 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeec
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g 465 (568)
|++++|||||+|||+.+++.++++|++.+ +|+|||++||+++ ++..+|||+++|++|++++.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999864 5999999999996 788899999999999998754
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.5e-44 Score=343.64 Aligned_cols=178 Identities=27% Similarity=0.509 Sum_probs=161.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.......++.
T Consensus 1 i~~~~~~~~~~~~----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQ----EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCC----CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 4689999999742 136999999999999999999999999999999999999999999999999874333456778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++ .|++||+ +.+||||||||++||||++.+|++
T Consensus 77 i~~~~q~~~~~~-~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEEEccCCeeec-ccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998886 6999987 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+++.|++..+++|||++||++++++ .|||+++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999998767899999999999997 59999999999998754
No 243
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=7.8e-45 Score=408.08 Aligned_cols=218 Identities=24% Similarity=0.455 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+|+.. +...+
T Consensus 470 g~I~~~nvsf~y~~~----~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVSFRYGPD----DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEEEEeCCC----CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 469999999999863 2469999999999999999999999999999999999999999999999999965 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||++|++.||.. |++||+.+...- ...+++.++++..|..+ +........+||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~------~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNPE------ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 9999999999999997 999999985321 11234444444444321 1234556678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+++|+|+|||||||+||+.+.+.+.+.|.+..+|+|+|++||+...+. .||||++|++|+++.+|+.+++.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999886 5999999999999999999999987
No 244
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=397.23 Aligned_cols=215 Identities=20% Similarity=0.417 Sum_probs=187.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
.+++++|++|.|+ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++... ...
T Consensus 264 ~~l~~~~l~~~~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRDR--------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccCC--------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 4799999999763 289999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCC---CCCCCCCCHHHHHHHHhhhc--------CC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 322 IYTSMGVCPQE---DLLWETLTGREHLLFYGRLK--------NL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 322 ~r~~ig~~~Q~---~~l~~~lTv~e~l~~~~~l~--------~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.++.+||+||+ ..+++.+|++||+.+....+ +. ..++.+++++++++.+++.. +..++++++|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC-HSVNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC-CCccCccccCChHH
Confidence 56789999998 46889999999998743211 11 12233456789999999952 36899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||+|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..++.
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 99999999999999999999999999999999999999986 5699999999999999999999999999999987754
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-44 Score=340.87 Aligned_cols=172 Identities=44% Similarity=0.818 Sum_probs=159.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYGK------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEECC------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 468999999963 46999999999999999999999999999999999999999999999999886433456788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|+.||+. ||||||||++|||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEEEecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999974 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++|||||+|||+.+++.++++|++. ++|.|+|++||+++++..+|||+++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999986 4589999999999999999999999999974
No 246
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.1e-44 Score=351.30 Aligned_cols=198 Identities=27% Similarity=0.384 Sum_probs=176.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++
T Consensus 2 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGG------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAE 73 (207)
T ss_pred EEEEEeEEEEECC------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHh
Confidence 5899999999973 469999999999999999999999999999999999999999999999998743 2 2677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||++|++.+++.+|++||+.+.....+.. .+++.++++.+||. +..++++++||||||||++||||++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLA--PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCH--HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999998888999999998865544321 24578899999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++||||||+|||+.+++.+++.|++. ++|+|||++||++++++. |+++-+..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 99999999999999999999999985 569999999999999986 88877643
No 247
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.9e-44 Score=361.31 Aligned_cols=219 Identities=20% Similarity=0.305 Sum_probs=184.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|+++.|++. ++.+++|+||++++||++||+|+||||||||+++|+|+++|++|+|+++|+++.. .....
T Consensus 18 ~~i~~~~l~~~~~~~----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCVRYENN----LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEEEeCCC----CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 469999999999742 2469999999999999999999999999999999999999999999999998854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
++.+||+||++.+++. |++||+..... .......+ .+.+.++.+ ++. ...++++.+||||||||++|
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~--~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLD--AVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccC--cEeccCCCcCCHHHHHHHHH
Confidence 7889999999988875 99999864211 01111111 133444444 454 35677889999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||+.+|+++||||||+|||+.+++.+++++++..+++|||++||+++++.. |||+++|++|+++..|+++++.+.
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999999999999987779999999999999986 999999999999999999988653
No 248
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-44 Score=396.79 Aligned_cols=221 Identities=21% Similarity=0.365 Sum_probs=190.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCC--cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~--~~~ 320 (568)
.+++++|+++.|++. +++.+++|+||+|++||++||+||||||||||+|+|+|+.+| ++|+|.++|+++.. ...
T Consensus 256 ~~l~~~~l~~~~~~~---~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~ 332 (500)
T TIGR02633 256 VILEARNLTCWDVIN---PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 (500)
T ss_pred ceEEEeCCccccccc---ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHH
Confidence 479999999999421 024699999999999999999999999999999999999985 89999999998853 224
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..++++||+||+. .+++.+|++||+.+... .. +....+.+++++++++.+++.+ ...++++++||||||||
T Consensus 333 ~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-ASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-CCccCccccCCHHHHHH
Confidence 5678899999995 58899999999987431 21 1222334567889999999952 35799999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
++|||||+.+|+++||||||+|||+.+++.++++++++ ++|+|||++|||++++..+|||+++|++|++++.++..
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999886 46999999999999999999999999999999877553
No 249
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.8e-44 Score=348.15 Aligned_cols=196 Identities=28% Similarity=0.396 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++|.|++ +.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.......++.
T Consensus 1 l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRGE------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEECC------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 468999999973 57999999999999999999999999999999999999999999999999886544455678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+||++.+++.+|+.||+.++....+ .+ ++++.++++.+++. +..++++++||||||||++||||++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLT--GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCH--HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999988765443 11 34678899999996 478999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
++|||||+|||+.+++.+++.|++. ++|+|||++||+..++ .|+|+..
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 9999999999999999999999985 5689999999998654 4788754
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-44 Score=342.25 Aligned_cols=173 Identities=32% Similarity=0.573 Sum_probs=159.5
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHHh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDRI 322 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~~ 322 (568)
++++|+++.|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~~~------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQ------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECC------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 468999999973 5699999999999999999999999999999999999999999999999988542 3456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++|+||++.+++.+|++||+.+. ||||||||++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999998753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
|++++|||||+|||+.++..++++|++. ++ |+|+|++||++++++.+||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999986 44 7999999999999999999999999985
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.9e-44 Score=393.96 Aligned_cols=211 Identities=20% Similarity=0.262 Sum_probs=186.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+|+++|++|+|++ +.+++|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.. .....+
T Consensus 3 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 6999999999973 459999999999999999999999999999999999999999999999987743 334456
Q ss_pred cceEEEcCCCCC--C-C-----CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 324 TSMGVCPQEDLL--W-E-----TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 324 ~~ig~~~Q~~~l--~-~-----~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
+.+||+||++.+ + + .+|++|++.+. .+.+++++++++.++|. +..++++++||||||||++|
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGIT--ALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCH--hhhhCCcccCCHHHHHHHHH
Confidence 679999998643 1 1 47888887542 12346788999999996 47899999999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++||+++++..+|||+++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999986 45899999999999999999999999999999999988764
No 252
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.2e-44 Score=341.76 Aligned_cols=174 Identities=24% Similarity=0.475 Sum_probs=159.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++|++|+| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...
T Consensus 3 ~~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH
Confidence 369999999987 79999999999999999999999999999999999999999999999998643 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.++.++|+||++ .+++.+|++||+.+... ||||||||++||||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHH
Confidence 577899999984 58888999999987421 99999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++.+|+++||||||+|||+.+++.+++.+++. ++|+|||++||+++++..+||++++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999986 4589999999999999999999999999974
No 253
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5e-44 Score=374.05 Aligned_cols=215 Identities=27% Similarity=0.447 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~~ 321 (568)
+.++++|++|+|++ ..|.+||||+|++|||.||+|.||||||||+|||.|+++|++|+|+++|+.+. .+.+.
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46999999999983 78999999999999999999999999999999999999999999999999874 45677
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
++..||++.||+.|+|.+||.||+.+...- ...+.++.+++++++.++.||+- ..++++.+||-|+||||.|-+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v--dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV--DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC--CccceeecCCcchhHHHHHHHH
Confidence 888999999999999999999999987642 12456678889999999999974 5799999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|..+|++|||||||+-|-|...+++++.++++ ++|+|||++||-++|+.++|||+.||.+|+++..-+
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999997 579999999999999999999999999999765443
No 254
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=325.42 Aligned_cols=218 Identities=26% Similarity=0.426 Sum_probs=201.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC--CC-----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI--RT----- 317 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i--~~----- 317 (568)
.|+++|+++.||. .++|.||+|+.++||.+.|+||+|||||||+|.|.=+..|.+|+..|.|... ++
T Consensus 2 sirv~~in~~yg~------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4899999999984 6799999999999999999999999999999999999999999999988643 22
Q ss_pred cHHHhhcceEEEcCCCCCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 318 DMDRIYTSMGVCPQEDLLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 318 ~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
...++|+++|+++|...|||.|||.|||.- ..+..|+++++.+.++.++|+++.|. +++|+.+-.|||||+||++||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~--~~adr~plhlsggqqqrvaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK--PYADRYPLHLSGGQQQRVAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc--cccccCceecccchhhhHHHH
Confidence 234678999999999999999999999865 56778999999999999999999997 599999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++++||||++|||+-..++.++|+++. .|.|-+++||..+.+...+.|++-|++|++++.|+....
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 99999999999999999999999999999999975 599999999999999999999999999999999997654
No 255
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-45 Score=341.51 Aligned_cols=220 Identities=25% Similarity=0.447 Sum_probs=203.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
||+++|++|+|+ ++.+++++|++|++|.+++++||||||||||+.+++.+.++++|+|+++|.++.. +.+.+.
T Consensus 1 MI~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 588999999998 4789999999999999999999999999999999999999999999999999964 566778
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHh--hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYG--RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~--~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
+.+++.-|++.+-..+||+|-+.|+. .-+|...++.++.++++++.++|+ +..+++..+||||||||.-+|+.+++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~--~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE--DLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc--chHHHhHHhcccchhhhhhhheeeec
Confidence 88999999999999999999988742 235666778888999999999997 58999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+.++||||.++||......+++.++++ .+ |+||+++-||++.|..++|+|+-|++|+++..|+++++.+
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999996 44 9999999999999999999999999999999999999753
No 256
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=380.20 Aligned_cols=215 Identities=25% Similarity=0.372 Sum_probs=188.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++||++.|+++ ..+.+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 19 ~~mL~lknL~~~~~~~---~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDG---EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------- 88 (549)
T ss_pred cceeEEEEEEEecCCC---ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-------
Confidence 3479999999999752 135699999999999999999999999999999999999999999999999752
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++++...+.+.+|++||+.+.....+.+.++..+++.++++.+++. +..++++++||||||||++|||||+.+
T Consensus 89 -----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~--~~ld~~~~~LSGGQrQRVaLArAL~~~ 161 (549)
T PRK13545 89 -----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG--KFIYQPVKTYSSGMKSRLGFAISVHIN 161 (549)
T ss_pred -----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh--hHhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 1223445677799999998866555555555566788899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|+++||||||+|||+.+++.+++.|+++ ++|+|||++||+++++..+|||+++|++|++++.|+++++...+
T Consensus 162 P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 9999999999999999999999999986 46899999999999999999999999999999999999887654
No 257
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=7.4e-44 Score=400.20 Aligned_cols=215 Identities=23% Similarity=0.416 Sum_probs=185.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||++.|.+ ++++|+|+||++++||.+||+||||||||||+++|+|++ |++|+|.++|+|+.. +.+.+|
T Consensus 349 ~i~~~~vsf~~~~-----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPD-----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEeccC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5999999976642 356999999999999999999999999999999999999 999999999999965 567789
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||||||++.+|+. |++||+.++. ...+ +++++++++..++.+ +........+||||||||++
T Consensus 423 ~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 423 KHLSWVGQNPQLPHG-TLRDNVLLGN--PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred hheEEecCCCcCCCc-CHHHHhhcCC--CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 999999999999997 9999999852 1122 244555555555421 12334456689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|+++|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEeecCCHHHHHhc
Confidence 999999999999999999999999999999999988889999999999988865 999999999999999999999765
No 258
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-44 Score=335.35 Aligned_cols=222 Identities=26% Similarity=0.379 Sum_probs=203.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC-eeCCCc--HH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG-LDIRTD--MD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G-~~i~~~--~~ 320 (568)
..+.++||+.+|++ ..||+|+||++.+||.-+|+|||||||||++..|+|..+|+.|+++++| .|+... .+
T Consensus 4 ~iL~~~~vsVsF~G------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGG------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcc------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 46899999999985 6799999999999999999999999999999999999999999999999 888653 34
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..|..||--||.|..|+.+||+|||.+..+. ......+.+++++++|+..||. +.+++.++.||-||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~--~~~~~~A~~LSHGqKQw 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG--DERDRLAALLSHGQKQW 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc--hhhhhhhhhhccchhhh
Confidence 4677899999999999999999999986433 2223345567899999999997 48999999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|.|++-++++|++|+||||++||-.....+.-++++.++++++|+++.|||+.+.++|+||.+|+.|.+.|.|+.+++.+
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~ 235 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 236 d 236 (249)
T COG4674 236 D 236 (249)
T ss_pred C
Confidence 4
No 259
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.6e-44 Score=402.22 Aligned_cols=218 Identities=24% Similarity=0.416 Sum_probs=191.7
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC--ceEEEECCeeCCCcHHHhhc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT--SGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~--~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++|++|.|+ ++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++.. ..++
T Consensus 70 ~~~~l~~~~~------~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~ 140 (659)
T PLN03211 70 KISDETRQIQ------ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILK 140 (659)
T ss_pred ccccccccCC------CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhcc
Confidence 3566777775 357999999999999999999999999999999999999885 9999999998742 3456
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcc-----cccCCCCChhHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVA-----DKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~~LSgG~kqrl~la 396 (568)
++||++|++.+++.+||+||+.+.+.++. .+.++.+++++++++.+||.+ .+ ++.+++||||||||++||
T Consensus 141 ~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK--CENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred ceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh--hcCceeCCCCCCCcChhhhhHHHHH
Confidence 79999999999999999999999776542 233445567899999999963 44 456778999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||+.+|++++|||||+|||+.+++.+.+.|+++. +|+|||++||+++ ++.++||++++|++|+++..|+++++...+
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999864 6999999999998 688999999999999999999999998766
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
.
T Consensus 299 ~ 299 (659)
T PLN03211 299 E 299 (659)
T ss_pred H
Confidence 4
No 260
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-43 Score=341.42 Aligned_cols=185 Identities=27% Similarity=0.442 Sum_probs=164.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCCcHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++|+++.|++.. .++.+++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++. ...
T Consensus 3 ~l~~~~l~~~~~~~~--~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVKG--GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNF 77 (192)
T ss_pred EEEEeeeEEEecCCC--CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHh
Confidence 589999999997421 1256999999999999999999999999999999999986 489999999999875 455
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.++|++|++.+++.+|++||+.+....+ +||||||||+++|||++.+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------~LSgGe~qrv~la~al~~~ 126 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------GLSVEQRKRLTIGVELAAK 126 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------cCCHHHhHHHHHHHHHhcC
Confidence 678999999999999999999998642100 8999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEeec
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIG 465 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~g 465 (568)
|++++|||||+|||+.+++.+++.+++.+ +|+|||++||+++ ++...|||+++|++ |+++..|
T Consensus 127 p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 127 PSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999864 5899999999998 57889999999999 9998765
No 261
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-44 Score=387.93 Aligned_cols=223 Identities=25% Similarity=0.456 Sum_probs=192.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||++.|+.++ +.++++|+||+|++||++||+||||+||||+.++|-.++.|++|+|.+||+|+++ +...+
T Consensus 464 G~IeF~~VsFaYP~Rp---~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP---DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEeeeecCCCC---CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 4699999999999753 6789999999999999999999999999999999999999999999999999976 66778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHH-----HHHHHHcCCCC--CCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAV-----EESLKSVNLFH--GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~-----~~~l~~~~L~~--~~~~~~~~~~LSgG~kqrl~l 395 (568)
|++||+|-|+|.||.. |++||+.+... ..+.+++...+ ++.+.. +++ +..-..+..+||||||||++|
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHh--CccccccccCCccccccchHHHHHHH
Confidence 9999999999999997 99999998654 33333332222 222222 222 123455666899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||||+.||+||||||.||+||.++...+.+.|.+..+|+|||++.|.+..++. ||+|+++++|++++.|+.+||.++.+
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E~G~h~eLl~~~~ 694 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVEMGTHDELLSKPN 694 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEecccHHHHhhCcc
Confidence 99999999999999999999999999999999998888999999999999986 99999999999999999999988653
No 262
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-43 Score=344.34 Aligned_cols=196 Identities=22% Similarity=0.295 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +++++|+||++++||++||+||||||||||+++|+|+.+|++|+|+++|+++.......++
T Consensus 1 ml~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~ 74 (200)
T PRK13540 1 MLDVIELDFDYHD------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQK 74 (200)
T ss_pred CEEEEEEEEEeCC------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHh
Confidence 4789999999973 5699999999999999999999999999999999999999999999999988654456678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+|++||+.+..... . ....+.++++.+++. +..++++.+||||||||++||||++.+|+
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~--~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYDIHFS---P--GAVGITELCRLFSLE--HLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHHHhcC---c--chHHHHHHHHHcCCc--hhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 8999999999989999999998754321 1 134678899999996 36789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~ 454 (568)
++||||||+|||+.+++.+++.|++. ++|+|||++||+.+.+.. ||.-.
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence 99999999999999999999999986 468999999999988865 87643
No 263
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-44 Score=380.21 Aligned_cols=216 Identities=26% Similarity=0.460 Sum_probs=189.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++.+|+++.|++ .+++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+.++ +...+|+
T Consensus 321 i~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 321 ISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred eeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 445599999985 2489999999999999999999999999999999999999999999999999876 5678999
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------CcccccCCCCChhHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG--------GVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~--------~~~~~~~~~LSgG~kqrl~la 396 (568)
++++++|++.+|+. |++||+.++.. +..++++.++++..++.+- .........|||||+|||++|
T Consensus 396 ~i~~v~Q~p~lf~g-TireNi~l~~~------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 396 QISWVSQNPYLFAG-TIRENILLARP------DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALA 468 (559)
T ss_pred HeeeeCCCCccccc-cHHHHhhccCC------cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHH
Confidence 99999999999998 99999998632 2234567777887777520 112233445999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+.+++++++||||++||.++.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++-
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~ 545 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQ 545 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcC
Confidence 9999999999999999999999999999999999889999999999999876 9999999999999999999997653
No 264
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.9e-43 Score=336.07 Aligned_cols=171 Identities=32% Similarity=0.591 Sum_probs=156.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++++|++. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 i~~~~l~~~~~~~----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGA----EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 4689999999742 2469999999999999999999999999999999999999999999999998854 3445678
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|++|++.+++. |++||+ ||||||||++|||||+.+|+
T Consensus 77 ~i~~~~q~~~~~~~-tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 77 HVGYLPQDDELFSG-SIAENI---------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred heEEECCCCccccC-cHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 89999999988885 999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++||||||+|||+.+++.+++.+++.+ +|+|||++||++++++ .|||+++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 999999999999999999999999864 5899999999999985 7999999999974
No 265
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.8e-43 Score=342.70 Aligned_cols=186 Identities=25% Similarity=0.408 Sum_probs=164.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-H-HH
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M-DR 321 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~-~~ 321 (568)
++++|++|.|++ +.+++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++... . ..
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGG------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeCC------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 468999999973 4699999999999999999999999999999999999 589999999999998652 2 22
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.++|+||++.+++.+|+++++ ++...+||||||||+++|||++.
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l---------------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL---------------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH---------------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 345699999999999988988876 01225799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHH-hCCEEEEEECCEEEeecCHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~-l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|++++|||||+|||+.+++.++++|++.+ +++|||++||++++++. +|||+++|++|++.+.|+.+ +.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~-~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE-LA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH-HH
Confidence 999999999999999999999999999864 58999999999999998 79999999999999999554 44
No 266
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.2e-43 Score=402.93 Aligned_cols=214 Identities=25% Similarity=0.413 Sum_probs=187.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||+|+.. +.+.+|
T Consensus 451 ~I~~~nvsf~Y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPD----GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred eEEEEEEEEEcCCC----CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 59999999999642 3579999999999999999999999999999999999999999999999999975 677889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+++|||||++.+|++ |++||+.++.. .+ ++++.++++..++.+ +........+||||||||++
T Consensus 527 ~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRia 598 (686)
T TIGR03797 527 RQLGVVLQNGRLMSG-SIFENIAGGAP---LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLL 598 (686)
T ss_pred hccEEEccCCccCcc-cHHHHHhcCCC---CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 999999999999987 99999997522 12 345677777777642 01223345679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|+++|||||||+||+.+++++.+.|++. ++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 599 lARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 599 IARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999876 5899999999998865 999999999999999999999765
No 267
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-43 Score=394.86 Aligned_cols=217 Identities=26% Similarity=0.458 Sum_probs=192.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+.+
T Consensus 337 ~~i~~~~v~f~y~~~----~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ----PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred CeEEEEEEEEECCCC----CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 2469999999999999999999999999999999999999999999999999875 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc----------ccCCCCChhHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD----------KQAGKYSGGMKRR 392 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~----------~~~~~LSgG~kqr 392 (568)
|+++||+||++.+|+. |++||+.++.. +..++++.++++.+++.+ ..+ ....+||||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~------~~~~~~i~~al~~~~l~~--~i~~p~GldT~vge~g~~LSgGqrqR 483 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP------NASDEALIEVLQQVGLEK--LLEDDKGLNAWLGEGGRQLSGGEQRR 483 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC------ccCHHHHHHHHHHcCCHH--HHcCccccCchhcCCCCCCCHHHHHH
Confidence 8999999999999986 99999987531 123456788888888852 333 2566799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++||||++.+|++++|||||++||+.+++.+.+.+.+..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.+
T Consensus 484 ialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988789999999999999875 99999999999999999999976
Q ss_pred hc
Q 008362 473 RY 474 (568)
Q Consensus 473 ~~ 474 (568)
+.
T Consensus 563 ~~ 564 (574)
T PRK11160 563 QQ 564 (574)
T ss_pred cC
Confidence 54
No 268
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=9.8e-44 Score=340.24 Aligned_cols=177 Identities=30% Similarity=0.579 Sum_probs=160.9
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcc
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTS 325 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ 325 (568)
+++|++|+|++ +.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.
T Consensus 1 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEECC------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 46899999973 469999999999999999999999999999999999999999999999999854 34455677
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+|| +++.+++. +..++++.+||||||||++||||++.+|++
T Consensus 75 i~~~~q----------------------------------~l~~~gl~--~~~~~~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 75 IAYVPQ----------------------------------ALELLGLA--HLADRPFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HhHHHH----------------------------------HHHHcCCH--hHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999 67788886 367889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+||||||+|||+.+++.+.++|++.+ + |+|||++||+++++..+|||+++|++|++...|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999864 4 899999999999999999999999999987643
No 269
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.3e-43 Score=342.16 Aligned_cols=180 Identities=28% Similarity=0.497 Sum_probs=158.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHHhhcceEEEcCCC--CCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQED--LLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~--~l~~~ 338 (568)
+.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.+||+||++ .+++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 83 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA- 83 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-
Confidence 569999999999999999999999999999999999999999999999998842 2234567899999997 3554
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
.|++||+.+.....+.+.++..++++++++.++|. +..++++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS--GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch--hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 69999999865444444455566789999999996 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCceEEEEcCCHHHH
Q 008362 419 SRNNLWNVVKRA-KQGRAIILTTHSMEEA 446 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~g~tiil~tH~~~e~ 446 (568)
+++.++++|++. ++|+|||++||+++++
T Consensus 162 ~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 162 GREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999986 4689999999998764
No 270
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=334.82 Aligned_cols=170 Identities=29% Similarity=0.619 Sum_probs=155.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
++++|++|+|+++ +..+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++
T Consensus 1 l~~~~l~~~~~~~----~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGR----PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCC----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 4689999999742 1369999999999999999999999999999999999999999999999998753 3345577
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+||+||++.+++ .|++||+ ||||||||++||||++.+|+
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI---------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 8999999998887 5999987 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||||+|||+.+++.+++++++.++++|||++||++++++. ||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999987668999999999999988 99999999985
No 271
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.2e-43 Score=404.38 Aligned_cols=217 Identities=23% Similarity=0.393 Sum_probs=187.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.|+.. +.+.+
T Consensus 476 ~~I~~~~vsf~y~~~----~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 476 GYVELRNITFGYSPL----EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred CeEEEEEEEEecCCC----CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.++.. . ..++++.++++..++.+ +........+||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~----~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--T----IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--C----CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 1 12345566666666531 1123345567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++++.+.+++ .++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999976 58999999999998875 999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 702 ~ 702 (710)
T TIGR03796 702 G 702 (710)
T ss_pred C
Confidence 3
No 272
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3e-43 Score=387.85 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
+.++++|+++ .+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .+.
T Consensus 256 ~~l~~~~l~~-----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4789999974 269999999999999999999999999999999999999999999999988542 234
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc---C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGR--LK---N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++++||+||++ .+++.+|+.||+.+... .. + .+.++.+++++++++.+++.. +..++++++||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT-PSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC-CCccCchhhCCHHHHHH
Confidence 567899999996 58889999999987421 11 1 222344567889999999952 36899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
++|||||+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999999887654
No 273
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.1e-43 Score=394.72 Aligned_cols=219 Identities=21% Similarity=0.394 Sum_probs=188.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ++++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 341 ~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGK----EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEEEecCCC----CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 59999999999742 3579999999999999999999999999999999999999999999999999865 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+||+||++.+|+. |++||+.++. +.+..+++++++++.+++.+ +........+||||||||++
T Consensus 417 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 417 NQVALVSQNVHLFND-TIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred hhceEEccCceeecc-hHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999986 9999998742 11112345666666666431 01223344679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||||+.+|++++||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998878999999999998776 59999999999999999999997753
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.9e-43 Score=401.29 Aligned_cols=220 Identities=24% Similarity=0.440 Sum_probs=190.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +.+.+
T Consensus 462 ~~I~~~~vsf~Y~~~----~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ----ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred ceEEEEEEEEEeCCC----CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.+... .. .++++.++++..++.+ +........+||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CC----CHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 9999999999999997 99999987421 11 2345566666665531 1223445568999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.+++..+++|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999998878999999999999875 6999999999999999999999765
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
-.
T Consensus 690 ~~ 691 (694)
T TIGR03375 690 LR 691 (694)
T ss_pred hh
Confidence 43
No 275
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=332.00 Aligned_cols=219 Identities=25% Similarity=0.423 Sum_probs=193.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+|+++||+.+-.+ +..++++||++++||+.+|+||||||||||+|.|+|.+.|++|++.++|.++.. ...+..
T Consensus 1 mi~a~nls~~~~G------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEeec------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 5889999999874 679999999999999999999999999999999999999999999999999865 445556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++-+++||+..+-...||+|-+.++..-.+...+ +..+.++++|...++. .++.+...+|||||||||.+||.|++
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~--~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS--GLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh--hhhccchhhcCchHHHHHHHHHHHHH
Confidence 7789999998875556999999986554432222 4555688999999997 48999999999999999999999964
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 ------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 ------~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++++++||||||.||...+..+.++.++. ++|..|+.+-||++.+..+||||++|++||+++.|+|++..
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 45689999999999999999999999996 67999999999999999999999999999999999998864
No 276
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-43 Score=404.29 Aligned_cols=221 Identities=29% Similarity=0.529 Sum_probs=192.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+.++ +..+|+|+||+|++||+++|+|||||||||++++|.+++.|++|+|+++|.|++. +.+.+
T Consensus 349 g~ief~nV~FsYPsRp---dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRP---DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred cceEEEEEEecCCCCC---cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 4699999999999753 5789999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-------~--~~~~~~~~~~LSgG~kqrl 393 (568)
|++||.|.|+|.||.. |++||+.+.. + +..+++++++.+..+.. + +.....+..+||||||||+
T Consensus 426 r~~iglV~QePvlF~~-tI~eNI~~G~-----~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRI 498 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFAT-TIRENIRYGK-----P-DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRI 498 (1228)
T ss_pred HhhcCeeeechhhhcc-cHHHHHhcCC-----C-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHH
Confidence 9999999999999885 9999999742 1 12233444444433321 0 1233444556999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++++.+.+.|.+..+|+|-|+++|++..+.. +|+|++|++|++++.|+++||.+.
T Consensus 499 AIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 499 AIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988 999999999999999999999877
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
-|
T Consensus 578 ~G 579 (1228)
T KOG0055|consen 578 GG 579 (1228)
T ss_pred cc
Confidence 53
No 277
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-43 Score=393.33 Aligned_cols=216 Identities=19% Similarity=0.331 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++ ++++++|+||++++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+.. +.+.+
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 35999999999973 2469999999999999999999999999999999999999999999999999965 56788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||+||++.+|++ |++||+.++. ..+ ++++.++++.+|+.+ +........+||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 9999999999999998 9999999853 122 345667777776541 0122344567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|++++||||||+||+.+.+.+.+.|++..+++|+|++||+++... .||+|++|++|++++.|+++++.++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999998876 4999999999999999999999765
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=386.22 Aligned_cols=216 Identities=21% Similarity=0.390 Sum_probs=186.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~ 321 (568)
..++++|++. +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++.. ....
T Consensus 256 ~~l~~~~~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~ 325 (501)
T PRK11288 256 VRLRLDGLKG----------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325 (501)
T ss_pred cEEEEecccc----------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHH
Confidence 3588899872 138999999999999999999999999999999999999999999999998853 2334
Q ss_pred hhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc----C--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQED---LLWETLTGREHLLFYGRLK----N--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~----~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++.+||+||++ .+++.+|+.||+.+..... + .+..+.+++++++++.+++.+ +..++++.+||||||||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT-PSREQLIMNLSGGNQQK 404 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc-CCccCccccCCHHHHHH
Confidence 567899999986 4889999999998643211 1 112233457889999999942 36899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+||+||+.+|+++||||||+|||+.++++++++|+++ ++|.|||++|||+++++.+|||+++|++|++++.|++++.
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999986 4699999999999999999999999999999999887653
No 279
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.9e-43 Score=365.31 Aligned_cols=189 Identities=29% Similarity=0.506 Sum_probs=171.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH
Q 008362 282 MLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ 361 (568)
Q Consensus 282 LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~ 361 (568)
|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++++||+||++.+++.+|++||+.+..+.++.+.++.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 68999999999999999999999999999999985432 23578999999999999999999999876665555555567
Q ss_pred HHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEE
Q 008362 362 AVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILT 439 (568)
Q Consensus 362 ~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~ 439 (568)
+++++++.++|. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.|+++ ++ |+|||++
T Consensus 80 ~~~~~l~~~~l~--~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 80 RVLEALRLVQLE--EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHcCCc--chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 889999999996 4789999999999999999999999999999999999999999999999999986 33 8999999
Q ss_pred cCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 440 THSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 440 tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+++++..+|||+++|++|+++..|+++++.++
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998654
No 280
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.9e-43 Score=400.07 Aligned_cols=219 Identities=24% Similarity=0.460 Sum_probs=186.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+++. ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.. +.+.+
T Consensus 477 ~~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRP---DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEEEECCCCC---CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997431 3579999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|+|+||++.+|+. |++||+.++.. ..+ ++++.++++..++.+ +........+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 8999999999999986 99999987521 111 345666777766531 0123344567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+.+.+.+ ....+++|+|++||+++.++. ||+|++|++|++++.|+++++.++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999999998 333468999999999998865 999999999999999999999876
Q ss_pred cC
Q 008362 474 YG 475 (568)
Q Consensus 474 ~~ 475 (568)
.+
T Consensus 704 ~~ 705 (711)
T TIGR00958 704 QG 705 (711)
T ss_pred CC
Confidence 44
No 281
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-44 Score=374.31 Aligned_cols=218 Identities=26% Similarity=0.452 Sum_probs=194.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++||+++|++. +.++|+|+||++++||-++|+|++||||||++++|+|.++|++|+|.++|.++.. +.+++|
T Consensus 336 ~l~~~~vsF~y~~~----~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQ----QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccceeecCCC----ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 69999999999863 3579999999999999999999999999999999999999999999999999975 445688
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+++++|...+|.+ |+++||.+.. ++..++++.++++.+||++ ....+.....||||||||++
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 999999999999998 9999999852 2234567788888888853 01344556789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+|++|.+++||||||.||||...+++.+.+.+..+|||+|++||++..++. ||||++|++|++++.|+++++..+.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999999988889999999999999986 9999999999999999999997743
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.2e-42 Score=343.92 Aligned_cols=194 Identities=32% Similarity=0.510 Sum_probs=169.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCC--CCCHHHHHHHHh
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWE--TLTGREHLLFYG 349 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~--~lTv~e~l~~~~ 349 (568)
|++++||++||+|+||||||||+++|+|+.+|++|+|.++|+++. ..++++||+||++.++. .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 578899999999999999999999999999999999999998763 34678999999987643 479999998742
Q ss_pred hh----cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 350 RL----KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 350 ~l----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
.. .+....+.++++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLT--ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCc--hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 21 1112223446788999999996 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 426 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.|++++ +|+|||++||+++++..+|||++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 999864 6999999999999999999999999 899999999888744
No 283
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.1e-42 Score=383.90 Aligned_cols=216 Identities=20% Similarity=0.374 Sum_probs=185.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-D 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~ 320 (568)
..+++++|+++ .+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... . .
T Consensus 266 ~~~l~~~~l~~-----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 334 (510)
T PRK15439 266 APVLTVEDLTG-----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ 334 (510)
T ss_pred CceEEEeCCCC-----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHH
Confidence 34799999983 159999999999999999999999999999999999999999999999988542 2 2
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHHHHHhh--hc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHLLFYGR--LK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~--l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
..++.+||+||++ .+++.+|+.||+..... .. .....+.+++++++++.+++.. +..++++++|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF-NHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCC-CCccCccccCCcHHHHHHH
Confidence 3456899999984 58889999999864311 11 1112233456889999999952 3689999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|||||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999986 4589999999999999999999999999999999987654
No 284
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=381.69 Aligned_cols=216 Identities=20% Similarity=0.369 Sum_probs=184.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~ 320 (568)
..+|+++|+++.| +.+++|+||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++... .+
T Consensus 248 ~~~i~~~~l~~~~--------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 248 EVILEVRNLTSLR--------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred CcEEEEeCccccc--------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 3479999999974 2499999999999999999999999999999999999999999999999988542 23
Q ss_pred HhhcceEEEcCCC---CCCCCCCHHHHH-----HHHhhhcCC-CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 321 RIYTSMGVCPQED---LLWETLTGREHL-----LFYGRLKNL-KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 321 ~~r~~ig~~~Q~~---~l~~~lTv~e~l-----~~~~~l~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
..++.+||+||++ .+++++|+.+|. .+.....+. +..+.++.+.++++.+++.+ +..++++.+|||||||
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~q 398 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKT-PGHRTQIGSLSGGNQQ 398 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccC-CCcccccccCCcHHHH
Confidence 4567799999985 478889888773 322222222 23344567888999999952 3579999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|++||||++.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|+++..++.
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 999999999999999999999999999999999999886 4699999999999999999999999999999976654
No 285
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.2e-42 Score=398.24 Aligned_cols=218 Identities=21% Similarity=0.376 Sum_probs=187.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+. ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.|+.. +.+.+
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 35999999999963 2569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.++.. ...+ ++++.++++..++.+ +........+||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999998522 1122 234555555555421 1223455678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.|++. +|+|+|++||+++.+. .||||++|++|++++.|+.+++.++
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999875 5899999999999875 5999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 699 ~ 699 (708)
T TIGR01193 699 N 699 (708)
T ss_pred C
Confidence 3
No 286
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.7e-42 Score=387.54 Aligned_cols=218 Identities=26% Similarity=0.512 Sum_probs=188.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|+++.|++ ++++++|+||++++||.+||+|||||||||+++.|.|+++|++|+|.+||.|++. +.+.+|
T Consensus 328 ~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4999999999974 3679999999999999999999999999999999999999999999999999976 677889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
++||++||++.||.. |++||+.++..- .+.++..+.++ +.++.+ |++ .........||||||||++||
T Consensus 403 ~~I~~V~Qd~~LF~~-TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~d--t~vge~G~~LSgGQrQrlaiA 477 (567)
T COG1132 403 KRIGIVSQDPLLFSG-TIRENIALGRPD--ATDEEIEEALKLANAHEFIANLPDGYD--TIVGERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HhccEEcccceeecc-cHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhCccccc--ceecCCCccCCHHHHHHHHHH
Confidence 999999999999995 999999985321 22233322222 223333 232 234455568999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||++.+|++++||||||+||+.+.+.+.+.+.+..+|||+++++|.++.+.. ||+|++|++|++++.|++++|.++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999999987788999999999999988 999999999999999999999876
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.7e-42 Score=382.94 Aligned_cols=220 Identities=28% Similarity=0.511 Sum_probs=187.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+..
T Consensus 315 ~~i~~~~v~~~y~~~----~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 315 GHLSVENVTIVPPGG----KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999642 3579999999999999999999999999999999999999999999999999865 45678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
|+.+||+||++.+|+. |++||+.++.. ..+.++..+ ..++.++.+ |++ ...++...+||||||||++|
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~--t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYD--TVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccc--cccCCCcCCCCHHHHHHHHH
Confidence 8999999999999987 99999986431 122222221 123444444 443 34567788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||++.+|+++||||||+|||+.+++.+.+.+++.. +|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 466 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999999874 6899999999999875 6999999999999999999988653
No 288
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-43 Score=344.85 Aligned_cols=199 Identities=27% Similarity=0.452 Sum_probs=179.5
Q ss_pred CeEEEEeEEEEcCCCCC--CC-ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH
Q 008362 244 HAIISDNLRKIYPGRDG--NP-EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~--~~-~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~ 320 (568)
..++++||+|.|..+.+ +. ...|++||||+|++||++||+|.||||||||-|+|+|+++||+|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46999999999975321 11 248999999999999999999999999999999999999999999999999864321
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++..+++.++|+.+|+.. +..++++++|||||+||++|||||+
T Consensus 82 -----------------------------------~~~~~~~v~elL~~Vgl~~-~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 82 -----------------------------------KEERRERVLELLEKVGLPE-EFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -----------------------------------hhHHHHHHHHHHHHhCCCH-HHhhcCCcccCchhhhhHHHHHHHh
Confidence 3445678999999999974 7899999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcCCcE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSY 478 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~~~ 478 (568)
.+|+++++|||+|+||...+.++.+++++++ .|.|.+++|||+..+..+||||++|..|++++.|+.+++.....+.|
T Consensus 126 l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpY 205 (268)
T COG4608 126 LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPY 205 (268)
T ss_pred hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHH
Confidence 9999999999999999999999999999864 49999999999999999999999999999999999999998777766
Q ss_pred E
Q 008362 479 V 479 (568)
Q Consensus 479 ~ 479 (568)
+
T Consensus 206 T 206 (268)
T COG4608 206 T 206 (268)
T ss_pred H
Confidence 5
No 289
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.9e-42 Score=386.45 Aligned_cols=219 Identities=21% Similarity=0.357 Sum_probs=185.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++++|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.+..|
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999974 2468999999999999999999999999999999999999999999999999865 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH-----HHHHHc--CCCCCCcccccCCCCChhHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE-----ESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~-----~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+.+||+||++.+++. |++||+.++.. ..+.++..+..+ +.+..+ |++ ...++...+||||||||++||
T Consensus 409 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~--t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 409 KSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYD--TLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred hheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccc--chhcCCCCCCCHHHHHHHHHH
Confidence 999999999999975 99999987521 122222222211 122222 232 245567788999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||+.+|+++||||||+|||+.+++.+++.|++..+++|+|++||+++++.. ||||++|++|++++.|+.+++.++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999999988789999999999999965 9999999999999999999997754
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=382.04 Aligned_cols=208 Identities=22% Similarity=0.359 Sum_probs=180.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++|++|+|++ +++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. .
T Consensus 1 ml~i~~ls~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~ 64 (530)
T PRK15064 1 MLSTANITMQFGA------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------E 64 (530)
T ss_pred CEEEEEEEEEeCC------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------C
Confidence 4789999999973 56999999999999999999999999999999999999999999999873 3
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-h----------cCCC---------------------chhHHHHHHHHHHHcCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-L----------KNLK---------------------GPALTQAVEESLKSVNL 372 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-l----------~~~~---------------------~~~~~~~~~~~l~~~~L 372 (568)
.+||+||++.+++.+|++||+.+... . .+.+ ..+.++++.++++.+|+
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999986321 0 0000 01234568889999999
Q ss_pred CCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 373 FHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 373 ~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
.+ ...++++.+||||||||++||+||+.+|+++||||||+|||+.+++.+.++|++ .|.|||++|||++++..+|||
T Consensus 145 ~~-~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 145 PE-EQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred Ch-hHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcce
Confidence 63 234578999999999999999999999999999999999999999999999974 489999999999999999999
Q ss_pred EEEEECCEE-EeecCHHHHH
Q 008362 453 LGIFVDGSL-QCIGNPKELK 471 (568)
Q Consensus 453 i~il~~G~l-~~~g~~~~l~ 471 (568)
+++|++|++ .+.|++++..
T Consensus 222 i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 222 MADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 999999999 4789887653
No 291
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-42 Score=366.43 Aligned_cols=215 Identities=24% Similarity=0.471 Sum_probs=191.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|+. ++++|+++||+|++||-+||+|+|||||||++|+|.++.. .+|+|+|||.|+.. ..+.+
T Consensus 350 ~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHh
Confidence 35999999999984 3569999999999999999999999999999999999999 99999999999975 67789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.|||+||+..||++ |+.+|+.++. .. ...+++.++.++.|+.+ ......+...|||||||||
T Consensus 424 R~~Ig~VPQd~~LFnd-TIl~NI~YGn-~s-----as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFND-TILYNIKYGN-PS-----ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhheeEeCCcccccch-hHHHHhhcCC-CC-----cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 9999999999999998 9999999742 21 22355666777777753 1124556668999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||++.||+++++|||||.||.++.+++.+.+.+...|+|+|++-|+++.+.. ||+|+++++|++++.|+.+++..
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999999997789999999999999987 99999999999999999999977
No 292
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-42 Score=323.66 Aligned_cols=159 Identities=30% Similarity=0.542 Sum_probs=147.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H-HHhh
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M-DRIY 323 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~-~~~r 323 (568)
++++|++|.|++ +++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . +..+
T Consensus 1 l~~~~l~~~~~~------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFGG------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 468999999973 4699999999999999999999999999999999999999999999999998643 2 3456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+||+|| ||||||||+++|||++.+|
T Consensus 75 ~~i~~~~q-----------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 75 AGIAMVYQ-----------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred cCeEEEEe-----------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 78999999 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++++|||||+|||+.+++.+++.+++. ++|+|||++||+++++..+|||+++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999986 468999999999999999999999999999875
No 293
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.8e-42 Score=394.18 Aligned_cols=219 Identities=26% Similarity=0.478 Sum_probs=188.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|+++.. +.+.+
T Consensus 454 ~~i~~~~vsf~y~~~----~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 454 GAITFENIRFRYAPD----SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 359999999999742 3569999999999999999999999999999999999999999999999999965 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|+. |++||+.+... ..+ ++++.++++..++.+ +....+...+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCC----HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 9999999999999986 99999987421 112 234444444444321 1234556778999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++||||||+|||+.+++.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+.+++.++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999999999988789999999999999875 999999999999999999999765
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 682 ~ 682 (694)
T TIGR01846 682 Q 682 (694)
T ss_pred C
Confidence 3
No 294
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2.9e-42 Score=387.25 Aligned_cols=216 Identities=23% Similarity=0.414 Sum_probs=186.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++ ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 5999999999973 2459999999999999999999999999999999999999999999999999965 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++|+|+||++.+|++ |++||+.++. ...+ ++++.++++.+++.+ +........+||||||||++
T Consensus 409 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRia 481 (588)
T PRK13657 409 RNIAVVFQDAGLFNR-SIEDNIRVGR--PDAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLA 481 (588)
T ss_pred hheEEEecCcccccc-cHHHHHhcCC--CCCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHH
Confidence 999999999999986 9999998742 1122 234555555555421 11233445679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+.+|++++||||||+||+.+++.+.+.|++..+++|+|++||+.+.+. .||||++|++|++++.|+.+++.++
T Consensus 482 lARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 482 IARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999999999999988877999999999998875 5999999999999999999999765
No 295
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-42 Score=336.68 Aligned_cols=193 Identities=22% Similarity=0.390 Sum_probs=159.4
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++||+|+|+++.+ ..+.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------S 67 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------E
Confidence 468999999974200 003699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC---------CCCcccccCCCCChhHHHHHHHH
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF---------HGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~---------~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+||+||++.+++ .|++||+.+.... ..+ +..+.++.+++. .+...++++.+||||||||++||
T Consensus 68 i~~~~q~~~l~~-~t~~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la 139 (204)
T cd03250 68 IAYVSQEPWIQN-GTIRENILFGKPF---DEE----RYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA 139 (204)
T ss_pred EEEEecCchhcc-CcHHHHhccCCCc---CHH----HHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence 999999999885 6999999875332 111 122222222221 01245677899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
||++.+|++++|||||+|||+.+++.+.+. +++. ++|+|||++||+++++.. |||+++|++|+
T Consensus 140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999984 5655 458999999999999998 99999999985
No 296
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4e-42 Score=384.39 Aligned_cols=218 Identities=18% Similarity=0.372 Sum_probs=187.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|+.. ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|
T Consensus 313 ~I~~~~v~~~y~~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQT----DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEEEECCCC----CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 59999999999742 3569999999999999999999999999999999999999999999999999864 456788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+.+||+||++.+|+. |++||+.++.. ..+ +++++++++..++.+ +...+....+||||||||++
T Consensus 389 ~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~ 461 (569)
T PRK10789 389 SRLAVVSQTPFLFSD-TVANNIALGRP--DAT----QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461 (569)
T ss_pred hheEEEccCCeeccc-cHHHHHhcCCC--CCC----HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999986 99999987421 112 234555566555431 12334556789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||++.+|+++||||||+|||+.+++.+++.|++..+|+|+|++||+++.+. .||||++|++|++++.|+.+++.++.
T Consensus 462 lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999998878999999999998886 49999999999999999999997654
No 297
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-42 Score=379.82 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=183.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|.|++ +.+++|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~---------- 381 (530)
T PRK15064 318 NALEVENLTKGFDN------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN---------- 381 (530)
T ss_pred ceEEEEeeEEeeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------
Confidence 47999999999973 46999999999999999999999999999999999999999999999873
Q ss_pred cceEEEcCCCC--CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDL--LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~--l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
+.+||+||++. +++.+|++||+.+... . ...+++++++++.+++.. +..++++++||||||||++||+|++.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQ-DDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCCh-hHhcCcccccCHHHHHHHHHHHHHhc
Confidence 46999999864 6677999999875321 1 122456888999999942 36899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHHhc
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKARY 474 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~~ 474 (568)
+|+++||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|++|+++ +.|+++++.+..
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999886 359999999999999999999999999998 889998887653
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7e-42 Score=381.21 Aligned_cols=207 Identities=25% Similarity=0.294 Sum_probs=180.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++|+++||+|.|++ ++++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~---------- 69 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG---------- 69 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------
Confidence 47999999999972 256999999999999999999999999999999999999999999998751
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCc----------------------hhHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKG----------------------PALTQAVEESL 367 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~-------------~~~~----------------------~~~~~~~~~~l 367 (568)
..+||+||++.+++.+|+.||+.+... ++ +... .+..+++++++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999986421 10 1110 01245678899
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+.+|+. ..++++++|||||||||+||+||+.+|+++||||||+|||+.+++.+.++|++.. .|||++||+++++.
T Consensus 150 ~~~gl~---~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~ 224 (556)
T PRK11819 150 DALRCP---PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLD 224 (556)
T ss_pred HhCCCC---cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 999994 3689999999999999999999999999999999999999999999999998864 59999999999999
Q ss_pred HhCCEEEEEECCEEE-eecCHHHH
Q 008362 448 ALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 448 ~l~dri~il~~G~l~-~~g~~~~l 470 (568)
.+||||++|++|+++ ..|+.++.
T Consensus 225 ~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeCCEEEEecCCHHHH
Confidence 999999999999986 77887764
No 299
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.1e-42 Score=338.07 Aligned_cols=200 Identities=21% Similarity=0.310 Sum_probs=165.3
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHH
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDR 321 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~ 321 (568)
.+.|+.+.|++ ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...
T Consensus 2 ~~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGS-----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCC-----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 57899999974 25699999999999999999999999999999999999999999999999887431 123
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
.|+.+||+||++.++ ..|++||+.+.... .. ++..++++.+++.+ ++..++++.+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF---NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC---CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 457899999999888 47999999875321 11 12234444455421 112457889999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN--VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~--~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++||||++.+|+++||||||+|||+.+++.+++ +++..+ +|+|||++||+++++. .||++++|++|+
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999998 566554 5899999999999986 599999999884
No 300
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.3e-42 Score=384.29 Aligned_cols=219 Identities=23% Similarity=0.467 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++.. ++.+++|+||++++||.++|+|+||||||||+|+|+|+++|++|+|.++|.++.. +...+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 336 GEIEFEQVNFAYPARP---DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred ceEEEEEEEEECCCCC---CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 3599999999997421 2569999999999999999999999999999999999999999999999999865 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++|||||++.+|++ |++||+.++.. . ..++++.++++.+++.+ +........+||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLFAA-SVMENIRYGRP-----D-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccccc-cHHHHHhcCCC-----C-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 8899999999999987 99999987421 1 11345666666666531 0122345567999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++|||++.+|++++||||||+||+.+++.+.+.+++..+++|+|++||+++... .|||++.|++|++++.|+++++.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999999999999998877999999999998875 5999999999999999999998765
No 301
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.8e-42 Score=337.30 Aligned_cols=193 Identities=21% Similarity=0.332 Sum_probs=166.0
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-ECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-VQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|. ++|..+. +| |.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~---~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LG---ANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cc---cccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 7775321 22 4567889999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
|+.+....++.+.++.. +.+.+..++. +..++++++||||||||+++|||++.+|+++||||||+++|+.+++.+
T Consensus 69 nl~~~~~~~~~~~~~~~---~~~~~~~~l~--~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~ 143 (213)
T PRK15177 69 NARMMASLYGLDGDEFS---HFCYQLTQLE--QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRM 143 (213)
T ss_pred HHHHHHHHcCCCHHHHH---HHHHHHhChh--HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 99998776654433322 2334556775 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 424 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 424 ~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++.+.+..+++++|++||++++++.+||++++|++|+++..|+.++.++.+
T Consensus 144 ~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 194 (213)
T PRK15177 144 QAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALF 194 (213)
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHH
Confidence 998865444578999999999999999999999999999999999987654
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=383.60 Aligned_cols=223 Identities=25% Similarity=0.387 Sum_probs=198.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 321 (568)
++++++|++|+|++.. +.+.+++|+||++++||+++|+||||||||||+|+|+|+.+|++|++.++|+++... .++
T Consensus 3 ~~l~~~nl~~~y~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 3 ALLELKDIRRSYPSGE--EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred cEEEEeeEEEEeCCCC--CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 4799999999996321 125699999999999999999999999999999999999999999999999998652 222
Q ss_pred --h-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 322 --I-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 322 --~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
. ++.+||+||++.+++.+|+.||+.+.....+...++.++++.++++.++|. +..++++++||||||||++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh--hhhcCCcccCCHHHHHHHHHHHH
Confidence 2 568999999999999999999999865555555556667889999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|+.+|++++|||||+|||+.+++.+.+++++++ +|+|+|++||+++.++ .|||+++|++|+++..|++++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999864 6999999999999986 59999999999999999998764
No 303
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.6e-42 Score=347.03 Aligned_cols=234 Identities=26% Similarity=0.430 Sum_probs=210.6
Q ss_pred CCeEEEEeEEEEcCCCCC-----CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDG-----NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~-----~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
...++.++++..|.-++| .....|++++||++++||..||+|.+|||||||=.+|.++++++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 346899999999975433 12357999999999999999999999999999999999999876 999999999963
Q ss_pred ----cHHHhhcceEEEcCCC--CCCCCCCHHHHHHHHhhhcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 318 ----DMDRIYTSMGVCPQED--LLWETLTGREHLLFYGRLKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 318 ----~~~~~r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
.+..+|+++-+|||+| .|-|.|||.|.+.-+..+++ .+..+..+++.++|+++||++ .-++++++++||||
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp-~~r~RYPhEFSGGQ 431 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP-ATRNRYPHEFSGGQ 431 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh-hHhhcCCcccCcch
Confidence 3456789999999997 58999999999998887764 567788889999999999986 68999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|||++||||++-+|++++||||||+||..-+.++.++++++ +.|.+-+++|||+..+..+||+|++|.+|++++.|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 99999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HHHHHhcCCcE
Q 008362 468 KELKARYGGSY 478 (568)
Q Consensus 468 ~~l~~~~~~~~ 478 (568)
+++.+.....|
T Consensus 512 ~~if~~P~~~Y 522 (534)
T COG4172 512 EAVFANPQHEY 522 (534)
T ss_pred HHHhcCCCcHH
Confidence 99988765544
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.3e-42 Score=330.98 Aligned_cols=191 Identities=20% Similarity=0.280 Sum_probs=166.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++|++|+|++ +.++ ++||++++||++||+|+||||||||+++|+|+.+|++|+|.++|.++.... ++
T Consensus 1 ~l~~~~l~~~~~~------~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQ------KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---KP 70 (195)
T ss_pred CeEEEEeeEEECC------cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---hh
Confidence 3789999999963 3455 599999999999999999999999999999999999999999999875321 35
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.++|++|++.+++.+|++||+.+.....+ ..+++.++++.+++. +..++++++||||||||+++|||++.+|+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LS~G~~~rl~la~al~~~p~ 143 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLH--DLLDEKCYSLSSGMQKIVAIARLIACQSD 143 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCH--hhhccChhhCCHHHHHHHHHHHHHhcCCC
Confidence 68999999888888999999988654432 134677888999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEE
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri 453 (568)
+++|||||+|||+.+++.+++++++. ++|+|||++||++++++. ||.+
T Consensus 144 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 144 LWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 99999999999999999999999864 568999999999999876 7765
No 305
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=339.55 Aligned_cols=198 Identities=24% Similarity=0.440 Sum_probs=177.8
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHhhcceEEEcCCCCCCCCCCHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
=+++|+.+...++||.|++|||||||+|||+|+.+|++|.|.+||.-+... ...-+++|||+||+..|||.+||+
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 367889888789999999999999999999999999999999999876432 223468899999999999999999
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
.||.|.... . .....+++.+.+|+++ ..++++.+|||||||||+|+|||+..|++++||||.|.||..-+++
T Consensus 95 gNL~YG~~~-~-----~~~~fd~iv~lLGI~h--LL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 95 GNLRYGMWK-S-----MRAQFDQLVALLGIEH--LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred cchhhhhcc-c-----chHhHHHHHHHhCcHH--HHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 999985321 1 3456788899999975 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 423 LWNVVKRAKQ--GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 423 i~~~l~~~~~--g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+...++++.+ +..|+.+||+++|+.++||||++|++|++.+.|..+++.++
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999753 78999999999999999999999999999999999998654
No 306
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=6.8e-42 Score=382.96 Aligned_cols=218 Identities=24% Similarity=0.423 Sum_probs=187.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++||+++|++. ++++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. +.+..|
T Consensus 330 ~i~~~~v~f~y~~~----~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGR----DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred eEEEEEEEEEcCCC----CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 59999999999642 2569999999999999999999999999999999999999999999999999864 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++++||||++.+|+. |++||+.++. -+ +..++++.++++.+++.+ +.........||||||||++
T Consensus 406 ~~i~~v~Q~~~lf~~-Ti~~Ni~~~~-~~----~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 406 RQVALVSQDVVLFND-TIANNIAYGR-TE----QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred hhceEEccCcccccc-cHHHHHhcCC-CC----CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 999999999999987 9999998752 11 122345666777776631 01122334579999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||++.+|++++||||||+||+.+++.+.+.|++..+++|+|++||+.+... .||+|++|++|+++..|+.+++.++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999998878899999999997764 6999999999999999999998654
No 307
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.2e-41 Score=383.07 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=188.6
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|+++.. ...++.+|||||++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999999885 8999999998753 45678899999999999999
Q ss_pred CHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCC------CCChhHHHHHHHHHHHcCCCCEEEEeC
Q 008362 340 TGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAG------KYSGGMKRRLSVAISLIGNPKVVYMDE 410 (568)
Q Consensus 340 Tv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~------~LSgG~kqrl~la~Al~~~p~lllLDE 410 (568)
||+||+.|.++++. .+.++.+++++++++.+||.+ .+|++++ .||||||||++||+||+.+|++++|||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK--CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh--cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 99999999887753 234556678999999999974 6788776 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 411 PSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+|||+.++..+++.+++. ++|+|||+++|++. ++..+|||+++|++|+++..|+++++++.+.
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 99999999999999999986 45999999999995 8889999999999999999999999987664
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-41 Score=374.42 Aligned_cols=216 Identities=23% Similarity=0.301 Sum_probs=179.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCC--cH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRT--DM 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~--~~ 319 (568)
.++++++|++|.|++ +.+++|+||++++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++.. ..
T Consensus 258 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~ 331 (490)
T PRK10938 258 EPRIVLNNGVVSYND------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI 331 (490)
T ss_pred CceEEEeceEEEECC------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH
Confidence 457999999999973 4699999999999999999999999999999999998876 79999999987632 22
Q ss_pred HHhhcceEEEcCCCCCCCC--CCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWET--LTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~--lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
...++++||+||++.++.. .|+++++.+... ..+...++.+++++++++.++|.+ +..++++++|||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch-hhccCchhhCCHHHHHHH
Confidence 3456789999998765442 467666643211 111112334567889999999962 267999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCC-ceEEEEcCCHHHHHH-hCCEEEEEECCEEEeec
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQG-RAIILTTHSMEEAEA-LCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g-~tiil~tH~~~e~~~-l~dri~il~~G~l~~~g 465 (568)
+||+||+.+|+++||||||+|||+.+++.++++|+++ +++ .|||++|||++++.. +|||+++|++|+++..-
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999986 455 579999999999987 69999999999987654
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.2e-41 Score=374.81 Aligned_cols=207 Identities=25% Similarity=0.311 Sum_probs=178.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+++++||+|+|++ ++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ +
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~ 67 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------G 67 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------C
Confidence 47999999999962 24699999999999999999999999999999999999999999999875 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hc-------------CCCchh----------------------HHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LK-------------NLKGPA----------------------LTQAVEESL 367 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~-------------~~~~~~----------------------~~~~~~~~l 367 (568)
..+||+||++.+++.+|++||+.+... .+ +.+..+ ..+++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 469999999999999999999987421 10 111111 124566778
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+.+++. ..++++++||||||||++|||||+.+|+++||||||++||+.+++.+.+.|++.. .|||++||+++++.
T Consensus 148 ~~~~l~---~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~ 222 (552)
T TIGR03719 148 DALRCP---PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLD 222 (552)
T ss_pred hhCCCC---cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHH
Confidence 888884 3688999999999999999999999999999999999999999999999998763 59999999999999
Q ss_pred HhCCEEEEEECCEEE-eecCHHHH
Q 008362 448 ALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 448 ~l~dri~il~~G~l~-~~g~~~~l 470 (568)
.+|||+++|++|+++ +.|+.++.
T Consensus 223 ~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 223 NVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred hhcCeEEEEECCEEEEecCCHHHH
Confidence 999999999999976 67888764
No 310
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3e-42 Score=313.85 Aligned_cols=201 Identities=26% Similarity=0.429 Sum_probs=183.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
+.++|+++||++.+||..+|.||+|||||||+|+++-+.+||+|++++.|+++++ ..+..|++++||.|.+.||++ ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 3579999999999999999999999999999999999999999999999999976 678899999999999999998 99
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
++|+.|.-+++.... .+....++|+++++.+ ...++++.+||||||||++++|-|.-.|++|+||||||+||+.+++
T Consensus 94 eDNlifP~~~r~rr~--dr~aa~~llar~~l~~-~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 94 EDNLIFPWQIRNRRP--DRAAALDLLARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred hhccccchHHhccCC--ChHHHHHHHHHcCCch-hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 999999888875332 3467788999999986 6889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 422 NLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 422 ~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
.+-++|.++ .++++++.+|||-+++.+.+|+++-+..|++ |..+++
T Consensus 171 ~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~---~~~~e~ 218 (223)
T COG4619 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218 (223)
T ss_pred HHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc---cccccc
Confidence 999999885 3689999999999999999999999999965 444443
No 311
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.2e-41 Score=318.76 Aligned_cols=164 Identities=27% Similarity=0.385 Sum_probs=148.3
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
|+++|++++|++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~ 65 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------ED 65 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ce
Confidence 468999999963 246999999999999999999999999999999999999999999999873 57
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+||++.++ ..|++||+.+. ++.+||||||||+++|||++.+|++
T Consensus 66 i~~~~q~~~~~-~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 66 LLFLPQRPYLP-LGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EEEECCCCccc-cccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998776 57999998752 3468999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++|||||+|||+.+++.+.+++++. ++|+|++||+++.+ .+|||+++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 9999999999999999999999876 68999999999876 5899999998763
No 312
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=8.1e-41 Score=341.46 Aligned_cols=202 Identities=21% Similarity=0.331 Sum_probs=168.3
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
....|+++|+++. + +.+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~-~-------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------- 98 (282)
T cd03291 36 DDNNLFFSNLCLV-G-------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------- 98 (282)
T ss_pred CCCeEEEEEEEEe-c-------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---------
Confidence 3457999999985 2 3599999999999999999999999999999999999999999999988
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
.++|+||++.+++. |++||+.+.... .. .++.+.++.+++.+ ....++++.+||||||||
T Consensus 99 ---~i~yv~q~~~l~~~-tv~enl~~~~~~---~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 99 ---RISFSSQFSWIMPG-TIKENIIFGVSY---DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred ---EEEEEeCccccccc-CHHHHhhccccc---CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 28999999988885 999999864321 11 11222233333310 012345678999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++|||||+.+|+++||||||+|||+.+++.+.+.+ ++.++++|||++||+++++. .|||+++|++|+++..|+++++.
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999865 55666899999999999985 79999999999999999999886
Q ss_pred H
Q 008362 472 A 472 (568)
Q Consensus 472 ~ 472 (568)
+
T Consensus 247 ~ 247 (282)
T cd03291 247 S 247 (282)
T ss_pred h
Confidence 4
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.9e-41 Score=373.82 Aligned_cols=209 Identities=24% Similarity=0.355 Sum_probs=180.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-------- 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-------- 386 (556)
T ss_pred CeEEEEEeEEEEECC------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999853 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++ .+++.+|++||+.+.....+.... ....+++++.+++.+ ...++++++||||||||++||+|++.
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKG-GDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1599999996 788899999999886543332222 223557899999952 35799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-CEEE-eecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|++.. + |||++|||+++++.+|||+++|++ |++. ..|+.++..+
T Consensus 463 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 463 GGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999999874 4 899999999999999999999996 7876 5788777654
No 314
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.2e-41 Score=337.48 Aligned_cols=190 Identities=25% Similarity=0.336 Sum_probs=161.8
Q ss_pred ceeeeeEEEEe-----CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 265 VAVNGLSLALP-----SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 265 ~al~~isl~i~-----~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
..++|++|+++ +||++||+||||||||||+++|+|+.+|++|+|.++|. .++|+||+...+..+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCCC
Confidence 36777777776 79999999999999999999999999999999999984 589999998877789
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~ 419 (568)
|++|++.+.....+ . .....+++++.+++. +..++++++||||||||++||+||+.+|+++||||||++||+.+
T Consensus 77 tv~e~l~~~~~~~~--~--~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~ 150 (246)
T cd03237 77 TVRDLLSSITKDFY--T--HPYFKTEIAKPLQIE--QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ 150 (246)
T ss_pred CHHHHHHHHhhhcc--c--cHHHHHHHHHHcCCH--HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999976533221 1 123467889999996 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEE--eecCHHHHH
Q 008362 420 RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIGNPKELK 471 (568)
Q Consensus 420 r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~--~~g~~~~l~ 471 (568)
++.+.++|++. + .|+|||++||+++++..+|||+++|+++... ..+++..++
T Consensus 151 ~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 151 RLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999986 3 4899999999999999999999999765332 445555543
No 315
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.1e-40 Score=371.49 Aligned_cols=209 Identities=24% Similarity=0.342 Sum_probs=180.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|+++.|++ +.+++|+||+|++||++||+||||||||||+++|+|+.+|++|+|++++ +
T Consensus 320 ~~~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-------- 384 (552)
T TIGR03719 320 DKVIEAENLSKGFGD------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-------- 384 (552)
T ss_pred CeEEEEeeEEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c--------
Confidence 357999999999973 5699999999999999999999999999999999999999999999844 2
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
..+||+||++ .+++.+|+.||+.+.....+.... ..+++++++.+++.. ...++++++|||||||||+||+||+.
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKG-SDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCCh-hHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 1599999986 588889999999886543333221 234567899999952 25689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC-CEEE-eecCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD-GSLQ-CIGNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~-G~l~-~~g~~~~l~~ 472 (568)
+|+++||||||+|||+.+++.++++|++.. + |||++|||++++..+|||+++|++ |++. ..|+.++.++
T Consensus 461 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 461 GGNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999874 3 899999999999999999999997 5876 5677766544
No 316
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-41 Score=386.77 Aligned_cols=223 Identities=27% Similarity=0.495 Sum_probs=196.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||++.|+.+ ++.++++|+||++++||.+||+||+||||||.+.+|-..+.|++|.|.|||+|+++ +.+.+|
T Consensus 987 ~I~~~~V~F~YPsR---P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR---PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeEeeCCCC---CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 59999999999975 46889999999999999999999999999999999999999999999999999976 778899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCC-------CC--CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNL-------FH--GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L-------~~--~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||.|.|+|.||.. |++||+.++ ..+ .+ .+++.++++..+. ++ +.....+..+||||||||++
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG-~~~-vs----~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYG-SEE-VS----EEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhcc-CCC-CC----HHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 999999999999996 999999986 222 33 3445555555543 22 12344556689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||++.||+||||||.||+||.++.+.+.+.|.+...|||.|++.|.+..+.. ||.|+++++|++++.|+.++|.++-
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999975 9999999999999999999999865
Q ss_pred CCcE
Q 008362 475 GGSY 478 (568)
Q Consensus 475 ~~~~ 478 (568)
|.-|
T Consensus 1216 G~Y~ 1219 (1228)
T KOG0055|consen 1216 GIYF 1219 (1228)
T ss_pred CchH
Confidence 5443
No 317
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.5e-41 Score=409.11 Aligned_cols=218 Identities=18% Similarity=0.349 Sum_probs=191.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+|
T Consensus 1234 ~I~f~nVsf~Y~~~----~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG----LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCC----CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 59999999999632 2569999999999999999999999999999999999999999999999999975 567889
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++++|+||++.+|++ |++|||.++. .. .++++.++++..++.+ +........+||||||||++
T Consensus 1310 ~~i~iVpQdp~LF~g-TIr~NL~~~~---~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrla 1381 (1495)
T PLN03232 1310 RVLSIIPQSPVLFSG-TVRFNIDPFS---EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLS 1381 (1495)
T ss_pred hhcEEECCCCeeeCc-cHHHHcCCCC---CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHH
Confidence 999999999999997 9999998642 11 2345667777776632 01233445689999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|||||+.+|+|+|||||||+||+++.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++.
T Consensus 1382 LARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1382 LARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999988789999999999999986 9999999999999999999998754
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
+
T Consensus 1461 ~ 1461 (1495)
T PLN03232 1461 T 1461 (1495)
T ss_pred C
Confidence 3
No 318
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.5e-40 Score=322.03 Aligned_cols=199 Identities=27% Similarity=0.431 Sum_probs=183.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcC-CCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQ-EDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q-~~~l~~~lTv 341 (568)
.+.||+||||++++||.+||+|+||||||||+|+|+|.++||+|+|.++|+-- .... .-.+-|.+|+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~------------~li~lg~Gf~pelTG 106 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA------------PLIELGAGFDPELTG 106 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe------------hhhhcccCCCcccch
Confidence 57899999999999999999999999999999999999999999999999531 1111 1234567999
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+||+.+.+.+.|.++++.++.++++.+.-+|. ++.|+|++++|.||+-||++|.|...+|++||+||-.+--|+.-++
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG--~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~ 184 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELG--DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQE 184 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH--HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHH
Confidence 99999999999999999999999999999996 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 422 NLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 422 ~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+-.+.+.+. ++++|||++|||++.+.++|||++.|++|+++..|++++..+.|.
T Consensus 185 K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~ 239 (249)
T COG1134 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYE 239 (249)
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHH
Confidence 999999987 678999999999999999999999999999999999999987764
No 319
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.4e-41 Score=407.81 Aligned_cols=218 Identities=21% Similarity=0.368 Sum_probs=191.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+
T Consensus 1236 g~I~f~nVsf~Y~~~----~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE----LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred CcEEEEEEEEEeCCC----CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 359999999999642 2469999999999999999999999999999999999999999999999999976 67789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||++||++.||+. |++|||..+. . ..++++.++++..++.+ +........+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~----~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---E----HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---C----CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999999997 9999998642 1 12345667777766531 0122334568999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998789999999999999986 999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 1463 ~ 1463 (1622)
T PLN03130 1463 E 1463 (1622)
T ss_pred C
Confidence 3
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.8e-41 Score=403.29 Aligned_cols=218 Identities=22% Similarity=0.372 Sum_probs=187.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---------------------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT--------------------- 303 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--------------------- 303 (568)
.|+++||+++|+++. ++++|+|+||+|++||++||+|||||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~---~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRP---NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEEEECCCCC---CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 599999999997532 35799999999999999999999999999999999999998
Q ss_pred ---------------------------------CceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 304 ---------------------------------TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 304 ---------------------------------~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
++|+|+++|.|+.. +.+.+|++||||||++.||+. |++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence 69999999999975 667889999999999999975 9999999852
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r 420 (568)
. . ..+++++++++..++.+ +........+||||||||++|||||+.+|+|||||||||+||+.+.
T Consensus 1321 ~--~----at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE 1394 (1466)
T PTZ00265 1321 E--D----ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394 (1466)
T ss_pred C--C----CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 1 12345666666666531 1122344567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC----CEEE-eecCHHHHHHh
Q 008362 421 NNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD----GSLQ-CIGNPKELKAR 473 (568)
Q Consensus 421 ~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~----G~l~-~~g~~~~l~~~ 473 (568)
+.+.+.|.+.. +++|+|++||+++.+.. ||+|++|++ |+++ +.|+.++|.++
T Consensus 1395 ~~I~~~L~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHHHHHHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHhc
Confidence 99999999873 69999999999998875 999999999 9955 89999999763
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-40 Score=336.06 Aligned_cols=202 Identities=21% Similarity=0.331 Sum_probs=171.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-----------i~G~~i~~ 317 (568)
.||+|+|++ .+.+++|+| .+++||+++|+||||||||||+|+|+|+++|++|+|. ++|+++..
T Consensus 4 ~~~~~~y~~-----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPVHRYGP-----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcceeecC-----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 578999973 236999999 4999999999999999999999999999999999996 78888754
Q ss_pred cHHHhh---cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 318 DMDRIY---TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 318 ~~~~~r---~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
...+.+ ..+++++|+..+++. ++.+++.... ...+.++.+.++++.+|+. +..++++.+||||||||++
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELR--HVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHHHH
Confidence 322222 247999999888884 8888887642 1233456788999999996 3689999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+|||++.+|++++|||||+|||+.+++.+.+++++++ +++|||++||+++++..+||++++| +|++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999999864 5899999999999999999999999 46665433
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.7e-40 Score=368.57 Aligned_cols=200 Identities=26% Similarity=0.485 Sum_probs=173.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++|++++|++. ++++++|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++.. +.+.+|
T Consensus 320 ~i~~~~v~f~y~~~----~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGR----RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEEEECCCC----CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 59999999999742 2469999999999999999999999999999999999999999999999999965 557789
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
+++|||||++.+|+. |++||+.++.. .. .++++.++++..++.+ +........+||||||||++
T Consensus 396 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~----~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 396 DQIAWVPQHPFLFAG-TIAENIRLARP--DA----SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred hheEEEcCCCcccCc-CHHHHHhccCC--CC----CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 999999999999986 99999987531 11 1345667777776642 11233456789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+|||++.+|++++||||||+||+.+.+.+.+.+++..+++|+|++||+++.+. .||||++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999999999998878999999999999985 59999875
No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=370.07 Aligned_cols=205 Identities=23% Similarity=0.390 Sum_probs=179.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.+++.
T Consensus 310 ~~~l~~~~l~~~y~~------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------- 374 (638)
T PRK10636 310 NPLLKMEKVSAGYGD------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--------- 374 (638)
T ss_pred CceEEEEeeEEEeCC------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---------
Confidence 457999999999973 56999999999999999999999999999999999999999999998741
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++||++|+. .+.+..|+.+++.-. ......+++.++|+.+++.. +..++++++|||||||||+||+||+
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL------APQELEQKLRDYLGGFGFQG-DKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh------CchhhHHHHHHHHHHcCCCh-hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 2599999974 456667888876421 11223467889999999952 3678999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 472 (568)
.+|++|||||||+|||+.+++.+.+.|+++ +| |||++|||+++++.+|||+++|++|+++ +.|+.++..+
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999999999999987 34 9999999999999999999999999997 7899988743
No 324
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.2e-40 Score=335.99 Aligned_cols=237 Identities=24% Similarity=0.356 Sum_probs=208.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-----CceEEEECCeeCCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-----TSGTAYVQGLDIRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-----~~G~i~i~G~~i~~ 317 (568)
.+.+.++||+..|+..+ ....|+++|||++++||.+||+|.+|||||-+.+.+.|+++- -+|+|.++|.|+-.
T Consensus 4 ~~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 35799999999997543 357899999999999999999999999999999999999864 37899999999843
Q ss_pred ----cHHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCC-CCcccccCCCCChh
Q 008362 318 ----DMDRIY-TSMGVCPQED--LLWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFH-GGVADKQAGKYSGG 388 (568)
Q Consensus 318 ----~~~~~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~~LSgG 388 (568)
....+| .+|+++||+| .|.|-.|+...+.-..++ +|.++++.++++.++|+.+|+.+ +...+.++++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 233444 3799999998 588888998888776665 47788889999999999999974 23468899999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||||.||+||+.+|++||.||||++||..-+.+|.++|++++ -|.+++++|||+..+.++||||+||.+|++++.|+
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 9999999999999999999999999999999999999999864 49999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEE
Q 008362 467 PKELKARYGGSYVFT 481 (568)
Q Consensus 467 ~~~l~~~~~~~~~l~ 481 (568)
.+.+.....+.|+-.
T Consensus 242 t~~lF~~PqHpYTr~ 256 (534)
T COG4172 242 TETLFAAPQHPYTRK 256 (534)
T ss_pred HHHHhhCCCChHHHH
Confidence 999998887777643
No 325
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.1e-40 Score=400.47 Aligned_cols=217 Identities=18% Similarity=0.312 Sum_probs=190.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+++ ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ ..+.+
T Consensus 1283 g~I~f~nVsf~Y~~~----~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED----LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred CcEEEEEEEEEeCCC----CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 369999999999742 2469999999999999999999999999999999999999999999999999976 66789
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||++||++.||++ |++|||..+. ..+ ++++.++++.+++.+ +........+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999998 9999997432 112 345677777777641 0122334457999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999886 999999999999999999999875
No 326
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.3e-40 Score=398.47 Aligned_cols=216 Identities=21% Similarity=0.386 Sum_probs=189.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.|+++||+++|++. ...+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+ +.+.+|
T Consensus 1308 ~I~f~nVsf~Y~~~----~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREG----LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCC----CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 59999999999742 2459999999999999999999999999999999999999999999999999976 667899
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Cccc----ccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVAD----KQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~----~~~~~LSgG~kqrl~ 394 (568)
++|||+||++.||+. |++|||..+. +..++++.++++.+++.+. +-.| ....+||||||||++
T Consensus 1384 ~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLa 1455 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455 (1560)
T ss_pred hcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHH
Confidence 999999999999997 9999996431 1123568888888887520 0122 334579999999999
Q ss_pred HHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~-p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+++ |++||||||||+||+.+.+.+.+.|++..+++|||+++|+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1456 LARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1456 MARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999995 9999999999999999999999999988789999999999998875 999999999999999999999764
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1e-39 Score=364.08 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=174.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++++++|++|.|++ ..++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~~-------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----------- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLGD-------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----------- 399 (590)
T ss_pred ceEEEEcceEEEECC-------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-----------
Confidence 357999999999963 25999999999999999999999999999999999999999999885
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
.++||+||+..+++.+||+|++.+..... . ....++++++.++|. +..++++.+|||||||||+||+||+.+
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~--~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLE--RLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCH--HHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 14899999988888999999998753211 1 123568899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|+++||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+|||+++|+ |++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999986 3 48999999999999999999999996 57776665
No 328
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.4e-40 Score=365.20 Aligned_cols=187 Identities=27% Similarity=0.507 Sum_probs=162.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+++|++ ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.|+..-.+.+|+
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 5999999999974 24599999999999999999999999999999999999999999999999999655667889
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
++||+||++.+|++ |++||+.++. ++..++++.++++..++.+ +........+||||||||++|
T Consensus 409 ~i~~V~Q~~~lF~~-TI~eNI~~g~------~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiai 481 (529)
T TIGR02868 409 RISVFAQDAHLFDT-TVRDNLRLGR------PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLAL 481 (529)
T ss_pred heEEEccCcccccc-cHHHHHhccC------CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHH
Confidence 99999999999997 9999999852 1122456777777777642 011223445799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
|||++.+|+++|||||||+||+.+.+.+.+.+++..+++|+|++||++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999888899999999974
No 329
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.1e-39 Score=363.20 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=174.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|++++|++ ++++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|+++.. +.+.+|
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 5999999999973 2469999999999999999999999999999999999999999999999999865 556788
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~~LSgG~kqrl~la~A 398 (568)
++++|+||++.+|+. |++|| + ....++++++.++.+++.+ ..+. ...+||||||||++||||
T Consensus 397 ~~i~~v~q~~~lf~~-ti~~n--------~--~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 397 KLFSAVFTDFHLFDQ-LLGPE--------G--KPANPALVEKWLERLKMAH--KLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred hheEEEecChhHHHH-hhccc--------c--CchHHHHHHHHHHHcCCch--hhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999986 88887 1 1223456788889998863 2221 145899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
++.+|+++||||||++||+.+++.+++.+.+. + +|+|+|++||+++.+. .||||++|++|++++.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSEL 530 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998764 3 5899999999997765 6999999999999876
No 330
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-40 Score=310.26 Aligned_cols=221 Identities=25% Similarity=0.349 Sum_probs=186.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r- 323 (568)
++.++|++|.|.+... .+++|++++|++|++|+++.++|.||||||||+++|+|-++||+|+|.|+|.|+...+..-|
T Consensus 1 Mi~~~~~~~~f~~g~~-~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTP-LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCCh-hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHh
Confidence 4677899998875322 36789999999999999999999999999999999999999999999999999976443333
Q ss_pred cceEEEcCCC--CCCCCCCHHHHHHHHhhh---cCCCc---hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 324 TSMGVCPQED--LLWETLTGREHLLFYGRL---KNLKG---PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 324 ~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l---~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
..++-|+|+| ..++.||++||+.+...- +|+.. ...++...+.++.+++.-++..+.+++-|||||||-+++
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 4578899997 578999999999985432 23332 233444556667666543457899999999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
++|-++.|++++|||-|++|||.....+.+.-.+. +.+.|.+|+||+|+.|-.+.+|.++|++|+|+.+-+
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999999999999999999999999999998885 357899999999999999999999999999987654
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.2e-40 Score=395.78 Aligned_cols=210 Identities=22% Similarity=0.400 Sum_probs=176.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE-CCeeCCC-cHHHh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV-QGLDIRT-DMDRI 322 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i-~G~~i~~-~~~~~ 322 (568)
.|+++||++.|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|+++.. +...+
T Consensus 382 ~I~~~nVsf~Y~~~~---~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRK---DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEEEEcCCCC---CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 599999999997431 357999999999999999999999999999999999999999999999 5688854 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhh-cCC-----------------------------------------------
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRL-KNL----------------------------------------------- 354 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l-~~~----------------------------------------------- 354 (568)
|++|||+||++.+|+. |++||+.+.... ++.
T Consensus 459 r~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 8999999999999985 999999985310 000
Q ss_pred ---CchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 355 ---KGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 355 ---~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
.....++++.++++.+++.+ +...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~ 617 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 00112356777777777642 011356788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 423 LWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 423 i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+.+.|++.+ +|+|+|++||+++.++ .||||++|++|
T Consensus 618 i~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g 655 (1466)
T PTZ00265 618 VQKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence 999999874 5899999999999985 79999999986
No 332
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.6e-40 Score=302.12 Aligned_cols=228 Identities=25% Similarity=0.345 Sum_probs=202.5
Q ss_pred eEEEEeEEEEcCCCCC---CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDG---NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~---~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
.++++||+|.|..+.+ +....|++.|||++++|+..|++|.||||||||.|||+|+++||+|+|.+||+.+....-.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 5789999999875432 2346799999999999999999999999999999999999999999999999998653333
Q ss_pred hh-cceEEEcCCC--CCCCCCCHHHHHHHHhhhc-CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 322 IY-TSMGVCPQED--LLWETLTGREHLLFYGRLK-NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 322 ~r-~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
.| ++|-++||++ .+.|.+.+.+.|....++. .+..++..+++.+.|+.+||-+ ++++-+++.||-||||||++||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~P-dhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCc-cccccchhhcCchhHHHHHHHH
Confidence 33 6799999997 5788888888888877664 3556677788999999999986 7999999999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||+-+|+++|.||..++||...|.++.++..++ +.|.+.|.++.++..+..++|.|++|++|++++.|++.++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 999999999999999999999999999998875 4599999999999999999999999999999999999998753
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.8e-39 Score=366.82 Aligned_cols=207 Identities=21% Similarity=0.288 Sum_probs=178.8
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++||+|.|++ +++++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~------- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDG------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL------- 382 (635)
T ss_pred CceEEEeeeEEEECC------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-------
Confidence 357999999999973 56999999999999999999999999999999999999999999998 5432
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+||++|+. .+++.+||.||+.+........ ....++.++++.+++.. +..++++++|||||||||+||+||+.
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHP-KRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCH-HHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 599999985 6889999999998753211111 12346788899999952 35789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE-CCEEEe-ecCHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV-DGSLQC-IGNPKEL 470 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~-~G~l~~-~g~~~~l 470 (568)
+|++|||||||+|||+.+++.+.+++++. +.|||++|||++++..+|||+++|+ +|++.. .|+.++.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999876 4599999999999999999999998 899866 5666665
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.8e-39 Score=361.90 Aligned_cols=207 Identities=18% Similarity=0.278 Sum_probs=176.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|++..+ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.+
T Consensus 336 ~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 35999999999974211 12369999999999999999999999999999999999999999999999999965 45678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc------CCCCChhHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ------AGKYSGGMKRRLSVA 396 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~~~LSgG~kqrl~la 396 (568)
|+.++|++|++.+|++ |+++|.. ++..++++.++++.+++.+ ..++. ..+||||||||++||
T Consensus 415 ~~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~--~~~~lp~g~~t~~~LSgGq~qRlala 482 (555)
T TIGR01194 415 RDLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIAD--KVKIEDGGFSTTTALSTGQQKRLALI 482 (555)
T ss_pred HhhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCch--hhcccccccCCcccCCHHHHHHHHHH
Confidence 8999999999999986 8888841 1233566888999999863 33222 367999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK-RA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~-~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
||++.+|+++||||||++||+.+++.+.+.+. .. .+|+|+|++||+++.++ .||+|++|++|++++.
T Consensus 483 Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 483 CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998664 44 46899999999998775 6999999999999865
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.7e-39 Score=298.53 Aligned_cols=144 Identities=31% Similarity=0.500 Sum_probs=136.0
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTS 325 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ 325 (568)
++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|. +.
T Consensus 1 l~~~~l~~~~~~------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~ 64 (144)
T cd03221 1 IELENLSKTYGG------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VK 64 (144)
T ss_pred CEEEEEEEEECC------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EE
Confidence 468999999973 46999999999999999999999999999999999999999999999984 46
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 326 MGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 326 ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
++|+|| ||+||+||++|||||+.+|++
T Consensus 65 i~~~~~-----------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 65 IGYFEQ-----------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEEEcc-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++|||||+|||+.+++.+++.++++ ++|||++||+++++..+|||+++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999999999999999985
No 336
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-39 Score=361.80 Aligned_cols=205 Identities=20% Similarity=0.285 Sum_probs=169.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~---------- 64 (638)
T PRK10636 1 MIVFSSLQIRRGV------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW---------- 64 (638)
T ss_pred CEEEEEEEEEeCC------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------
Confidence 4889999999974 579999999999999999999999999999999999999999999998842
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHH-----------------------Hhhhc----CCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLF-----------------------YGRLK----NLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~-----------------------~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
.+||++|++..+. .|+.+++.- +..+. .....+.+.+++++++.+|+.+ +.
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~-~~ 142 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN-EQ 142 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-hh
Confidence 3677777543322 354443321 11111 1111234567889999999962 36
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.++++++|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++. +.|||++|||++++..+|||+++|+
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 79999999999999999999999999999999999999999999999999876 4699999999999999999999999
Q ss_pred CCEEE-eecCHHH
Q 008362 458 DGSLQ-CIGNPKE 469 (568)
Q Consensus 458 ~G~l~-~~g~~~~ 469 (568)
+|++. ..|+.+.
T Consensus 221 ~G~i~~~~g~~~~ 233 (638)
T PRK10636 221 QQSLFEYTGNYSS 233 (638)
T ss_pred CCEEEEecCCHHH
Confidence 99996 4676554
No 337
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=315.21 Aligned_cols=217 Identities=25% Similarity=0.383 Sum_probs=188.4
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cH-
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DM- 319 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~- 319 (568)
..+.|+++|++.+|++ +++|+|+|++|++||-.+|+||||||||||+++++|..+|++|.+.+.|+...+ +.
T Consensus 28 ~~~li~l~~v~v~r~g------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRRNG------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEECC------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 3457999999999984 789999999999999999999999999999999999999999999999998853 33
Q ss_pred HHhhcceEEEcC--CCCCCCCCCHHHHHHH--Hhhh--cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 320 DRIYTSMGVCPQ--EDLLWETLTGREHLLF--YGRL--KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 320 ~~~r~~ig~~~Q--~~~l~~~lTv~e~l~~--~~~l--~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
.++|++||+|.- +..+.+..+|+|-+.- ++.+ +. ...++..+++..+++.+|+.+ .++++.++||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~--la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH--LADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh--hccCchhhcCHhHHHH
Confidence 789999999974 3445566788886642 2221 11 234556678999999999974 8999999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+-|||||+.+|+++|||||++|||..+|..+.+.+.+.. .+.++|++||+.+|+-...+++..+++|+++..|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999998852 37899999999999999999999999999998773
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.1e-39 Score=388.68 Aligned_cols=211 Identities=19% Similarity=0.267 Sum_probs=183.5
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC----CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 338 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~ 338 (568)
++++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998754334456779999999999999
Q ss_pred CCHHHHHHHHhhhcC-------CCchhHHHH-HHHHHHHcCCCCCCccccc-----CCCCChhHHHHHHHHHHHcCCCCE
Q 008362 339 LTGREHLLFYGRLKN-------LKGPALTQA-VEESLKSVNLFHGGVADKQ-----AGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 339 lTv~e~l~~~~~l~~-------~~~~~~~~~-~~~~l~~~~L~~~~~~~~~-----~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
+||+|++.|.++++. .++++..++ ++++++.+||.+ .+|++ ++.|||||||||+||+||+.+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH--TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc--ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 999999999877652 222332333 467899999974 55554 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
++|||||+|||+.++..+.+.|+++ + .|+|||+++|+. +++.+++||+++|++|+++..|+++++++.|.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~ 303 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFE 303 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHH
Confidence 9999999999999999999999986 3 489999999996 78999999999999999999999999877653
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-38 Score=360.03 Aligned_cols=206 Identities=24% Similarity=0.361 Sum_probs=175.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
++++++|+++.|++ .+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~ 571 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------K 571 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------c
Confidence 57999999999963 24699999999999999999999999999999999999999999999865 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHh-h-hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYG-R-LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~-~-l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++||+||++ .+.+++.++..+.. . ..+. .++++.++++.+++.+ +..++++.+|||||||||+||+|++.
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~-~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCCh-HHhcCCccccCHHHHHHHHHHHHHhc
Confidence 4699999985 34456666644322 1 1121 2356788999999962 36789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~~ 473 (568)
+|++|||||||+|||+.+++.+.+.+.+. +| |||++|||++++..+|||+++|++|+++ ..|+.++.++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 99999999999999999999999888765 34 9999999999999999999999999998 67888876543
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.7e-39 Score=388.65 Aligned_cols=216 Identities=22% Similarity=0.363 Sum_probs=188.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++. .+.+|+|+||+|++||.+||+|+||||||||+++|.|+++ ++|+|.++|.|+.. ..+.+
T Consensus 1216 g~I~f~nVs~~Y~~~----~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEA----GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred CeEEEEEEEEEeCCC----CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 369999999999742 3579999999999999999999999999999999999997 79999999999975 56778
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-----Ccccc----cCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-----GVADK----QAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----~~~~~----~~~~LSgG~kqrl 393 (568)
|++++|+||++.+|+. |++|||..+. +..++++.++++.++|.+. +-.|. ...+||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999997 9999996532 1124567888888887420 01222 2347999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|||++||.++.+.. ||||++|++|++++.|+|++|.++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999988789999999999998876 999999999999999999999753
No 341
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=336.43 Aligned_cols=224 Identities=23% Similarity=0.420 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|.. ++++|+||||++.+|+.+||+||+||||||++|+|-.+...++|.|.++|+||+. ....+
T Consensus 536 G~i~fsnvtF~Y~p-----~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDP-----GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred CeEEEEEeEEecCC-----CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 46999999999974 5789999999999999999999999999999999999999999999999999975 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHH---HHHcCCCCCCcccc----cCCCCChhHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEES---LKSVNLFHGGVADK----QAGKYSGGMKRRLSV 395 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~---l~~~~L~~~~~~~~----~~~~LSgG~kqrl~l 395 (568)
|++||++|||..||++ |+..|+++. +... +.++..+.++.+ =+.+++.+ -.+. +.-.|||||||||+|
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIrya-k~~A-sneevyaAAkAA~IHdrIl~fPe--gY~t~VGERGLkLSGGEKQRVAi 685 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYA-KPSA-SNEEVYAAAKAAQIHDRILQFPE--GYNTRVGERGLKLSGGEKQRVAI 685 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeec-CCCC-ChHHHHHHHHHhhHHHHHhcCch--hhhhhhhhcccccCCcchhhHHH
Confidence 9999999999999998 999999963 3321 222222221111 01234432 2233 344699999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
||+++.+|.+++|||.||+||....|.+...+.+...|||-|++.|.+..+-. ||.|.++++|+|++.|..+||.++-|
T Consensus 686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhccC
Confidence 99999999999999999999999999999999999899999999999999875 99999999999999999999988865
Q ss_pred CcE
Q 008362 476 GSY 478 (568)
Q Consensus 476 ~~~ 478 (568)
..|
T Consensus 765 G~Y 767 (790)
T KOG0056|consen 765 GAY 767 (790)
T ss_pred CcH
Confidence 544
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8e-38 Score=353.45 Aligned_cols=203 Identities=22% Similarity=0.249 Sum_probs=167.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~~------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~---------- 66 (635)
T PRK11147 3 LISIHGAWLSFSD------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL---------- 66 (635)
T ss_pred EEEEeeEEEEeCC------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC----------
Confidence 6999999999973 569999999999999999999999999999999999999999999998731
Q ss_pred ceEEEcCCCCCCCCCCHHHH------------------------------HHHHhhhc----CCCchhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREH------------------------------LLFYGRLK----NLKGPALTQAVEESLKSV 370 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~------------------------------l~~~~~l~----~~~~~~~~~~~~~~l~~~ 370 (568)
.+++++|.+......++.++ +..+..+. .....+.++++.++++.+
T Consensus 67 ~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 146 (635)
T PRK11147 67 IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL 146 (635)
T ss_pred EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC
Confidence 25666665432222344443 22222111 111123456788999999
Q ss_pred CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC
Q 008362 371 NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 371 ~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~ 450 (568)
|+. .++++++|||||||||+||+||+.+|++|||||||+|||+.+++.+.+.|++++ .|||++|||+++++.+|
T Consensus 147 gl~----~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~ 220 (635)
T PRK11147 147 GLD----PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMA 220 (635)
T ss_pred CCC----CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhc
Confidence 994 378999999999999999999999999999999999999999999999998874 59999999999999999
Q ss_pred CEEEEEECCEEEe-ecCHHH
Q 008362 451 DRLGIFVDGSLQC-IGNPKE 469 (568)
Q Consensus 451 dri~il~~G~l~~-~g~~~~ 469 (568)
|||++|++|+++. .|+.++
T Consensus 221 d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 221 TRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CeEEEEECCEEEEecCCHHH
Confidence 9999999999974 577654
No 343
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=297.58 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=197.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCceEEEECCeeCCC--cH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTSGTAYVQGLDIRT--DM 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~G~i~i~G~~i~~--~~ 319 (568)
.+++++||+..-.+ ++.+|++|||+|++||+.+|+||||||||||.++|+|.- ++|+|+|.++|+|+.. ..
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHh
Confidence 36899999999863 158999999999999999999999999999999999974 7899999999999965 45
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSV 395 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~l 395 (568)
+++|..|...+|.|.=+|..|+.+.|....+.+... ..+..+++++.++.+++.+ ++++|.+. .+|||+|+|..|
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-EFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCH-HHhhcccCCCcCcchHHHHHH
Confidence 678889999999999999999999999766543211 2466788999999999985 68899886 699999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+++.+|++.|||||-||||..+-+.+-+.+++++ +|++++++||+-+.++.+ .|++.+|.+|++++.|.+ ++..+
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 999999999999999999999999999999999975 699999999998887765 399999999999999999 66544
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
+
T Consensus 235 l 235 (251)
T COG0396 235 L 235 (251)
T ss_pred H
Confidence 3
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.9e-38 Score=300.78 Aligned_cols=146 Identities=27% Similarity=0.373 Sum_probs=133.5
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV 328 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~ 328 (568)
.||+|.|++ +.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|
T Consensus 4 ~~l~~~~~~------~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~ 65 (177)
T cd03222 4 PDCVKRYGV------FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVY 65 (177)
T ss_pred CCeEEEECC------EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEE
Confidence 589999973 5688884 9999999999999999999999999999999999999999853 789
Q ss_pred EcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 329 CPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 329 ~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+||+.. ||||||||+++|||++.+|++++|
T Consensus 66 ~~q~~~--------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 66 KPQYID--------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EcccCC--------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998642 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEE
Q 008362 409 DEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ 462 (568)
Q Consensus 409 DEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~ 462 (568)
||||+|||+.+++.+.+.+++. ++ ++|||++||++++++.+|||+++|+++-.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999999999999886 45 499999999999999999999999877543
No 345
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-38 Score=352.34 Aligned_cols=226 Identities=31% Similarity=0.476 Sum_probs=201.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~~G~i~i~G~~i~~~~~~ 321 (568)
.+..+|++..-.+..+ ..+++|+|||.++++||+.|++||+|||||||+++|+|-... .+|+|.+||+.. ..+.
T Consensus 25 ~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhh
Confidence 4677888877764322 357899999999999999999999999999999999998874 799999999654 3456
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC---CchhHHHHHHHHHHHcCCCCCCcccccCC-----CCChhHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL---KGPALTQAVEESLKSVNLFHGGVADKQAG-----KYSGGMKRRL 393 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-----~LSgG~kqrl 393 (568)
.++..||+.|+|.+++.+||+|++.+.+.++-. +.++.+++++++++.+||. +.+|+.++ .+||||||||
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~--~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE--KCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh--hhccceecCCCCCccccchhhHH
Confidence 788899999999999999999999999988732 4577889999999999997 47888887 5999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
++|.-|+.||++++|||||+|||..+..++.+.|+++ ++|+|||+|=|... ++-.+.|++++|.+|+.+..|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 9999999999999999999999999999999999995 56999999999985 888899999999999999999999887
Q ss_pred HhcC
Q 008362 472 ARYG 475 (568)
Q Consensus 472 ~~~~ 475 (568)
+-+.
T Consensus 260 ~ff~ 263 (613)
T KOG0061|consen 260 EFFS 263 (613)
T ss_pred HHHH
Confidence 6553
No 346
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-38 Score=382.59 Aligned_cols=209 Identities=21% Similarity=0.295 Sum_probs=182.8
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
++.+|+|+|+.+++||+++|+||||||||||+|+|+|.++|+ +|+|.++|+++.... .|+.+||++|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~--~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV--PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc--ccceeEEecccccCCCcC
Confidence 467999999999999999999999999999999999999998 999999999875321 267899999999999999
Q ss_pred CHHHHHHHHhhhcCCC----------chhH------------------------HHHHHHHHHHcCCCCCCcc-----cc
Q 008362 340 TGREHLLFYGRLKNLK----------GPAL------------------------TQAVEESLKSVNLFHGGVA-----DK 380 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~----------~~~~------------------------~~~~~~~l~~~~L~~~~~~-----~~ 380 (568)
||+|++.|.+++++.. .++. +..++++++.+||++ .+ |+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~--~~~t~vg~~ 332 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI--CKDTIVGDE 332 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc--ccCceeCCc
Confidence 9999999988766421 1110 113567899999963 33 66
Q ss_pred cCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCH-HHHHHhCCEEEEEE
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSM-EEAEALCDRLGIFV 457 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~-~e~~~l~dri~il~ 457 (568)
.++.|||||||||+||++|+++|++++|||||+|||+.++.++.+.|++. + .|+|||+++|+. +++..+||+|++|+
T Consensus 333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence 77899999999999999999999999999999999999999999999986 4 489999999996 68999999999999
Q ss_pred CCEEEeecCHHHHHHhcC
Q 008362 458 DGSLQCIGNPKELKARYG 475 (568)
Q Consensus 458 ~G~l~~~g~~~~l~~~~~ 475 (568)
+|+++..|+.+++++.|.
T Consensus 413 ~G~ivy~G~~~~~~~yF~ 430 (1470)
T PLN03140 413 EGQIVYQGPRDHILEFFE 430 (1470)
T ss_pred CceEEEeCCHHHHHHHHH
Confidence 999999999999987653
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2e-38 Score=353.66 Aligned_cols=193 Identities=23% Similarity=0.345 Sum_probs=164.8
Q ss_pred eEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE-----------ECCeeCCCc
Q 008362 250 NLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY-----------VQGLDIRTD 318 (568)
Q Consensus 250 ~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~-----------i~G~~i~~~ 318 (568)
+++++||+ +..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|. ++|+++...
T Consensus 78 ~~~~~yg~-----~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV-----NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC-----CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 37889974 346999999 9999999999999999999999999999999999997 899887543
Q ss_pred HHHh---hcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 319 MDRI---YTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 319 ~~~~---r~~ig~~~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
..+. +..+++.+|.....+. .||+|++... +..++++++++.++|. ...++++++||||||||
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLE--NILDRDISELSGGELQR 220 (590)
T ss_pred HHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCc--hhhcCChhhCCHHHHHH
Confidence 2222 2346776775444333 2999998742 2345788999999996 37899999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
++||+||+.+|+++||||||++||+.+++.+++.|+++.+|+|||++||++++++.+|||+.+|.++
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999998644999999999999999999999999863
No 348
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.9e-38 Score=354.31 Aligned_cols=193 Identities=20% Similarity=0.330 Sum_probs=165.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++ |
T Consensus 450 ~~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------K 514 (659)
T ss_pred CeEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------C
Confidence 46999999999963 24699999999999999999999999999999999999999999998763 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC-chhHHHHHHHHHHHcCCCCCCccccc---------CCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLK-GPALTQAVEESLKSVNLFHGGVADKQ---------AGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~~LSgG~kqrl 393 (568)
+++||+||++.+++. |++||+.+.....+.. ....++++.++++.+++.+ ..+++ .++||||||||+
T Consensus 515 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~--~~~~~~g~~~~~~~~~~LSgGqkQRl 591 (659)
T TIGR00954 515 GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH--ILEREGGWSAVQDWMDVLSGGEKQRI 591 (659)
T ss_pred CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH--HHhhcCCcccccccccCCCHHHHHHH
Confidence 679999999999987 9999998754322211 1112456788899999863 44443 379999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
+||||++.+|+++||||||+|||+.+++.+.+.+++. |+|+|++||+++++ ..|||+++|+
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 9999999999999999999999999999999998763 89999999999987 5699999996
No 349
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=325.95 Aligned_cols=226 Identities=27% Similarity=0.482 Sum_probs=186.6
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMD 320 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~ 320 (568)
....+.+++++..=++. ++++|+|+||++.+||.+||+||+|||||||.|+|.|..+|++|.|++||.|++. +.+
T Consensus 331 P~g~L~Ve~l~~~PPg~----~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e 406 (580)
T COG4618 331 PQGALSVERLTAAPPGQ----KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406 (580)
T ss_pred CCceeeEeeeeecCCCC----CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHH
Confidence 34579999999866542 4789999999999999999999999999999999999999999999999999965 677
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHH-----HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALT-----QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~-----~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
..-++|||.||+-.||+. |+.||+.=+.. ..+.+++- ..+++++-.+--..+.....-...||||||||+++
T Consensus 407 ~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL 483 (580)
T COG4618 407 QLGRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL 483 (580)
T ss_pred HhccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH
Confidence 788999999999999998 99999964421 11111111 12344443332211122233445799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
||||-++|.+++||||-|+||....+.+.+.|...| +|.|+|++||...... .+|+|.+|++|++...|+.+|+.++.
T Consensus 484 ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999999999999999875 7999999999998775 59999999999999999999988765
Q ss_pred C
Q 008362 475 G 475 (568)
Q Consensus 475 ~ 475 (568)
.
T Consensus 563 ~ 563 (580)
T COG4618 563 L 563 (580)
T ss_pred c
Confidence 4
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-37 Score=289.48 Aligned_cols=154 Identities=38% Similarity=0.709 Sum_probs=142.8
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcce
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSM 326 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~i 326 (568)
++|+++.|++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~------~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG------RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeCC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 6899999963 469999999999999999999999999999999999999999999999998754 244567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 327 g~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
+|+|| ||||||||+++|+|++.+|+++
T Consensus 76 ~~~~q-----------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 76 GYVPQ-----------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred EEEee-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 99999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
+|||||+|||+.++..+++.+++.+ +++|++++||++++++.+||++++|++|+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999864 47999999999999999999999999875
No 351
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-37 Score=284.56 Aligned_cols=225 Identities=26% Similarity=0.413 Sum_probs=185.2
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-----CCC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-----IRT 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-----i~~ 317 (568)
.+.+++++|+|.|++ ....+||||++++||+.||+|.+|||||||++||+|-+.|++|+|.+.-.+ +..
T Consensus 4 ~PLL~V~~lsk~Yg~------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGP------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCC------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 357999999999985 357999999999999999999999999999999999999999999886532 211
Q ss_pred cHH-----HhhcceEEEcCCCC--CCCCCC----HHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCC
Q 008362 318 DMD-----RIYTSMGVCPQEDL--LWETLT----GREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKY 385 (568)
Q Consensus 318 ~~~-----~~r~~ig~~~Q~~~--l~~~lT----v~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~L 385 (568)
..+ -.|..=|++.|+|. |-...+ +.|-+.- ..+-+ .++++...++|+++++.. +..|..+.++
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~-~RiDD~PrtF 152 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDL-DRIDDLPRTF 152 (258)
T ss_pred hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCc-ccccCccccc
Confidence 111 12445699999863 333333 3333322 22322 356778889999999985 6789999999
Q ss_pred ChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 386 SGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 386 SgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
|||||||+.|||-|+..|+++++||||.|||...+.++.++++.+ .+ |.+++++|||+..+.-++||..+|.+|++++
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999999999999999999999999986 34 8999999999999999999999999999999
Q ss_pred ecCHHHHHHhcCCcE
Q 008362 464 IGNPKELKARYGGSY 478 (568)
Q Consensus 464 ~g~~~~l~~~~~~~~ 478 (568)
.|-.+.+.......|
T Consensus 233 ~GLTDrvLDDP~hPY 247 (258)
T COG4107 233 SGLTDRVLDDPHHPY 247 (258)
T ss_pred cccccccccCCCCch
Confidence 998887766554444
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1e-36 Score=289.96 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=136.1
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+++|++|+||++++||+++|+||||||||||+|++. +++|++.++|..... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc----ccccEEEEhH-----------
Confidence 467999999999999999999999999999999985 479999998863211 1345888887
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~--p~lllLDEPtsgLD~~~r 420 (568)
.++++.++|.. ...++++.+||||||||+++|+|++.+ |+++||||||+|||+.++
T Consensus 68 ---------------------~~~l~~~~L~~-~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~ 125 (176)
T cd03238 68 ---------------------LQFLIDVGLGY-LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDI 125 (176)
T ss_pred ---------------------HHHHHHcCCCc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHH
Confidence 24678888862 237899999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 421 NNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 421 ~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
+.+.+.+++.. +|+|||++||++++++ .|||+++|.+|+-
T Consensus 126 ~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 126 NQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 99999999864 6999999999999985 7999999977543
No 353
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-36 Score=366.19 Aligned_cols=208 Identities=22% Similarity=0.385 Sum_probs=173.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.++++|+++.|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~----~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------ 699 (1522)
T TIGR00957 636 SITVHNATFTWARD----LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699 (1522)
T ss_pred cEEEEEeEEEcCCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------
Confidence 69999999999742 35699999999999999999999999999999999999999999999987
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHH--HHHHHcCCCC---CCcccccCCCCChhHHHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVE--ESLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~--~~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
++|||||++.+++ .|++||+.++... ..++.++.++ .+.+.++..+ +...+++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999886 5999999985321 1122111111 1122222211 1235677889999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR---AKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~---~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
..+|++++|||||++||+..++.+++.+.+ ..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHhc
Confidence 999999999999999999999999999864 3468999999999999876 999999999999999999998754
No 354
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=282.09 Aligned_cols=191 Identities=29% Similarity=0.413 Sum_probs=170.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++.+||+-.-+ +...+.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|+++|..+...++..++
T Consensus 2 ~L~a~~L~~~R~------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLSCERG------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhhhccC------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 355677776655 46799999999999999999999999999999999999999999999999999887777778
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.+-|+--.+.+-+.||++|||.|+.++.+-. ....+.++++.+||. +..|.++++||.|||||++|||-.+..++
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~--g~~dlp~~~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLA--GLEDLPVGQLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcc--cccccchhhcchhHHHHHHHHHHHcCCCC
Confidence 8888888899999999999999999987741 235688899999997 58999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-hcCCceEEEEcCCHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKR-AKQGRAIILTTHSMEEA 446 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~-~~~g~tiil~tH~~~e~ 446 (568)
+.|||||+++||+.++..+-.++.. ..+|--||++||..--+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 9999999999999999999999987 46789999999985443
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.8e-36 Score=343.84 Aligned_cols=217 Identities=20% Similarity=0.253 Sum_probs=168.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC---CCCceEEEECCeeCCC--
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYVQGLDIRT-- 317 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~---~p~~G~i~i~G~~i~~-- 317 (568)
..+|+++|++|.|++ +.+|+|+||+|.+||++||+||||||||||+|+|+|.. .|++|+|.+.++++..
T Consensus 175 ~~~I~i~nls~~y~~------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~ 248 (718)
T PLN03073 175 IKDIHMENFSISVGG------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDD 248 (718)
T ss_pred ceeEEEceEEEEeCC------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCC
Confidence 346999999999973 46999999999999999999999999999999999964 6889999865544211
Q ss_pred --c--------H---HHhhcceEEEcCCCCCCCCCCHHHH-----------------HH-HHhhhcCCCchhHHHHHHHH
Q 008362 318 --D--------M---DRIYTSMGVCPQEDLLWETLTGREH-----------------LL-FYGRLKNLKGPALTQAVEES 366 (568)
Q Consensus 318 --~--------~---~~~r~~ig~~~Q~~~l~~~lTv~e~-----------------l~-~~~~l~~~~~~~~~~~~~~~ 366 (568)
. . ...++.+++++|++.+... ++.++ +. ...++........+.++.++
T Consensus 249 ~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~ 327 (718)
T PLN03073 249 TTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASI 327 (718)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 0 0 1123447888876443221 11111 11 01111111122445678888
Q ss_pred HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 008362 367 LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 367 l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~ 446 (568)
++.+|+.+ +..++++.+||||||||++||+||+.+|+++||||||++||+.+++.+.+.|++. +.|||++|||++++
T Consensus 328 L~~lgl~~-~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l 404 (718)
T PLN03073 328 LAGLSFTP-EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFL 404 (718)
T ss_pred HHHCCCCh-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 99999863 3578999999999999999999999999999999999999999999999999876 68999999999999
Q ss_pred HHhCCEEEEEECCEEE-eecCHHH
Q 008362 447 EALCDRLGIFVDGSLQ-CIGNPKE 469 (568)
Q Consensus 447 ~~l~dri~il~~G~l~-~~g~~~~ 469 (568)
..+|||+++|++|++. ..|+.++
T Consensus 405 ~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 405 NTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred HHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999999999996 5676543
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.5e-36 Score=364.10 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++|+++.|+++. ++++|+|+||+|++||.++|+||+|||||||+++|.|+++|++|.+. .+|+
T Consensus 614 ~I~~~~vsF~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~ 679 (1495)
T PLN03232 614 AISIKNGYFSWDSKT---SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRG 679 (1495)
T ss_pred cEEEEeeEEEcCCCC---CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecC
Confidence 599999999997421 35799999999999999999999999999999999999999998763 2467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
+|+||||++.+|+. |++||+.|+.. . .+++.+++++.++|.+ +.....+..+||||||||++|
T Consensus 680 ~Iayv~Q~p~Lf~g-TIreNI~fg~~---~----~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 680 SVAYVPQVSWIFNA-TVRENILFGSD---F----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred cEEEEcCccccccc-cHHHHhhcCCc---c----CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 89999999999986 99999998632 1 1345666666666531 112334456799999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||+..+|+++|||||||+||+...+++.+. ++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHhc
Confidence 9999999999999999999999999988765 555567999999999998875 5999999999999999999998754
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.5e-36 Score=362.58 Aligned_cols=193 Identities=21% Similarity=0.358 Sum_probs=161.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +++||||++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999988 38999999999986 9999
Q ss_pred HHHHHhhhcCCCchhHHHH-----HHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQA-----VEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|+.|+... ..+..++. +++.++.+...+......+..+||||||||++||||++.+|+++||||||+|||+.
T Consensus 506 NI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 506 NIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99985322 11111111 12223333221112345678899999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
.++.+++. +.+..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 583 ~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 583 TEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999985 5666679999999999999875 999999999999999999998753
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.9e-36 Score=363.40 Aligned_cols=205 Identities=24% Similarity=0.395 Sum_probs=174.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r 323 (568)
.|+++|+++.|+.+. ++++|+|+||++++||.++|+||+|||||||+++|.|.++|++ |+|.+ |
T Consensus 614 ~I~~~nvsf~y~~~~---~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~ 678 (1622)
T PLN03130 614 AISIKNGYFSWDSKA---ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------R 678 (1622)
T ss_pred ceEEEeeEEEccCCC---CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------c
Confidence 599999999997421 3569999999999999999999999999999999999999999 89974 4
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++|+||||++.+++. |++||+.|+... .+++.+++++.++|.+ +.....+..+||||||||++
T Consensus 679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~-------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFNA-TVRDNILFGSPF-------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred CeEEEEcCccccCCC-CHHHHHhCCCcc-------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 579999999999986 999999986321 2345666777666532 11233455679999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWN-VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~-~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||+..+|+++|||||||+||+...+++.+ +++...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++.++
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999888765 5665667999999999998876 5999999999999999999998754
No 359
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=323.00 Aligned_cols=201 Identities=27% Similarity=0.373 Sum_probs=173.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++|+++.|+ .+..++|+||++.+|+++||+|+||||||||||+|+|...|++|+|...+.
T Consensus 2 ~~i~~~~ls~~~g------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---------- 65 (530)
T COG0488 2 SMITLENLSLAYG------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---------- 65 (530)
T ss_pred ceEEEeeeEEeeC------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------
Confidence 3699999999997 368999999999999999999999999999999999999999999987642
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhh-hcC-----------------------------CCchhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGR-LKN-----------------------------LKGPALTQAVEESLKSVNLF 373 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~-----------------------------~~~~~~~~~~~~~l~~~~L~ 373 (568)
-++||++|++.+.+..||.+.+.-... +.. ...-+.+.++..++..+|+.
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 248999999999999999997764321 000 00112245677888889987
Q ss_pred CCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE
Q 008362 374 HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 374 ~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri 453 (568)
+ . ++++++||||||+|++||+||..+|++|+|||||++||..+...+-+.|++.+ | |+|++|||-+..+.+|++|
T Consensus 146 ~--~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 146 D--E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred c--c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhhe
Confidence 4 3 99999999999999999999999999999999999999999999999998654 4 9999999999999999999
Q ss_pred EEEECCEEEeec
Q 008362 454 GIFVDGSLQCIG 465 (568)
Q Consensus 454 ~il~~G~l~~~g 465 (568)
+-+++|++...+
T Consensus 221 ~~ld~g~l~~y~ 232 (530)
T COG0488 221 LELDRGKLTPYK 232 (530)
T ss_pred EEecCCceeEec
Confidence 999999887654
No 360
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.6e-34 Score=330.01 Aligned_cols=220 Identities=25% Similarity=0.379 Sum_probs=188.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECCeeCCCcHHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G~~i~~~~~~ 321 (568)
+....+|+.+.-..++ .+++.|+|||=-+.||-.+||+|+|||||||||++|+|=.. -.+|+|.|+|.+... +.
T Consensus 786 ~V~~w~dl~~~~~~qG--~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~t 861 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG--GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ET 861 (1391)
T ss_pred ceEEEEeCCccccccc--cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hh
Confidence 3455677766554322 35789999999999999999999999999999999999643 357999999998653 45
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC---CCchhHHHHHHHHHHHcCCCCCCcccccCCC----CChhHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN---LKGPALTQAVEESLKSVNLFHGGVADKQAGK----YSGGMKRRLS 394 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~----LSgG~kqrl~ 394 (568)
.+|.+|||-|+|...+.+||+|-|.|.+.+|. ++.++..+.++++++.++|+ +++|.-++. ||.+|||||.
T Consensus 862 F~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~--~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 862 FARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK--EYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch--hhhhhhccCCCCCCCHHHhceee
Confidence 67889999999998899999999999998873 34455567899999999997 488888887 9999999999
Q ss_pred HHHHHcCCC-CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH-HHHHhCCEEEEEEC-CEEEeecCHHH
Q 008362 395 VAISLIGNP-KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME-EAEALCDRLGIFVD-GSLQCIGNPKE 469 (568)
Q Consensus 395 la~Al~~~p-~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~-e~~~l~dri~il~~-G~l~~~g~~~~ 469 (568)
||.-|+.+| .||+|||||||||..+.-.+.+.++++ +.|+||+.|-|... ++-+..||+++|++ |+.+..|++.+
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999 999999999999999999999999996 67999999999986 55556899999985 69999999754
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=263.85 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=173.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~ 321 (568)
++.++|++.+-++ .-.|-|+|++|.+|||+.|+||+|||||||+.-+.|.+.+. +|++.++++++..- ..
T Consensus 2 ~l~l~nvsl~l~g------~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l-Pa 74 (213)
T COG4136 2 MLCLKNVSLRLPG------SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML-PA 74 (213)
T ss_pred ceeeeeeeecCCC------ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc-ch
Confidence 4778999987764 46899999999999999999999999999999999998875 89999999998653 34
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHH--hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFY--GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~--~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
.++++|+.+|++.|||.++|.+|+.|. ..+|| +..++.++.+|++.||. +..++.+.+||||||-|+++-|+|
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG---~aRr~~a~aAL~~~gL~--g~f~~dP~tlSGGQrARvaL~R~L 149 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPATLKG---NARRNAANAALERSGLD--GAFHQDPATLSGGQRARVALLRAL 149 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCccccc---HHHHhhHHHHHHHhccc--hhhhcChhhcCcchHHHHHHHHHH
Confidence 578999999999999999999999874 34444 45567788999999997 588999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+..|+.++||||+|.||..-|.++.+..-. .+ .|...+++|||.+.+. ...||+-|
T Consensus 150 la~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 150 LAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred HhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 999999999999999999999999998754 54 5999999999999988 35565544
No 362
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-35 Score=268.88 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=187.4
Q ss_pred CeEEEEeEEEEcCCCCC-CCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee----CCC-
Q 008362 244 HAIISDNLRKIYPGRDG-NPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD----IRT- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~-~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~----i~~- 317 (568)
..+.++|++|+|--+.. .-.-++++|+||+++.|||++|=||+||||||++|+|-|.+.|++|+|.+.-.. +..
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 35889999999953321 124579999999999999999999999999999999999999999999996432 211
Q ss_pred cH---HHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 318 DM---DRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 318 ~~---~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
.+ -++ |+.|||+.|+-...|..+..|-+.-...-+|.+.+..+.++..+|.++++.+ ..++-.+.++|||+|||+
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlpe-rLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE-RLWSLAPATFSGGEQQRV 161 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCH-HHhcCCCcccCCchheeh
Confidence 11 223 4579999999888899999998888887889999999999999999999985 688999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
.|||.++.|=++++|||||+.||..+|+.+.++|++.| +|.+++=+-||-+.=+..|||+..|..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999875 699999999999988999999988754
No 363
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-35 Score=301.54 Aligned_cols=216 Identities=23% Similarity=0.440 Sum_probs=185.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.+...|+++.|.+ ++++|+++||+++.|+.++++|++|+||||++++|-.++.+++|.|.++|+|++. ..+.+|
T Consensus 262 ~v~F~~V~F~y~~-----~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 262 AVAFINVSFAYDP-----RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred eEEEEEEEeeccc-----cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHH
Confidence 5889999999975 5789999999999999999999999999999999999999999999999999975 446689
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccccCC----CCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADKQAG----KYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~~----~LSgG~kqrl~ 394 (568)
+.||.+||+..||.+ |...|+.+...- .+ .+++..+.+...+.+ .+-.+..++ .|||||||||+
T Consensus 337 ~aIg~VPQDtvLFND-ti~yni~ygr~~--at----~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 337 RAIGIVPQDTVLFND-TIAYNIKYGRPD--AT----AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred HHhCcCcccceehhh-hHHHHHhccCcc--cc----HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 999999999999998 999999874211 11 223333333333210 012334444 69999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||+++.+|++++|||.||+||....+++...|++..+|+|-+++.|.+..+.. ||.|++|++|++++.|+.++|.++
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999876 999999999999999999999887
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.4e-34 Score=284.12 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=140.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceEEEEC-C------ee---CCC-cHHHhh-cceEEE
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQ-G------LD---IRT-DMDRIY-TSMGVC 329 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~~G~i~i~-G------~~---i~~-~~~~~r-~~ig~~ 329 (568)
+..+|+|+||+|++||++||+||||||||||+ ..+.+ +|++.+. + .. +.. +..+.+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44431 3332211 0 00 100 111111 234455
Q ss_pred cCCCC--CCCCCCHH---HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC-
Q 008362 330 PQEDL--LWETLTGR---EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP- 403 (568)
Q Consensus 330 ~Q~~~--l~~~lTv~---e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p- 403 (568)
+|++. +.+..++. |...+...+. ......++ .+.++.+++.+ ...++++.+||||||||+++|+||+.+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~ 157 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLT 157 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence 55543 33444544 3333322221 12222333 56899999963 2579999999999999999999999998
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeec
Q 008362 404 -KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIG 465 (568)
Q Consensus 404 -~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g 465 (568)
+++||||||+|||+.+++.+.+.++++ ++|.|||++||++++++ +|||+++| ++|+++++|
T Consensus 158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEecC
Confidence 599999999999999999999999986 46999999999999985 89999999 999999876
No 365
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-34 Score=335.55 Aligned_cols=221 Identities=21% Similarity=0.389 Sum_probs=193.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
...|+++|++.+|... -..+|+||||+|++||-+||+|+.|||||||+++|-++..|++|+|.|||.|+.+ ...+
T Consensus 1136 ~G~I~f~~~~~RYrp~----lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPN----LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred CCeEEEEEeEEEeCCC----CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence 3469999999999753 3579999999999999999999999999999999999999999999999999976 7789
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC-----CCcccc----cCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH-----GGVADK----QAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~----~~~~LSgG~kqr 392 (568)
+|++++++||+|.||.+ |+|.||.=+... .++++-++||+++|.+ ....|. -..++|-||||.
T Consensus 1212 LRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQL 1283 (1381)
T ss_pred HHhcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHH
Confidence 99999999999999998 999999754322 2456677777776632 011233 335799999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+|+||||+.++||++|||+||++|+++-..+.+.|++.=+++|||.+-|.++.+.. ||||+||++|++++.|+|++|.+
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999999999999999987789999999999999987 99999999999999999999987
Q ss_pred hcCC
Q 008362 473 RYGG 476 (568)
Q Consensus 473 ~~~~ 476 (568)
+.+.
T Consensus 1363 ~~~S 1366 (1381)
T KOG0054|consen 1363 DKDS 1366 (1381)
T ss_pred CCcc
Confidence 6443
No 366
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.1e-34 Score=346.81 Aligned_cols=190 Identities=24% Similarity=0.405 Sum_probs=159.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+. ++||||||++.+++ .|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcHHH
Confidence 569999999999999999999999999999999999999999999753 46999999999886 59999
Q ss_pred HHHHHhhhcCCCchhHHH-----HHHHHHHHc--CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 344 HLLFYGRLKNLKGPALTQ-----AVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
|+.++... ..+...+ .+++.++.+ |+. ...+++..+||||||||++||||++.+|+++||||||++||
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~--t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD 814 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLE--TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccch--HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCC
Confidence 99985321 1111111 223344444 553 35678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 417 PASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 417 ~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+..++.+++. +....+|+|+|++||+++.+. .||||++|++|++.+.|+.+++.+
T Consensus 815 ~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 815 AHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 9999988874 344446899999999999986 599999999999999999999864
No 367
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=292.50 Aligned_cols=213 Identities=22% Similarity=0.404 Sum_probs=187.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--CcHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--TDMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~~~~ 320 (568)
.+.++++|++.. ..++|+||++++|||+||-|-=|||+|-+++.|.|..++++|+|.++|+++. +..+
T Consensus 261 ~~~l~v~~l~~~----------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 261 EPVLEVRNLSGG----------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred CcEEEEecCCCC----------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 346778888642 2589999999999999999999999999999999999999999999999874 3456
Q ss_pred HhhcceEEEcCC---CCCCCCCCHHHHHHHHhhhcC------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH
Q 008362 321 RIYTSMGVCPQE---DLLWETLTGREHLLFYGRLKN------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR 391 (568)
Q Consensus 321 ~~r~~ig~~~Q~---~~l~~~lTv~e~l~~~~~l~~------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq 391 (568)
.++..|+|||.+ ..++..+++.+|+.+. .++. ++.+..++.++++.+.+++.. .-.+.++++||||+||
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~-~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~-~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRRGLIDRRKERALAERYIRRLRIKT-PSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehH-hhhhhccccccChHHHHHHHHHHHHhcCccc-CCccchhhcCCchhhh
Confidence 788899999986 5789999999999886 2322 344556677889999999864 4568999999999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
|+.|||.|..+|++|||||||.|+|..++.++.++|+++ ++|++||++|-+|+|+..+||||++|++|+++..-+.
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999999999999986 6899999999999999999999999999999875443
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=298.15 Aligned_cols=205 Identities=25% Similarity=0.323 Sum_probs=178.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ .+.+++++||.|.+|+.+||+||||+|||||+|+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--------- 384 (530)
T ss_pred CeeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc---------
Confidence 467999999999974 267999999999999999999999999999999999999999999986531
Q ss_pred hcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 323 YTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 323 r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
-++||.+|+. .+.++.|+.|++.-... ...+..+...|..+++.. +...++++.||||||.||.+|+.++.
T Consensus 385 -v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~-~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 385 -VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred -eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCCh-HHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 3589999986 45578899999875421 111578899999999985 67799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee-cCHHHHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNPKELKA 472 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~-g~~~~l~~ 472 (568)
+|.+|||||||+.||..++..+-+.|.... -|||++|||-+.++.+|++++.+.+ ++... |+.++..+
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999999999999999999988764 5999999999999999999999998 66555 77766554
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=5.9e-33 Score=252.99 Aligned_cols=132 Identities=35% Similarity=0.652 Sum_probs=118.5
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
|+|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.. .....++.++|++|++.+++.+|++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999976 455678899999999999999999999
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccC----CCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQA----GKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
...++++++++.+++.+ ..++.+ .+||||||||++||+|++.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLED--LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGG--GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------ccccccccccccccccc--ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456788888888752 344444 9999999999999999999999999999996
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.7e-32 Score=272.84 Aligned_cols=196 Identities=20% Similarity=0.278 Sum_probs=157.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh--------CC--CCCCc-----------eEEEECCeeCCCc----
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI--------GI--TRTTS-----------GTAYVQGLDIRTD---- 318 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~--------Gl--~~p~~-----------G~i~i~G~~i~~~---- 318 (568)
...|+|+|++|+.|+.+++.|++|||||||++.+. +. ..|.. --|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 11 11221 1467777666321
Q ss_pred H-------HHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 008362 319 M-------DRIYT----------------SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375 (568)
Q Consensus 319 ~-------~~~r~----------------~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~ 375 (568)
+ +.+|+ .++|..++...+..||+.|++.|+..+++ .+++.++++.+||.+
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~- 160 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGY- 160 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCch-
Confidence 1 12222 24555566556678999999999876642 245678999999962
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~d 451 (568)
...++++.+||||||||++||+||+.+ |++++|||||+|||+..++.+++.++++. +|.|||++||++++++ .||
T Consensus 161 l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD 239 (261)
T cd03271 161 IKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CAD 239 (261)
T ss_pred hhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence 247899999999999999999999996 79999999999999999999999999864 6999999999999986 699
Q ss_pred EEEEE------ECCEEEeecCH
Q 008362 452 RLGIF------VDGSLQCIGNP 467 (568)
Q Consensus 452 ri~il------~~G~l~~~g~~ 467 (568)
+++.| ++|++++.|++
T Consensus 240 ~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 240 WIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEEEecCCcCCCCCEEEEeCCC
Confidence 99999 89999999974
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.98 E-value=1.5e-32 Score=266.55 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=137.6
Q ss_pred ee-eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---------eEEEECCeeCCCcHHHhhcceEEEcCCCCC
Q 008362 266 AV-NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---------GTAYVQGLDIRTDMDRIYTSMGVCPQEDLL 335 (568)
Q Consensus 266 al-~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---------G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l 335 (568)
-+ +++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++++|++||++..
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~ 87 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDG 87 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCC
Confidence 35 6789999999 999999999999999999999987653 4677778776432 235789999999876
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCC
Q 008362 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEP 411 (568)
Q Consensus 336 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEP 411 (568)
+ + +.. ..++++++++. . +..++++.+||||||||+++|+|++ .+|++++||||
T Consensus 88 ~----------~-----~~~---~~~~~~~~l~~---~--~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 88 R----------Y-----SII---SQGDVSEIIEA---P--GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred c----------e-----eEE---ehhhHHHHHhC---C--CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 6 1 110 12456677776 2 3678999999999999999999987 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 412 STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
|+|||+.+++.+++.|+++.++.|||++||++++++ .|||++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999999876899999999999875 7999998864
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.4e-31 Score=312.71 Aligned_cols=208 Identities=22% Similarity=0.379 Sum_probs=179.7
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
....++++|.++...+. ...+.|+||||+|++|+.+|++|+-|||||+|+.+|.|..+..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~---~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSE---SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCC---CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 34579999999998752 1345999999999999999999999999999999999999999999999984
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHH
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqr 392 (568)
++||||.+.+++. |++||+.|+..+ .+++.++.++.+.|.+ ......+.-+||||||||
T Consensus 584 ----iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR 651 (1381)
T KOG0054|consen 584 ----VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR 651 (1381)
T ss_pred ----EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH
Confidence 8999999999987 999999986433 2456666777776642 123455666899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV-VKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~-l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+++|||+-.++++++||.|.|++|....+.+.+- |+..-++||+|++||.++.... ||.|++|++|++...|+.+|+.
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEecccCHHHHH
Confidence 9999999999999999999999999998888775 5456789999999999988875 9999999999999999999998
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
+.
T Consensus 731 ~~ 732 (1381)
T KOG0054|consen 731 KS 732 (1381)
T ss_pred hc
Confidence 54
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=3.8e-33 Score=273.76 Aligned_cols=185 Identities=19% Similarity=0.240 Sum_probs=149.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY- 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r- 323 (568)
.|+++|.. .|++ +.+++++++ +++||+|||||||||++++|+ +++|.+.. ..|
T Consensus 5 ~l~l~nfk-~~~~------~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG------EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQ 58 (212)
T ss_pred EEEEECcc-cCCC------CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----Hhhh
Confidence 37778876 7763 569999987 899999999999999999997 44555432 223
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhh--------cCCCchhHHH--HHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRL--------KNLKGPALTQ--AVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--------~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
+++|+++|+..+++.+|+.|++.++... +|...++... ...++++.++|. +..++++.+||+|||||+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~--~~~~~~~~~lS~G~~~r~ 136 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP--KKSWKNISNLSGGEKTLS 136 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc--cccccchhhcCHHHHHHH
Confidence 5799999999999999999998887654 3332221111 125666778886 467889999999999999
Q ss_pred HHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 394 SVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 394 ~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++|+|++. +|++++|||||+||||.+++.+++.+++.+++.|+|++||+ +++..+|||+++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~-~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR-NNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc-HHHHHhCCEEEEEEe
Confidence 99999963 58999999999999999999999999998778899999999 567789999999974
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1e-31 Score=268.86 Aligned_cols=196 Identities=19% Similarity=0.254 Sum_probs=145.2
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------CCCCCCce---
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------GITRTTSG--- 306 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------Gl~~p~~G--- 306 (568)
|+++|- |.|+ ++.++++++ |++++|+||||||||||+++|+ +++.+++|
T Consensus 4 i~~~nf-ksy~------~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~ 71 (243)
T cd03272 4 VIIQGF-KSYK------DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV 71 (243)
T ss_pred EEEeCc-cCcc------cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC
Confidence 445554 3464 356888886 8999999999999999999998 55666666
Q ss_pred -----EEEECCeeC----CCcHHHhhcceEEEcCCCCCCC-CCCHHHHHHHHhhhcCCCchhHH--HHHHHHHHHcCCCC
Q 008362 307 -----TAYVQGLDI----RTDMDRIYTSMGVCPQEDLLWE-TLTGREHLLFYGRLKNLKGPALT--QAVEESLKSVNLFH 374 (568)
Q Consensus 307 -----~i~i~G~~i----~~~~~~~r~~ig~~~Q~~~l~~-~lTv~e~l~~~~~l~~~~~~~~~--~~~~~~l~~~~L~~ 374 (568)
++.+++.+- ......+++.+|++||+..+++ ..|..|...+.... ++...... ....+..+.+++.
T Consensus 72 ~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~- 149 (243)
T cd03272 72 MSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMK- 149 (243)
T ss_pred ceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhcc-
Confidence 666666321 1222346778999999988887 46877766655443 54332100 0011233334554
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC
Q 008362 375 GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 375 ~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~ 450 (568)
+..++++.+||||||||++||+|++ .+|+++++||||+||||.+++.+++.+++..++++||++||+. ++..+|
T Consensus 150 -~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~-~~~~~~ 227 (243)
T cd03272 150 -QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP-ELLEVA 227 (243)
T ss_pred -ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHhhC
Confidence 3578899999999999999999996 3689999999999999999999999999876688888888885 577899
Q ss_pred CEEEEEE
Q 008362 451 DRLGIFV 457 (568)
Q Consensus 451 dri~il~ 457 (568)
||+++|.
T Consensus 228 d~i~~l~ 234 (243)
T cd03272 228 DKFYGVK 234 (243)
T ss_pred CEEEEEE
Confidence 9999886
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.97 E-value=1.4e-30 Score=262.20 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=142.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCe-eCCCc--H-HHhhcceEEEcCCC---------CCCCCCCHH
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGL-DIRTD--M-DRIYTSMGVCPQED---------LLWETLTGR 342 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~-~i~~~--~-~~~r~~ig~~~Q~~---------~l~~~lTv~ 342 (568)
..+++|+||||||||||+++|+|++.|+ .|+++..|. ++... . ...+.++++++|++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999887 468888776 43211 1 11235799999985 356678999
Q ss_pred HHHHHHhhhcC-C-CchhHHHHHHHHHHHcCCCCC------------------CcccccCCCCChhHHHHHHHHHHHc--
Q 008362 343 EHLLFYGRLKN-L-KGPALTQAVEESLKSVNLFHG------------------GVADKQAGKYSGGMKRRLSVAISLI-- 400 (568)
Q Consensus 343 e~l~~~~~l~~-~-~~~~~~~~~~~~l~~~~L~~~------------------~~~~~~~~~LSgG~kqrl~la~Al~-- 400 (568)
+++......+. . ..+...+++.++|+.+++..+ +..++++.+||||||||+++|+|++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88865432211 1 123345788999999998521 2456889999999999999999998
Q ss_pred --CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 401 --GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 401 --~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.+|+++++||||+|||+..++.+++.|++..+|.+||++||+ .++...|||++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC-HHHHHhCCEEEEEE
Confidence 578999999999999999999999999988779999999999 55566799997654
No 376
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=5.4e-29 Score=261.27 Aligned_cols=221 Identities=22% Similarity=0.374 Sum_probs=193.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC-C--CcH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI-R--TDM 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i-~--~~~ 319 (568)
...++++||+..=.. ...++++|||+|.+|||+||.|-.|-|.+.|+.+|+|+.+|.+|+|.++|+|+ . +..
T Consensus 255 ~~vL~V~~L~v~~~~-----~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRR-----GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCC-----CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 568999999987542 25799999999999999999999999999999999999999999999999997 2 233
Q ss_pred HHhhcceEEEcCCC---CCCCCCCHHHHHHHHhhhc------C-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 320 DRIYTSMGVCPQED---LLWETLTGREHLLFYGRLK------N-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~---~l~~~lTv~e~l~~~~~l~------~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
+..+..+||+|++. .+-+++|+.||+.+...-+ + +...+.++...+++++++.-. .-...++++||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 44456899999975 6888999999998854321 2 455778888999999999863 34677899999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
+||+-+||-|..+|++|++.+||-|||..+.+.+.+.|.+. ++|++|+++|-++||+..+||||++|.+|+++...+++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 99999999999999999999999999999999999999886 56999999999999999999999999999999888776
Q ss_pred H
Q 008362 469 E 469 (568)
Q Consensus 469 ~ 469 (568)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=2.7e-30 Score=253.97 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=140.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEe-CCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECC-eeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALP-SGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQG-LDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~-~Gei~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G-~~i~~~~~~ 321 (568)
.|+++|.. .|.+ -++++|+.. +|++++|+|||||||||++++|++ +.-+..+....+. .+.. ....
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGE 73 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCC
Confidence 47888888 6642 156667654 589999999999999999999996 4444445444331 0110 1122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+..+++.+|++.. ..++.++. +.+.++..+.+ .++..++. ++.++++.+||||||||+++|+|++.
T Consensus 74 ~~~~v~~~f~~~~~--~~~~~r~~-------gl~~~~~~~~~--~l~~g~l~--~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 74 DTAEVSFTFQLGGK--KYRVERSR-------GLDYDQFTRIV--LLPQGEFD--RFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred ccEEEEEEEEECCe--EEEEEEec-------CCCHHHHHHhh--hhhhcchH--HHhcCCccccCHHHHHHHHHHHHHHh
Confidence 34569999998632 11222211 33333222211 23444454 46789999999999999999999984
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 402 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 402 ----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
+|++++|||||+|||+.+++.+.+.+++++ +++|||++||++++++.+||++.+|++|.
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 679999999999999999999999998875 48999999999999999999999999985
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=2.4e-30 Score=237.41 Aligned_cols=209 Identities=21% Similarity=0.319 Sum_probs=176.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
.++++|+...- -|-.+|.++..||+.-++||||||||||+-.++|++ |-+|+|.++|.++.. ...++.
T Consensus 3 l~qln~v~~~t----------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLA 71 (248)
T COG4138 3 LMQLNDVAEST----------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELA 71 (248)
T ss_pred eeeeccccccc----------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHH
Confidence 45666665432 467789999999999999999999999999999988 569999999999854 334455
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG-- 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~-- 401 (568)
++-+|..|...-...|.|.+++.++- +.++....++++...++|+ ++..+.+++|||||.|||-+|...+.
T Consensus 72 rhRAYLsQqq~p~f~mpV~~YL~L~q-----P~~~~a~~i~~i~~~L~l~--DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 72 RHRAYLSQQQTPPFAMPVWHYLTLHQ-----PDKTRTELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHHHHHhhccCCcchhhhhhhhhhcC-----chHHHHHHHHHHHhhhccc--chhhhhhhhcCcccceeeEEeEEEEEec
Confidence 56688888776555688998887752 4456667888999999997 48999999999999999999987653
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 -----~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
..+++++|||.++||...+..+-.+|.+. .+|.+|||++||++-..+-+|++..++.|++...|..+++.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 34799999999999999988888888886 67999999999999999999999999999999999988753
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=1.2e-28 Score=240.58 Aligned_cols=164 Identities=24% Similarity=0.280 Sum_probs=129.2
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHH----hCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCC-----CCCCCCCH
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMM----IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-----LLWETLTG 341 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l----~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~-----~l~~~lTv 341 (568)
++++.+| +++|+||||||||||+++| .|..+|++|.+..+...+.. ...+..+++++|++ .+...+|+
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 4566677 9999999999999999999 49999988877622222222 13456799999987 34455678
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH------HHHHHHHcCCCCEEEEeCCCCCC
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR------LSVAISLIGNPKVVYMDEPSTGL 415 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr------l~la~Al~~~p~lllLDEPtsgL 415 (568)
.|++.+. + +.++++. .++++++||+||||| +++|+|++.+|+++++||||++|
T Consensus 94 ~~~~~~~------~----~~~~~~~-----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~L 152 (204)
T cd03240 94 LENVIFC------H----QGESNWP-----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNL 152 (204)
T ss_pred hhceeee------c----hHHHHHH-----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcccc
Confidence 8887542 1 1122222 267789999999996 78999999999999999999999
Q ss_pred CHHHHH-HHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 416 DPASRN-NLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 416 D~~~r~-~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
|+..++ .+.+++++.+ + |++||++||+++.++ .||+++.|.+.
T Consensus 153 D~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 153 DEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred CHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 999999 9999998864 4 899999999999875 69999988653
No 380
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.95 E-value=2.5e-27 Score=273.55 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=112.5
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCC
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGL 415 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsgL 415 (568)
||+.|++.|+..+++. .+..+.++.+||.. ...++++.+||||||||+.||++|+.+| +++||||||+||
T Consensus 792 ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~-l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 792 MTVEEALEFFEAIPKI------ARKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred CcHHHHHHHHHhchhh------hHHHHHHHHCCCCc-ccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 7999999998766432 23467899999963 2468999999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 416 DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 416 D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
|+..++.++++|+++ ++|.|||++||+++++. .||+++.| ++|++++.|+++++.+.
T Consensus 865 D~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 999999999999986 46999999999999986 69999999 79999999999998764
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=3.8e-27 Score=282.35 Aligned_cols=213 Identities=20% Similarity=0.287 Sum_probs=160.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHH---------HHhCCCCCCce----E----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFIS---------MMIGITRTTSG----T---- 307 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~---------~l~Gl~~p~~G----~---- 307 (568)
.++++|++. ..|+|+|++|++||++||.|+||||||||++ .|.|...+..+ .
T Consensus 600 ~L~l~~~~~-----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~v 668 (1809)
T PRK00635 600 TLTLSKATK-----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRL 668 (1809)
T ss_pred eEEEecccc-----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCccccccccccccee
Confidence 467777641 2699999999999999999999999999999 66775433111 1
Q ss_pred EEECCeeCCCc-----------HHHhh---------cce-----EEEcCC------------------------------
Q 008362 308 AYVQGLDIRTD-----------MDRIY---------TSM-----GVCPQE------------------------------ 332 (568)
Q Consensus 308 i~i~G~~i~~~-----------~~~~r---------~~i-----g~~~Q~------------------------------ 332 (568)
|.|+-..+... .+.+| +.. .+.++.
T Consensus 669 i~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~G 748 (1809)
T PRK00635 669 VHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLG 748 (1809)
T ss_pred EEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCC
Confidence 22332222110 01222 111 112221
Q ss_pred --------CCCCCCCCHHHHHHHHhhh---cCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHc
Q 008362 333 --------DLLWETLTGREHLLFYGRL---KNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 333 --------~~l~~~lTv~e~l~~~~~l---~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
...|..+||.|+|.+...- .....++..+++ ++++.+||.+ . .++++.+||||||||++||+||+
T Consensus 749 kRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~--l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 749 KRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDY--LPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred cccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcc--hhhcCccccCCHHHHHHHHHHHHHh
Confidence 0256788999999885431 122334555666 5889999963 4 69999999999999999999997
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEE------CCEEEeecCHHHH
Q 008362 401 ---GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFV------DGSLQCIGNPKEL 470 (568)
Q Consensus 401 ---~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~------~G~l~~~g~~~~l 470 (568)
.+|+++||||||+|||+.+++.++++|+++ ++|.|||++||+++++ ..|||+++|. +|++++.|+++++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 699999999999999999999999999986 4699999999999999 7899999996 7999999999998
Q ss_pred HH
Q 008362 471 KA 472 (568)
Q Consensus 471 ~~ 472 (568)
..
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 65
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.6e-28 Score=245.89 Aligned_cols=204 Identities=26% Similarity=0.413 Sum_probs=168.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|+++.|.. +.--|..||++|++||++-|+|.|||||||+++.|+|+++|++|+|++||+++.. +.++.
T Consensus 321 ~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledY 395 (546)
T COG4615 321 KTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDY 395 (546)
T ss_pred cceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHH
Confidence 46999999999974 2256899999999999999999999999999999999999999999999999965 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC-Ccccc--cCCCCChhHHHHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-GVADK--QAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~--~~~~LSgG~kqrl~la~Al 399 (568)
|+-++-++-|..||+.+-..| .+...+.++..|+++.+.++ ...|. ..-.||.|||+|+++-.|+
T Consensus 396 R~LfSavFsDyhLF~~ll~~e------------~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPE------------GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCc------------cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 888888888888877532222 11234567777877777531 12233 2347999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+-+.+|+++||=-+.-||.-||.+.+.+.- ++ +||||+.+|||-.-- ..|||+.-|++|++++.-
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999999999999999999999998764 55 699999999995543 469999999999997653
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.8e-27 Score=224.28 Aligned_cols=233 Identities=18% Similarity=0.288 Sum_probs=185.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC----CceEEEECCeeCCC-cH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT----TSGTAYVQGLDIRT-DM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p----~~G~i~i~G~~i~~-~~ 319 (568)
.+.++||+..+....| ...|++++|+++.+|||-||+|.+|||||-..|.|+|..+- |.....+++.|+-. .+
T Consensus 3 LLDIrnL~IE~~TsqG--~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQG--WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCC--ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 4667888888865433 46799999999999999999999999999999999998753 55667777777633 22
Q ss_pred HH----hhcceEEEcCCC--CCCCCCCHHHHHHHH--h-hhcCCCch---hHHHHHHHHHHHcCCCC-CCcccccCCCCC
Q 008362 320 DR----IYTSMGVCPQED--LLWETLTGREHLLFY--G-RLKNLKGP---ALTQAVEESLKSVNLFH-GGVADKQAGKYS 386 (568)
Q Consensus 320 ~~----~r~~ig~~~Q~~--~l~~~lTv~e~l~~~--~-~l~~~~~~---~~~~~~~~~l~~~~L~~-~~~~~~~~~~LS 386 (568)
.+ +-+.|+++||++ .|.|.-++...|.-. . ..+|.-.+ -.++++-++|.++|+.+ ++....++.+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 234688999997 455654544333211 0 11221111 13467788999999963 234567899999
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEee
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI 464 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~ 464 (568)
-|+-|||.||+|++.+|+++|.||||+.+||..+.+++.++.++. +|.||++++||+..+.+.|||+-+|.-|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999864 589999999999999999999999999999999
Q ss_pred cCHHHHHHhcCCcEE
Q 008362 465 GNPKELKARYGGSYV 479 (568)
Q Consensus 465 g~~~~l~~~~~~~~~ 479 (568)
+..+++.+...+.|+
T Consensus 241 a~~e~l~~~PhHPYT 255 (330)
T COG4170 241 APSEELVTMPHHPYT 255 (330)
T ss_pred cchhHHhcCCCCchH
Confidence 999999887666664
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=3.8e-27 Score=248.39 Aligned_cols=220 Identities=20% Similarity=0.327 Sum_probs=163.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE--CCeeCCCcH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV--QGLDIRTDM 319 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i--~G~~i~~~~ 319 (568)
....+++.|+++.|.+ +..++|++|++.+|+-+||+|+|||||||+|++|+|-..|..-++-+ ..+++....
T Consensus 72 ~s~dvk~~sls~s~~g------~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG------VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccccceeeeeeeccCC------ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 3457999999999974 68999999999999999999999999999999999998886655433 223322111
Q ss_pred -HH----------hhcceEEEcCCCCCC-CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 320 -DR----------IYTSMGVCPQEDLLW-ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 320 -~~----------~r~~ig~~~Q~~~l~-~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
.. .++++-|.-.+-... ++---.+-...+.++.....+..+.++.++|..+|... +..++.+.+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~-~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS-EMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH-hHHHHHhhccCc
Confidence 11 111111111110000 11011112222333333445556667777888887764 678999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE-EeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l-~~~g~ 466 (568)
|+|+|+++||||..+|++|+|||||+|||+.++..+-+.|.+..++ ++++++|+-+.+..+|..|+-|.++++ ...|+
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCC
Confidence 9999999999999999999999999999999999999999887655 999999999999999999999999995 45566
Q ss_pred HHH
Q 008362 467 PKE 469 (568)
Q Consensus 467 ~~~ 469 (568)
.+.
T Consensus 304 ydq 306 (614)
T KOG0927|consen 304 YDQ 306 (614)
T ss_pred HHH
Confidence 544
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=1.8e-27 Score=250.76 Aligned_cols=207 Identities=18% Similarity=0.273 Sum_probs=170.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.+.+.++|+++.|.+ +..+.++++|.++.++.++++||||||||||+|+++|.+.|+.|.|.-.-+.
T Consensus 387 ~pvi~~~nv~F~y~~-----~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-------- 453 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD-----NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-------- 453 (614)
T ss_pred CCeEEEeccccCCCC-----cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc--------
Confidence 467999999999974 2369999999999999999999999999999999999999999998654332
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+++--|+- .+.-+.++.|++.=- . ++....+.+..++.++||+. +..+.+.++||+|||+||.+|++++
T Consensus 454 --~~~~y~Qh~~e~ldl~~s~le~~~~~--~---~~~~~~e~~r~ilgrfgLtg-d~q~~p~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 454 --KLPRYNQHLAEQLDLDKSSLEFMMPK--F---PDEKELEEMRSILGRFGLTG-DAQVVPMSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred --cchhhhhhhHhhcCcchhHHHHHHHh--c---cccchHHHHHHHHHHhCCCc-cccccchhhcccccchhHHHHHHHh
Confidence 244445542 344456777765421 1 22334577899999999983 6788999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEE-EeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSL-QCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l-~~~g~~~~l~~ 472 (568)
..|.+|+|||||+|||..+...+.+.|.+.. -+||++|||+..+.+++++|.+..+|++ ...|+...-+.
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~ 596 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKE 596 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHH
Confidence 9999999999999999999999999887654 4699999999999999999999998865 45677765544
No 386
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.94 E-value=1.2e-26 Score=225.32 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=128.9
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.++++++++.+| +.+|+|||||||||++..|......+.. ....|..+.. ........|++.+|+..++++
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 567888898887 8899999999999999998754332221 1111321110 001113458899998776651
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllLDEPtsgLD~~~ 419 (568)
. ......+.++++++. . +..++++++||+|||||++||+|+ +.+|++++|||||+|||+..
T Consensus 84 ------~----~~~~~~~~~~~~l~~---~--~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~ 148 (198)
T cd03276 84 ------P----LCVLSQDMARSFLTS---N--KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN 148 (198)
T ss_pred ------c----CCHHHHHHHHHHhcc---c--cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH
Confidence 1 111123567777776 3 368899999999999999999999 69999999999999999999
Q ss_pred HHHHHHHHHHh-cC---CceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 420 RNNLWNVVKRA-KQ---GRAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 420 r~~i~~~l~~~-~~---g~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
++.+.+.|++. ++ +.||+++||+++++..+ |||.||..++
T Consensus 149 ~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 149 RKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 99999999885 32 36999999999999985 9999998764
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.5e-25 Score=258.36 Aligned_cols=125 Identities=24% Similarity=0.359 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC---CCCEEEEeCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG---NPKVVYMDEPSTG 414 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~---~p~lllLDEPtsg 414 (568)
+||+.|.+.|+..++++ .+..++++.+||.. ...++++.+|||||+||+.||++|+. +|+++||||||+|
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~-l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsg 861 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTG 861 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCc-hhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCC
Confidence 47888888888765432 13457889999962 24689999999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHH
Q 008362 415 LDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKEL 470 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l 470 (568)
||+..++.+++.|+++. +|.|||++||+++++. .||++++| ++|+++..|+++++
T Consensus 862 LD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 862 LHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999874 6999999999999986 69999999 79999999999875
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=9.6e-26 Score=226.60 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=131.8
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-C-CCcH----
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-I-RTDM---- 319 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-i-~~~~---- 319 (568)
|+++|. |.|.+ .. +++..++ +++|+|||||||||++++|+++..++.|++...+.+ + ....
T Consensus 4 i~l~nf-~~~~~------~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~ 70 (247)
T cd03275 4 LELENF-KSYKG------RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKP 70 (247)
T ss_pred EEEECc-cccCC------Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccC
Confidence 677776 66642 11 2333344 999999999999999999999998888887655421 1 1110
Q ss_pred --HHhhcceEEEcCCCCC--CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC--------------------
Q 008362 320 --DRIYTSMGVCPQEDLL--WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG-------------------- 375 (568)
Q Consensus 320 --~~~r~~ig~~~Q~~~l--~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-------------------- 375 (568)
....-.+.+..|++.. +. .++.+....+ .+.+ .....+.++++++.+|+...
T Consensus 71 ~~~~~~v~~~f~~~~~~~~~~~-~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~ 146 (247)
T cd03275 71 DSNSAYVTAVYEDDDGEEKTFR-RIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPP 146 (247)
T ss_pred CCceEEEEEEEEcCCCcEEEEE-EEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCc
Confidence 1122234444444321 11 1111111100 1122 11223456788888888420
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~----p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~ 450 (568)
...++++.+||||||||++||+|++.+ |+++||||||+|||+..++.+.+.|++.. +|.+||++||+.+.. ..|
T Consensus 147 ~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~ 225 (247)
T cd03275 147 GKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKA 225 (247)
T ss_pred chhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhC
Confidence 122455689999999999999999864 99999999999999999999999999875 489999999997765 579
Q ss_pred CEEEEEEC
Q 008362 451 DRLGIFVD 458 (568)
Q Consensus 451 dri~il~~ 458 (568)
||+++|..
T Consensus 226 d~i~~~~~ 233 (247)
T cd03275 226 DALVGVYR 233 (247)
T ss_pred CeEEEEEe
Confidence 99998874
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=4.9e-25 Score=228.11 Aligned_cols=188 Identities=26% Similarity=0.341 Sum_probs=151.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++-.+++|.||+. .|+==.=+++.||++|++||||-||||+.++|+|.++|++|. ..+
T Consensus 341 ~lv~y~~~~k~~g~F-------~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~--------- 400 (591)
T COG1245 341 TLVEYPDLKKTYGDF-------KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED--------- 400 (591)
T ss_pred eeeecchheeecCce-------EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc---------
Confidence 356677888888742 333334467788999999999999999999999999999998 222
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
-+++|=||.-.--.+.||++.|.-..+-. ..... --.++++-++|+ +..++++.+||||+.|||+||.||..++
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~--~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLE--DLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchH--HHHhcccccCCchhHHHHHHHHHhcccc
Confidence 24889999754445679999876533221 11111 234567778886 4889999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
++.+||||++-||.+.|-.+-+.|++. ..++|.+++.||+-.++-++||+++.+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999999984 468999999999999999999998875
No 390
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=235.86 Aligned_cols=190 Identities=25% Similarity=0.339 Sum_probs=158.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...|+++||+..-+. .+..|+++++++++||-+-|.||||||||||+|+|+|+-|--+|+|..-.
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~---------- 454 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA---------- 454 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------
Confidence 468999999999875 35799999999999999999999999999999999999999999886541
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccc------cCCCCChhHHHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADK------QAGKYSGGMKRRLSVA 396 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~~LSgG~kqrl~la 396 (568)
-..+-|+||.|.+... |.+|-+.++...... .++++.++|.++||.+ ..++ =-..||+||||||++|
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~----~d~~l~~vL~~vgL~~--L~~rl~~~~~W~~vLS~GEqQRlafA 527 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPDF----SDAELVAVLHKVGLGD--LAERLDEEDRWDRVLSGGEQQRLAFA 527 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCCC----ChHHHHHHHHHcCcHH--HHHHHhccCcHhhhcChhHHHHHHHH
Confidence 1346799999998887 999999876443222 2456788899999863 3222 2346999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
|.++++|++++|||.|++||+.+...+.+++++.-.+.|||-++|.-.. ..+.++.+-
T Consensus 528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl-~~~h~~~l~ 585 (604)
T COG4178 528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL-WNFHSRQLE 585 (604)
T ss_pred HHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh-HHHHhhhee
Confidence 9999999999999999999999999999999987789999999998644 455555433
No 391
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.92 E-value=2.8e-24 Score=202.22 Aligned_cols=212 Identities=24% Similarity=0.321 Sum_probs=167.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH--
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-- 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~-- 320 (568)
..+|+++|++++|.. ..+++-|+|++++.|...-|+|.||||||||+|+|+|-.-.-.|.|.+.|.+.-.+..
T Consensus 11 ~~aievsgl~f~y~~-----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV-----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEeccc-----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 357999999999985 3589999999999999999999999999999999999776677999999988632110
Q ss_pred ----------HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 321 ----------RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 321 ----------~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
++++..++-- +-.+-.++++++.+ |. ..|... ++-+++++.+++. ..=+.+.+|-|||
T Consensus 86 ~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fg--V~g~dp----~Rre~LI~iLDId----l~WRmHkvSDGqr 153 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FG--VGGDDP----ERREKLIDILDID----LRWRMHKVSDGQR 153 (291)
T ss_pred ccCceeEecccccccccccc-cccccccccHHHHH-hh--ccCCCh----hHhhhhhhheecc----ceEEEeeccccch
Confidence 1222222222 22233456775533 32 223222 4556777777774 3346678999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~ 468 (568)
|||.|++.|+..=++++|||-|-.||..+|..+.+.+++. .+|.||+..||-.+-.+....+++-|++|+++..-..+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 9999999999999999999999999999999999999874 46999999999999999999999999999999855555
Q ss_pred HHH
Q 008362 469 ELK 471 (568)
Q Consensus 469 ~l~ 471 (568)
.++
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 544
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.7e-24 Score=227.24 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=172.5
Q ss_pred CCCeEEEEeEEEEcCCCCCCCcc-ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH
Q 008362 242 TSHAIISDNLRKIYPGRDGNPEK-VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD 320 (568)
Q Consensus 242 ~~~~i~~~~l~k~y~~~~~~~~~-~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~ 320 (568)
..+.+++.++++.|.. +. +...+++++++.-+-.+.+|+||+||||++|++.|-..|++|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-------- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-------- 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--------
Confidence 3467999999999974 23 799999999999999999999999999999999999999999987664
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
|.+++|-.|+.+=+-++.+-+--.+.....|. .++++++.+..+||+. +.+.+.+.+||||||-||++|.+..
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g-~la~~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSG-ELALQSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCc-hhhhccccccCCcchhHHHHHHHhc
Confidence 56799999987655555565543333333444 3466788899999984 7888889999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe-ecCH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNP 467 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~-~g~~ 467 (568)
.+|.+|+|||||+.||..+-..+-+.|+... -.||++|||.+.+..+|+.+.+.++|++.- .|..
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999888888777654 459999999999999999999999999875 3444
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.8e-24 Score=227.20 Aligned_cols=201 Identities=22% Similarity=0.330 Sum_probs=152.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.-|.+.+.+..||+ +..|++-++++..|.-+||+||||+|||||||+|+. |.|.....+ +++|
T Consensus 79 ~Di~~~~fdLa~G~------k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----qE~~ 141 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG------KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----QEVR 141 (582)
T ss_pred cceeeeeeeeeecc------hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----hhee
Confidence 35888999999984 679999999999999999999999999999999997 555433321 1111
Q ss_pred cceEEEcC-CCCCCCCCCHHHHHHHHhhhcCCCch-hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 324 TSMGVCPQ-EDLLWETLTGREHLLFYGRLKNLKGP-ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q-~~~l~~~lTv~e~l~~~~~l~~~~~~-~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
. -+++- ...+-.++++.+.+.--..+ ... +..+...++|..+|.++ +...+++++||||.|-|+++||||..
T Consensus 142 g--~~t~~~~~~l~~D~~~~dfl~~e~~l---~~~~~l~ei~~~~L~glGFt~-emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 142 G--DDTEALQSVLESDTERLDFLAEEKEL---LAGLTLEEIYDKILAGLGFTP-EMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred c--cchHHHhhhhhccHHHHHHHHhhhhh---hccchHHHHHHHHHHhCCCCH-HHHhccccccCcchhhHHHHHHHHhc
Confidence 0 01111 12344454444444322111 111 22333444899999985 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe-ecCHHH
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC-IGNPKE 469 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~-~g~~~~ 469 (568)
+|++|+|||||+.||..+...+-+.|+..+ .|+|++|||-......|..|+-+++-|+-. .|+.++
T Consensus 216 ~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred CCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999888765 899999999999999999999888877643 465544
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.91 E-value=4.1e-24 Score=245.29 Aligned_cols=210 Identities=24% Similarity=0.350 Sum_probs=179.2
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC---CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT---TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p---~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
...+++|+|.-+++|+.+-++||.|||||||++.++|-+.- ..|+|..||++...... ++.++|++|+|..++.|
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEecccccccccee
Confidence 35799999999999999999999999999999999997543 35699999999865443 67899999999999999
Q ss_pred CHHHHHHHHhhhcCCC-------chhH-HHHHHHHHHHcCCCCCCcccc-----cCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 340 TGREHLLFYGRLKNLK-------GPAL-TQAVEESLKSVNLFHGGVADK-----QAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~-------~~~~-~~~~~~~l~~~~L~~~~~~~~-----~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
||+|.|.|.++.++.. +++. ....+.+++.+||.+ .+|. ..+..|||||+||++|-+++++|+++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~--~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH--CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh--hccceecccccccccCcccceeeeeeeeecCccee
Confidence 9999999999988641 1111 114678999999975 4444 45579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCH-HHHHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSM-EEAEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~-~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
+.||+|.|||..+.-++.+.|++.. .+.|.+++-|.. +++-.+-|.|++|.+|+++..|+.++.+.-|..
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~ 355 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFED 355 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHh
Confidence 9999999999999999999999863 377777776665 588889999999999999999999999876643
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.89 E-value=2.1e-23 Score=203.08 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=112.5
Q ss_pred eeeeeEEEEeCCc-EEEEEcCCCCcHHHHHHHHh--------CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 266 AVNGLSLALPSGE-CFGMLGPNGAGKTTFISMMI--------GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 266 al~~isl~i~~Ge-i~~LlG~NGaGKTTll~~l~--------Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+-++|+++.+|+ +++|.||||+|||||+|+|+ |...|....+ .++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------~~~~~~~~---- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------SLPVFENI---- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------cCcCccEE----
Confidence 4567899999995 89999999999999999998 4444421110 12333332
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
+..++.. +..++..+++|+||||++.+++++ .+|+++++|||++|+|
T Consensus 76 ------------------------------~~~lg~~--~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 76 ------------------------------FADIGDE--QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred ------------------------------EEecCch--hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 1112222 234566789999999999999884 8999999999999999
Q ss_pred HHHHHHHHH-HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 417 PASRNNLWN-VVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 417 ~~~r~~i~~-~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
+..++.++. ++++++ .|.++|++||+ .+...+|||+..|.+|++...+
T Consensus 123 ~~~~~~i~~~~l~~l~~~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 123 PVEGAALAIAILEELLERGALVIATTHY-GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCH-HHHHHHHhcCCCeEEEEEEEec
Confidence 999999975 566654 58999999998 5677899999999999998763
No 396
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1e-22 Score=209.28 Aligned_cols=202 Identities=24% Similarity=0.317 Sum_probs=158.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.+.+-++||++.|++ .++.+++++|.|.-...++|+||||.|||||+++|.|-+.|+.|+.+-+ -
T Consensus 584 PPvLGlH~VtFgy~g-----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------h 648 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPG-----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------H 648 (807)
T ss_pred CCeeecccccccCCC-----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------c
Confidence 356889999999975 4789999999999999999999999999999999999999999986422 2
Q ss_pred hcceEEEcCCC--CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc-ccCCCCChhHHHHHHHHHHH
Q 008362 323 YTSMGVCPQED--LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD-KQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 323 r~~ig~~~Q~~--~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~-~~~~~LSgG~kqrl~la~Al 399 (568)
|-+||+.-|+. .|-..-|..|.|. +...++. +.+.+.|-.+||.. +++ -++..||||||-||++|---
T Consensus 649 rL~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpy----q~ARK~LG~fGL~s--HAHTikikdLSGGQKaRValaeLa 719 (807)
T KOG0066|consen 649 RLRIGWFDQHANEALNGEETPVEYLQ---RKFNLPY----QEARKQLGTFGLAS--HAHTIKIKDLSGGQKARVALAELA 719 (807)
T ss_pred eeeeechhhhhHHhhccccCHHHHHH---HhcCCCh----HHHHHHhhhhhhhh--ccceEeeeecCCcchHHHHHHHHh
Confidence 44699988875 3444556666554 3344443 34667788899963 444 47899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKEL 470 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l 470 (568)
++.|+||||||||++||..+...+-+.|++++. .||++|||-..+.+..-.+.++.+-.|- -.|..++-
T Consensus 720 l~~PDvlILDEPTNNLDIESIDALaEAIney~G--gVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 720 LGGPDVLILDEPTNNLDIESIDALAEAINEYNG--GVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred cCCCCEEEecCCCCCcchhhHHHHHHHHHhccC--cEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 999999999999999999999999999988754 5899999976665554455565554332 23444443
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.7e-22 Score=198.55 Aligned_cols=84 Identities=14% Similarity=0.241 Sum_probs=73.2
Q ss_pred cccccCCCCChhHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-C-ceEEEEcCCHHHHHHh
Q 008362 377 VADKQAGKYSGGMKRRLSVAIS----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-G-RAIILTTHSMEEAEAL 449 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~A----l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g-~tiil~tH~~~e~~~l 449 (568)
+.+..+.+||||||||+.+|++ ++.+|+++++||||+|||+..++.+++.+.+. ++ | .|+|++||++.+....
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~ 198 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNY 198 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcc
Confidence 4577889999999999887754 45899999999999999999999999999885 44 5 5899999999888888
Q ss_pred CC--EEEEEECCE
Q 008362 450 CD--RLGIFVDGS 460 (568)
Q Consensus 450 ~d--ri~il~~G~ 460 (568)
|| ++++|++|+
T Consensus 199 ~~~~~v~~l~~g~ 211 (213)
T cd03277 199 HEKMTVLCVYNGP 211 (213)
T ss_pred cCceEEEEEecCc
Confidence 87 788888886
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=4.5e-22 Score=206.28 Aligned_cols=171 Identities=25% Similarity=0.388 Sum_probs=131.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-------------CCCcHHHhh-c--ceEEEcCCC----
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-------------IRTDMDRIY-T--SMGVCPQED---- 333 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-------------i~~~~~~~r-~--~ig~~~Q~~---- 333 (568)
..+|+++||+||||-||||.+|+|+|.+.|.=|+- ++.+ +.+-..++. . ++..=||.-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 46899999999999999999999999999987763 2211 000000111 0 122233321
Q ss_pred CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC
Q 008362 334 LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST 413 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts 413 (568)
..+.. ||.|-|.- .+.+...+++.++++|. +..++.+++||||+.||++||.|++.+++++++|||||
T Consensus 175 k~~KG-~v~elLk~---------~de~g~~devve~l~L~--nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsS 242 (591)
T COG1245 175 KVVKG-KVGELLKK---------VDERGKFDEVVERLGLE--NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSS 242 (591)
T ss_pred HHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcch--hhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcc
Confidence 11222 44444431 11123567889999997 48999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 414 GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 414 gLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
-||...|-...++|+++. .+++||++.||+.-.+.++|-|.|+..
T Consensus 243 yLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 243 YLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred cccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999975 489999999999999999999999863
No 399
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=204.66 Aligned_cols=201 Identities=21% Similarity=0.254 Sum_probs=157.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
+.+|++++|+..-++. +..+++|+||+|++|+-+-|.||||||||+|+|+++|+-+-++|++.-....-
T Consensus 431 Dn~i~~e~v~l~tPt~----g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------- 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN----GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------- 499 (659)
T ss_pred cceEEeeeeeecCCCC----CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-------
Confidence 4689999999988752 35789999999999999999999999999999999999999999997554221
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhh-hcCCCchhHHHHHHHHHHHcCCCC----CCcccc-----cCCCCChhHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGR-LKNLKGPALTQAVEESLKSVNLFH----GGVADK-----QAGKYSGGMKRR 392 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~-----~~~~LSgG~kqr 392 (568)
-+.+-|+||.|..-.. |.||.+.++.. .....+...++++.+.|+.++|.| .+-.|. =...||+|||||
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR 578 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR 578 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH
Confidence 1457899999987666 99999988622 111112223456777777777753 001121 123699999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++.||-+.++|++-||||-||++|......+.+.+++ .|.|.|-++|.-..- ..=|.+.-|+.
T Consensus 579 La~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 579 LAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHH-hhhhEEEEecC
Confidence 9999999999999999999999999999999888765 489999999997654 45677766653
No 400
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.86 E-value=8.5e-22 Score=194.66 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=119.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~ 342 (568)
+.+.+|++++.++|++++|.||||+||||++++++= ..+..++| ++|.+....+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------------------~~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------------------IVLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------------------HHHHHHhCCCcCcccEEEe-----
Confidence 468999999999999999999999999999999981 12334556 6666543222
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCCEEEEeCC---CCCCCH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 417 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al--~~~p~lllLDEP---tsgLD~ 417 (568)
.++++++.+++. +...+.+|.||++++.+++++ +.+|+++||||| |+++|+
T Consensus 72 -------------------~~~~il~~~~l~-----d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~ 127 (222)
T cd03285 72 -------------------IVDCILARVGAS-----DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDG 127 (222)
T ss_pred -------------------ccceeEeeeccc-----cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHH
Confidence 123455666764 233678999999999999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.++.. .+++.+ +.|.++|++||+ .++..+||++..+++|++...++
T Consensus 128 ~~~~~--~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 128 FGLAW--AIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHH--HHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 98853 333433 348899999996 78888999999999999988765
No 401
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3e-21 Score=197.18 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 380 KQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
+...+|||||+||+++|++++. +|+++++||||+|||+..++.+.+.+++..++.|+|++||+++.+ .+||++++
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~ 244 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFL 244 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEE
Confidence 3444599999999999987654 999999999999999999999999999877789999999999865 68999999
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98874
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.85 E-value=2.5e-21 Score=188.18 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=109.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|++++. |++++|+||||||||||+|+|+|... +...|.++... .+.+|.+.+|+.+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~--------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS--------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC--------ccCcccceEEEeccchh
Confidence 45788887776 79999999999999999999988543 22355554221 36677788999999999
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
++.+.... ...+ .+++.++++.+++ .+|+++++|||++|+|+..+..+
T Consensus 79 ~l~~~~s~---~~~e-~~~~~~iL~~~~~----------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 79 DLRDGISY---FYAE-LRRLKEIVEKAKK----------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred ccccccCh---HHHH-HHHHHHHHHhccC----------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 99774321 1222 2456677765531 79999999999999999999876
Q ss_pred H-HHHHHh-cCCceEEEEcCCHHHHHHh--CCEEEEE
Q 008362 424 W-NVVKRA-KQGRAIILTTHSMEEAEAL--CDRLGIF 456 (568)
Q Consensus 424 ~-~~l~~~-~~g~tiil~tH~~~e~~~l--~dri~il 456 (568)
. .+++++ ++|.++|++||+++++..+ .+++..+
T Consensus 127 ~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 4 567765 4589999999999999876 4555443
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.84 E-value=2.7e-20 Score=190.96 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=158.9
Q ss_pred CeEEEEeEEEEcCCC--------------------CCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC---
Q 008362 244 HAIISDNLRKIYPGR--------------------DGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--- 300 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~--------------------~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--- 300 (568)
..+.++|++|.|.+. .......+++|+||++++|++++++|++||||||+++||.|.
T Consensus 356 ~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~ 435 (593)
T COG2401 356 GPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG 435 (593)
T ss_pred CccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhc
Confidence 457888888887531 001245689999999999999999999999999999999994
Q ss_pred -----CCCCceEEEECCeeCCCcHHHhhcceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC
Q 008362 301 -----TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH 374 (568)
Q Consensus 301 -----~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~ 374 (568)
++|++|.|.+--..+ -..+|-.. .-|..-|+.||+.- . ++ + .....++|+..|+.+
T Consensus 436 ~~ee~y~p~sg~v~vp~nt~----------~a~iPge~Ep~f~~~tilehl~s---~---tG-D-~~~AveILnraGlsD 497 (593)
T COG2401 436 RGEEKYRPDSGKVEVPKNTV----------SALIPGEYEPEFGEVTILEHLRS---K---TG-D-LNAAVEILNRAGLSD 497 (593)
T ss_pred ccccccCCCCCceeccccch----------hhccCcccccccCchhHHHHHhh---c---cC-c-hhHHHHHHHhhccch
Confidence 679999987643221 12445432 22346688888752 1 11 1 234567899999987
Q ss_pred CCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHh-CC
Q 008362 375 GGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEAL-CD 451 (568)
Q Consensus 375 ~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l-~d 451 (568)
.-...++.++||.|||.|+.||.++..+|.+++.||-.|.||+.+...+..-|.++. .|.|++++||+.|...+| -|
T Consensus 498 AvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD 577 (593)
T COG2401 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPD 577 (593)
T ss_pred hhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCc
Confidence 555677889999999999999999999999999999999999999999999999863 499999999999999999 78
Q ss_pred EEEEEECCEE
Q 008362 452 RLGIFVDGSL 461 (568)
Q Consensus 452 ri~il~~G~l 461 (568)
+++...-|+.
T Consensus 578 ~li~vgYg~v 587 (593)
T COG2401 578 TLILVGYGKV 587 (593)
T ss_pred eeEEeecccc
Confidence 8888776654
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=4.4e-20 Score=176.39 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.3
Q ss_pred CChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 385 YSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 385 LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
||||||||+++|++++ .+|+++++|||++|||+..++.+.+.+++. ++|+++|++||+++.+. .|||++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 799999999999999999999999999886 45799999999998775 7999998875
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=6e-20 Score=172.82 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=102.8
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEE-EcCCCCCCCCCCHHHHHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGV-CPQEDLLWETLTGREHLL 346 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~-~~Q~~~l~~~lTv~e~l~ 346 (568)
...+..+.++.+..|+|||||||||+++.+....-..+|.+... .+. +.|+ +|+...-+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE----------
Confidence 44455666667999999999999999999887665555544331 110 1111 22221111
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~ 422 (568)
+. ...+||+||+||+++|++|.. +|+++++|||++|+|+..++.
T Consensus 72 -------------------------i~-------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 -------------------------IF-------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred -------------------------eh-------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 10 001299999999999999986 789999999999999999999
Q ss_pred HHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 423 LWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 423 i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
+.+.+.+. +++.++|++||+.+.++ .+||++.|..
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 99999875 45899999999999987 5899999864
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.80 E-value=2.6e-20 Score=181.52 Aligned_cols=153 Identities=17% Similarity=0.184 Sum_probs=105.0
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
-.++++.+|++++|.|||||||||++++|++.. .+..|... . .-+..++++.|. +.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-~---------~~~~~i~~~dqi---~~---------- 77 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-P---------AESASIPLVDRI---FT---------- 77 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-c---------ccccccCCcCEE---EE----------
Confidence 345555689999999999999999999999543 22222110 0 001123332221 11
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH-HH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW-NV 426 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~-~~ 426 (568)
.++.. +......+.+|+++|| ++.+.+++.+|+++|+||||+|+||..+..+. .+
T Consensus 78 ---------------------~~~~~--d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~l 133 (202)
T cd03243 78 ---------------------RIGAE--DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAV 133 (202)
T ss_pred ---------------------EecCc--ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHH
Confidence 11111 1223445567777765 77778889999999999999999999988775 45
Q ss_pred HHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 427 VKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 427 l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
++.+ +.+.++|++||+++.++ .|+++..+.+|++...++..+
T Consensus 134 l~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 134 LEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 6655 45899999999987776 688999999999998886633
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=9.7e-19 Score=178.13 Aligned_cols=190 Identities=21% Similarity=0.315 Sum_probs=121.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC----------------c-----------------------e
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT----------------S-----------------------G 306 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~----------------~-----------------------G 306 (568)
.+++.++++.+| +.+|+|||||||||++.+|.-+.... . |
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~ 89 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGG 89 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCC
Confidence 456777888776 78999999999999998876443211 0 0
Q ss_pred --EEEECCeeCCCcHHHh---hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh---HHHHHHHHHHHc-----CCC
Q 008362 307 --TAYVQGLDIRTDMDRI---YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA---LTQAVEESLKSV-----NLF 373 (568)
Q Consensus 307 --~i~i~G~~i~~~~~~~---r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~---~~~~~~~~l~~~-----~L~ 373 (568)
.+++||..+.. ..++ ...+.+.|++..|.. .+..++..|.-.+-+...++ ..++.+++++.. |-.
T Consensus 90 ~~~~~ing~~~~~-l~~l~~~l~~i~~~~~~~~l~~-~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~ 167 (270)
T cd03242 90 GRKARLNGIKVRR-LSDLLGVLNAVWFAPEDLELVK-GSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPH 167 (270)
T ss_pred ceEEEECCeeccC-HHHHhCcCcEEEEecchhhhhc-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 22233333321 1222 223555666555553 25556666543332211111 111222222211 111
Q ss_pred CCCc-----ccccCCCCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 008362 374 HGGV-----ADKQAGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 439 (568)
Q Consensus 374 ~~~~-----~~~~~~~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~ 439 (568)
.++. .......+|+||||++++|++|+ ++|+++++||||++||+..++.+++.+++.. .++++
T Consensus 168 ~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~ 244 (270)
T cd03242 168 RDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVT 244 (270)
T ss_pred hhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEE
Confidence 0000 12235568999999999999985 8999999999999999999999999997653 57788
Q ss_pred cCCHHHHHHhC---CEEEEEECCEE
Q 008362 440 THSMEEAEALC---DRLGIFVDGSL 461 (568)
Q Consensus 440 tH~~~e~~~l~---dri~il~~G~l 461 (568)
+|+.+++..+| ++++.+++|++
T Consensus 245 ~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 245 TTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred eCCchhccchhccCccEEEEeCcEE
Confidence 88888888888 78999999986
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=1.8e-19 Score=175.66 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=109.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|+++++++|++++|.||||+||||++++++|+. ++.++|. |- +.....+++.|
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~--------------------~la~~G~-~v-pa~~~~l~~~d 73 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA--------------------IMAQIGC-FV-PAEYATLPIFN 73 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH--------------------HHHHcCC-Cc-chhhcCccChh
Confidence 56999999999999999999999999999999999873 2334442 11 34445556666
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
++. ..++.. +..++..+++|+||+|+ +.+.+++.+|++++||||++|+||..+..+
T Consensus 74 ~I~---------------------~~~~~~--d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 74 RLL---------------------SRLSND--DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred hee---------------------EecCCc--cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 652 223332 24567788999999975 566778999999999999999999876665
Q ss_pred -HHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 424 -WNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 424 -~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
+.+++.+ +.|.++|++||+.+.++.+++
T Consensus 130 ~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 130 SLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 4556665 469999999999999988774
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.80 E-value=4.6e-19 Score=205.31 Aligned_cols=131 Identities=24% Similarity=0.391 Sum_probs=111.7
Q ss_pred CCCCHHHHHHHHhhhcCCCch----------hHHHHHHHHHHHcCCCCCCc-ccccCCCCChhHHHHHHHHHHHcCCC--
Q 008362 337 ETLTGREHLLFYGRLKNLKGP----------ALTQAVEESLKSVNLFHGGV-ADKQAGKYSGGMKRRLSVAISLIGNP-- 403 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~----------~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSgG~kqrl~la~Al~~~p-- 403 (568)
-.+||.|.+.|...+ +.+.+ ++.++++ .|+.+||.+ . .++++.+|||||||||.||+||..+|
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~--l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~ 510 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDY--LTLSRSAGTLSGGEAQRIRLATQIGSGLTG 510 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCC--CCCCCchhhCCHHHHHHHHHHHHHhhCCCC
Confidence 358899998886554 22221 3344554 688899963 4 69999999999999999999999997
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+++||||||+||||..++.++++|++++ +|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 511 ~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred cEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999975 5999999999999987 59999999 9999999999999854
No 410
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.79 E-value=1.8e-19 Score=189.48 Aligned_cols=179 Identities=23% Similarity=0.362 Sum_probs=138.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|.++|+-..-+. ...++..+||+|++|--.-|.||||||||+|+|+|.|+-|...|...+-- +.
T Consensus 481 gI~lenIpvItP~-----~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----------~~ 545 (728)
T KOG0064|consen 481 GIILENIPVITPA-----GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----------PN 545 (728)
T ss_pred ceEEecCceeccC-----cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC----------Cc
Confidence 4888888887764 35689999999999999999999999999999999999988777654321 24
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhh-----hcCCCchhHHHHHHHHHHHcCCCCCCcccccC---------CCCChhHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGR-----LKNLKGPALTQAVEESLKSVNLFHGGVADKQA---------GKYSGGMK 390 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~-----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---------~~LSgG~k 390 (568)
+|-|+||.|..- .=|.+|.+.++-. -+|.+. +..+.+|+.+.|++ ...+.. ..||||+|
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~--i~qr~~g~da~~dWkd~LsgGek 618 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEH--ILQREGGWDAVRDWKDVLSGGEK 618 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHH--HHHhccChhhhccHHhhccchHH
Confidence 599999998654 3366666655321 234443 34556666666642 222222 25999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
||+.+||.+-++|+..+|||.||++.+.....+.+..++ -|.+.|-+||......
T Consensus 619 QR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk 673 (728)
T KOG0064|consen 619 QRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHH
Confidence 999999999999999999999999999999999887654 4899999999986543
No 411
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=4e-18 Score=205.38 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=150.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------CCCCCCceEEEECCeeCCC----c-------HHHhhc
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------GITRTTSGTAYVQGLDIRT----D-------MDRIYT 324 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------Gl~~p~~G~i~i~G~~i~~----~-------~~~~r~ 324 (568)
=|+|++.+|+-|..+++-|.+|||||||++-.. |.. .-+--|.|+-.+|.. . .+.+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~-~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS-VFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc-ccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997433 322 223347777665521 1 112221
Q ss_pred c----------------------eEEEcC---------CCCCC--------------------------------CCCCH
Q 008362 325 S----------------------MGVCPQ---------EDLLW--------------------------------ETLTG 341 (568)
Q Consensus 325 ~----------------------ig~~~Q---------~~~l~--------------------------------~~lTv 341 (568)
- =|-||. +-.+. -+|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 111221 00111 14788
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPA 418 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~ 418 (568)
.|-+.|+... +.+ .+.-+.|..+||.. -...++..+|||||.||+-||.-|..+ +.+++|||||+||++.
T Consensus 1664 ~ea~~~F~~~-----~~i-~~~L~~L~~vGLgY-l~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~ 1736 (1809)
T PRK00635 1664 EEVAETFPFL-----KKI-QKPLQALIDNGLGY-LPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQ 1736 (1809)
T ss_pred HHHHHHhhcc-----HHH-HHHHHHHHHcCCCe-eeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHH
Confidence 8888877432 222 34456788999973 356899999999999999999999865 7899999999999999
Q ss_pred HHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 419 SRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
..+.+.++++++ ..|.|||++.||++.+.. ||.|+=| ..|++++.|+|+++.+.
T Consensus 1737 d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1737 QKSALLVQLRTLVSLGHSVIYIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhC
Confidence 999999999997 579999999999999987 9999988 45799999999999763
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=1.3e-18 Score=201.34 Aligned_cols=132 Identities=27% Similarity=0.364 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHhhhcCCCc---------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEE
Q 008362 338 TLTGREHLLFYGRLKNLKG---------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVV 406 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~---------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~ll 406 (568)
.||+.|.+.|...+.-... +++.+++ +.+..+||.. -..++++.+|||||+||+.||+||+.+| +++
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~-l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDY-LTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccc-cccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 6899999888876531110 1222233 2467788852 1268999999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
||||||+||||..++.++++|++++ +|.|||+++|+++++. .|||+++| ++|+++..|+++++..
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999974 6999999999999987 89999999 8999999999999853
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.9e-20 Score=189.01 Aligned_cols=215 Identities=20% Similarity=0.315 Sum_probs=161.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCC-cH--
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRT-DM-- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~-~~-- 319 (568)
-|.++|.+.+-.+ +..+.|-||.|-.|..+||+||||-|||||++-|+. +--|..=++.++.+.+.. ..
T Consensus 264 DIKiEnF~ISA~G------k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISAQG------KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeeccc------ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 4788888777653 568999999999999999999999999999999986 333445566666666521 10
Q ss_pred -H----HhhcceEEEcCCC-----CCCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 320 -D----RIYTSMGVCPQED-----LLWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 320 -~----~~r~~ig~~~Q~~-----~l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
+ .-.++..++-... .--.+.|+.|-+.- +..++.+.....+.++.++|.-+|.+. +..+++...+|||
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFsk-EMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSK-EMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCCh-hHhcCCccccCCc
Confidence 0 0011122211111 11134677777754 445655444455667889999999985 6789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEee-cCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCI-GNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~-g~~ 467 (568)
.|-|+++||||..+|-+|.|||||+.||-.+.-.+-+.|+.. .+|.+++|||-...+..|..|+-+++-++... |+.
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999998877776666544 37999999999999999999999999888653 444
Q ss_pred H
Q 008362 468 K 468 (568)
Q Consensus 468 ~ 468 (568)
.
T Consensus 495 ~ 495 (807)
T KOG0066|consen 495 T 495 (807)
T ss_pred H
Confidence 3
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.4e-17 Score=183.50 Aligned_cols=128 Identities=24% Similarity=0.362 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTG 414 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsg 414 (568)
+|||.|-..|+.... .+. +.-+.|..+||.- -...+++.+|||||.||+-||.-|.... -+.||||||+|
T Consensus 783 ~MTveEA~~FF~~~p-----~I~-rkLqtL~dVGLgY-i~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 783 DMTVEEALEFFEAIP-----KIA-RKLQTLVDVGLGY-IKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred hccHHHHHHHHhcch-----HHH-HHHHHHHHcCcce-EecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 578888888886542 233 3345677899963 3468999999999999999999999887 89999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 415 LDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
|-..-.+++.+.|.++ .+|.|||++.|+|+.+.. ||.|+=| ..|++++.|+|+++.+.
T Consensus 856 LH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~-AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT-ADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecccceEee-cCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999996 579999999999998864 9999877 56899999999999863
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.73 E-value=1.4e-17 Score=168.74 Aligned_cols=141 Identities=19% Similarity=0.222 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~ 355 (568)
.-++++||||||||||+++|+|+++|++|++.++|+++.. ...++.+.++++||++ +.+.++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k-------- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK-------- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH--------
Confidence 5789999999999999999999999999999999999853 3445666788899965 4455666554210
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCce
Q 008362 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRA 435 (568)
Q Consensus 356 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~t 435 (568)
.+ |+ ..+++| .+|+++++|||++ ++.+..+++..++|.+
T Consensus 183 -------~~-----------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~ 221 (270)
T TIGR02858 183 -------AE-----------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVS 221 (270)
T ss_pred -------HH-----------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCE
Confidence 00 11 223333 5999999999974 3445555555567999
Q ss_pred EEEEcCCHHH--H-----------HHhCCEEEEEECCEEEeecCHHHH
Q 008362 436 IILTTHSMEE--A-----------EALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 436 iil~tH~~~e--~-----------~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+|+|||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 222 vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 222 IIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 9999997655 4 35689999999887 66776554
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.70 E-value=1e-16 Score=165.34 Aligned_cols=176 Identities=30% Similarity=0.395 Sum_probs=140.1
Q ss_pred cceeeeeEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~ 338 (568)
+.-+-+..|.|..| |+...+|.||.||||+++|++|.++|++|. ++. .-+++|=||.-.--..
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p------~lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIP------VLNVSYKPQKISPKRE 416 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccc------ccceeccccccCcccc
Confidence 45677888888887 578999999999999999999999998863 111 1247888887544334
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
-||++.+.- .++.. -...+-+.+.++-+.++ +..|+.+.+||||++||+++|.+|=..+++.+.|||++-||.+
T Consensus 417 ~tvR~ll~~--kIr~a--y~~pqF~~dvmkpL~ie--~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSe 490 (592)
T KOG0063|consen 417 GTVRQLLHT--KIRDA--YMHPQFVNDVMKPLQIE--NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSE 490 (592)
T ss_pred chHHHHHHH--HhHhh--hcCHHHHHhhhhhhhHH--HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChH
Confidence 588876543 22211 11134456667777775 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 419 SRNNLWNVVKR--AKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 419 ~r~~i~~~l~~--~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
.|...-..+++ +..++|-.++.||.-.+.-++||+++..
T Consensus 491 QRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 491 QRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999988 3678999999999999999999998764
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.70 E-value=2.6e-17 Score=162.12 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=105.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
+.+.+|++++..+ ++++|.||||+||||++|++++..-. |+ .|..+. ..+.+++++.| +++.+++.|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp----~~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVP----ASKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeec----cccceecceee---EeccCCchh
Confidence 4589999999987 99999999999999999999875422 11 122221 11245677654 566777777
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh--hHHHHHHHHHHHcCCCCEEEEeCC---CCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG--GMKRRLSVAISLIGNPKVVYMDEP---STGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg--G~kqrl~la~Al~~~p~lllLDEP---tsgLD~~ 418 (568)
++.... |. .+.++++-+.+.+.+|++++|||| |+++|+.
T Consensus 85 ~ls~g~------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~ 128 (216)
T cd03284 85 DLAGGR------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGL 128 (216)
T ss_pred hhccCc------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHH
Confidence 665320 11 112233333334679999999999 8888876
Q ss_pred HHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 419 SRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 419 ~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+. .+.+++.+ +. +.++|++||+. +...++|++..+.+|++...++.+++
T Consensus 129 ~~--~~~il~~l~~~~~~~vi~~TH~~-~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 129 SI--AWAIVEYLHEKIGAKTLFATHYH-ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HH--HHHHHHHHHhccCCcEEEEeCcH-HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 53 33344443 33 78999999997 55668999888899999887776554
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.65 E-value=7.1e-15 Score=155.67 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCCCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhC--
Q 008362 382 AGKYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALC-- 450 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~-- 450 (568)
...+|.||||++++|++|+ ++|++++||||+++||+..++.+++.+.+. +..+++|||+++.+..++
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~ 348 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLEN 348 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhcc
Confidence 3579999999999999985 899999999999999999999999988753 458999999998887775
Q ss_pred CEEEEEECCEE
Q 008362 451 DRLGIFVDGSL 461 (568)
Q Consensus 451 dri~il~~G~l 461 (568)
+++..|++|++
T Consensus 349 ~~i~~v~~G~i 359 (361)
T PRK00064 349 AKIFHVEQGKI 359 (361)
T ss_pred CcEEEEeCCEE
Confidence 57999999987
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.63 E-value=1.2e-16 Score=153.65 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=66.2
Q ss_pred HHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCceEEEEcCCHH
Q 008362 368 KSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSME 444 (568)
Q Consensus 368 ~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i-~~~l~~~-~-~g~tiil~tH~~~ 444 (568)
..++.. +..++..+++|+|++|...+.+ .+.+|+++++|||++|+||..+..+ +.+++.. + .+.++|++||+++
T Consensus 47 ~~~~~~--d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 47 TRIGAS--DSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEeCCC--CchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 344443 3567788899999987444443 3469999999999999999988776 4556654 3 3889999999995
Q ss_pred HHHHhCCEEEEEECCEEEe
Q 008362 445 EAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 445 e~~~l~dri~il~~G~l~~ 463 (568)
+..+||+---+.++++..
T Consensus 124 -l~~~~~~~~~v~~~~~~~ 141 (185)
T smart00534 124 -LTKLADEHPGVRNLHMSA 141 (185)
T ss_pred -HHHHhhcCccceEEEEEE
Confidence 667888644445555443
No 420
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.57 E-value=6.7e-14 Score=150.57 Aligned_cols=176 Identities=20% Similarity=0.306 Sum_probs=119.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---------cHHHhhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---------DMDRIYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---------~~~~~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||+++|+|+||+|||||+++|+|+.+|+.|.|.+.|++-.. ....+++.++++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5699999 9999999999999999999999999999999999999996654321 22335678999987643
Q ss_pred CCCCCCHHHHHHH-HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHH-HHHHHHHHHcCCCCEEEEeCC
Q 008362 335 LWETLTGREHLLF-YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMK-RRLSVAISLIGNPKVVYMDEP 411 (568)
Q Consensus 335 l~~~lTv~e~l~~-~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~k-qrl~la~Al~~~p~lllLDEP 411 (568)
++.+...- +.. -.+.+.+..-|-. . =--..+++- -|- |-++++ +++|+ .
T Consensus 225 -----~~~~r~~~~~~a----------~~iAEyfr~~g~~---V-ll~~Dsltr~A~A~rEisl~---~ge~P------~ 276 (438)
T PRK07721 225 -----PALMRIKGAYTA----------TAIAEYFRDQGLN---V-MLMMDSVTRVAMAQREIGLA---VGEPP------T 276 (438)
T ss_pred -----CHHHHHHHHHHH----------HHHHHHHHHCCCc---E-EEEEeChHHHHHHHHHHHHh---cCCCC------c
Confidence 22222221 110 1122222222311 0 000111110 000 111111 22322 3
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 412 STGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~---~g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
|+|+||.....++++++++. +|. ||++.+|||++ .+||++..|.+|+++..++..+-
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHC
Confidence 78999999999999999864 475 99999999995 78999999999999999988663
No 421
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.55 E-value=3.3e-14 Score=139.79 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC-CCCCH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTG 341 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~-~~lTv 341 (568)
.+=+|++++=..+.+++|.||||+||||++|.+.. .+ +..|...... ...++|..|...-+ +..++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC----------CcEEeeeeeeeeeeCCccCh
Confidence 35566665422237999999999999999999984 33 5566544321 13467777753211 11122
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
.+++ + ++ .-+-||+++|++++.+|+++++|||++|+|+....
T Consensus 86 ~~~~---------------------------S----------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 86 SSGQ---------------------------S----------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred hhcc---------------------------c----------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 1111 0 00 23458999999999999999999999999997654
Q ss_pred H-HHHHHHHh-cC---CceEEEEcCCHHHHHHhC
Q 008362 422 N-LWNVVKRA-KQ---GRAIILTTHSMEEAEALC 450 (568)
Q Consensus 422 ~-i~~~l~~~-~~---g~tiil~tH~~~e~~~l~ 450 (568)
. ++.+++++ ++ +.++|++||+.+.++.+.
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4 46677775 33 358999999999988753
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.55 E-value=8.8e-15 Score=167.78 Aligned_cols=131 Identities=22% Similarity=0.283 Sum_probs=94.5
Q ss_pred eEEEEeCC-cEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHHHHHH
Q 008362 270 LSLALPSG-ECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGREHLL 346 (568)
Q Consensus 270 isl~i~~G-ei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~-l~~~lTv~e~l~ 346 (568)
+|+++.++ ++++|.||||+||||++|+++|. +.+..| .++|.+.. .++ ..+++.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------------CCccCCcccccc---chhhee
Confidence 78888877 99999999999999999999986 333333 14444321 111 111110
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH-HH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL-WN 425 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i-~~ 425 (568)
..+ +.. +......+++|+||+|+..+++++ .+|+++|+|||++|+||.....+ +.
T Consensus 371 --~~i-------------------~~~--~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~a 426 (771)
T TIGR01069 371 --ADI-------------------GDE--QSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAIS 426 (771)
T ss_pred --eec-------------------ChH--hHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHH
Confidence 111 000 112345678999999999998886 79999999999999999999999 56
Q ss_pred HHHHh-cCCceEEEEcCCHHHHH
Q 008362 426 VVKRA-KQGRAIILTTHSMEEAE 447 (568)
Q Consensus 426 ~l~~~-~~g~tiil~tH~~~e~~ 447 (568)
++..+ +.|.++|++||+.+...
T Consensus 427 iLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 427 ILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHHhcCCEEEEECChHHHHH
Confidence 67665 46899999999987654
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=1.4e-14 Score=142.92 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=100.3
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC--CCCceEEEECCeeCCC---cHHHhhcceEEEcCCCCCC-----
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT--RTTSGTAYVQGLDIRT---DMDRIYTSMGVCPQEDLLW----- 336 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~--~p~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~~l~----- 336 (568)
++..+.+.+ .++.|+||||+||||++.+|. .+- +..+....-...-+.. ........+...+++..-.
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 566777765 599999999999999999993 222 1211111000000000 0011122344444332211
Q ss_pred CCCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH----cCCCCEEEE
Q 008362 337 ETLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL----IGNPKVVYM 408 (568)
Q Consensus 337 ~~lTv~e~l~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllL 408 (568)
+...+...+.-- ..+.+ .....+.+.+.++..++.. ..||||||.+++||.-| ...+++++|
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~--~~~~~~~~~~~l~~~~i~~--------~~lSgGEk~~~~Lal~lA~~~~~~~p~~il 164 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKING--KKVRLKDLEELLPEVGISP--------EFLSGGEKSLVALALLLALQRYKPSPFLIL 164 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETT--EEE-HHHHHHHHHCTTTTT--------TGS-HHHHHHHHHHHHHHHHTCS--SEEEE
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence 000000000000 00111 1122355667777777642 19999999999998654 467899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 409 DEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 409 DEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
|||.++||+..++.++++|++..++.-+|++||+-+..+ .||+.+.+
T Consensus 165 DEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v 211 (220)
T PF02463_consen 165 DEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV 211 (220)
T ss_dssp ESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999999999999999877788999999976655 58887654
No 424
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.52 E-value=1.6e-14 Score=141.93 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=88.5
Q ss_pred EEEEEcCCCCcHHHHH-HHHhCCCCC-----------------CceEEEECCeeCCCcHHHhhcceEEEcCCCCC--CCC
Q 008362 279 CFGMLGPNGAGKTTFI-SMMIGITRT-----------------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLL--WET 338 (568)
Q Consensus 279 i~~LlG~NGaGKTTll-~~l~Gl~~p-----------------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l--~~~ 338 (568)
-++++|+||||||||+ +.++|..++ +.|.+.+++.|.......-....+|..+.+.. .-+
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 90 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFD 90 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEE
Confidence 4789999999999999 689998764 46888888888743211100112233333211 111
Q ss_pred CC---HHHHHHHH-hh-----------hcC--CC--chhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHH
Q 008362 339 LT---GREHLLFY-GR-----------LKN--LK--GPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAI 397 (568)
Q Consensus 339 lT---v~e~l~~~-~~-----------l~~--~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~la~ 397 (568)
+| ..+++..+ .. +-+ .. ..+......+..+..++. +. ..+..||+ +++++.||+
T Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~--e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 91 VTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ---YY--DISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE---EE--EEeCCCCCCHHHHHHHHHH
Confidence 12 11111110 00 001 00 111111122333333331 22 33444554 889999999
Q ss_pred HHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 008362 398 SLIGNPKVVYMDEPS-----TGLDPASRNNLWNVVKRAK 431 (568)
Q Consensus 398 Al~~~p~lllLDEPt-----sgLD~~~r~~i~~~l~~~~ 431 (568)
+++.+|+++++|||| +||||..++.+.+.+++++
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999 9999999999999998864
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=4.1e-14 Score=146.34 Aligned_cols=180 Identities=21% Similarity=0.274 Sum_probs=126.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc--ceEEEcC---CCCCCCCCCHHHHHHHHh
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT--SMGVCPQ---EDLLWETLTGREHLLFYG 349 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~--~ig~~~Q---~~~l~~~lTv~e~l~~~~ 349 (568)
.+|++.|++|.||-||||-+++++|-.+|.-|.-- ++-+=.+.....|. --+| +| ++.+-.-....+-..++.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~y-ftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNY-FTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhh-hhhhccccccCcCChHHHHHHHH
Confidence 48999999999999999999999999999877521 11110000000000 0011 11 111111111111122222
Q ss_pred hhcCC-----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 350 RLKNL-----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 350 ~l~~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
..+|. .....++..+++++.++|. ...++.+.+||||+-||.++|++.+.+.++.++|||++-||...|..-.
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~--~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA 253 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLN--NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAA 253 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHh--hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHH
Confidence 22221 1122233556777788886 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 425 NVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 425 ~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
..|+.+ ..++=||++.||++..+.++|-+.++..
T Consensus 254 ~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 254 ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 999985 6799999999999999999999999863
No 426
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.49 E-value=3.1e-14 Score=123.66 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=63.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHH-HhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMD-RIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~-~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+|++++|++++||+++|+||||||||||++++. +|++.++|.|+..... ..++.++++||+ +++. |++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~-ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEI-RLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchh-hHH
Confidence 46999999999999999999999999999999986 8999999999865333 345567788877 5553 999
Q ss_pred HHHHH
Q 008362 343 EHLLF 347 (568)
Q Consensus 343 e~l~~ 347 (568)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=1.9e-12 Score=127.82 Aligned_cols=138 Identities=14% Similarity=0.222 Sum_probs=91.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+.+|+++++.+|++++|.||||+||||++++++| .+.+..|..... +. -.+++..| ++-.+...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~---------~~~~~~~~---i~~~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS---------ATLSIFDS---VLTRMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc---------eEEeccce---EEEEecCc
Confidence 458999999999999999999999999999999999 677888875432 21 12333222 11111112
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|.+.- +. ++++ .+-++++-+..-+.+|+++|+|||.+|.|+.....
T Consensus 85 d~~~~-----~~----------------------------StF~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~ 130 (222)
T cd03287 85 DSIQH-----GM----------------------------STFM-VELSETSHILSNCTSRSLVILDELGRGTSTHDGIA 130 (222)
T ss_pred ccccc-----cc----------------------------chHH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHH
Confidence 22210 00 0011 11122222223356899999999999999887777
Q ss_pred H-HHHHHHh-cC-CceEEEEcCCHHHHHH
Q 008362 423 L-WNVVKRA-KQ-GRAIILTTHSMEEAEA 448 (568)
Q Consensus 423 i-~~~l~~~-~~-g~tiil~tH~~~e~~~ 448 (568)
+ +.+++.+ +. +.++|++||+.+.++.
T Consensus 131 i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 131 IAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 4 6667664 33 8899999999998754
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.40 E-value=7.2e-13 Score=148.33 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=71.4
Q ss_pred CCCChhHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 383 GKYSGGMKRRLSVAISLIGN----PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 383 ~~LSgG~kqrl~la~Al~~~----p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
..|||||+||+++|++++.. |+++|+||||+|||+..+..+.+.|+++.++++||++||+++.+. .|||+++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 36899999999999999985 699999999999999999999999999877999999999999885 7999999998
Q ss_pred CE
Q 008362 459 GS 460 (568)
Q Consensus 459 G~ 460 (568)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.40 E-value=9.9e-13 Score=151.37 Aligned_cols=148 Identities=21% Similarity=0.301 Sum_probs=103.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHHHH
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~e~l~ 346 (568)
+|+++. ..+.++.|.|||++||||++|.++... +..++| +||-... ..+.+.+++.
T Consensus 319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~--------------------~maq~G~~vpa~~~--~~i~~~~~i~ 375 (782)
T PRK00409 319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA--------------------LMAKSGLPIPANEP--SEIPVFKEIF 375 (782)
T ss_pred ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH--------------------HHHHhCCCcccCCC--ccccccceEE
Confidence 444443 345789999999999999999995321 112233 4454321 0122222221
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN- 425 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~- 425 (568)
. .+|-. +...+..+++|+||+|++.+++++ .+|+++|+|||++|+||..+..+..
T Consensus 376 --~-------------------~ig~~--~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~a 431 (782)
T PRK00409 376 --A-------------------DIGDE--QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAIS 431 (782)
T ss_pred --E-------------------ecCCc--cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHH
Confidence 1 12222 235567789999999999999998 8999999999999999999998865
Q ss_pred HHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 426 VVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 426 ~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++..+ ..|.++|++||+.+.+...+++..++ ++.+..
T Consensus 432 ile~l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 432 ILEYLRKRGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HHHHHHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 55555 46899999999999988888877665 455544
No 430
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.39 E-value=1.5e-12 Score=139.22 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=126.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.++.+.+++.|.. ...++|++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..
T Consensus 129 ~~~~r~~i~~~l~T-----GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------- 194 (432)
T PRK06793 129 HAFEREEITDVFET-----GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------- 194 (432)
T ss_pred CchheechhhccCC-----CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------
Confidence 35777888888863 25689985 99999999999999999999999999999999988776555321
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
.++.|.+...... -++.. ...=....+.|.|+|+|+..+.+.+
T Consensus 195 ---------------~ev~e~~~~~l~~------------------~gl~~-tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 ---------------REVKDFIRKELGE------------------EGMRK-SVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred ---------------ccHHHHHHHHhhh------------------cccce-eEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3566654421111 11211 1122455778999999999999988
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 401 ----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 401 ----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+++-++++|+||...|+. +++...+.+.. .|.+..+.||.. ++++|.....+|.+.+.++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch----hHHHHhccCCCcceEEEEE
Confidence 999999999999999996 88888777653 588999989853 4455555567788766554
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=8e-13 Score=157.95 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=77.3
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIG----------NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE 445 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e 445 (568)
..++++++|||||++|+++|+||+. +|+++|+||||+|||+.++..+++.|.++. .|++|++|||++++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 5678899999999999999999984 799999999999999999999999999864 68999999999999
Q ss_pred HHHhCCEEEEEECC
Q 008362 446 AEALCDRLGIFVDG 459 (568)
Q Consensus 446 ~~~l~dri~il~~G 459 (568)
.+.+||||.|++.|
T Consensus 1023 ~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1023 RERIPHRILVKKTN 1036 (1042)
T ss_pred HHhhCCEEEEEECC
Confidence 99999999999764
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.36 E-value=1.1e-12 Score=147.15 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=72.0
Q ss_pred cccCCCCChhHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 379 DKQAGKYSGGMKRRLSVAISLI----------GNPKVVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~----------~~p~lllLDEPt-sgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
+..+.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.+||++||+.+..+
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~ 541 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQ 541 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchh
Confidence 4467899999999999999987 699999999998 789999999999999988 7899999999977664
Q ss_pred HhCCEEEEEEC-CEE
Q 008362 448 ALCDRLGIFVD-GSL 461 (568)
Q Consensus 448 ~l~dri~il~~-G~l 461 (568)
.|||+++|.+ |+.
T Consensus 542 -~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 -KFDRHLKMEKVGRF 555 (562)
T ss_pred -hhhcEEEEEEECCe
Confidence 6999999986 543
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.36 E-value=5.6e-12 Score=125.46 Aligned_cols=148 Identities=23% Similarity=0.292 Sum_probs=90.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHH-HHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTF-ISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTl-l~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+.+++|.+.+++ .+++|+++.+.|+|||||||+ ++++.++.++....+++...
T Consensus 7 ~~~~~~ld~~l~g---------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e---------- 61 (230)
T PRK08533 7 ELSRDELHKRLGG---------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ---------- 61 (230)
T ss_pred EEEEeeeehhhCC---------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----------
Confidence 3667888888863 278999999999999999999 79999887654333333211
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc---
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--- 400 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--- 400 (568)
.|..+.+....++ |.. +++....=.+. ..+-. ..+|+++.++-.+.+.+-
T Consensus 62 ---------------~~~~~~~~~~~~~-g~~-------~~~~~~~~~l~---~~~~~-~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 62 ---------------LTTTEFIKQMMSL-GYD-------INKKLISGKLL---YIPVY-PLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred ---------------CCHHHHHHHHHHh-CCc-------hHHHhhcCcEE---EEEec-ccccChHHHHHHHHHHHHHHH
Confidence 2344444433222 211 11111110110 11111 235666554433333322
Q ss_pred -CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 008362 401 -GNPKVVYMDEPSTGL----DPASRNNLWNVVKRA-KQGRAIILTTHSMEE 445 (568)
Q Consensus 401 -~~p~lllLDEPtsgL----D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e 445 (568)
.+|+++++||||+++ |+..++.+++.++++ ++|.|++++ |++.+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 379999999999999 888899999999886 457766665 55543
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.35 E-value=5e-13 Score=127.14 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=66.7
Q ss_pred ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
..+....+||+++.+..+++..+.+|+++++|| |+.++|+..++.+.+++ +.|+++|+++|+ ..+...+|||..
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~-~~~~~~~~~i~~ 147 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHR-RSVHPFVQEIKS 147 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECc-hhhHHHHHHHhc
Confidence 345666799999999999999999999999999 55566665554444444 468999999999 455678999999
Q ss_pred EECCEEEee
Q 008362 456 FVDGSLQCI 464 (568)
Q Consensus 456 l~~G~l~~~ 464 (568)
+.+|++...
T Consensus 148 ~~~~~i~~~ 156 (174)
T PRK13695 148 RPGGRVYEL 156 (174)
T ss_pred cCCcEEEEE
Confidence 999998665
No 435
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.34 E-value=1.8e-11 Score=120.57 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=91.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+-+|++|+.++|++++|.||||+||||+++++++..-.. .|. .+... +..++ -.+.++..+...
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~----~~~i~---~~~~i~~~~~~~ 83 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAK----SMRLS---LVDRIFTRIGAR 83 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCcc----ccEec---cccEEEEecCcc
Confidence 46899999999999999999999999999999999863321 121 11000 01111 122333333333
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|++... . +++. .+-++++-....+.+|+++++|||.+|+||.....
T Consensus 84 d~~~~~-----~----------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 84 DDIMKG-----E----------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred cccccC-----c----------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 333210 0 0111 12233333333456899999999999999999988
Q ss_pred HHHH-HHHh-cC-CceEEEEcCCHHHHHHhC
Q 008362 423 LWNV-VKRA-KQ-GRAIILTTHSMEEAEALC 450 (568)
Q Consensus 423 i~~~-l~~~-~~-g~tiil~tH~~~e~~~l~ 450 (568)
+... ++.+ +. +.++|++||+++.+..++
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 8887 5554 33 899999999999998876
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=99.33 E-value=4.2e-12 Score=141.31 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 384 KYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
.+||||+||++||++++. +|+++|+|||++|||+..+..+.+.++++.++.+||++||++..+ .+||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999996 689999999999999999999999999987789999999999877 689999999875
Q ss_pred E
Q 008362 460 S 460 (568)
Q Consensus 460 ~ 460 (568)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.33 E-value=2.4e-12 Score=129.18 Aligned_cols=176 Identities=15% Similarity=0.192 Sum_probs=112.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--EEC--CeeCCCcHHHhhcce---EEEcCCCCCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQ--GLDIRTDMDRIYTSM---GVCPQEDLLWET 338 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i--~i~--G~~i~~~~~~~r~~i---g~~~Q~~~l~~~ 338 (568)
|+|.+ +.+.+||..+|+||+|+|||||++.+.+......+++ .+. |.. ..+..++.+.+ -++-+.+.
T Consensus 6 ~id~~-~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er-~~ev~el~~~I~~~~v~~~~~~---- 79 (249)
T cd01128 6 VVDLF-APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER-PEEVTDMQRSVKGEVIASTFDE---- 79 (249)
T ss_pred heeee-cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC-CccHHHHHHHhccEEEEecCCC----
Confidence 44443 5788999999999999999999999999887764333 322 211 11223333322 23333332
Q ss_pred CCHHHHHHHH-------h--hhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--------HHHHHHHH
Q 008362 339 LTGREHLLFY-------G--RLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--------KRRLSVAI 397 (568)
Q Consensus 339 lTv~e~l~~~-------~--~l~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--------kqrl~la~ 397 (568)
+..+..... . +-.|.. -++. .+..+..+.+.+ .....+|||+ +||+++||
T Consensus 80 -~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei-~r~a~a~~ev~~-------~~G~~~sgG~~~~~~~~~~q~~~~Ar 150 (249)
T cd01128 80 -PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSI-TRLARAYNTVVP-------PSGKILSGGVDANALHKPKRFFGAAR 150 (249)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECH-HHhhhhhhhccc-------cCCCCCCCCcChhhhhhhHHHHHHhc
Confidence 222222111 0 111211 0111 122233333333 2334479999 99999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 398 SLIGNPKVVYMDEPSTGLDPASRNN-LWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD~~~r~~-i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
++..+++|.+| ||+.+|+.+... +. +...+ .+.|.|+.||.+.+.. ..|.|.+|+.|+.
T Consensus 151 ~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr 211 (249)
T cd01128 151 NIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTR 211 (249)
T ss_pred CCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCc
Confidence 99999999999 999999755544 43 44454 5899999999999876 5899999999987
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.27 E-value=3.6e-11 Score=114.96 Aligned_cols=82 Identities=16% Similarity=0.048 Sum_probs=70.0
Q ss_pred cccccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHh-cCCceEEEEcCCHHH-
Q 008362 377 VADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLD---PASRNNLWNVVKRA-KQGRAIILTTHSMEE- 445 (568)
Q Consensus 377 ~~~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD---~~~r~~i~~~l~~~-~~g~tiil~tH~~~e- 445 (568)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.++++.+ +.|.|+|+++|+.+.
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~ 143 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLE 143 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 567888899999998 5666666778999999999999999 88888899988876 469999999998875
Q ss_pred --------HHHhCCEEEEEEC
Q 008362 446 --------AEALCDRLGIFVD 458 (568)
Q Consensus 446 --------~~~l~dri~il~~ 458 (568)
++.+||.++.|+.
T Consensus 144 ~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 144 GTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred CcccCcCceeEeeeEEEEEEE
Confidence 6788999988873
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.26 E-value=1.6e-11 Score=120.68 Aligned_cols=66 Identities=29% Similarity=0.394 Sum_probs=54.4
Q ss_pred cCCCCChhHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHH
Q 008362 381 QAGKYSGGMKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEA 446 (568)
Q Consensus 381 ~~~~LSgG~kqrl~la~Al~~~p---~lllLDEPtsgLD~~~r~~i~~~l~~~~~-g~tiil~tH~~~e~ 446 (568)
+...+|.|+||.+.++.++...+ .++++|||-++|+|..++.+.+.+++..+ +.-||+|||+...+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45667999999999988888776 89999999999999999999999988655 88999999997643
No 440
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.22 E-value=3.1e-11 Score=143.86 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=74.8
Q ss_pred ccccCCCCChhHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 378 ADKQAGKYSGGMKRRLSVAISLIG--------NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la~Al~~--------~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.++++.+|||||++|++||+||+. +|+++|+||||+|||+.+++.+++.|..+ +.|++|+++||..+.+++
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 458899999999999999999995 89999999999999999999999999987 469999999999999999
Q ss_pred hCCEEEEEEC
Q 008362 449 LCDRLGIFVD 458 (568)
Q Consensus 449 l~dri~il~~ 458 (568)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 9888888765
No 441
>PRK03918 chromosome segregation protein; Provisional
Probab=99.21 E-value=3e-11 Score=142.52 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=69.1
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 379 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 379 ~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
++++..|||||+| |+++|++++++|+++|+||||+|||+..+..+.++|... ..+.+||++||+++. ...||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678899999999 555666888999999999999999999999999999885 457899999999875 56899
Q ss_pred EEEEEEC
Q 008362 452 RLGIFVD 458 (568)
Q Consensus 452 ri~il~~ 458 (568)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999983
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.21 E-value=3.6e-11 Score=130.41 Aligned_cols=150 Identities=20% Similarity=0.311 Sum_probs=106.0
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
.++++.+..+++|++++|+||||+||||++..|++.+.+..|. ++++++.++. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHH
Confidence 3567777788899999999999999999999999987666653 2478888876 35789999
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH-HHHHHHHHcCCC-----CEEEEeCCCCCCCHH
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR-RLSVAISLIGNP-----KVVYMDEPSTGLDPA 418 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq-rl~la~Al~~~p-----~lllLDEPtsgLD~~ 418 (568)
|.+++++.|++.....+..+...+..++.+ +....+.+...+++. .+.-..+++.++ .+++||.++.+
T Consensus 305 Lr~~AeilGVpv~~~~~~~Dl~~aL~~L~d--~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~---- 378 (484)
T PRK06995 305 LRIYGKILGVPVHAVKDAADLRLALSELRN--KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG---- 378 (484)
T ss_pred HHHHHHHhCCCeeccCCchhHHHHHHhccC--CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH----
Confidence 999999988765444444555556677753 556777875444432 234455555555 68999999887
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcC
Q 008362 419 SRNNLWNVVKRAK-QGRAIILTTH 441 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~g~tiil~tH 441 (568)
..+.+.++..+ .+.+=++.|+
T Consensus 379 --~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 --DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred --HHHHHHHHHhccCCCCEEEEeC
Confidence 44555665554 3554444454
No 443
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=5.2e-11 Score=145.28 Aligned_cols=73 Identities=26% Similarity=0.346 Sum_probs=65.8
Q ss_pred cccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cCCceEEEEcCCHHHH
Q 008362 379 DKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQGRAIILTTHSMEEA 446 (568)
Q Consensus 379 ~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~------~~g~tiil~tH~~~e~ 446 (568)
....+.||||||| |++||+|++.+|++++|||||+|||+.++..+.+.|..+ ..|.+||++||+++++
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~ 1273 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFV 1273 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHH
Confidence 4455799999999 999999999999999999999999999999999988764 1378999999999999
Q ss_pred HHhCC
Q 008362 447 EALCD 451 (568)
Q Consensus 447 ~~l~d 451 (568)
..+|.
T Consensus 1274 ~~~~~ 1278 (1311)
T TIGR00606 1274 ELLGR 1278 (1311)
T ss_pred HHHhh
Confidence 99874
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=2.4e-10 Score=126.99 Aligned_cols=134 Identities=25% Similarity=0.369 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHhhhcCCCchh---HHHHHH------HHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--CCEE
Q 008362 338 TLTGREHLLFYGRLKNLKGPA---LTQAVE------ESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--PKVV 406 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~---~~~~~~------~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~--p~ll 406 (568)
.|++.|.+.|+..+. ++.++ .++.+. ..|..+||.. --.++.+.+|||||.||+-+|.-+=.+ -=++
T Consensus 428 ~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~Y-LtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 428 EMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGY-LTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCc-ccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 577888888877665 22211 111111 2355678853 236899999999999999999988655 2478
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC-CceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHhc
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRAKQ-GRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKARY 474 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~~~-g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~~ 474 (568)
+||||+.||-+.--.++.+.|+++++ |.|+|++.||-+.+. .||+|+=| +.|++++.|+++++++..
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 99999999999999999999999864 999999999987765 59999876 678999999999987643
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.15 E-value=9.4e-10 Score=128.07 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=64.3
Q ss_pred HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHH---------HhCCEEEEEECCEEEeecCH
Q 008362 399 LIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAE---------ALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 399 l~~~p~lllLDEPtsgL-D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~---------~l~dri~il~~G~l~~~g~~ 467 (568)
+.++|+++++|||+.+| ||..++.+.+.++.. ++|.+++++||+++++. ..|++.++|.+|++...|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 36899999999999999 799999999999986 56899999999999986 57999999999998777754
Q ss_pred HHHHHhcC
Q 008362 468 KELKARYG 475 (568)
Q Consensus 468 ~~l~~~~~ 475 (568)
+ ..+.+|
T Consensus 729 ~-~~~~~g 735 (818)
T PRK13830 729 E-FYERIG 735 (818)
T ss_pred H-HHHHcC
Confidence 3 334343
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.15 E-value=6e-11 Score=143.56 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=71.5
Q ss_pred cccccCCCCChhHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISL----IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al----~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
..+.++..||||||||++||+++ +.+|+++||||||+|||+..+..+.++|..+.++.+||++||+++.+ .+||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~ 1160 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQ 1160 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhh
Confidence 45678899999999999999998 46789999999999999999999999999876678999999999987 46999
Q ss_pred EEEEE
Q 008362 453 LGIFV 457 (568)
Q Consensus 453 i~il~ 457 (568)
++.+.
T Consensus 1161 ~~~~~ 1165 (1179)
T TIGR02168 1161 LYGVT 1165 (1179)
T ss_pred Heeee
Confidence 87654
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=99.15 E-value=1.1e-10 Score=137.99 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=68.0
Q ss_pred ccCCCCChhHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hcC--C-ceEEEEcCCHHHHHHh
Q 008362 380 KQAGKYSGGMKRRLSV------AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AKQ--G-RAIILTTHSMEEAEAL 449 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~l------a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~~--g-~tiil~tH~~~e~~~l 449 (568)
.++..||||||+|+++ |++++.+|++++|||||+|||+..+..+.+++.. .++ + .+||++||+++.+ ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999875 5899999999999999999999999999999975 332 3 4899999999987 57
Q ss_pred CCEEEEEE
Q 008362 450 CDRLGIFV 457 (568)
Q Consensus 450 ~dri~il~ 457 (568)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.12 E-value=8.6e-11 Score=122.04 Aligned_cols=143 Identities=17% Similarity=0.209 Sum_probs=98.5
Q ss_pred eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 270 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
+++.++.|+.+++.||+||||||++++|+|+++|..|.+.+.. ...-....+..+++..+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~--------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGG--------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCC---------------
Confidence 6688999999999999999999999999999999988887753 11100000111221111000
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
. . +++....-.++.+|-.+|+++++|||.+ .+.+++++.
T Consensus 200 ------------------------------~--~--~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a 238 (308)
T TIGR02788 200 ------------------------------Q--G--LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRA 238 (308)
T ss_pred ------------------------------C--C--cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHH
Confidence 0 0 0011112245566778999999999996 456777777
Q ss_pred hcCCc-eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 430 AKQGR-AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 430 ~~~g~-tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
...|. +++.|+|..+.. ...||+..|..|++.+.|.+.+..
T Consensus 239 ~~~g~~~~i~T~Ha~~~~-~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPE-EAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HhcCCCeEEEEEeCCCHH-HHHHHHHHHhhccccccCCCHHHH
Confidence 66654 679999999854 459999999999999888877654
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=2.6e-10 Score=105.48 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=84.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++.|.|+||+||||+++.+++...+..|.+.+.+.+..... . .+.+. ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~--~-------------------~~~~~---~~~------ 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE--L-------------------TERLI---GES------ 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH--H-------------------HHHHh---hhh------
Confidence 36899999999999999999988776666654443221110 0 01100 000
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCC----------CCCCHHHHHHHHHHHH
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS----------TGLDPASRNNLWNVVK 428 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPt----------sgLD~~~r~~i~~~l~ 428 (568)
.....+.. ..........+.+..++...+++...+|+++++|||+ ++.|+..++.+.+++.
T Consensus 51 ----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 121 (165)
T cd01120 51 ----LKGALDNL-----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLE 121 (165)
T ss_pred ----hccccccE-----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 00000111 1222333344566677888999999999999999999 4566666788888877
Q ss_pred Hhc-CCceEEEEcCCHHHHHH
Q 008362 429 RAK-QGRAIILTTHSMEEAEA 448 (568)
Q Consensus 429 ~~~-~g~tiil~tH~~~e~~~ 448 (568)
..+ .+.|+++++|.....+.
T Consensus 122 ~~~~~~~~vv~~~~~~~~~~~ 142 (165)
T cd01120 122 RARKGGVTVIFTLQVPSGDKG 142 (165)
T ss_pred HHhcCCceEEEEEecCCcccc
Confidence 765 48999999998765433
No 450
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.05 E-value=6.2e-11 Score=126.77 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=48.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRT 317 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~ 317 (568)
..||++||+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 36899999999999999999999999999999 788888888 79999999864
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=8e-10 Score=133.93 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=71.6
Q ss_pred cccccCCCCChhHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIG----NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
...+.+.+||||||+++++|++++. +|++++||||++|||+..+..+.++|.+..++..+|++||+.... .+||+
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-Hhcce
Confidence 3456678999999999999999984 789999999999999999999999999887778899999998755 68999
Q ss_pred EEEEEC
Q 008362 453 LGIFVD 458 (568)
Q Consensus 453 i~il~~ 458 (568)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987653
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.98 E-value=3.3e-09 Score=105.69 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=88.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
.+++|.++.+.|++|+||||+...++ +..+ ..+.+. |+..+ -+..+.+.-..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~------------------y~~~e------~~~~~~~~~~~~- 74 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVY------------------VITTE------NTSKSYLKQMES- 74 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEE------------------EEEcC------CCHHHHHHHHHH-
Confidence 68899999999999999999998774 2222 222332 22221 122222221111
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCCCCC---CCHHHHHHHHHH
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTG---LDPASRNNLWNV 426 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEPtsg---LD~~~r~~i~~~ 426 (568)
.|..-.+ ...+..+....+ .-......|.++++.+..++..+. +|+++++||||+. .|+...+++.+.
T Consensus 75 ~g~~~~~--~~~~g~l~i~~~-----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~ 147 (234)
T PRK06067 75 VKIDISD--FFLWGYLRIFPL-----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTE 147 (234)
T ss_pred CCCChhH--HHhCCCceEEec-----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHH
Confidence 1111100 000000111111 112234557789999999999997 9999999999964 455555555555
Q ss_pred HHHh-cCCceEEEEcCCHHH-------HHHhCCEEEEEE
Q 008362 427 VKRA-KQGRAIILTTHSMEE-------AEALCDRLGIFV 457 (568)
Q Consensus 427 l~~~-~~g~tiil~tH~~~e-------~~~l~dri~il~ 457 (568)
++.+ ++|.|+++++|...+ ++.++|-++.|+
T Consensus 148 l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 148 AKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred HHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 6554 468999999998765 344555555554
No 453
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.93 E-value=3.3e-10 Score=112.40 Aligned_cols=165 Identities=21% Similarity=0.239 Sum_probs=86.1
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~--Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
-||++ .=.+++|+++.|.|++|+||||+...++ ++ .+..+.+++..........+..+..|+.+|+....+.+.+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~ 86 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII 86 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence 45553 3478999999999999999999987554 44 45566677776433222222234566655542222222222
Q ss_pred HHHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 343 EHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 343 e~l~~----~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
|.+.. ...+.+.+.++...++.++++..+.. ..++++-.+..+++|||+ .
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~~~vvIDsl~~l~~~~~~-----~ 140 (229)
T TIGR03881 87 DALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYG---------------------HARLVIDSMSAFWLDKPA-----M 140 (229)
T ss_pred EccccccccccccccCCHHHHHHHHHHHHHhhccC---------------------ceEEEecCchhhhccChH-----H
Confidence 21100 00011122223333333333332221 022333344444445542 2
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcCCHH--------HHHHhCCEEEEEE
Q 008362 419 SRNNLWNVVKRAK-QGRAIILTTHSME--------EAEALCDRLGIFV 457 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~g~tiil~tH~~~--------e~~~l~dri~il~ 457 (568)
.|+.++++.+.++ .|.|+++++|... .++.+||.|+.|+
T Consensus 141 ~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 141 ARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3444555555444 5999999999654 3566788888776
No 454
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.91 E-value=4.6e-11 Score=131.48 Aligned_cols=160 Identities=21% Similarity=0.256 Sum_probs=106.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMM--IGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l--~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
.+++|.++.|.|++||||||+..-. .|..++.+.-+++...+-..+..+..+++|+-.|+..-- +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~------g~l~~--- 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE------GKLFI--- 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc------CceEE---
Confidence 6889999999999999999999765 566665666777776532222222234556544421100 01110
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA--ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la--~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
+.. ... ......++.+++. +..++...++|+|++|||.|+ .++...|+.. +..|+.++++++
T Consensus 88 ~~~-~~~---~~~~~~~~~~~l~--~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 88 LDA-SPD---PEGQDVVGGFDLS--ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred Eec-Cch---hccccccccCCHH--HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 000 000 0111234556664 367888889999999999999 6666655444 578899999998
Q ss_pred Hhc-CCceEEEEcCCHHH--------H-HHhCCEEEEEE
Q 008362 429 RAK-QGRAIILTTHSMEE--------A-EALCDRLGIFV 457 (568)
Q Consensus 429 ~~~-~g~tiil~tH~~~e--------~-~~l~dri~il~ 457 (568)
.++ .|+|+|++||++++ + +.+||.|+.|+
T Consensus 152 ~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 864 69999999999875 2 67899999987
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.90 E-value=1.5e-08 Score=109.52 Aligned_cols=178 Identities=19% Similarity=0.282 Sum_probs=115.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc---HHH------hhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---MDR------IYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---~~~------~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+|+.|.+...|++-+.- .+. .++.+-++.+.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~ 229 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQ 229 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCC
Confidence 5699999 99999999999999999999999999999999998877766543221 111 1222333333321
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHHcCCCCEEEEeCC--
Q 008362 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISLIGNPKVVYMDEP-- 411 (568)
Q Consensus 335 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~kqrl~la~Al~~~p~lllLDEP-- 411 (568)
++.+...-. ..--.+.+.+...|-. .--...+++- -|-+| .++ +.+.||
T Consensus 230 -----~p~~r~~~~---------~~a~t~AE~frd~G~~----Vll~~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 230 -----SPLLRLKGA---------YVATAIAEYFRDQGKD----VLLLMDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred -----CHHHHHHHH---------HHHHHHHHHHHHCCCC----EEEEEeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 233322210 0111233334333421 1111122221 11111 111 234564
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCc-------eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 412 STGLDPASRNNLWNVVKRAK-QGR-------AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~~-~g~-------tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.|.||.....+.+++.+.. .+. ||++.+||+. +.+||++..+.+|+++......+...
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~~~~ 348 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQRGH 348 (440)
T ss_pred ccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhhCCc
Confidence 56999999999999999864 456 8999999984 56899999999999999998877543
No 456
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.89 E-value=1.6e-09 Score=116.25 Aligned_cols=88 Identities=17% Similarity=0.273 Sum_probs=70.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE---EECCeeCCCcH-------HHhhcceEEEcCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---YVQGLDIRTDM-------DRIYTSMGVCPQED 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i---~i~G~~i~~~~-------~~~r~~ig~~~Q~~ 333 (568)
..|++++ +++.+||+++|+|+||+|||||+++|+|+.+|+.+.+ -.+|.++..-. ...|..++++||+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5799999 9999999999999999999999999999999986433 33443432211 11345799999999
Q ss_pred CCCCCCCHHHHHHHHhhhc
Q 008362 334 LLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 334 ~l~~~lTv~e~l~~~~~l~ 352 (568)
..+..+++.+++...+...
T Consensus 222 s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 222 SPLMRIKATELCHAIATYY 240 (434)
T ss_pred ChhhhHHHHHHHHHHHHHh
Confidence 9999999999998877654
No 457
>PRK02224 chromosome segregation protein; Provisional
Probab=98.88 E-value=3.5e-09 Score=125.11 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=67.3
Q ss_pred cCCCCChhHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCc-eEEEEcCCHHHH
Q 008362 381 QAGKYSGGMKR------RLSVAISLIGN-----P-KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGR-AIILTTHSMEEA 446 (568)
Q Consensus 381 ~~~~LSgG~kq------rl~la~Al~~~-----p-~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~-tiil~tH~~~e~ 446 (568)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|..+. .|. +||++||+++.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 88999898853 2 6799999999999999999999998864 454 899999999988
Q ss_pred HHhCCEEEEEECC
Q 008362 447 EALCDRLGIFVDG 459 (568)
Q Consensus 447 ~~l~dri~il~~G 459 (568)
. .||+++.|...
T Consensus 858 ~-~ad~~~~~~~~ 869 (880)
T PRK02224 858 G-AADDLVRVEKD 869 (880)
T ss_pred H-hcCeeEEeecC
Confidence 6 69999999754
No 458
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.84 E-value=2.7e-09 Score=103.48 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=71.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++||.||||||||||.++|.+++ ..|.+.+.+ +++. +..++..+.........+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~------------------~D~~-~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS------------------QDSY-YKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE------------------eccc-ccccccccHHHhccCCCCCCCcc
Confidence 58999999999999999999988 334443333 3321 11122222222111111212222
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
..+...+.++.+... +..+.+..++|.|++++..+ .+.+++++|+|+|..+.++.
T Consensus 60 ~~~~~~~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 223444566666553 35678888999999876655 57889999999999999873
No 459
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=8.1e-09 Score=109.59 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHH
Q 008362 384 KYSGGMKRRLSVAISLIG---------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAE 447 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~---------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~ 447 (568)
.+|.||||++.+|++|+. +|++++||||+++||+..|+.+++.|.+. |..+++|||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 699999999999999999 99999999999999999999999999754 679999999998655
No 460
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=1.3e-08 Score=109.49 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=70.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC---eeCCC---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG---LDIRT--- 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G---~~i~~--- 317 (568)
+.++.+++++.|.. ...+++.++ .+.+||+++|+||||+|||||+++|+|+.+|+.|.+.+.| .++..
T Consensus 138 ~~~~r~~v~~~l~T-----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~ 211 (450)
T PRK06002 138 PAMTRARVETGLRT-----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLE 211 (450)
T ss_pred CCeEeecceEEcCC-----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhH
Confidence 46899999999974 367999996 9999999999999999999999999999999999998864 55532
Q ss_pred -cHHHh-hcceEEEcCCCC
Q 008362 318 -DMDRI-YTSMGVCPQEDL 334 (568)
Q Consensus 318 -~~~~~-r~~ig~~~Q~~~ 334 (568)
..... ++.+++++|.+.
T Consensus 212 ~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 212 DTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHhhCCeEEEEEcCCC
Confidence 11222 357999999864
No 461
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.80 E-value=1.4e-08 Score=98.67 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=44.0
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
++++||..+|+++++|||. |++. +...++....|..++.|+|..+.++ ..||+..|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLET---IRLALTAAETGHLVMSTLHTNSAAK-TIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHHHcCCEEEEEecCCcHHH-HHhHHHhhc
Confidence 4788999999999999996 5554 3444444567999999999998765 579987664
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.80 E-value=5.1e-09 Score=100.79 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=61.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCC--CCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQE--DLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~--~~l~~~lTv~e 343 (568)
..+=+.+.+++|+.++|+||||||||||+++|+|+.+|+.|.+.+.+..-... ..+..++++.|. +...+..|..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHH
Confidence 34445567889999999999999999999999999999999999977432211 122345665554 34566778888
Q ss_pred HHHHHhhh
Q 008362 344 HLLFYGRL 351 (568)
Q Consensus 344 ~l~~~~~l 351 (568)
.+....+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88765543
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.78 E-value=1.6e-07 Score=83.51 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
++..+.|.||+|+||||+++.|+....... +-+.++...........+.
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 367899999999999999999999887655 5566655433221111101
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH------HHH
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN------VVK 428 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~------~l~ 428 (568)
. ...........+++..+..+++|--.+|+++++||+..-.+......... ...
T Consensus 51 ------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~ 110 (148)
T smart00382 51 ------------------L--IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLL 110 (148)
T ss_pred ------------------h--hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHH
Confidence 0 12233444677788888888888887899999999999999988877654 122
Q ss_pred H-hcCCceEEEEcCC
Q 008362 429 R-AKQGRAIILTTHS 442 (568)
Q Consensus 429 ~-~~~g~tiil~tH~ 442 (568)
. ...+..+|.++|.
T Consensus 111 ~~~~~~~~~i~~~~~ 125 (148)
T smart00382 111 LKSEKNLTVILTTND 125 (148)
T ss_pred HHhcCCCEEEEEeCC
Confidence 2 3457889999984
No 464
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=88.98 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=64.2
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~i 455 (568)
+..+.....|-|+-=---+.+.+- +--+.+||||-++|.|.-+-++...|+++ +.|.-+|++||+.=....=.-+|.-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~ 200 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYE 200 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEE
Confidence 345566778999977666666654 56799999999999999999999999986 5699999999997655433456666
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
++.+.
T Consensus 201 ~~~~g 205 (233)
T COG3910 201 ISESG 205 (233)
T ss_pred EecCC
Confidence 66554
No 465
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.65 E-value=6.6e-07 Score=104.94 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=49.3
Q ss_pred HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGL-DPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgL-D~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
+++++.++|+++++|||+.+| ||..++.+.+.++.. +.|.+++++||+++++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 799999999999886 568999999999998875
No 466
>PRK14079 recF recombination protein F; Provisional
Probab=98.62 E-value=7.6e-08 Score=101.73 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=63.2
Q ss_pred CCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEE
Q 008362 384 KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~ 454 (568)
.+|+||||++.+|+.|+ ++|++++||||+++||+..++.+++.+.... .++|-+|+ ....||++.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceEE
Confidence 58999999999999999 9999999999999999999999999886532 34444443 345799999
Q ss_pred EEECCEEEeec
Q 008362 455 IFVDGSLQCIG 465 (568)
Q Consensus 455 il~~G~l~~~g 465 (568)
.+.+|++.-..
T Consensus 337 ~~~~~~~~~~~ 347 (349)
T PRK14079 337 RIEAGVFTPEA 347 (349)
T ss_pred EEeccEecCCC
Confidence 99999875443
No 467
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.59 E-value=9.5e-08 Score=102.89 Aligned_cols=167 Identities=17% Similarity=0.256 Sum_probs=108.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECC---eeCCCcH-HHh---hcceEEE-----c
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQG---LDIRTDM-DRI---YTSMGVC-----P 330 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G---~~i~~~~-~~~---r~~ig~~-----~ 330 (568)
..|+|++ +.+.+||.++|+|+||+|||||+++|+|+.++ +.|.+.+.| .++..-. +.+ ..+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5699998 99999999999999999999999999999854 446676644 5553211 111 1234555 8
Q ss_pred CCCC--CCCCCCHHHHHHHHhhhcCCC---chhHHHHHHHHHHHcCCC---CCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 331 QEDL--LWETLTGREHLLFYGRLKNLK---GPALTQAVEESLKSVNLF---HGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 331 Q~~~--l~~~lTv~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~---~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
|++. +.+.+ +...+.-+.+.+|.. ..+...+..+++++++|. .......+++.+|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~--------------- 294 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST--------------- 294 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH---------------
Confidence 8762 44444 444454444445533 245667888999999993 11345666666553
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh---cCC-----ceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA---KQG-----RAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~---~~g-----~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
+-.++.+. .+| -||++..+|+++. ++|.+.-+-||+++-.-...+
T Consensus 295 --------------------l~~llERag~~~~GSITai~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~la~ 347 (442)
T PRK06315 295 --------------------LPKLLERSGASDKGTITAFYTVLVAGDDMNEP--VADEVKSILDGHIVLSNALAQ 347 (442)
T ss_pred --------------------hHHHHHHhcCCCCcceeeeEEEEecCCCCCcc--cHHHhhhhcceEEEEeccHHH
Confidence 11222221 123 2677777888754 688888888999988765544
No 468
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.55 E-value=1e-07 Score=116.36 Aligned_cols=65 Identities=20% Similarity=0.368 Sum_probs=57.1
Q ss_pred cccccCCCCChhHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 377 VADKQAGKYSGGMKRRLS----VAIS--------LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~----la~A--------l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
..++.++.||||||||++ +|++ +..+|++++|||||+|+|+..++.+++++.++ |.++|+|||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 456668999999999996 4644 55899999999999999999999999999887 78899999975
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.55 E-value=2.9e-07 Score=92.12 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=38.2
Q ss_pred HcCCCCEEEEeCCCC------CCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHH
Q 008362 399 LIGNPKVVYMDEPST------GLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEE 445 (568)
Q Consensus 399 l~~~p~lllLDEPts------gLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e 445 (568)
...+|+++++| |++ ..|+..++.+.+.+.++ + .|.+||+++|....
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~ 161 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKG 161 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcc
Confidence 35899999999 765 47999999999998875 3 48999999998654
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.54 E-value=6.1e-08 Score=92.56 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
+||+++++|+|||||||++++|+|++.| +.++|.++.......+...|+.+|+...++..++.++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999887 588998875432222223566666654444444444443
No 471
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.53 E-value=2.8e-07 Score=109.22 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=67.5
Q ss_pred cccCCCCChhHHHHHHHHHHH------cCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh
Q 008362 379 DKQAGKYSGGMKRRLSVAISL------IGN--PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL 449 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al------~~~--p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l 449 (568)
-+++.+||||++-.++||.|| .++ -+.++|||||..||+..++.+.++|..+. .+++|+++||+-+..+ .
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~ 888 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R 888 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence 378899999999977776665 466 69999999999999999999999999874 5899999999976665 5
Q ss_pred CCEEEEEECC
Q 008362 450 CDRLGIFVDG 459 (568)
Q Consensus 450 ~dri~il~~G 459 (568)
+|+++.+...
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 8887777643
No 472
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.50 E-value=9.6e-08 Score=97.92 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.++||.||||||||||.++|.+++. |++|+|.+-+.|-.......++..|+. |.....+.+++.+.+.+...++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 5999999999999999999999988 788998886666433333344456654 7667778899999888877765
No 473
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.50 E-value=1e-07 Score=103.96 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=94.4
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE-EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
-||.+ .=.+.+|+++.|.|++|+|||||+..++.......+. +++.+++...+.....+++|+..+
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~------------ 149 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP------------ 149 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH------------
Confidence 35554 2379999999999999999999999887765554444 566765432111111122332111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCC--------
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGL-------- 415 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgL-------- 415 (568)
++.+.. ... .+++++ .+ --.+|+++++|.-++=.
T Consensus 150 ~l~~~~------e~~----~~~I~~--------------------------~i--~~~~~~~vVIDSIq~l~~~~~~~~~ 191 (454)
T TIGR00416 150 NLYVLS------ETN----WEQICA--------------------------NI--EEENPQACVIDSIQTLYSPDISSAP 191 (454)
T ss_pred HeEEcC------CCC----HHHHHH--------------------------HH--HhcCCcEEEEecchhhcccccccCC
Confidence 111100 000 011110 00 11478999999754311
Q ss_pred -CHHHHHHHHHHHHH-hc-CCceEEEEcCCHHH--------HHHhCCEEEEEECCEEEeecCHHHHHHhcCC
Q 008362 416 -DPASRNNLWNVVKR-AK-QGRAIILTTHSMEE--------AEALCDRLGIFVDGSLQCIGNPKELKARYGG 476 (568)
Q Consensus 416 -D~~~r~~i~~~l~~-~~-~g~tiil~tH~~~e--------~~~l~dri~il~~G~l~~~g~~~~l~~~~~~ 476 (568)
++...+++...|.+ .+ .|.|+++++|...+ ++.+||.|+.|+.++.........+|++++.
T Consensus 192 g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~~~~~R~L~v~K~R~g~ 263 (454)
T TIGR00416 192 GSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGA 263 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccCCCcEEEEEEecCCCCC
Confidence 12233444444444 34 59999999997765 6889999999987765444556667888774
No 474
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.50 E-value=3.2e-06 Score=98.87 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=45.4
Q ss_pred HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 398 SLIGNPKVVYMDEPSTGLD-PASRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 398 Al~~~p~lllLDEPtsgLD-~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.+.++|+++++|||..+|| |..++.+.+.++.. +.|.+++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4678999999999999999 99999999999886 568999999999988654
No 475
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.50 E-value=5e-07 Score=102.19 Aligned_cols=110 Identities=24% Similarity=0.335 Sum_probs=76.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--------EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSG--------TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--------~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
..+.+.|+||||+||||+.+++.+..++..| -+.++|.++..+...+ ++-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i--------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV--------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH--------------------hHHhc
Confidence 4567999999999999999999998876544 3666665442211111 01111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
.. ..+...+...+.++.+|+. +..+..+.++||| +|+||| +..||+..+..+.+.+
T Consensus 234 -g~----~~~~~~~~a~~~l~~~gl~--~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 234 -GS----VHDPIYQGARRDLAETGVP--EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred -CC----ccHHHHHHHHHHHHHcCCC--chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 00 1112223455567888886 3678889999999 999999 7999999999999998
Q ss_pred HH
Q 008362 428 KR 429 (568)
Q Consensus 428 ~~ 429 (568)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 65
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.49 E-value=7.4e-07 Score=104.30 Aligned_cols=146 Identities=21% Similarity=0.260 Sum_probs=90.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-CCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-RTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+-+|+++. +.+.+..|.|||++||||++|.++-.. -+.-| .+||=... .+.+.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G--------------------~~VPa~~a---~i~~~d 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG--------------------SFVPAESA---RIGIVD 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC--------------------Cceeccce---EecccC
Confidence 466788888 778899999999999999999986421 11111 12332211 011111
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCC---CCCCCHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEP---STGLDPA 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEP---tsgLD~~ 418 (568)
.+ +-++|- .|.....+|.-|.....++.+|-. +++++|+||| |+.+|..
T Consensus 652 ~I---------------------~triga-----~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 652 RI---------------------FTRIGA-----SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred ee---------------------eeccCc-----ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 11 111221 233444567666666666666554 8999999999 8888843
Q ss_pred HHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 419 SRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 419 ~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
...|.+++.+. . +.++|++||+ .++..++++.--+.+..+.+
T Consensus 706 --aia~aile~l~~~~~~~~l~aTH~-~el~~l~~~~~~v~n~~m~~ 749 (854)
T PRK05399 706 --SIAWAVAEYLHDKIGAKTLFATHY-HELTELEEKLPGVKNVHVAV 749 (854)
T ss_pred --HHHHHHHHHHHhcCCceEEEEech-HHHHHHhhhcCCeEEEEEEE
Confidence 45677776653 3 5899999999 55666787643334444433
No 477
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.48 E-value=5.2e-07 Score=109.44 Aligned_cols=144 Identities=18% Similarity=0.247 Sum_probs=86.1
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
=++++.++++++||+|++|+|||||++.+.+. ....+|.+++++..+...... +-.+... + .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~------~~~~~~~--~-----~~~~~ 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI------YSSANPD--D-----YNMKL 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh------ccccccc--c-----cchhH
Confidence 35677889999999999999999999999554 445689999876433211100 0011100 0 01111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
. ..++.+.++++..++. +..+ ++.|+|+ .+++-+|+||+- |. ...|+.+
T Consensus 266 ~---------l~~~~l~~il~~~~~~--------~~~~-~~~~~~L------~~krvLLVLDdv----~~---~~~l~~L 314 (1153)
T PLN03210 266 H---------LQRAFLSEILDKKDIK--------IYHL-GAMEERL------KHRKVLIFIDDL----DD---QDVLDAL 314 (1153)
T ss_pred H---------HHHHHHHHHhCCCCcc--------cCCH-HHHHHHH------hCCeEEEEEeCC----CC---HHHHHHH
Confidence 0 0112334444444432 1222 5666663 466778888984 32 3456666
Q ss_pred HHh----cCCceEEEEcCCHHHHHHh-CCEEEEE
Q 008362 428 KRA----KQGRAIILTTHSMEEAEAL-CDRLGIF 456 (568)
Q Consensus 428 ~~~----~~g~tiil~tH~~~e~~~l-~dri~il 456 (568)
... ..|.+||+|||+.+.+... +|+++-+
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 542 3588999999999988765 6776655
No 478
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.47 E-value=7e-08 Score=89.13 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 360 TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 360 ~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A-----l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
..++.+.++..+..- -....++..+|++++++...... ....++++ |+|++|+...+++++.|.+
T Consensus 99 ~~~~~~~l~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 99 DLEMLDWLEELGIPF-LVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred HHHHHHHHHHcCCCE-EEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 344556666666431 12445577789998887765554 24556666 9999999999999999875
No 479
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.46 E-value=1.9e-07 Score=92.89 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE----EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGT----AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~----i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
+..++||.||||||||||.++|++++++++|. +.+++... ....+...|++++.+ ..+.+++.+...+...+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999998 44444322 223344568887744 34567888877776665
Q ss_pred c
Q 008362 352 K 352 (568)
Q Consensus 352 ~ 352 (568)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 4
No 480
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.42 E-value=1.1e-07 Score=91.38 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH--HHHHHcC-CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS--VAISLIG-NPKVVYMDEPSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~--la~Al~~-~p~lllLDEPtsgLD~~~r~~i~~~l~~~ 430 (568)
.++.+.++..++.- -..-.++..+|+|++|++. ++..+-. +++++ |+|++|+.+.+++.+.|.++
T Consensus 125 ~~i~~~l~~~~~~~-iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 125 LQMIEWLKEYGIPV-LIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred HHHHHHHHHcCCcE-EEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHH
Confidence 34555666666531 2445677889999999877 5555533 34443 99999999999999999874
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.41 E-value=4.2e-07 Score=88.44 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++|++++|+||+|||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.35 E-value=3.5e-06 Score=88.95 Aligned_cols=123 Identities=20% Similarity=0.186 Sum_probs=75.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
..++.++.+.||+||||||+++.+.+.++ +..|.|...+.++... .....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~---~~~~~~~i~q~-------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV---HRNKRSLINQR-------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh---ccCccceEEcc--------------------
Confidence 35688999999999999999999998665 4456665443222100 00000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ 432 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~ 432 (568)
.++.. ..+ -.-++++||-.+|+++++||+. |+.+.... ++....
T Consensus 176 ----------------evg~~--------~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~aa~t 219 (343)
T TIGR01420 176 ----------------EVGLD--------TLS------FANALRAALREDPDVILIGEMR---DLETVELA---LTAAET 219 (343)
T ss_pred ----------------ccCCC--------CcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HHHHHc
Confidence 01110 000 1223667888999999999997 88776543 334567
Q ss_pred CceEEEEcCCHHHHHHhCCEEEEE
Q 008362 433 GRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 433 g~tiil~tH~~~e~~~l~dri~il 456 (568)
|.+++.|.|..+... ..+|+.-|
T Consensus 220 Gh~v~~T~Ha~~~~~-~~~Rl~~~ 242 (343)
T TIGR01420 220 GHLVFGTLHTNSAAQ-TIERIIDV 242 (343)
T ss_pred CCcEEEEEcCCCHHH-HHHHHHHh
Confidence 999999999976654 45776544
No 483
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.30 E-value=6e-07 Score=93.56 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=55.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-------HHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-------MDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-------~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|.... ....+..+++++|.....+..++.+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999889999998887431 1123566899998755555445556554
No 484
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.29 E-value=1.4e-07 Score=97.26 Aligned_cols=150 Identities=21% Similarity=0.415 Sum_probs=0.0
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhceeEeeccchHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Q 008362 2 MKMHGLGDGPYWLISYAYFFCISSIYMLCFVVFGSVIGLRFFTLNSYGIQFVFYIIYINLQIALAFLVAALFSNVKTASV 81 (568)
Q Consensus 2 m~~mGl~~~~yWl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~i~~~~l~S~~F~~~~~a~~ 81 (568)
|+++|++++.||++++++.++++++..++++++ +++...++..++..+++++++|+++.+++++++|.+|++++.|..
T Consensus 194 l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~ 271 (344)
T PF12698_consen 194 LLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAIS 271 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 679999999999999988887766555444332 333222333466667788999999999999999999999988875
Q ss_pred HHHhHHh-hhhHHHHHHHHhhccCCCcchhhhhhhcccchhHHHHHHHHHHhhhhccccCCCCCCccccCCCCccchHHH
Q 008362 82 IGYICVF-GTGLLGAFLLQSFVEDPSFPRRWITAMELYPGFALYRGLYEFGTYSFRGHSMGTDGMSWADLSDSENGMKEV 160 (568)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (568)
++.++.+ ..+....+ +. .. ..+..+..+..++|.+.+..++..+.. +. |.. ....
T Consensus 272 ~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~i~~~~P~~~~~~~~~~~~~-----------~~-~~~-------~~~~ 327 (344)
T PF12698_consen 272 VASIIILLLSFLSGGF-FP--LS--SLPSFLQWISSFLPFYWFIQGLRNIIY-----------GD-WSE-------IWIS 327 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHH-Hh--HH--hhHHHHHHHHHHhhHHHHHHHHHHHHH-----------hc-HHH-------HHHH
Confidence 5544433 22111111 11 11 122333345668899988777765531 11 111 2245
Q ss_pred HHHHHHHHHHHHHHHHH
Q 008362 161 LIIMFVEWLLLLGIAYY 177 (568)
Q Consensus 161 ~~~~~~~~~l~~~l~~y 177 (568)
++++++.+++|+++++|
T Consensus 328 ~~~l~~~~~v~~~l~~~ 344 (344)
T PF12698_consen 328 LIILLLFAVVYLLLAIL 344 (344)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77788889999998876
No 485
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.28 E-value=1.5e-06 Score=85.92 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=43.8
Q ss_pred CCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCC---------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDE-----PSTGLDPASRNNLWNVVKRAK-QGRAIILTTHS---------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDE-----PtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~---------~~e~~~l~dri~il~ 457 (568)
.+++.+++|= |+.+.|+..++.+.++++.++ .|.|+++++|. +..++.+||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 3688899993 344556667788888888864 59999999995 344788999999994
No 486
>PRK08149 ATP synthase SpaL; Validated
Probab=98.28 E-value=1.2e-06 Score=94.15 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=58.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc---eEEEECCeeCCCcHHH-----hhcceEEEcCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS---GTAYVQGLDIRTDMDR-----IYTSMGVCPQED 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~---G~i~i~G~~i~~~~~~-----~r~~ig~~~Q~~ 333 (568)
..+++++ +.+.+||+++|+|+||+|||||+++|++...++. |.|...|.++..-.++ .++++++++...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 5799999 9999999999999999999999999999999987 9999999987542222 235778887654
No 487
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.28 E-value=6.3e-07 Score=92.27 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=61.6
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhhc-ceEEEcCCCCC---C-CC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYT-SMGVCPQEDLL---W-ET 338 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r~-~ig~~~Q~~~l---~-~~ 338 (568)
++.+...+. +++++++|+||+|||||+|.|.|...++.|++.. .|...+.....++. ..|++.+.|.+ . ..
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~ 230 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLH 230 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCcc
Confidence 344444454 5899999999999999999999999999999976 45444433333332 36899998876 3 46
Q ss_pred CCHHHHHHHHhhh
Q 008362 339 LTGREHLLFYGRL 351 (568)
Q Consensus 339 lTv~e~l~~~~~l 351 (568)
++..|...++..+
T Consensus 231 ~~~~~~~~~f~~~ 243 (287)
T cd01854 231 IDPEELAHYFPEF 243 (287)
T ss_pred CCHHHHHHHhHHH
Confidence 8888888776544
No 488
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.28 E-value=1.3e-06 Score=74.03 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=40.1
Q ss_pred ccccCCCCChhHHH-HHHHHH------HHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 378 ADKQAGKYSGGMKR-RLSVAI------SLIG------NPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 378 ~~~~~~~LSgG~kq-rl~la~------Al~~------~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
..+..+++|||||| .+.+|. .+-. .|++++||||+++||+..++.+.+++++
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35788999999995 333333 3333 3799999999999999999999999864
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.27 E-value=3.1e-07 Score=89.85 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
++|+++||.||||||||||++.|+|++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 490
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=1.8e-06 Score=91.46 Aligned_cols=73 Identities=19% Similarity=0.419 Sum_probs=54.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
..++++.++.+++|++++|+||||+|||||+..|++......|. ++++++..+.. .....|
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~----------------~~V~lit~D~~---R~ga~E 184 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA----------------SKVALLTTDSY---RIGGHE 184 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC----------------CeEEEEecccc---cccHHH
Confidence 34677888889999999999999999999999999854222221 34677776543 236788
Q ss_pred HHHHHhhhcCCC
Q 008362 344 HLLFYGRLKNLK 355 (568)
Q Consensus 344 ~l~~~~~l~~~~ 355 (568)
++..|++..|.+
T Consensus 185 qL~~~a~~~gv~ 196 (374)
T PRK14722 185 QLRIFGKILGVP 196 (374)
T ss_pred HHHHHHHHcCCc
Confidence 998887766543
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=4.4e-06 Score=95.22 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=52.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
++++.++.+++|++++++||||+||||++..|++.+....|. ++++++..+.. .....|.+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~----------------kkV~lit~Dt~---RigA~eQL 234 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGA----------------DQLALLTTDSF---RIGALEQL 234 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCC----------------CeEEEecCccc---chHHHHHH
Confidence 567778888889999999999999999999999987654441 23566655531 23467888
Q ss_pred HHHhhhcCCC
Q 008362 346 LFYGRLKNLK 355 (568)
Q Consensus 346 ~~~~~l~~~~ 355 (568)
..++...+++
T Consensus 235 ~~~a~~~gvp 244 (767)
T PRK14723 235 RIYGRILGVP 244 (767)
T ss_pred HHHHHhCCCC
Confidence 8887776653
No 492
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.24 E-value=1.3e-06 Score=93.92 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=57.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~ 314 (568)
+.++.+++++.+.. ...+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~t-----Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMT-----GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCC-----Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 35778888888853 36799999 9999999999999999999999999999999999988877764
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.22 E-value=2.1e-06 Score=89.29 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=99.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH------hhcceEEEcCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR------IYTSMGVCPQEDL 334 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~------~r~~ig~~~Q~~~ 334 (568)
..+++++ +.+.+||.++|+|+||+|||||+++|+|...|+.|.+..-|++-+. -.+. +.+.+-++.+.+
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d- 134 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSD- 134 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCC-
Confidence 5799999 9999999999999999999999999999999999988887754322 1111 122344444433
Q ss_pred CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCC--C
Q 008362 335 LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP--S 412 (568)
Q Consensus 335 l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEP--t 412 (568)
.++.++..-.. . .- .+.+.+...|-+ . ---..+++ | .|+|+-- =-+.+.|| .
T Consensus 135 ----~~~~~r~~~~~-~-------a~-~~AEyfr~~g~~---V-ll~~Dslt-----r--~a~A~re--i~~~~ge~p~~ 188 (326)
T cd01136 135 ----ESPLLRVKAAY-T-------AT-AIAEYFRDQGKD---V-LLLMDSLT-----R--FAMAQRE--IGLAAGEPPTT 188 (326)
T ss_pred ----CCHHHHHHHHH-H-------HH-HHHHHHHHcCCC---e-EEEeccch-----H--HHHHHHH--HHHhcCCCCCc
Confidence 24444443210 0 00 112222222321 0 00111111 1 2222100 01224454 6
Q ss_pred CCCCHHHHHHHHHHHHHhc---CC-ceEEEEcC----CHHHHHHhCCEEEEEECCEEEeecCHHH
Q 008362 413 TGLDPASRNNLWNVVKRAK---QG-RAIILTTH----SMEEAEALCDRLGIFVDGSLQCIGNPKE 469 (568)
Q Consensus 413 sgLD~~~r~~i~~~l~~~~---~g-~tiil~tH----~~~e~~~l~dri~il~~G~l~~~g~~~~ 469 (568)
.|.+|..-..+-+++.+.. .| .|.+-+-. ||+ +.++|.+.-+-||+++..-...+
T Consensus 189 ~gyp~~~~~~~~~l~ERag~~~~GSIT~i~tv~~~gdd~~--dpi~~~~~~~~dg~ivL~r~la~ 251 (326)
T cd01136 189 KGYPPSVFALLPRLLERAGNSDKGSITAFYTVLVEGDDLN--EPIADAVRSILDGHIVLSRALAA 251 (326)
T ss_pred CCcChHHHHHhHHHHHHhcCCCCCCeeeeeeeeecCCCCC--cchHHhhhhccceEEEEcCcHHH
Confidence 7888888888888887642 34 45554332 222 34566666777888887655443
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.21 E-value=1.5e-06 Score=83.58 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQE 332 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~ 332 (568)
|++++|+|||||||||++++|++...| .+.+.+..+... ....+..+++.+|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998876 577777766432 12233445555554
No 495
>PRK01889 GTPase RsgA; Reviewed
Probab=98.21 E-value=2.5e-06 Score=90.44 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=62.6
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
-++.+.-.+++|++++++|+||+|||||++.|+|...|+.|+|.++|..... ...++.+++++|...+++. .+..++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555566678999999999999999999999999999999999998754321 1234679999998888764 556565
Q ss_pred HHH
Q 008362 346 LFY 348 (568)
Q Consensus 346 ~~~ 348 (568)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 553
No 496
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.20 E-value=2.4e-06 Score=90.92 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-EECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-~i~G~~ 314 (568)
.+.+|+++.|.|++|+|||||+..++.......|.+ ++.+++
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 689999999999999999999999987766554555 455543
No 497
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.19 E-value=2e-06 Score=82.85 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH--HHHhCCEEEEEECC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE--AEALCDRLGIFVDG 459 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e--~~~l~dri~il~~G 459 (568)
|+-+|..||.++..+|+.+..+| +.+||..++++++.+.+.. +|.+|++.+|.+.+ ...+||++++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 88899999999999999988877 8999999999999998764 46899999999976 77889999887654
No 498
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.16 E-value=3.4e-06 Score=90.66 Aligned_cols=64 Identities=23% Similarity=0.495 Sum_probs=44.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKN 353 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~ 353 (568)
+++|++++|+||||+|||||++.|+|...-..| ...+|++..+.. .....|.+..++++.|
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~----------------~~~v~~i~~d~~---rigalEQL~~~a~ilG 248 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG----------------ADKVALLTTDSY---RIGGHEQLRIYGKLLG 248 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------CCeEEEEecCCc---chhHHHHHHHHHHHcC
Confidence 468999999999999999999999985311111 012455555442 2367788888888777
Q ss_pred CCc
Q 008362 354 LKG 356 (568)
Q Consensus 354 ~~~ 356 (568)
++.
T Consensus 249 vp~ 251 (420)
T PRK14721 249 VSV 251 (420)
T ss_pred Cce
Confidence 653
No 499
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.15 E-value=1.7e-06 Score=95.01 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=57.1
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
..|+++.||+ +.+++++++.+..|+.++++||||+||||+++.|.|+++|.+|+..+++..+.
T Consensus 187 ~~d~~~v~Gq------~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVIGQ------EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEECc------HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 4588999973 56999999999999999999999999999999999999999999999886653
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.13 E-value=1e-05 Score=72.47 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCceEEEEcCCHH
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK------QGRAIILTTHSME 444 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~------~g~tiil~tH~~~ 444 (568)
++......+...++.++++||.-.. ++.....+.+.+.... .+..+|++|++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4555666677788999999998765 6667778888887742 4778999998765
Done!