Query 008362
Match_columns 568
No_of_seqs 487 out of 3458
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 00:25:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.5E-56 5E-61 468.9 29.2 227 243-473 22-254 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 8.3E-56 2.8E-60 462.9 28.4 221 245-473 4-229 (359)
3 1vpl_A ABC transporter, ATP-bi 100.0 2.2E-55 7.5E-60 441.9 30.0 224 243-474 13-237 (256)
4 2olj_A Amino acid ABC transpor 100.0 4.1E-55 1.4E-59 441.5 30.8 222 244-473 23-249 (263)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.4E-55 4.8E-60 447.5 26.5 222 244-472 6-233 (275)
6 1b0u_A Histidine permease; ABC 100.0 5.1E-55 1.8E-59 441.0 29.3 222 244-473 5-243 (262)
7 3rlf_A Maltose/maltodextrin im 100.0 2.9E-55 1E-59 461.8 28.1 220 245-473 3-224 (381)
8 3tif_A Uncharacterized ABC tra 100.0 1.1E-54 3.7E-59 431.8 26.5 223 245-471 1-233 (235)
9 2pcj_A ABC transporter, lipopr 100.0 2.6E-54 8.8E-59 426.2 28.9 214 244-466 3-222 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 2.1E-54 7.1E-59 452.4 29.2 222 243-473 12-236 (355)
11 2it1_A 362AA long hypothetical 100.0 4.5E-54 1.5E-58 451.3 29.3 220 245-473 3-224 (362)
12 2yyz_A Sugar ABC transporter, 100.0 2.5E-54 8.4E-59 452.8 27.3 220 245-473 3-224 (359)
13 1g6h_A High-affinity branched- 100.0 2.3E-54 7.9E-59 435.2 25.1 218 244-469 6-239 (257)
14 1ji0_A ABC transporter; ATP bi 100.0 8.3E-54 2.8E-58 426.9 28.6 220 244-472 5-228 (240)
15 4g1u_C Hemin import ATP-bindin 100.0 1E-53 3.5E-58 432.3 29.5 218 244-471 10-236 (266)
16 1g29_1 MALK, maltose transport 100.0 8.1E-54 2.8E-58 451.6 28.8 221 245-473 3-230 (372)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2.7E-54 9.3E-59 452.4 24.9 221 245-473 3-231 (353)
18 1v43_A Sugar-binding transport 100.0 8.6E-54 2.9E-58 450.7 27.4 220 245-473 11-232 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-53 4E-58 446.3 26.6 216 245-473 1-218 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 1.1E-53 3.9E-58 425.6 22.9 215 245-473 1-217 (240)
21 2yz2_A Putative ABC transporte 100.0 1.2E-52 4E-57 424.8 25.7 225 245-475 2-230 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.6E-52 5.4E-57 426.2 22.4 220 244-471 20-251 (279)
23 2zu0_C Probable ATP-dependent 100.0 2E-51 6.7E-56 416.0 27.3 224 243-473 18-255 (267)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 1.5E-51 5.3E-56 412.9 23.3 219 245-470 3-231 (250)
25 2ixe_A Antigen peptide transpo 100.0 4.6E-51 1.6E-55 414.0 26.5 221 244-473 15-246 (271)
26 2ff7_A Alpha-hemolysin translo 100.0 2.8E-51 9.5E-56 410.3 24.2 218 244-473 6-233 (247)
27 2nq2_C Hypothetical ABC transp 100.0 1.2E-50 4.1E-55 407.0 27.0 207 245-471 4-216 (253)
28 3nh6_A ATP-binding cassette SU 100.0 1.3E-50 4.3E-55 416.5 25.8 217 244-473 52-278 (306)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.3E-50 7.8E-55 403.8 24.9 209 245-471 4-221 (249)
30 2pjz_A Hypothetical protein ST 100.0 1.9E-50 6.5E-55 407.4 22.9 214 245-473 1-216 (263)
31 1mv5_A LMRA, multidrug resista 100.0 7.5E-51 2.6E-55 406.3 18.4 215 245-473 1-227 (243)
32 1sgw_A Putative ABC transporte 100.0 1.2E-50 3.9E-55 396.9 16.8 202 243-461 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 2.4E-49 8.2E-54 399.1 25.0 218 244-473 16-243 (260)
34 3gd7_A Fusion complex of cysti 100.0 2.3E-49 8E-54 419.4 19.5 214 244-473 18-243 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.5E-48 5.1E-53 386.3 23.1 205 244-473 5-219 (229)
36 2cbz_A Multidrug resistance-as 100.0 5.2E-48 1.8E-52 384.2 21.4 207 245-473 3-218 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 1.1E-46 3.8E-51 420.8 25.5 219 244-473 340-568 (582)
38 4a82_A Cystic fibrosis transme 100.0 7.5E-47 2.6E-51 421.7 23.7 218 244-473 338-565 (578)
39 2yl4_A ATP-binding cassette SU 100.0 1.1E-46 3.9E-51 421.7 24.4 220 246-473 342-571 (595)
40 3b60_A Lipid A export ATP-bind 100.0 1.2E-46 4.2E-51 420.4 24.6 219 244-473 340-568 (582)
41 3qf4_A ABC transporter, ATP-bi 100.0 1.9E-46 6.3E-51 419.0 25.5 218 244-473 340-567 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 1.2E-46 4.1E-51 421.6 20.4 217 244-473 353-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 3.2E-45 1.1E-49 374.2 20.9 199 244-472 39-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 8.2E-44 2.8E-48 429.1 20.7 224 244-476 1075-1308(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 2.7E-42 9.3E-47 414.9 24.5 220 244-474 386-615 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 1.8E-42 6.2E-47 416.5 21.8 222 244-474 1029-1260(1284)
47 4f4c_A Multidrug resistance pr 100.0 4.3E-42 1.5E-46 414.1 24.2 220 244-474 414-643 (1321)
48 3bk7_A ABC transporter ATP-bin 100.0 2.6E-41 9E-46 377.2 22.7 205 243-472 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-41 9.6E-46 372.9 20.4 205 243-472 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 6.6E-41 2.3E-45 369.3 21.0 206 243-471 267-476 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 8.3E-40 2.8E-44 365.1 14.5 198 245-459 83-304 (607)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-39 4.2E-44 359.8 13.7 197 246-459 21-234 (538)
53 3j16_B RLI1P; ribosome recycli 100.0 4.3E-39 1.5E-43 358.9 18.1 201 249-472 350-559 (608)
54 2iw3_A Elongation factor 3A; a 100.0 4.4E-39 1.5E-43 371.5 17.1 207 243-466 669-981 (986)
55 2iw3_A Elongation factor 3A; a 100.0 4.9E-38 1.7E-42 362.7 25.4 200 244-472 434-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-38 5.7E-43 360.3 15.8 204 264-472 31-298 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 3.3E-36 1.1E-40 335.6 16.9 201 245-460 69-298 (608)
58 3ux8_A Excinuclease ABC, A sub 100.0 5.6E-36 1.9E-40 339.6 18.7 200 264-472 335-640 (670)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-36 3.9E-41 335.6 10.8 192 249-459 3-213 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 6.8E-34 2.3E-38 325.4 17.3 212 243-473 500-828 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 1.5E-33 5E-38 323.2 18.7 211 244-473 628-943 (972)
62 3pih_A Uvrabc system protein A 100.0 6.6E-33 2.3E-37 319.7 21.7 201 265-473 598-903 (916)
63 2ygr_A Uvrabc system protein A 100.0 8.6E-33 2.9E-37 317.9 18.6 211 244-473 646-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.4E-36 4.6E-41 328.8 -15.5 197 243-471 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 2.1E-31 7.3E-36 284.8 18.1 197 265-464 49-380 (415)
66 3b85_A Phosphate starvation-in 100.0 1.7E-32 5.7E-37 267.2 -8.5 147 263-448 12-163 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 4.7E-28 1.6E-32 255.3 18.8 84 379-463 274-364 (365)
68 1e69_A Chromosome segregation 99.9 1.2E-27 4.2E-32 247.9 15.7 190 269-461 17-301 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 8.7E-31 3E-35 279.0 -12.8 174 264-459 36-254 (413)
70 4gp7_A Metallophosphoesterase; 99.9 3E-28 1E-32 229.6 4.1 146 269-448 1-164 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 4E-31 1.4E-35 256.7 -16.2 176 263-457 8-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 3.1E-28 1.1E-32 231.3 2.0 147 279-463 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 2.7E-27 9.2E-32 243.1 -0.8 175 266-461 89-284 (302)
74 2dpy_A FLII, flagellum-specifi 99.9 5.1E-28 1.7E-32 260.3 -9.7 196 244-473 130-345 (438)
75 2v9p_A Replication protein E1; 99.9 1.4E-29 4.9E-34 259.4 -21.9 167 245-474 101-268 (305)
76 2og2_A Putative signal recogni 99.9 1E-25 3.5E-30 236.0 1.4 173 268-461 148-341 (359)
77 2obl_A ESCN; ATPase, hydrolase 99.9 1.9E-26 6.4E-31 241.1 -5.9 196 244-472 44-255 (347)
78 1z6g_A Guanylate kinase; struc 99.9 2.9E-28 1E-32 238.8 -20.0 177 264-454 10-205 (218)
79 2o5v_A DNA replication and rep 99.9 3.8E-23 1.3E-27 216.7 15.1 86 379-470 259-354 (359)
80 3sop_A Neuronal-specific septi 99.9 4.6E-26 1.6E-30 230.4 -7.1 149 279-445 4-152 (270)
81 1tf7_A KAIC; homohexamer, hexa 99.9 7E-27 2.4E-31 257.8 -15.1 181 245-459 12-210 (525)
82 1cr0_A DNA primase/helicase; R 99.9 3.9E-24 1.3E-28 218.4 4.4 183 264-461 22-237 (296)
83 2o8b_B DNA mismatch repair pro 99.9 3.7E-24 1.3E-28 250.7 4.8 173 244-469 749-939 (1022)
84 3aez_A Pantothenate kinase; tr 99.9 2.3E-26 8E-31 237.2 -13.1 182 243-460 41-246 (312)
85 2pt7_A CAG-ALFA; ATPase, prote 99.9 9.3E-25 3.2E-29 227.0 -2.1 132 266-461 160-292 (330)
86 2jeo_A Uridine-cytidine kinase 99.9 4.1E-24 1.4E-28 212.7 1.0 176 263-474 11-189 (245)
87 4ad8_A DNA repair protein RECN 99.9 2.3E-22 7.8E-27 221.3 13.6 80 380-460 392-474 (517)
88 3pih_A Uvrabc system protein A 99.9 9.9E-23 3.4E-27 235.2 10.4 160 291-472 382-560 (916)
89 3qkt_A DNA double-strand break 99.9 9.6E-22 3.3E-26 205.1 16.5 79 378-457 242-327 (339)
90 2ehv_A Hypothetical protein PH 99.9 8.5E-24 2.9E-28 209.1 -0.3 164 273-458 26-207 (251)
91 1tf7_A KAIC; homohexamer, hexa 99.8 6.1E-22 2.1E-26 218.3 7.6 154 271-460 275-444 (525)
92 3thx_A DNA mismatch repair pro 99.8 3.1E-22 1.1E-26 232.0 3.2 168 245-470 631-811 (934)
93 2r6f_A Excinuclease ABC subuni 99.8 1.5E-20 5.2E-25 215.8 13.5 131 338-472 451-600 (972)
94 2vf7_A UVRA2, excinuclease ABC 99.8 1.7E-20 6E-25 214.8 11.2 180 285-472 270-475 (842)
95 2qnr_A Septin-2, protein NEDD5 99.8 1.5E-22 5.1E-27 207.8 -5.8 163 249-444 2-168 (301)
96 2eyu_A Twitching motility prot 99.8 9.6E-22 3.3E-26 197.7 0.2 132 265-458 15-147 (261)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 5.8E-20 2E-24 169.0 11.2 83 378-461 51-142 (148)
98 2ygr_A Uvrabc system protein A 99.8 4.3E-20 1.5E-24 212.8 11.8 133 336-472 466-617 (993)
99 1w1w_A Structural maintenance 99.8 3.7E-19 1.3E-23 191.3 17.7 77 380-457 329-410 (430)
100 1ewq_A DNA mismatch repair pro 99.8 6.9E-21 2.4E-25 217.0 3.6 146 264-466 566-718 (765)
101 4a74_A DNA repair and recombin 99.8 2.1E-21 7.2E-26 189.5 -1.6 148 273-460 21-201 (231)
102 3thx_B DNA mismatch repair pro 99.8 6.6E-21 2.2E-25 220.3 1.9 154 263-463 659-816 (918)
103 3szr_A Interferon-induced GTP- 99.8 5.8E-22 2E-26 221.8 -7.8 190 245-470 10-235 (608)
104 3asz_A Uridine kinase; cytidin 99.8 2.5E-22 8.4E-27 194.4 -11.1 145 274-444 3-162 (211)
105 1s96_A Guanylate kinase, GMP k 99.8 4.7E-21 1.6E-25 187.7 -4.5 146 272-474 11-162 (219)
106 2i3b_A HCR-ntpase, human cance 99.8 1.3E-21 4.3E-26 187.5 -8.8 159 277-465 1-169 (189)
107 1rj9_A FTSY, signal recognitio 99.8 1.1E-20 3.9E-25 193.9 -3.1 149 276-443 101-258 (304)
108 1wb9_A DNA mismatch repair pro 99.8 6.8E-20 2.3E-24 209.9 2.8 154 264-466 595-752 (800)
109 2w0m_A SSO2452; RECA, SSPF, un 99.8 3.2E-19 1.1E-23 173.8 7.0 169 264-460 9-193 (235)
110 1pui_A ENGB, probable GTP-bind 99.7 1.1E-20 3.6E-25 181.9 -6.9 178 245-435 3-202 (210)
111 2bdt_A BH3686; alpha-beta prot 99.7 9.6E-23 3.3E-27 194.1 -22.3 173 277-472 2-184 (189)
112 2qag_C Septin-7; cell cycle, c 99.7 6.7E-20 2.3E-24 195.7 -3.1 165 244-444 10-178 (418)
113 1pzn_A RAD51, DNA repair and r 99.7 7.7E-20 2.6E-24 191.4 -2.6 163 265-466 118-309 (349)
114 1nlf_A Regulatory protein REPA 99.7 6.7E-18 2.3E-22 170.9 6.7 153 273-447 26-185 (279)
115 3jvv_A Twitching mobility prot 99.7 1.4E-18 4.6E-23 182.1 1.1 135 265-459 104-246 (356)
116 1lw7_A Transcriptional regulat 99.7 4E-22 1.4E-26 209.9 -26.7 176 267-472 158-355 (365)
117 1zp6_A Hypothetical protein AT 99.7 7.8E-20 2.7E-24 173.7 -13.0 152 273-441 5-159 (191)
118 3kta_B Chromosome segregation 99.7 4.4E-16 1.5E-20 146.7 12.8 83 377-460 57-145 (173)
119 1n0w_A DNA repair protein RAD5 99.6 3.3E-17 1.1E-21 161.0 3.7 146 273-460 20-210 (243)
120 2cvh_A DNA repair and recombin 99.6 5.5E-17 1.9E-21 157.0 4.9 154 264-460 6-186 (220)
121 2qm8_A GTPase/ATPase; G protei 99.6 4.6E-20 1.6E-24 192.2 -18.1 173 245-430 29-258 (337)
122 1nij_A Hypothetical protein YJ 99.6 6.5E-20 2.2E-24 189.6 -17.3 160 278-451 5-197 (318)
123 2ewv_A Twitching motility prot 99.6 1.8E-17 6.1E-22 174.9 0.2 130 266-457 127-257 (372)
124 2bbw_A Adenylate kinase 4, AK4 99.6 1.4E-18 4.6E-23 172.6 -8.4 142 276-431 26-197 (246)
125 1htw_A HI0065; nucleotide-bind 99.6 1.1E-18 3.8E-23 162.2 -9.2 90 248-349 10-99 (158)
126 2qag_B Septin-6, protein NEDD5 99.6 1.2E-17 4.2E-22 177.7 -4.0 179 245-442 16-218 (427)
127 2rcn_A Probable GTPase ENGC; Y 99.6 3.4E-16 1.2E-20 163.4 6.1 122 266-399 205-328 (358)
128 2yhs_A FTSY, cell division pro 99.6 5.3E-18 1.8E-22 182.9 -8.5 157 267-445 283-450 (503)
129 2gza_A Type IV secretion syste 99.6 1.5E-16 5.3E-21 167.1 0.1 137 267-460 165-303 (361)
130 3e70_C DPA, signal recognition 99.6 2.9E-16 1E-20 162.6 1.8 144 274-442 126-278 (328)
131 2oap_1 GSPE-2, type II secreti 99.6 7E-18 2.4E-22 184.6 -11.7 173 264-451 247-458 (511)
132 2yv5_A YJEQ protein; hydrolase 99.6 1.3E-16 4.5E-21 163.6 -2.3 122 273-397 161-300 (302)
133 3auy_A DNA double-strand break 99.5 2.2E-14 7.6E-19 151.1 12.1 77 380-457 276-359 (371)
134 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 1.7E-17 5.9E-22 175.4 -12.5 168 273-467 16-208 (392)
135 3ec2_A DNA replication protein 99.5 2.2E-15 7.6E-20 141.9 1.7 112 272-446 33-146 (180)
136 1sxj_E Activator 1 40 kDa subu 99.5 2.3E-14 7.8E-19 149.0 7.5 136 280-445 39-176 (354)
137 1in4_A RUVB, holliday junction 99.5 1.3E-17 4.4E-22 173.4 -17.8 175 246-452 19-211 (334)
138 2kjq_A DNAA-related protein; s 99.5 8.2E-15 2.8E-19 134.6 2.7 92 265-442 29-124 (149)
139 1p9r_A General secretion pathw 99.5 4.3E-17 1.5E-21 174.1 -14.8 148 246-408 144-315 (418)
140 2f1r_A Molybdopterin-guanine d 99.5 3.3E-16 1.1E-20 147.4 -8.8 136 278-433 3-163 (171)
141 1sq5_A Pantothenate kinase; P- 99.4 5.7E-16 1.9E-20 159.3 -9.6 140 244-417 36-199 (308)
142 1u0l_A Probable GTPase ENGC; p 99.4 2.6E-15 8.8E-20 153.9 -5.9 111 272-387 164-294 (301)
143 3lda_A DNA repair protein RAD5 99.4 4.4E-14 1.5E-18 150.0 2.9 153 266-460 166-364 (400)
144 1udx_A The GTP-binding protein 99.4 1.9E-14 6.5E-19 153.5 -0.5 166 267-453 147-319 (416)
145 1odf_A YGR205W, hypothetical 3 99.4 9.1E-15 3.1E-19 149.0 -3.3 127 276-418 30-168 (290)
146 1t9h_A YLOQ, probable GTPase E 99.4 1.5E-14 5E-19 148.3 -4.3 118 272-392 168-303 (307)
147 2x8a_A Nuclear valosin-contain 99.3 2.6E-16 8.9E-21 159.2 -18.3 145 264-428 33-191 (274)
148 1lvg_A Guanylate kinase, GMP k 99.3 1.8E-16 6.3E-21 152.4 -20.6 152 275-457 2-172 (198)
149 3tr0_A Guanylate kinase, GMP k 99.3 2.7E-13 9.1E-18 129.7 0.2 126 271-411 1-127 (205)
150 2px0_A Flagellar biosynthesis 99.3 6.8E-12 2.3E-16 128.1 9.3 139 275-463 103-246 (296)
151 2dr3_A UPF0273 protein PH0284; 99.2 6.8E-13 2.3E-17 130.2 0.2 172 265-459 10-197 (247)
152 3c8u_A Fructokinase; YP_612366 99.2 2.2E-14 7.4E-19 138.7 -10.4 156 274-474 19-183 (208)
153 3lnc_A Guanylate kinase, GMP k 99.2 3.7E-16 1.3E-20 153.4 -23.6 178 264-454 14-206 (231)
154 1ls1_A Signal recognition part 99.2 4E-11 1.4E-15 122.3 11.0 138 247-437 78-216 (295)
155 1vma_A Cell division protein F 99.2 8.7E-12 3E-16 127.8 5.5 111 270-429 97-210 (306)
156 3euj_A Chromosome partition pr 99.2 8.8E-12 3E-16 134.8 3.4 52 264-316 17-68 (483)
157 2r6a_A DNAB helicase, replicat 99.0 8.9E-11 3E-15 126.8 4.6 175 264-461 190-401 (454)
158 2zr9_A Protein RECA, recombina 99.0 2.9E-10 1E-14 118.6 8.1 144 273-466 57-237 (349)
159 2ius_A DNA translocase FTSK; n 99.0 6.8E-12 2.3E-16 136.6 -4.8 174 269-456 159-362 (512)
160 1ixz_A ATP-dependent metallopr 99.0 7E-13 2.4E-17 131.7 -12.9 143 264-427 38-198 (254)
161 1qhl_A Protein (cell division 99.0 1.1E-11 3.8E-16 121.6 -4.2 74 245-332 9-91 (227)
162 3k1j_A LON protease, ATP-depen 99.0 1.1E-11 3.7E-16 138.8 -5.8 165 249-429 38-227 (604)
163 1iy2_A ATP-dependent metallopr 99.0 4.5E-13 1.5E-17 135.2 -15.5 132 249-405 53-190 (278)
164 1oix_A RAS-related protein RAB 99.0 2.8E-11 9.5E-16 114.8 -2.8 134 279-429 31-188 (191)
165 1svm_A Large T antigen; AAA+ f 98.8 1.2E-11 4.2E-16 130.1 -11.3 138 264-413 156-312 (377)
166 2f9l_A RAB11B, member RAS onco 98.8 9.6E-11 3.3E-15 111.5 -6.0 35 393-429 130-164 (199)
167 4eun_A Thermoresistant glucoki 98.7 5.6E-10 1.9E-14 106.8 -1.7 67 266-336 18-84 (200)
168 2qtf_A Protein HFLX, GTP-bindi 98.7 1.5E-09 5.2E-14 113.8 -0.1 136 279-429 181-350 (364)
169 1jjv_A Dephospho-COA kinase; P 98.6 3.4E-09 1.2E-13 101.4 0.3 136 279-474 4-141 (206)
170 3cr8_A Sulfate adenylyltranfer 98.6 2.1E-09 7.4E-14 118.3 -3.7 91 273-371 365-468 (552)
171 4e22_A Cytidylate kinase; P-lo 98.6 7.1E-09 2.4E-13 103.0 0.0 59 275-333 25-96 (252)
172 1zu4_A FTSY; GTPase, signal re 98.6 1.3E-08 4.6E-13 104.7 1.8 78 267-344 95-183 (320)
173 2xau_A PRE-mRNA-splicing facto 98.5 5.6E-08 1.9E-12 111.5 6.6 74 379-452 185-261 (773)
174 3hr8_A Protein RECA; alpha and 98.5 8.2E-08 2.8E-12 100.1 7.1 72 273-346 57-129 (356)
175 3kta_A Chromosome segregation 98.5 3.1E-08 1.1E-12 92.6 3.3 137 266-429 14-168 (182)
176 2e87_A Hypothetical protein PH 98.5 7.3E-08 2.5E-12 100.6 6.2 126 277-446 167-295 (357)
177 2j41_A Guanylate kinase; GMP, 98.5 3.7E-08 1.3E-12 93.7 3.4 35 272-306 1-35 (207)
178 3a00_A Guanylate kinase, GMP k 98.5 2.6E-08 9E-13 94.0 1.7 32 277-308 1-32 (186)
179 2dhr_A FTSH; AAA+ protein, hex 98.5 2E-09 7E-14 117.1 -7.6 141 265-426 54-212 (499)
180 3uie_A Adenylyl-sulfate kinase 98.5 3.4E-09 1.2E-13 101.2 -5.3 61 249-316 3-65 (200)
181 2ce7_A Cell division protein F 98.4 1.1E-07 3.6E-12 103.0 5.1 61 387-447 93-168 (476)
182 2www_A Methylmalonic aciduria 98.4 1.8E-08 6.3E-13 105.0 -0.9 43 275-317 72-114 (349)
183 3nwj_A ATSK2; P loop, shikimat 98.4 1.5E-08 5.2E-13 100.7 -1.8 53 244-301 16-72 (250)
184 2dy1_A Elongation factor G; tr 98.4 9.2E-08 3.1E-12 108.0 4.1 133 271-446 3-139 (665)
185 3t34_A Dynamin-related protein 98.4 4.7E-09 1.6E-13 109.7 -7.0 173 264-441 24-212 (360)
186 1knq_A Gluconate kinase; ALFA/ 98.3 3.9E-08 1.3E-12 91.4 -2.9 39 275-317 6-44 (175)
187 3kl4_A SRP54, signal recogniti 98.3 2E-06 6.7E-11 91.9 9.8 125 276-443 96-224 (433)
188 1fnn_A CDC6P, cell division co 98.3 5.6E-07 1.9E-11 93.8 5.5 50 400-450 123-176 (389)
189 1kgd_A CASK, peripheral plasma 98.1 6.9E-07 2.4E-11 83.7 2.2 35 276-310 4-39 (180)
190 1ega_A Protein (GTP-binding pr 98.1 1.1E-07 3.7E-12 97.0 -3.9 154 276-454 7-170 (301)
191 2vp4_A Deoxynucleoside kinase; 98.1 1.1E-06 3.7E-11 85.8 2.4 39 273-315 16-54 (230)
192 1rz3_A Hypothetical protein rb 98.1 7E-07 2.4E-11 85.2 0.8 43 274-316 19-61 (201)
193 3vaa_A Shikimate kinase, SK; s 98.0 1.8E-06 6.2E-11 82.1 3.3 39 263-301 11-49 (199)
194 1sxj_C Activator 1 40 kDa subu 98.0 1.7E-08 5.7E-13 104.5 -12.0 50 264-313 31-82 (340)
195 4a1f_A DNAB helicase, replicat 98.0 4.3E-06 1.5E-10 86.5 5.5 128 264-440 33-163 (338)
196 3tqc_A Pantothenate kinase; bi 98.0 4.9E-07 1.7E-11 92.9 -1.8 58 249-312 64-129 (321)
197 3tau_A Guanylate kinase, GMP k 98.0 3.4E-06 1.2E-10 80.9 3.6 29 275-303 6-34 (208)
198 3ney_A 55 kDa erythrocyte memb 98.0 2.8E-06 9.7E-11 81.2 2.9 32 271-302 13-44 (197)
199 2qby_A CDC6 homolog 1, cell di 97.9 2.6E-06 8.8E-11 88.3 2.7 29 276-304 44-72 (386)
200 1cke_A CK, MSSA, protein (cyti 97.9 7.8E-07 2.7E-11 85.9 -2.1 57 277-333 5-74 (227)
201 2ffh_A Protein (FFH); SRP54, s 97.9 2.7E-05 9.4E-10 82.9 9.2 59 249-317 80-138 (425)
202 2p67_A LAO/AO transport system 97.9 1.2E-06 4E-11 91.0 -1.8 65 246-316 31-95 (341)
203 2qt1_A Nicotinamide riboside k 97.8 1.2E-05 4.1E-10 76.6 4.1 32 271-302 15-46 (207)
204 2z43_A DNA repair and recombin 97.8 1.7E-05 5.8E-10 81.5 5.3 134 273-446 103-261 (324)
205 2z4s_A Chromosomal replication 97.8 3.6E-06 1.2E-10 90.3 -0.1 42 401-442 193-236 (440)
206 3m6a_A ATP-dependent protease 97.7 2.9E-06 9.8E-11 93.5 -1.1 76 249-331 87-163 (543)
207 3lxx_A GTPase IMAP family memb 97.7 0.0002 6.8E-09 69.7 11.1 41 401-441 111-154 (239)
208 3b9p_A CG5977-PA, isoform A; A 97.7 0.0001 3.6E-09 73.9 9.3 58 387-444 98-170 (297)
209 1j8m_F SRP54, signal recogniti 97.6 0.00016 5.5E-09 73.4 10.1 60 249-317 78-138 (297)
210 1v5w_A DMC1, meiotic recombina 97.6 4.3E-05 1.5E-09 79.2 5.6 28 273-300 118-145 (343)
211 1mky_A Probable GTP-binding pr 97.6 3E-05 1E-09 83.0 4.3 70 278-347 181-263 (439)
212 1kag_A SKI, shikimate kinase I 97.6 2.6E-05 8.9E-10 71.7 2.5 28 276-303 3-30 (173)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 4.3E-05 1.5E-09 69.4 3.8 31 268-299 15-45 (149)
214 2pez_A Bifunctional 3'-phospho 97.5 1.8E-05 6.2E-10 73.5 0.6 40 275-315 3-44 (179)
215 1ypw_A Transitional endoplasmi 97.5 5.4E-05 1.8E-09 87.2 4.0 32 272-303 233-264 (806)
216 3cf0_A Transitional endoplasmi 97.4 0.00024 8.2E-09 71.9 8.2 29 273-301 45-73 (301)
217 1u94_A RECA protein, recombina 97.4 0.00039 1.3E-08 72.4 9.6 36 265-300 49-86 (356)
218 4fcw_A Chaperone protein CLPB; 97.4 0.00013 4.5E-09 73.5 5.9 32 277-308 47-78 (311)
219 3k53_A Ferrous iron transport 97.4 1.9E-05 6.5E-10 78.8 -1.2 45 411-455 144-190 (271)
220 4eaq_A DTMP kinase, thymidylat 97.3 6.9E-05 2.4E-09 73.1 2.4 45 266-311 12-59 (229)
221 1m2o_B GTP-binding protein SAR 97.3 0.00016 5.4E-09 67.7 4.5 34 265-299 12-45 (190)
222 1m7g_A Adenylylsulfate kinase; 97.3 3.3E-05 1.1E-09 73.9 -0.4 42 273-314 21-64 (211)
223 1f6b_A SAR1; gtpases, N-termin 97.3 5.4E-05 1.9E-09 71.5 1.1 35 264-299 13-47 (198)
224 3bh0_A DNAB-like replicative h 97.2 0.00021 7.3E-09 73.0 5.2 132 264-442 55-190 (315)
225 2gj8_A MNME, tRNA modification 97.2 0.00023 8E-09 65.4 4.8 26 276-301 3-28 (172)
226 3ice_A Transcription terminati 97.2 4.1E-05 1.4E-09 80.0 -0.6 52 245-301 133-198 (422)
227 2qag_A Septin-2, protein NEDD5 97.2 3.5E-05 1.2E-09 80.4 -1.3 57 245-313 17-73 (361)
228 1sxj_D Activator 1 41 kDa subu 97.2 3.6E-06 1.2E-10 86.5 -8.8 43 401-444 132-174 (353)
229 3llm_A ATP-dependent RNA helic 97.2 0.00011 3.8E-09 71.5 2.0 147 273-449 72-226 (235)
230 3qks_A DNA double-strand break 97.1 0.00023 7.8E-09 68.0 3.8 30 268-298 15-44 (203)
231 2wji_A Ferrous iron transport 97.0 0.00059 2E-08 62.0 5.5 25 279-303 5-29 (165)
232 1njg_A DNA polymerase III subu 97.0 0.0014 4.7E-08 62.2 8.4 43 401-444 125-167 (250)
233 2ohf_A Protein OLA1, GTP-bindi 97.0 0.0003 1E-08 74.1 3.9 41 273-313 18-69 (396)
234 2yvu_A Probable adenylyl-sulfa 97.0 0.00014 4.7E-09 67.9 1.1 37 273-309 9-45 (186)
235 2wjg_A FEOB, ferrous iron tran 97.0 0.00039 1.3E-08 64.2 4.1 22 279-300 9-30 (188)
236 2q6t_A DNAB replication FORK h 97.0 0.00079 2.7E-08 72.0 6.7 173 264-458 187-397 (444)
237 2v1u_A Cell division control p 96.9 0.0009 3.1E-08 69.0 6.2 27 276-302 43-69 (387)
238 3t61_A Gluconokinase; PSI-biol 96.9 0.00014 4.9E-09 68.7 0.0 35 277-315 18-52 (202)
239 2w58_A DNAI, primosome compone 96.9 0.0011 3.9E-08 62.3 6.2 25 278-302 55-79 (202)
240 3auy_A DNA double-strand break 96.9 0.00098 3.4E-08 69.5 6.1 32 266-298 15-46 (371)
241 1l8q_A Chromosomal replication 96.8 0.0011 3.9E-08 67.4 6.2 41 401-441 97-139 (324)
242 3bos_A Putative DNA replicatio 96.8 0.00063 2.2E-08 65.2 3.6 27 276-302 51-77 (242)
243 2if2_A Dephospho-COA kinase; a 96.8 0.0005 1.7E-08 64.9 2.7 21 279-299 3-23 (204)
244 1y63_A LMAJ004144AAA protein; 96.8 0.00063 2.2E-08 63.4 3.2 32 269-300 2-33 (184)
245 2qor_A Guanylate kinase; phosp 96.6 0.0008 2.7E-08 63.8 3.1 29 274-302 9-37 (204)
246 3h4m_A Proteasome-activating n 96.6 0.0025 8.5E-08 63.3 6.6 27 275-301 49-75 (285)
247 3dm5_A SRP54, signal recogniti 96.6 0.018 6.3E-07 61.3 13.5 33 276-308 99-131 (443)
248 1np6_A Molybdopterin-guanine d 96.6 0.00072 2.5E-08 63.1 2.3 37 278-314 7-46 (174)
249 2zej_A Dardarin, leucine-rich 96.6 0.0011 3.6E-08 61.4 3.3 26 279-304 4-29 (184)
250 2ga8_A Hypothetical 39.9 kDa p 96.5 0.0003 1E-08 72.9 -1.1 37 265-301 10-48 (359)
251 3n70_A Transport activator; si 96.5 0.0072 2.5E-07 53.9 8.0 43 403-446 77-120 (145)
252 1lv7_A FTSH; alpha/beta domain 96.4 0.0013 4.4E-08 64.5 2.7 44 267-314 37-80 (257)
253 1xp8_A RECA protein, recombina 96.3 0.01 3.6E-07 61.7 9.5 27 273-299 70-96 (366)
254 2p5t_B PEZT; postsegregational 96.3 0.0011 3.9E-08 65.1 2.0 41 273-315 28-68 (253)
255 3cm0_A Adenylate kinase; ATP-b 96.3 0.0017 5.9E-08 60.0 3.1 25 275-299 2-26 (186)
256 1q3t_A Cytidylate kinase; nucl 96.3 0.0018 6.1E-08 62.9 3.2 27 274-300 13-39 (236)
257 1ypw_A Transitional endoplasmi 96.3 0.00044 1.5E-08 79.6 -1.5 32 270-301 504-535 (806)
258 1jal_A YCHF protein; nucleotid 96.2 0.0032 1.1E-07 65.6 4.5 36 277-312 2-48 (363)
259 2r8r_A Sensor protein; KDPD, P 96.0 0.00024 8.2E-09 69.0 -4.5 43 399-441 81-125 (228)
260 3ihw_A Centg3; RAS, centaurin, 96.0 0.0066 2.3E-07 56.2 5.3 28 279-306 22-54 (184)
261 4ag6_A VIRB4 ATPase, type IV s 96.0 0.002 6.7E-08 67.6 1.9 47 401-447 261-311 (392)
262 3d8b_A Fidgetin-like protein 1 95.9 0.016 5.6E-07 59.8 8.5 26 276-301 116-141 (357)
263 1fzq_A ADP-ribosylation factor 95.9 0.0037 1.3E-07 57.6 3.3 22 279-300 18-39 (181)
264 2chg_A Replication factor C sm 95.9 0.03 1E-06 52.1 9.7 42 401-443 101-142 (226)
265 2b8t_A Thymidine kinase; deoxy 95.9 0.012 4.2E-07 56.9 7.0 52 401-457 88-150 (223)
266 3r20_A Cytidylate kinase; stru 95.9 0.0016 5.4E-08 63.6 0.7 25 276-300 8-32 (233)
267 3zvl_A Bifunctional polynucleo 95.8 0.035 1.2E-06 58.7 10.7 26 274-299 255-280 (416)
268 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.024 8.2E-07 55.1 8.7 25 276-300 38-62 (262)
269 3kb2_A SPBC2 prophage-derived 95.8 0.0045 1.5E-07 56.1 3.2 23 279-301 3-25 (173)
270 3io5_A Recombination and repai 95.7 0.021 7.3E-07 58.1 8.1 28 273-301 25-53 (333)
271 3cmw_A Protein RECA, recombina 95.7 0.015 5.3E-07 71.2 8.1 34 273-306 728-761 (1706)
272 1q57_A DNA primase/helicase; d 95.6 0.14 4.8E-06 55.3 14.8 35 265-299 230-264 (503)
273 1qhx_A CPT, protein (chloramph 95.6 0.0067 2.3E-07 55.5 3.6 26 277-302 3-28 (178)
274 4dcu_A GTP-binding protein ENG 95.6 0.0085 2.9E-07 64.2 5.0 56 388-446 88-144 (456)
275 1kht_A Adenylate kinase; phosp 95.6 0.007 2.4E-07 55.8 3.5 24 277-300 3-26 (192)
276 3syl_A Protein CBBX; photosynt 95.6 0.063 2.1E-06 53.6 10.9 42 402-443 130-179 (309)
277 3lw7_A Adenylate kinase relate 95.5 0.0069 2.3E-07 54.7 3.3 19 279-297 3-21 (179)
278 2rhm_A Putative kinase; P-loop 95.5 0.0066 2.2E-07 56.2 3.1 25 275-299 3-27 (193)
279 1vht_A Dephospho-COA kinase; s 95.5 0.0076 2.6E-07 57.3 3.6 24 276-299 3-26 (218)
280 1gtv_A TMK, thymidylate kinase 95.5 0.002 7E-08 60.9 -0.5 30 279-308 2-31 (214)
281 1gvn_B Zeta; postsegregational 95.4 0.0076 2.6E-07 60.5 3.5 35 276-312 32-66 (287)
282 2ze6_A Isopentenyl transferase 95.4 0.0069 2.3E-07 59.6 3.0 23 279-301 3-25 (253)
283 1uf9_A TT1252 protein; P-loop, 95.4 0.007 2.4E-07 56.5 2.9 31 277-312 8-38 (203)
284 2jaq_A Deoxyguanosine kinase; 95.3 0.0092 3.2E-07 55.6 3.3 23 279-301 2-24 (205)
285 1via_A Shikimate kinase; struc 95.2 0.0082 2.8E-07 55.0 2.7 23 279-301 6-28 (175)
286 1ex7_A Guanylate kinase; subst 95.2 0.0095 3.3E-07 56.0 3.1 22 280-301 4-25 (186)
287 3trf_A Shikimate kinase, SK; a 95.1 0.012 3.9E-07 54.3 3.5 25 276-300 4-28 (185)
288 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.024 8.3E-07 57.8 6.1 33 267-299 113-145 (331)
289 2v54_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 54.9 3.6 26 276-301 3-28 (204)
290 3iij_A Coilin-interacting nucl 95.1 0.01 3.5E-07 54.6 3.0 25 275-299 9-33 (180)
291 1ly1_A Polynucleotide kinase; 95.1 0.012 4E-07 53.7 3.3 22 278-299 3-24 (181)
292 3b1v_A Ferrous iron uptake tra 95.1 0.011 3.8E-07 58.9 3.4 23 279-301 5-27 (272)
293 1xjc_A MOBB protein homolog; s 95.1 0.0066 2.2E-07 56.2 1.6 26 278-303 5-30 (169)
294 3cmu_A Protein RECA, recombina 95.1 0.048 1.6E-06 67.8 9.5 36 265-300 369-406 (2050)
295 2plr_A DTMP kinase, probable t 95.0 0.013 4.6E-07 54.8 3.6 27 276-302 3-29 (213)
296 2erx_A GTP-binding protein DI- 95.0 0.021 7E-07 51.0 4.6 22 279-300 5-26 (172)
297 2lkc_A Translation initiation 94.9 0.03 1E-06 50.5 5.7 26 276-301 7-32 (178)
298 1tev_A UMP-CMP kinase; ploop, 94.9 0.014 4.8E-07 53.9 3.5 24 276-299 2-25 (196)
299 2c95_A Adenylate kinase 1; tra 94.9 0.014 4.7E-07 54.1 3.4 26 275-300 7-32 (196)
300 3co5_A Putative two-component 94.9 0.034 1.2E-06 49.4 5.7 38 403-441 76-114 (143)
301 3iby_A Ferrous iron transport 94.9 0.014 4.9E-07 57.4 3.6 23 279-301 3-25 (256)
302 2wwf_A Thymidilate kinase, put 94.8 0.015 5E-07 54.8 3.4 26 275-300 8-33 (212)
303 1z0j_A RAB-22, RAS-related pro 94.8 0.017 5.7E-07 51.6 3.7 23 279-301 8-30 (170)
304 2ged_A SR-beta, signal recogni 94.8 0.012 4.1E-07 54.2 2.7 24 279-302 50-73 (193)
305 3cbq_A GTP-binding protein REM 94.8 0.014 4.6E-07 54.6 3.1 22 279-300 25-46 (195)
306 1ko7_A HPR kinase/phosphatase; 94.8 0.023 7.9E-07 57.8 4.9 35 264-299 132-166 (314)
307 2dby_A GTP-binding protein; GD 94.8 0.013 4.3E-07 61.2 3.0 21 280-300 4-24 (368)
308 3q72_A GTP-binding protein RAD 94.8 0.013 4.5E-07 52.3 2.8 23 280-302 5-27 (166)
309 1nn5_A Similar to deoxythymidy 94.7 0.016 5.6E-07 54.5 3.4 27 274-300 6-32 (215)
310 2nzj_A GTP-binding protein REM 94.7 0.016 5.5E-07 52.1 3.2 23 279-301 6-28 (175)
311 1qvr_A CLPB protein; coiled co 94.7 0.03 1E-06 64.7 6.1 35 278-312 589-624 (854)
312 2vli_A Antibiotic resistance p 94.6 0.013 4.6E-07 53.6 2.5 25 276-300 4-28 (183)
313 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.16 5.5E-06 51.5 10.9 26 276-301 44-69 (322)
314 3ake_A Cytidylate kinase; CMP 94.6 0.015 5.2E-07 54.4 2.9 23 279-301 4-26 (208)
315 3tw8_B RAS-related protein RAB 94.6 0.017 5.9E-07 52.1 3.0 23 279-301 11-33 (181)
316 3lxw_A GTPase IMAP family memb 94.6 0.017 5.8E-07 56.5 3.1 56 389-445 89-151 (247)
317 1moz_A ARL1, ADP-ribosylation 94.5 0.011 3.9E-07 53.7 1.8 22 278-299 19-40 (183)
318 3q85_A GTP-binding protein REM 94.5 0.018 6.3E-07 51.5 3.1 22 280-301 5-26 (169)
319 2ce2_X GTPase HRAS; signaling 94.5 0.015 5.3E-07 51.4 2.5 22 279-300 5-26 (166)
320 1z2a_A RAS-related protein RAB 94.5 0.022 7.4E-07 50.8 3.5 22 279-300 7-28 (168)
321 1kao_A RAP2A; GTP-binding prot 94.5 0.017 5.8E-07 51.2 2.7 22 279-300 5-26 (167)
322 2z0h_A DTMP kinase, thymidylat 94.5 0.02 6.8E-07 53.1 3.3 23 279-301 2-24 (197)
323 1nks_A Adenylate kinase; therm 94.5 0.019 6.5E-07 52.8 3.1 23 279-301 3-25 (194)
324 2dyk_A GTP-binding protein; GT 94.5 0.017 5.9E-07 51.1 2.7 23 279-301 3-25 (161)
325 1u8z_A RAS-related protein RAL 94.4 0.018 6E-07 51.2 2.7 22 279-300 6-27 (168)
326 3cmw_A Protein RECA, recombina 94.4 0.15 5.2E-06 62.5 11.6 35 265-299 369-405 (1706)
327 1svi_A GTP-binding protein YSX 94.4 0.018 6E-07 53.1 2.7 22 279-300 25-46 (195)
328 1jr3_A DNA polymerase III subu 94.3 0.056 1.9E-06 55.3 6.6 43 401-444 118-160 (373)
329 3pqc_A Probable GTP-binding pr 94.3 0.019 6.4E-07 52.7 2.7 23 279-301 25-47 (195)
330 1z08_A RAS-related protein RAB 94.3 0.019 6.6E-07 51.3 2.7 22 279-300 8-29 (170)
331 2bwj_A Adenylate kinase 5; pho 94.2 0.023 8E-07 52.7 3.2 27 275-301 10-36 (199)
332 1aky_A Adenylate kinase; ATP:A 94.2 0.026 8.9E-07 53.7 3.6 25 276-300 3-27 (220)
333 1ek0_A Protein (GTP-binding pr 94.2 0.025 8.7E-07 50.3 3.4 22 280-301 6-27 (170)
334 2ew1_A RAS-related protein RAB 94.2 0.035 1.2E-06 52.1 4.5 22 279-300 28-49 (201)
335 2cxx_A Probable GTP-binding pr 94.2 0.025 8.6E-07 51.6 3.4 22 280-301 4-25 (190)
336 1c1y_A RAS-related protein RAP 94.2 0.026 9E-07 50.1 3.4 22 279-300 5-26 (167)
337 1g16_A RAS-related protein SEC 94.2 0.019 6.4E-07 51.3 2.5 22 280-301 6-27 (170)
338 2fn4_A P23, RAS-related protei 94.2 0.019 6.5E-07 51.8 2.5 22 279-300 11-32 (181)
339 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.021 7.1E-07 51.6 2.7 22 279-300 9-30 (177)
340 3bgw_A DNAB-like replicative h 94.2 0.15 5.2E-06 54.3 9.9 36 264-299 184-219 (444)
341 3t1o_A Gliding protein MGLA; G 94.2 0.022 7.4E-07 52.3 2.8 25 279-303 16-40 (198)
342 1zd8_A GTP:AMP phosphotransfer 94.2 0.025 8.5E-07 54.2 3.3 26 275-300 5-30 (227)
343 1ky3_A GTP-binding protein YPT 94.2 0.027 9.3E-07 50.8 3.4 23 279-301 10-32 (182)
344 1wf3_A GTP-binding protein; GT 94.1 0.025 8.4E-07 57.2 3.4 22 279-300 9-30 (301)
345 1zuh_A Shikimate kinase; alpha 94.1 0.027 9.4E-07 51.0 3.4 23 277-299 7-29 (168)
346 1m7b_A RND3/RHOE small GTP-bin 94.1 0.034 1.2E-06 50.9 4.0 22 279-300 9-30 (184)
347 1r2q_A RAS-related protein RAB 94.1 0.023 7.7E-07 50.7 2.7 22 279-300 8-29 (170)
348 4dsu_A GTPase KRAS, isoform 2B 94.1 0.023 7.7E-07 51.8 2.7 22 279-300 6-27 (189)
349 2oil_A CATX-8, RAS-related pro 94.0 0.023 7.8E-07 52.4 2.7 23 279-301 27-49 (193)
350 3u61_B DNA polymerase accessor 94.0 0.13 4.3E-06 51.9 8.5 42 402-444 105-147 (324)
351 2hxs_A RAB-26, RAS-related pro 94.0 0.027 9.1E-07 50.8 3.1 22 279-300 8-29 (178)
352 3clv_A RAB5 protein, putative; 94.0 0.024 8.2E-07 52.0 2.7 23 279-301 9-31 (208)
353 2xtp_A GTPase IMAP family memb 94.0 0.025 8.5E-07 55.3 3.0 23 279-301 24-46 (260)
354 2cdn_A Adenylate kinase; phosp 94.0 0.033 1.1E-06 52.1 3.7 25 276-300 19-43 (201)
355 3fb4_A Adenylate kinase; psych 94.0 0.029 9.8E-07 53.1 3.3 21 279-299 2-22 (216)
356 1upt_A ARL1, ADP-ribosylation 94.0 0.025 8.4E-07 50.6 2.7 22 279-300 9-30 (171)
357 2pbr_A DTMP kinase, thymidylat 94.0 0.029 1E-06 51.6 3.3 23 279-301 2-24 (195)
358 3bc1_A RAS-related protein RAB 93.9 0.024 8.4E-07 51.7 2.7 22 279-300 13-34 (195)
359 1r8s_A ADP-ribosylation factor 93.9 0.026 8.8E-07 50.2 2.7 20 280-299 3-22 (164)
360 3a1s_A Iron(II) transport prot 93.9 0.028 9.7E-07 55.3 3.2 23 279-301 7-29 (258)
361 1sky_E F1-ATPase, F1-ATP synth 93.9 0.014 4.7E-07 62.6 0.9 46 264-310 139-184 (473)
362 3t5g_A GTP-binding protein RHE 93.9 0.046 1.6E-06 49.5 4.4 21 279-299 8-28 (181)
363 1ukz_A Uridylate kinase; trans 93.9 0.032 1.1E-06 52.2 3.4 25 276-300 14-38 (203)
364 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.033 1.1E-06 54.8 3.6 25 276-300 3-27 (260)
365 1qf9_A UMP/CMP kinase, protein 93.8 0.031 1.1E-06 51.4 3.2 23 277-299 6-28 (194)
366 3t5d_A Septin-7; GTP-binding p 93.8 0.027 9.2E-07 55.8 2.9 22 280-301 11-32 (274)
367 2g6b_A RAS-related protein RAB 93.8 0.027 9.3E-07 50.9 2.7 23 279-301 12-34 (180)
368 1e6c_A Shikimate kinase; phosp 93.8 0.028 9.5E-07 50.9 2.8 23 278-300 3-25 (173)
369 1zak_A Adenylate kinase; ATP:A 93.8 0.027 9.1E-07 53.7 2.7 25 276-300 4-28 (222)
370 1z0f_A RAB14, member RAS oncog 93.8 0.027 9.4E-07 50.6 2.7 23 279-301 17-39 (179)
371 3cnl_A YLQF, putative uncharac 93.8 0.034 1.2E-06 55.0 3.5 30 278-307 100-129 (262)
372 2pt5_A Shikimate kinase, SK; a 93.8 0.034 1.2E-06 50.1 3.3 22 279-300 2-23 (168)
373 3i8s_A Ferrous iron transport 93.8 0.028 9.7E-07 55.8 3.0 23 279-301 5-27 (274)
374 1ksh_A ARF-like protein 2; sma 93.8 0.032 1.1E-06 51.0 3.1 24 278-301 19-42 (186)
375 2a9k_A RAS-related protein RAL 93.7 0.028 9.6E-07 51.0 2.7 22 279-300 20-41 (187)
376 3con_A GTPase NRAS; structural 93.7 0.028 9.5E-07 51.6 2.7 22 279-300 23-44 (190)
377 3dl0_A Adenylate kinase; phosp 93.7 0.034 1.2E-06 52.6 3.3 22 279-300 2-23 (216)
378 2iyv_A Shikimate kinase, SK; t 93.6 0.03 1E-06 51.5 2.7 22 278-299 3-24 (184)
379 1nrj_B SR-beta, signal recogni 93.6 0.03 1E-06 52.8 2.7 23 279-301 14-36 (218)
380 1vg8_A RAS-related protein RAB 93.6 0.031 1.1E-06 52.0 2.7 23 279-301 10-32 (207)
381 2y8e_A RAB-protein 6, GH09086P 93.6 0.036 1.2E-06 49.8 3.1 22 279-300 16-37 (179)
382 1sxj_B Activator 1 37 kDa subu 93.6 0.08 2.7E-06 52.8 5.9 43 401-444 106-148 (323)
383 2bme_A RAB4A, RAS-related prot 93.6 0.029 1E-06 51.1 2.5 22 279-300 12-33 (186)
384 2bov_A RAla, RAS-related prote 93.5 0.032 1.1E-06 51.7 2.7 22 279-300 16-37 (206)
385 3iev_A GTP-binding protein ERA 93.5 0.037 1.3E-06 55.9 3.4 22 279-300 12-33 (308)
386 2gf0_A GTP-binding protein DI- 93.5 0.031 1E-06 51.5 2.5 22 279-300 10-31 (199)
387 2gf9_A RAS-related protein RAB 93.5 0.033 1.1E-06 51.1 2.7 23 279-301 24-46 (189)
388 3kkq_A RAS-related protein M-R 93.5 0.042 1.4E-06 49.9 3.3 22 279-300 20-41 (183)
389 2il1_A RAB12; G-protein, GDP, 93.4 0.037 1.3E-06 51.2 3.0 23 279-301 28-50 (192)
390 1mh1_A RAC1; GTP-binding, GTPa 93.4 0.034 1.2E-06 50.4 2.7 22 279-300 7-28 (186)
391 2efe_B Small GTP-binding prote 93.4 0.044 1.5E-06 49.5 3.4 23 279-301 14-36 (181)
392 2h57_A ADP-ribosylation factor 93.4 0.03 1E-06 51.5 2.3 23 279-301 23-45 (190)
393 4dhe_A Probable GTP-binding pr 93.4 0.022 7.4E-07 53.8 1.4 23 279-301 31-53 (223)
394 2wsm_A Hydrogenase expression/ 93.4 0.034 1.2E-06 52.5 2.7 23 279-301 32-54 (221)
395 3tkl_A RAS-related protein RAB 93.4 0.043 1.5E-06 50.4 3.3 23 279-301 18-40 (196)
396 1zbd_A Rabphilin-3A; G protein 93.4 0.04 1.4E-06 51.2 3.1 23 279-301 10-32 (203)
397 2cjw_A GTP-binding protein GEM 93.3 0.035 1.2E-06 51.6 2.7 22 279-300 8-29 (192)
398 2xb4_A Adenylate kinase; ATP-b 93.3 0.043 1.5E-06 52.5 3.3 21 279-299 2-22 (223)
399 2grj_A Dephospho-COA kinase; T 93.3 0.044 1.5E-06 51.6 3.3 23 278-300 13-35 (192)
400 2fg5_A RAB-22B, RAS-related pr 93.3 0.034 1.2E-06 51.3 2.5 23 279-301 25-47 (192)
401 2o52_A RAS-related protein RAB 93.3 0.039 1.3E-06 51.4 2.9 22 279-300 27-48 (200)
402 1zj6_A ADP-ribosylation factor 93.3 0.04 1.4E-06 50.5 2.9 22 279-300 18-39 (187)
403 1gwn_A RHO-related GTP-binding 93.3 0.057 1.9E-06 50.8 4.0 23 279-301 30-52 (205)
404 3tlx_A Adenylate kinase 2; str 93.2 0.048 1.6E-06 53.0 3.5 24 276-299 28-51 (243)
405 4bas_A ADP-ribosylation factor 93.2 0.043 1.5E-06 50.5 3.1 22 279-300 19-40 (199)
406 3llu_A RAS-related GTP-binding 93.2 0.045 1.5E-06 50.8 3.2 25 279-303 22-46 (196)
407 3oes_A GTPase rhebl1; small GT 93.2 0.035 1.2E-06 51.6 2.5 23 279-301 26-48 (201)
408 2a5j_A RAS-related protein RAB 93.2 0.039 1.3E-06 50.8 2.7 23 279-301 23-45 (191)
409 3bwd_D RAC-like GTP-binding pr 93.2 0.04 1.4E-06 49.9 2.7 22 279-300 10-31 (182)
410 1uj2_A Uridine-cytidine kinase 93.1 0.046 1.6E-06 53.3 3.3 23 278-300 23-45 (252)
411 2qu8_A Putative nucleolar GTP- 93.1 0.045 1.5E-06 52.2 3.1 22 279-300 31-52 (228)
412 3dz8_A RAS-related protein RAB 93.1 0.037 1.3E-06 50.9 2.5 23 279-301 25-47 (191)
413 1jwy_B Dynamin A GTPase domain 93.1 0.041 1.4E-06 55.2 2.9 24 279-302 26-49 (315)
414 1z06_A RAS-related protein RAB 93.1 0.042 1.4E-06 50.5 2.7 22 279-300 22-43 (189)
415 3euj_A Chromosome partition pr 93.1 0.11 3.6E-06 56.1 6.2 76 377-457 372-464 (483)
416 2h17_A ADP-ribosylation factor 93.0 0.039 1.3E-06 50.3 2.4 22 279-300 23-44 (181)
417 1zd9_A ADP-ribosylation factor 93.0 0.042 1.5E-06 50.5 2.7 22 279-300 24-45 (188)
418 3def_A T7I23.11 protein; chlor 93.0 0.044 1.5E-06 53.8 3.0 23 279-301 38-60 (262)
419 2bcg_Y Protein YP2, GTP-bindin 93.0 0.039 1.3E-06 51.4 2.5 23 279-301 10-32 (206)
420 2atv_A RERG, RAS-like estrogen 93.0 0.043 1.5E-06 50.7 2.7 22 279-300 30-51 (196)
421 1x3s_A RAS-related protein RAB 93.0 0.043 1.5E-06 50.2 2.7 23 279-301 17-39 (195)
422 4edh_A DTMP kinase, thymidylat 93.0 0.056 1.9E-06 51.7 3.5 28 275-302 4-31 (213)
423 1a7j_A Phosphoribulokinase; tr 93.0 0.029 1E-06 56.3 1.5 26 276-301 4-29 (290)
424 2f7s_A C25KG, RAS-related prot 92.9 0.052 1.8E-06 51.0 3.2 24 279-302 27-50 (217)
425 3reg_A RHO-like small GTPase; 92.9 0.055 1.9E-06 49.8 3.3 23 279-301 25-47 (194)
426 3tqf_A HPR(Ser) kinase; transf 92.9 0.096 3.3E-06 48.6 4.8 35 264-299 4-38 (181)
427 2p5s_A RAS and EF-hand domain 92.9 0.045 1.5E-06 50.8 2.7 23 279-301 30-52 (199)
428 2q3h_A RAS homolog gene family 92.9 0.052 1.8E-06 50.2 3.1 22 279-300 22-43 (201)
429 2iwr_A Centaurin gamma 1; ANK 92.8 0.036 1.2E-06 50.1 1.9 22 279-300 9-30 (178)
430 2j1l_A RHO-related GTP-binding 92.8 0.05 1.7E-06 51.3 3.0 22 279-300 36-57 (214)
431 3v9p_A DTMP kinase, thymidylat 92.8 0.048 1.6E-06 52.8 2.8 28 275-302 23-50 (227)
432 1a5t_A Delta prime, HOLB; zinc 92.8 0.25 8.7E-06 50.2 8.4 43 401-444 107-149 (334)
433 2fh5_B SR-beta, signal recogni 92.8 0.061 2.1E-06 50.4 3.5 23 279-301 9-31 (214)
434 3cph_A RAS-related protein SEC 92.8 0.047 1.6E-06 50.9 2.7 22 279-300 22-43 (213)
435 2f6r_A COA synthase, bifunctio 92.7 0.053 1.8E-06 54.1 3.1 23 277-299 75-97 (281)
436 2b6h_A ADP-ribosylation factor 92.7 0.053 1.8E-06 50.2 2.8 22 279-300 31-52 (192)
437 1e4v_A Adenylate kinase; trans 92.6 0.057 2E-06 51.1 3.0 21 279-299 2-22 (214)
438 2fv8_A H6, RHO-related GTP-bin 92.6 0.048 1.7E-06 51.0 2.5 23 279-301 27-49 (207)
439 3be4_A Adenylate kinase; malar 92.6 0.061 2.1E-06 51.1 3.2 26 276-301 4-29 (217)
440 2fu5_C RAS-related protein RAB 92.6 0.037 1.3E-06 50.3 1.6 22 279-300 10-31 (183)
441 3lv8_A DTMP kinase, thymidylat 92.6 0.064 2.2E-06 52.2 3.4 27 276-302 26-52 (236)
442 1jbk_A CLPB protein; beta barr 92.6 0.072 2.5E-06 48.2 3.6 25 277-301 43-67 (195)
443 3c5c_A RAS-like protein 12; GD 92.5 0.056 1.9E-06 49.7 2.7 22 279-300 23-44 (187)
444 2aka_B Dynamin-1; fusion prote 92.4 0.054 1.8E-06 53.8 2.7 24 279-302 28-51 (299)
445 4tmk_A Protein (thymidylate ki 92.4 0.071 2.4E-06 51.0 3.4 27 276-302 2-28 (213)
446 1h65_A Chloroplast outer envel 92.4 0.059 2E-06 53.1 2.9 23 279-301 41-63 (270)
447 2g3y_A GTP-binding protein GEM 92.4 0.069 2.3E-06 50.9 3.2 22 279-300 39-60 (211)
448 1ak2_A Adenylate kinase isoenz 92.3 0.08 2.7E-06 50.9 3.6 25 276-300 15-39 (233)
449 1ltq_A Polynucleotide kinase; 92.3 0.07 2.4E-06 53.1 3.3 22 278-299 3-24 (301)
450 2atx_A Small GTP binding prote 92.2 0.059 2E-06 49.6 2.5 22 279-300 20-41 (194)
451 2h92_A Cytidylate kinase; ross 92.2 0.067 2.3E-06 50.6 2.9 25 277-301 3-27 (219)
452 2gco_A H9, RHO-related GTP-bin 92.1 0.073 2.5E-06 49.5 3.1 23 279-301 27-49 (201)
453 3tmk_A Thymidylate kinase; pho 92.1 0.082 2.8E-06 50.7 3.4 33 275-308 3-35 (216)
454 4djt_A GTP-binding nuclear pro 92.1 0.036 1.2E-06 52.2 0.8 23 279-301 13-35 (218)
455 2v3c_C SRP54, signal recogniti 92.0 0.028 9.7E-07 59.8 0.1 39 277-315 99-137 (432)
456 2i1q_A DNA repair and recombin 92.0 0.087 3E-06 53.3 3.7 27 273-299 94-120 (322)
457 2x77_A ADP-ribosylation factor 92.0 0.052 1.8E-06 49.7 1.8 21 279-299 24-44 (189)
458 3d3q_A TRNA delta(2)-isopenten 91.9 0.08 2.7E-06 54.4 3.3 25 278-302 8-32 (340)
459 3umf_A Adenylate kinase; rossm 91.9 0.075 2.6E-06 51.1 2.8 25 275-299 27-51 (217)
460 2hf9_A Probable hydrogenase ni 91.8 0.072 2.5E-06 50.4 2.7 23 279-301 40-62 (226)
461 2hup_A RAS-related protein RAB 91.8 0.07 2.4E-06 49.8 2.5 22 279-300 31-52 (201)
462 2yc2_C IFT27, small RAB-relate 91.8 0.037 1.3E-06 51.3 0.5 22 279-300 22-43 (208)
463 3ld9_A DTMP kinase, thymidylat 91.8 0.098 3.3E-06 50.5 3.5 27 276-302 20-46 (223)
464 3cmu_A Protein RECA, recombina 91.8 0.29 9.8E-06 61.0 8.4 35 264-298 1066-1102(2050)
465 2qmh_A HPR kinase/phosphorylas 91.7 0.13 4.6E-06 48.7 4.3 35 265-300 23-57 (205)
466 3cpj_B GTP-binding protein YPT 91.7 0.078 2.7E-06 50.3 2.7 23 279-301 15-37 (223)
467 3exa_A TRNA delta(2)-isopenten 91.7 0.1 3.4E-06 53.1 3.6 25 277-301 3-27 (322)
468 2orv_A Thymidine kinase; TP4A 91.6 0.28 9.4E-06 47.6 6.5 51 401-457 89-150 (234)
469 2ocp_A DGK, deoxyguanosine kin 91.6 0.099 3.4E-06 50.4 3.4 26 276-301 1-26 (241)
470 4gzl_A RAS-related C3 botulinu 91.6 0.076 2.6E-06 49.6 2.5 21 279-299 32-52 (204)
471 3a8t_A Adenylate isopentenyltr 91.5 0.1 3.5E-06 53.5 3.5 26 276-301 39-64 (339)
472 3p32_A Probable GTPase RV1496/ 91.4 0.071 2.4E-06 55.0 2.3 26 277-302 79-104 (355)
473 1puj_A YLQF, conserved hypothe 91.4 0.12 4.2E-06 51.5 3.9 28 277-304 120-147 (282)
474 2p65_A Hypothetical protein PF 91.4 0.091 3.1E-06 47.5 2.7 26 277-302 43-68 (187)
475 3pxi_A Negative regulator of g 91.4 0.31 1.1E-05 55.3 7.8 23 279-301 523-545 (758)
476 3crm_A TRNA delta(2)-isopenten 91.3 0.1 3.5E-06 53.2 3.3 24 278-301 6-29 (323)
477 2j0v_A RAC-like GTP-binding pr 91.3 0.11 3.6E-06 48.6 3.1 22 279-300 11-32 (212)
478 3q3j_B RHO-related GTP-binding 91.2 0.091 3.1E-06 49.6 2.7 22 279-300 29-50 (214)
479 1wxq_A GTP-binding protein; st 91.2 0.095 3.3E-06 55.0 3.0 42 361-408 180-221 (397)
480 1lnz_A SPO0B-associated GTP-bi 91.1 0.16 5.4E-06 52.2 4.5 33 268-300 149-181 (342)
481 2orw_A Thymidine kinase; TMTK, 90.9 0.13 4.5E-06 47.8 3.4 52 401-457 75-137 (184)
482 1p5z_B DCK, deoxycytidine kina 90.9 0.083 2.9E-06 51.7 2.1 27 275-301 22-48 (263)
483 2j9r_A Thymidine kinase; TK1, 90.8 0.49 1.7E-05 45.3 7.3 51 402-457 101-162 (214)
484 2zts_A Putative uncharacterize 90.8 0.16 5.5E-06 48.5 4.0 25 273-297 26-50 (251)
485 3sr0_A Adenylate kinase; phosp 90.5 0.14 4.9E-06 48.6 3.3 22 279-300 2-23 (206)
486 4a9a_A Ribosome-interacting GT 90.5 0.13 4.5E-06 53.5 3.3 37 279-315 74-121 (376)
487 3foz_A TRNA delta(2)-isopenten 90.4 0.15 5.3E-06 51.6 3.6 25 277-301 10-34 (316)
488 2hjg_A GTP-binding protein ENG 90.2 0.13 4.3E-06 54.6 2.9 22 279-300 5-26 (436)
489 2r62_A Cell division protease 90.2 0.037 1.3E-06 54.2 -1.3 27 272-300 41-67 (268)
490 3th5_A RAS-related C3 botulinu 89.4 0.059 2E-06 50.1 0.0 21 279-299 32-52 (204)
491 4hlc_A DTMP kinase, thymidylat 89.8 0.19 6.6E-06 47.6 3.5 26 277-302 2-27 (205)
492 3gj0_A GTP-binding nuclear pro 89.7 0.1 3.5E-06 49.2 1.5 21 280-300 18-39 (221)
493 3sjy_A Translation initiation 89.6 0.18 6E-06 52.9 3.4 23 279-301 10-32 (403)
494 1g5t_A COB(I)alamin adenosyltr 89.6 0.26 9E-06 46.5 4.2 70 390-459 106-180 (196)
495 2xxa_A Signal recognition part 89.4 2.7 9.2E-05 44.4 12.4 27 276-302 99-125 (433)
496 3l0i_B RAS-related protein RAB 89.3 0.056 1.9E-06 50.1 -0.7 23 279-301 35-57 (199)
497 3r7w_A Gtpase1, GTP-binding pr 89.1 0.23 8E-06 49.9 3.8 23 278-300 4-26 (307)
498 3gmt_A Adenylate kinase; ssgci 89.1 0.2 6.8E-06 48.5 3.1 21 279-299 10-30 (230)
499 1mky_A Probable GTP-binding pr 89.0 0.35 1.2E-05 51.2 5.2 37 279-315 3-51 (439)
500 2x2e_A Dynamin-1; nitration, h 88.9 0.14 4.7E-06 52.7 1.9 23 279-301 33-55 (353)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.5e-56 Score=468.87 Aligned_cols=227 Identities=28% Similarity=0.439 Sum_probs=208.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 318 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---- 318 (568)
.++|+++||+|+|++.. ..+.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 22 ~~mi~v~~ls~~y~~~~--~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT--RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSS--SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CceEEEEeEEEEeCCCC--CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 45899999999997421 235799999999999999999999999999999999999999999999999999642
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
..+.|++|||+||++.+++.+||+||+.+.....+.+.++.+++++++|+.+||. +.+++++++|||||||||+||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~--~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG--DKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG--GGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2345789999999999999999999999988888877778888999999999996 48999999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|++|||||||+||||.+++.++++|++++ .|+|||++||||+++..+||||++|++|++++.|+++++...
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999863 499999999999999999999999999999999999998654
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.3e-56 Score=462.90 Aligned_cols=221 Identities=25% Similarity=0.403 Sum_probs=203.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~~ 321 (568)
+|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....
T Consensus 4 ~l~i~~ls~~y~~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQN------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 6999999999973 679999999999999999999999999999999999999999999999999832 2233
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.+++|||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++.+|||||||||+|||||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS--ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777777777788999999999997 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|++|||||||+|||+..|+++++.+++. + .|+|||++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999988764 3 599999999999999999999999999999999999998764
No 3
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-55 Score=441.91 Aligned_cols=224 Identities=30% Similarity=0.538 Sum_probs=205.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
.++|+++||+|.|++ +.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.......
T Consensus 13 ~~~l~i~~l~~~y~~------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEECC------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 457999999999963 57999999999999999999999999999999999999999999999999986555567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++.+||+||+.++...++.+.++.+++++++++.++|. +..++++++||||||||++|||||+.+
T Consensus 87 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~--~~~~~~~~~LSgGq~qRv~lAraL~~~ 164 (256)
T 1vpl_A 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG--EKIKDRVSTYSKGMVRKLLIARALMVN 164 (256)
T ss_dssp HTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG--GGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 788999999999999999999999987666655555567889999999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
|+++||||||+||||.+++.++++|++++ +|+|||++||++++++.+|||+++|++|++++.|+++++.+.+
T Consensus 165 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 237 (256)
T 1vpl_A 165 PRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 237 (256)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999864 6999999999999999999999999999999999999997654
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4.1e-55 Score=441.52 Aligned_cols=222 Identities=24% Similarity=0.428 Sum_probs=202.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC---CcHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR---TDMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~---~~~~ 320 (568)
.+|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 23 ~~l~i~~l~~~y~~------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSFGS------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 36999999999973 57999999999999999999999999999999999999999999999999984 2334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
..|+++||+||++.+++.+||+||+.++. ...+.+.++.+++++++++.++|. +..++++.+||||||||++|||||
T Consensus 97 ~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK--DKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCChhhCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999864 455555555667899999999996 478999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999986 4699999999999999999999999999999999999998754
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.4e-55 Score=447.47 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=202.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC---cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT---DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~---~~~ 320 (568)
++|+++||+|+|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...
T Consensus 6 ~~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999974 2459999999999999999999999999999999999999999999999999842 234
Q ss_pred HhhcceEEEcCCCC-CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL-LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~-l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+.|++|||+||++. .+..+||+||+.+.....+.+.++.+++++++++.++|. +..++++.+|||||||||+|||||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--HLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCCcccCCHHHHHHHHHHHHH
Confidence 56789999999862 333689999999988777777777788999999999996 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
+.+|++|||||||+||||.+++.++++|++++ +|+|||++|||++++..+||||++|++|++++.|+++++.+
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999864 49999999999999999999999999999999999999865
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-55 Score=441.02 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=201.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
++|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 5 NKLHVIDLHKRYGG------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CCEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred ceEEEeeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 36999999999973 579999999999999999999999999999999999999999999999999851
Q ss_pred -----c---HHHhhcceEEEcCCCCCCCCCCHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCc-ccccCCCCCh
Q 008362 318 -----D---MDRIYTSMGVCPQEDLLWETLTGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGV-ADKQAGKYSG 387 (568)
Q Consensus 318 -----~---~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~~LSg 387 (568)
. ....|+.+||+||++.+++.+||+||+.+.. ..++.+.++.+++++++++.+||. +. .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC--HHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC--chhhcCCcccCCH
Confidence 1 1345678999999999999999999999854 455555555667899999999996 47 8999999999
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 008362 467 PKELKAR 473 (568)
Q Consensus 467 ~~~l~~~ 473 (568)
++++.+.
T Consensus 237 ~~~~~~~ 243 (262)
T 1b0u_A 237 PEQVFGN 243 (262)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998653
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.9e-55 Score=461.78 Aligned_cols=220 Identities=27% Similarity=0.451 Sum_probs=205.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||+|+|++ +.||+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... .++
T Consensus 3 ~l~~~~l~~~yg~------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~-~~r 75 (381)
T 3rlf_A 3 SVQLQNVTKAWGE------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-AER 75 (381)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-GGS
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-HHC
Confidence 5899999999973 679999999999999999999999999999999999999999999999999865322 347
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
.|||+||++.+|+.+||+||+.|+.+.++.++++.+++++++++.++|. ++.++++.+|||||||||+|||||+.+|+
T Consensus 76 ~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA--HLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp CEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred CEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999998888888888888999999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||||+|||+..|+++++.|+++ ++ |+|+|++|||++|+..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999986 44 99999999999999999999999999999999999998654
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-54 Score=431.85 Aligned_cols=223 Identities=23% Similarity=0.411 Sum_probs=193.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HH---
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MD--- 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~--- 320 (568)
+|+++||+|+|++.. ..+.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..
T Consensus 1 ~l~~~~l~~~y~~~~--~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCC--cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 488999999997421 124699999999999999999999999999999999999999999999999998642 21
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhc---CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RI-YTSMGVCPQEDLLWETLTGREHLLFYGRLK---NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
+. |+.+||+||++.+++.+||+||+.+....+ +.+.++..+++.++++.+++.+ ...++++.+||||||||++||
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-RFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 22 356999999999999999999999876544 3445566778899999999963 235999999999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||+.+|+++||||||+||||.+++.++++|+++ ++ |+|||++|||++.+ .+|||+++|++|+++..++++++.
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999986 34 99999999999966 689999999999999999887764
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-54 Score=426.18 Aligned_cols=214 Identities=22% Similarity=0.356 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-H---
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-M--- 319 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~--- 319 (568)
++++++||+|.|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~~l~~~~l~~~y~~------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (224)
T 2pcj_A 3 EILRAENIKKVIRG------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76 (224)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH
T ss_pred cEEEEEeEEEEECC------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 36999999999973 5799999999999999999999999999999999999999999999999998542 2
Q ss_pred HHhh-cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 320 DRIY-TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 320 ~~~r-~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
...| +++||+||++.+++.+||+||+.+....++.+.++.+++++++++.++|. +..++++++||||||||++||||
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG--DKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc--hhhhCChhhCCHHHHHHHHHHHH
Confidence 1233 67999999999999999999999877666655555667899999999997 47899999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|+.+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++ .+|||+++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999986 4699999999999998 7899999999999999885
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=2.1e-54 Score=452.42 Aligned_cols=222 Identities=28% Similarity=0.477 Sum_probs=204.6
Q ss_pred CCeEEEEeEEEEc-CCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHH
Q 008362 243 SHAIISDNLRKIY-PGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 243 ~~~i~~~~l~k~y-~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
..+|+++||+|+| + ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... .
T Consensus 12 ~~~l~~~~l~~~y~g------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG------GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-P 84 (355)
T ss_dssp CEEEEEEEEEECCTT------STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-G
T ss_pred CceEEEEEEEEEEcC------CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-h
Confidence 3579999999999 5 256999999999999999999999999999999999999999999999999986422 3
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~--~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE--SYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999987777776667778899999999996 48999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999986 33 99999999999999999999999999999999999998653
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.5e-54 Score=451.32 Aligned_cols=220 Identities=27% Similarity=0.455 Sum_probs=203.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (362)
T 2it1_A 3 EIKLENIVKKFGN------FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDR 75 (362)
T ss_dssp CEEEEEEEEESSS------SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-HhHC
Confidence 5899999999963 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 76 NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID--KLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp TEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT--TCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999987777766667778899999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998653
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.5e-54 Score=452.84 Aligned_cols=220 Identities=29% Similarity=0.468 Sum_probs=201.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 75 (359)
T 2yyz_A 3 SIRVVNLKKYFGK------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYR 75 (359)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGT
T ss_pred EEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhC
Confidence 5899999999973 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 76 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 76 EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID--NLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp TEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999977666655555567899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998653
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.3e-54 Score=435.15 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=197.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDR 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~ 321 (568)
++++++||+|+|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 6 ~~l~i~~l~~~y~~------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 79 (257)
T 1g6h_A 6 EILRTENIVKYFGE------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79 (257)
T ss_dssp EEEEEEEEEEEETT------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred cEEEEeeeEEEECC------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998542 234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhh--cC-----------CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRL--KN-----------LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l--~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.++.+||+||++.+++.+||+||+.+.... .+ .+.++.+++++++++.+||. +..++++++||||
T Consensus 80 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS--HLYDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHH
T ss_pred HhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc--hhhCCCchhCCHH
Confidence 567899999999999999999999986543 23 23345567889999999996 4789999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 389 MKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 389 ~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
||||++|||||+.+|+++||||||+||||.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999986 4599999999999999999999999999999999999
Q ss_pred HH
Q 008362 468 KE 469 (568)
Q Consensus 468 ~~ 469 (568)
++
T Consensus 238 ~~ 239 (257)
T 1g6h_A 238 EE 239 (257)
T ss_dssp HH
T ss_pred HH
Confidence 88
No 14
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.3e-54 Score=426.87 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=196.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHH-
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDR- 321 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~- 321 (568)
++++++||+|+|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ...
T Consensus 5 ~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEECC------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 47999999999973 5799999999999999999999999999999999999999999999999998642 222
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC-CCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVN-LFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.++.+||+||++.+++.+||+||+.++.. ...+.++.+++++++++.++ +. +..++++++||||||||++|||||+
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 155 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLK--ERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHH--TTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHh--hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35669999999999999999999998642 22234455677889999995 86 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.+|+++||||||+||||.+++.++++|++++ +|+|||++|||++++..+|||+++|++|++++.|+++++.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9999999999999999999999999999864 69999999999999999999999999999999999988753
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1e-53 Score=432.26 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=198.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
++++++||+|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.
T Consensus 10 ~~l~~~~l~~~~~~------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHVQQ------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEeCC------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 57999999999973 679999999999999999999999999999999999999999999999999865 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC-
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG- 401 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~- 401 (568)
++.+||+||++.+++.+||+||+.+..... ..++.+++++++++.+++. +..++++++||||||||++|||||+.
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCL--ALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCS--TTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCCh--hHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 778999999999988899999999875543 3345567899999999997 48899999999999999999999999
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 402 -----NPKVVYMDEPSTGLDPASRNNLWNVVKRAK-Q-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 402 -----~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+|++|||||||+||||.+++.++++|++++ + |+|||++|||++++..+|||+++|++|++++.|+++++.
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999863 3 689999999999999999999999999999999998874
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.1e-54 Score=451.56 Aligned_cols=221 Identities=26% Similarity=0.444 Sum_probs=203.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----H
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----M 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~ 319 (568)
+|+++||+|+|++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGE------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 5899999999973 5799999999999999999999999999999999999999999999999988531 1
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 320 DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
...+++|||+||++.+|+.+||+||+.|+.+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL 154 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT--ELLNRKPRELSGGQRQRVALGRAI 154 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG--GGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc--hHhcCCcccCCHHHHHHHHHHHHH
Confidence 223578999999999999999999999988777776667778899999999996 489999999999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+.+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999986 33 99999999999999999999999999999999999998654
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.7e-54 Score=452.42 Aligned_cols=221 Identities=27% Similarity=0.506 Sum_probs=202.9
Q ss_pred eEEEEeEEEEcCCCCCCCccc--eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc----
Q 008362 245 AIISDNLRKIYPGRDGNPEKV--AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD---- 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~--al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~---- 318 (568)
+|+++||+|+|++ ++ +|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 3 ~l~i~~l~~~y~~------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFKK------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEGG------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEECC------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 5899999999963 56 99999999999999999999999999999999999999999999999988531
Q ss_pred HHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH
Q 008362 319 MDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 319 ~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
....++++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+||||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH--HVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG--GGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHH
Confidence 2234678999999999999999999999987776666666778899999999996 48999999999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|+++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999986 33 99999999999999999999999999999999999998653
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.6e-54 Score=450.74 Aligned_cols=220 Identities=28% Similarity=0.443 Sum_probs=195.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 11 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r 83 (372)
T 1v43_A 11 EVKLENLTKRFGN------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDR 83 (372)
T ss_dssp CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGG
T ss_pred eEEEEEEEEEECC------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhC
Confidence 5999999999973 57999999999999999999999999999999999999999999999999986432 2357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.++.+++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 84 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 84 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE--ELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp TEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG--GGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999977666666666778899999999996 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+++++.|+++ ++ |+|+|++|||++++..+||||++|++|+++..|+++++.++
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999986 34 99999999999999999999999999999999999998653
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-53 Score=446.27 Aligned_cols=216 Identities=29% Similarity=0.510 Sum_probs=198.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|+ ++ +++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++
T Consensus 1 ml~~~~l~~~y~------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWK------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-PEKH 72 (348)
T ss_dssp CEEEEEEEEECS------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-HHHH
T ss_pred CEEEEEEEEEEC------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc-hhhC
Confidence 478999999996 35 999999999999999999999999999999999999999999999999986422 3467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+|+.+||+||+.|..+.++.+.+ ++++++++.++|. ++.++++++|||||||||+|||||+.+|+
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~--~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIE--HLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCT--TTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999998766654433 6789999999997 48999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+|||+..|+.+++.|+++ + .|+|+|++|||++++..+|||+++|++|+++..|+++++.++
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 3 499999999999999999999999999999999999998653
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-53 Score=425.59 Aligned_cols=215 Identities=22% Similarity=0.389 Sum_probs=193.8
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|++ +++|+||++++ |++||+||||||||||+|+|+|+++|++|+|.++|+++... ...++
T Consensus 1 ml~~~~l~~~y~~--------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN--------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-PPERR 70 (240)
T ss_dssp CCEEEEEEEEETT--------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-CTTTS
T ss_pred CEEEEEEEEEeCC--------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-chhhC
Confidence 3789999999962 59999999999 99999999999999999999999999999999999998542 23467
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
++||+||++.+++.+||+||+.+....++. ...+++++++++.+||. +..++++++||||||||++|||||+.+|+
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIA--HLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCT--TTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999999999999999999986544332 22356789999999996 47899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
++||||||+||||.+++.++++|+++ ++ |+|||++|||++++..+|||+++|++|++++.|+++++.+.
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999986 33 99999999999999999999999999999999999998764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-52 Score=424.77 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=197.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|+... ...+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ..|+
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT-PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTS-TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGG
T ss_pred EEEEEEEEEEecCCC-ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhhh
Confidence 589999999996210 0015699999999999999999999999999999999999999999999999998542 5678
Q ss_pred ceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC--CCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 325 SMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF--HGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 325 ~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
++||+||++ .+++.+||+||+.++.... .+.++.+++++++++.+||. + ..++++++||||||||++|||||+.
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~--~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDS--FKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHH--HTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcc--cccCChhhCCHHHHHHHHHHHHHHc
Confidence 899999995 4666789999999865433 33334456789999999995 4 7899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhcC
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYG 475 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~~ 475 (568)
+|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++|+++..|+++++.+...
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHSC
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCcc
Confidence 99999999999999999999999999986 469999999999999999999999999999999999999876543
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.6e-52 Score=426.25 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC--C-cHH
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR--T-DMD 320 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~--~-~~~ 320 (568)
++|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. . ...
T Consensus 20 ~~l~~~~l~~~y~~------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred ceEEEEeEEEEECC------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 47999999999973 57999999999999999999999999999999999999999999999999885 3 345
Q ss_pred HhhcceEEEcCCCCC--CCCCCHHHHHHHHhh----hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHH
Q 008362 321 RIYTSMGVCPQEDLL--WETLTGREHLLFYGR----LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l--~~~lTv~e~l~~~~~----l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
..++++||+||++.+ .+.+||+||+.+... +.+...++..++++++++.+||. +..++++.+|||||||||+
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS--AKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHH
Confidence 567889999998754 335799999987431 12222344567789999999996 4789999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceE--EEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAI--ILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~ti--il~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|| |++|||++++..+|||+++|++|++++.|+++++.
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999864 48999 99999999999999999999999999999998874
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2e-51 Score=415.95 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=193.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-H
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-M 319 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~ 319 (568)
.++|+++||+|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+ .+|++|+|.++|+++... .
T Consensus 18 ~~~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSVED------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEETT------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEECC------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 457999999999963 5799999999999999999999999999999999999 479999999999998542 2
Q ss_pred HH-hhcceEEEcCCCCCCCCCCHHHHHHHHhh-h---cC---CCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHH
Q 008362 320 DR-IYTSMGVCPQEDLLWETLTGREHLLFYGR-L---KN---LKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMK 390 (568)
Q Consensus 320 ~~-~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l---~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~k 390 (568)
.. .++.+||+||++.+++.+|+.||+.+... . .+ .+.++..++++++++.+||.+ +..++++. +||||||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCT-TTTTSBTTTTCCHHHH
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHH
Confidence 22 24569999999999999999999987531 1 12 233444568899999999952 36788887 5999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHH
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPK 468 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~ 468 (568)
||++|||||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++|||+++++.+ |||+++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 589999999999999887 9999999999999999998
Q ss_pred HHHHh
Q 008362 469 ELKAR 473 (568)
Q Consensus 469 ~l~~~ 473 (568)
++...
T Consensus 251 ~~~~~ 255 (267)
T 2zu0_C 251 LVKQL 255 (267)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87543
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.5e-51 Score=412.92 Aligned_cols=219 Identities=21% Similarity=0.296 Sum_probs=188.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC--CCCCceEEEECCeeCCCc-HH-
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI--TRTTSGTAYVQGLDIRTD-MD- 320 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl--~~p~~G~i~i~G~~i~~~-~~- 320 (568)
+++++||+|+|++ +.+|+|+||++++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++... ..
T Consensus 3 ~l~~~~l~~~y~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASIDG------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEECC------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 6999999999973 5799999999999999999999999999999999998 889999999999998642 22
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHhh-hcC--CCchhHHHHHHHHHHHcCCCCCCcccccCCC-CChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDLLWETLTGREHLLFYGR-LKN--LKGPALTQAVEESLKSVNLFHGGVADKQAGK-YSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-l~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-LSgG~kqrl~la 396 (568)
..++.+||+||++.+++.+|++||+.+... ..+ .+.++..++++++++.+||.. +..++++++ ||||||||++||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE-SYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCG-GGGGSBTTCC----HHHHHHHH
T ss_pred HHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCCh-hHhcCCcccCCCHHHHHHHHHH
Confidence 234569999999999999999999988643 222 222344567889999999941 478999999 999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHh-CCEEEEEECCEEEeecCHHHH
Q 008362 397 ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEAL-CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l-~dri~il~~G~l~~~g~~~~l 470 (568)
|||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++|||+++++.+ |||+++|++|++++.|+++..
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELA 231 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHH
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHH
Confidence 99999999999999999999999999999999874 589999999999999988 599999999999999998743
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.6e-51 Score=414.03 Aligned_cols=221 Identities=20% Similarity=0.360 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++||++.|++.. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....
T Consensus 15 ~~l~~~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 91 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHP---NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL 91 (271)
T ss_dssp CCEEEEEEEECCTTCT---TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred ceEEEEEEEEEeCCCC---CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH
Confidence 4699999999997411 2569999999999999999999999999999999999999999999999999854 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc-hhH-----HHHHHHHHHHc--CCCCCCcccccCCCCChhHHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG-PAL-----TQAVEESLKSV--NLFHGGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~-~~~-----~~~~~~~l~~~--~L~~~~~~~~~~~~LSgG~kqrl~ 394 (568)
|++|||+||++.+++ .||+||+.++.... .. ++. ...++++++.+ |+. +..++++.+||||||||++
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~--~~~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 92 HTQVAAVGQEPLLFG-RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYD--TEVGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHEEEECSSCCCCS-SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGG--SBCCGGGTTSCHHHHHHHH
T ss_pred hccEEEEecCCcccc-ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchh--hhhcCCcCCCCHHHHHHHH
Confidence 778999999999988 59999998754321 22 211 12345677877 675 4788999999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|++|||||||+|||+.+++.++++|+++. +|+|||++||++++++. |||+++|++|++++.|+++++.+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999864 38999999999999975 99999999999999999999876
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 246 ~ 246 (271)
T 2ixe_A 246 R 246 (271)
T ss_dssp H
T ss_pred C
Confidence 4
No 26
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.8e-51 Score=410.26 Aligned_cols=218 Identities=23% Similarity=0.435 Sum_probs=187.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
+.|+++||+|+|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 6 ~~~~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD----SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEEESSTT----SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CceeEEEEEEEeCCC----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999311 2579999999999999999999999999999999999999999999999999864 34556
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.+||+||++.+++ .||+||+.++.. ... .++++++++.+++.+ ++..++++.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv 154 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLN-RSIIDNISLANP--GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRI 154 (247)
T ss_dssp HHHEEEECSSCCCTT-SBHHHHHTTTCT--TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHH
T ss_pred HhcEEEEeCCCcccc-ccHHHHHhccCC--CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHH
Confidence 788999999999987 599999987521 111 234566676666631 0234556789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||+|||+.+++.++++|+++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 155 ~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 155 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999987679999999999999875 999999999999999999998654
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-50 Score=406.95 Aligned_cols=207 Identities=23% Similarity=0.368 Sum_probs=186.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. .++
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~ 66 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQ 66 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECS
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------Eec
Confidence 6999999999972 24699999999999999999999999999999999999999999998 246
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhc-C---CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLK-N---LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI 400 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~ 400 (568)
.+||+||++.+++.+||+||+.+..... + ...++.+++++++++.+||. +..++++.+||||||||++|||||+
T Consensus 67 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 67 SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT--HLAKREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG--GGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh--HHhcCChhhCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999864322 2 12344467789999999996 4789999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
.+|+++||||||+|||+.+++.++++|+++ ++ |+|||++|||+++++.+|||+++|++|+ ++.|+++++.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999986 44 8999999999999999999999999999 9999988873
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-50 Score=416.52 Aligned_cols=217 Identities=21% Similarity=0.417 Sum_probs=189.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|++ .+.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+
T Consensus 52 ~~i~~~~vs~~y~~-----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYAD-----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CCEEEEEEEEESST-----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred CeEEEEEEEEEcCC-----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence 36999999999963 3579999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++|||+||++.+|+. ||+||+.++.... . .+++.++++.+++.+ +...++++.+||||||||+
T Consensus 127 r~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~--~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFND-TIADNIRYGRVTA--G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHTEEEECSSCCCCSE-EHHHHHHTTSTTC--C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hcceEEEecCCccCcc-cHHHHHHhhcccC--C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 8999999999999964 9999999753221 1 123444444444421 1245677789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++|||||||+|||+.+++.+++.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999988778999999999999987 999999999999999999999875
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.3e-50 Score=403.82 Aligned_cols=209 Identities=20% Similarity=0.314 Sum_probs=189.7
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+|. ++|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++.. .....+
T Consensus 4 ~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred EEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 6999999986 2899999999999999999999999999999999999999 999999999853 344567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+++||+||++.+++.+||+||+.+.. ..+.. +++++++++.+||. +..++++.+||||||||++|||||+.+|
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~--~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALD--DKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp HHEEEECSCCCCCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCG--GGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred ceEEEECCCCccCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCCh--hHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999998752 22211 56788999999996 4789999999999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 404 K-------VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 404 ~-------lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
+ ++||||||+|||+.+++.++++|+++ ++|+|||++|||+++++.+|||+++|++|++++.|+++++.
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9 99999999999999999999999986 46999999999999999999999999999999999998874
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-50 Score=407.42 Aligned_cols=214 Identities=25% Similarity=0.372 Sum_probs=190.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+++++||+|+|++.. ..+.+|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. ++
T Consensus 1 ml~~~~l~~~y~~~~--~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~ 74 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG--YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YI 74 (263)
T ss_dssp CEEEEEEEEEEEEET--TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CT
T ss_pred CEEEEEEEEEeCCCC--ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hh
Confidence 478999999996310 01579999999999 9999999999999999999999999 9999999999988543 33 67
Q ss_pred ceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig-~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
++| |+||++.+ .+|++||+.++..++. ..+++++++++.++|.. +..++++++||||||||++|||||+.+|
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~----~~~~~~~~~l~~~gl~~-~~~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKG----LDRDLFLEMLKALKLGE-EILRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTC----CCHHHHHHHHHHTTCCG-GGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcc----hHHHHHHHHHHHcCCCh-hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 899 99999887 7899999998765542 12456889999999961 3789999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCC-EEEEEECCEEEeecCHHHHHHh
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD-RLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~d-ri~il~~G~l~~~g~~~~l~~~ 473 (568)
+++||||||+|||+.+++.+++.|+++++ |||++|||++++..+|| |+++|++|++++.|+++++.+.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998765 99999999999999999 9999999999999999999754
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.5e-51 Score=406.26 Aligned_cols=215 Identities=20% Similarity=0.359 Sum_probs=187.0
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhh
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIY 323 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r 323 (568)
+++++||+|.|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....|
T Consensus 1 ml~~~~l~~~y~~-----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-----SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-----SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeCC-----CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 4789999999942 2569999999999999999999999999999999999999999999999999854 223457
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcc-----------cccCCCCChhHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVA-----------DKQAGKYSGGMKRR 392 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~~LSgG~kqr 392 (568)
+++||+||++.+++. ||+||+.++.. .... +++++++++.+++.+ .. ++++.+||||||||
T Consensus 76 ~~i~~v~q~~~l~~~-tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~--~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 76 SQIGFVSQDSAIMAG-TIRENLTYGLE-GDYT----DEDLWQVLDLAFARS--FVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTCCEECCSSCCCCE-EHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTT--TTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred hhEEEEcCCCccccc-cHHHHHhhhcc-CCCC----HHHHHHHHHHhChHH--HHHhCccchhchhccCcCcCCHHHHHH
Confidence 789999999999884 99999987422 1111 345778888888853 33 34568999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
++|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++ .|||+++|++|++++.|+++++.+
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998767999999999999986 599999999999999999999865
Q ss_pred h
Q 008362 473 R 473 (568)
Q Consensus 473 ~ 473 (568)
.
T Consensus 227 ~ 227 (243)
T 1mv5_A 227 T 227 (243)
T ss_dssp H
T ss_pred c
Confidence 3
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-50 Score=396.92 Aligned_cols=202 Identities=18% Similarity=0.332 Sum_probs=180.6
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+|+++||+|+|+ + ++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..
T Consensus 8 ~~~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~ 76 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KV 76 (214)
T ss_dssp -CEEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GG
T ss_pred CceEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hh
Confidence 45899999999996 4 6999999999999999999999999999999999999999999999999885 25
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
++.+||+||++.+++.+||+||+.++...++. ..+ +++++++++.+++.+ . ++++.+||||||||++|||||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~--~-~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLD--L-KKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCC--T-TSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCc--C-CCChhhCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999987665543 223 567899999999973 6 999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
|+++||||||+|||+.+++.+++.|++++ +|+|||++||++++++.+|||++++ .|++
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999864 5899999999999999999998654 4554
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.4e-49 Score=399.15 Aligned_cols=218 Identities=22% Similarity=0.438 Sum_probs=186.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
.+|+++||++.|++.. .+.+|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.++|+++.. ....+
T Consensus 16 ~~l~i~~l~~~y~~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT---NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCC---SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCC---cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHH
Confidence 3699999999997421 24699999999999999999999999999999999999987 8999999999854 34557
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+.+||+||++.+++ .||+||+.+.. . ... ++++.++++.+++.+ +...++++.+||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~-~tv~enl~~~~-~-~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv 164 (260)
T 2ghi_A 92 RSIIGIVPQDTILFN-ETIKYNILYGK-L-DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRI 164 (260)
T ss_dssp HTTEEEECSSCCCCS-EEHHHHHHTTC-T-TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHH
T ss_pred hccEEEEcCCCcccc-cCHHHHHhccC-C-CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHH
Confidence 788999999999987 59999998742 1 111 234566777776531 0113567889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||+|||+.+++.+++.|+++++|+|||++||++++++. |||+++|++|++++.|+++++.+.
T Consensus 165 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 165 AIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS-AESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999999988778999999999999874 999999999999999999998754
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=419.43 Aligned_cols=214 Identities=23% Similarity=0.385 Sum_probs=191.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+|+|++. ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .....
T Consensus 18 ~~i~~~~l~~~y~~~----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEG----GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp CCEEEEEEEEESSSS----SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CeEEEEEEEEEecCC----CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 469999999999531 3579999999999999999999999999999999999998 99999999999865 44556
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCC-----------CChhHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGK-----------YSGGMKR 391 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~-----------LSgG~kq 391 (568)
|+.+||+||++.+|+ +||+||+.++.. ..++++.++++.++|. ++.++++.+ |||||||
T Consensus 93 rr~ig~v~Q~~~lf~-~tv~enl~~~~~-------~~~~~v~~~l~~~~L~--~~~~~~p~~l~~~i~~~g~~LSGGqrQ 162 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFS-GTFRKNLDPNAA-------HSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVDGGCVLSHGHKQ 162 (390)
T ss_dssp HHTEEEESCCCCCCS-EEHHHHHCTTCC-------SCHHHHHHHHHHTTCH--HHHTTSTTGGGCEECTTTTTSCHHHHH
T ss_pred hCCEEEEcCCcccCc-cCHHHHhhhccc-------cCHHHHHHHHHHhCCH--HHHhhcccccccccccccccCCHHHHH
Confidence 889999999999998 699999974321 1245678899999996 478889888 9999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHH
Q 008362 392 RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELK 471 (568)
Q Consensus 392 rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~ 471 (568)
||+|||||+.+|+++||||||+|||+..++++++.|++..+++|+|++||+++.+ ..||||++|++|++++.|+++++.
T Consensus 163 RvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 163 LMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877789999999998765 569999999999999999999987
Q ss_pred Hh
Q 008362 472 AR 473 (568)
Q Consensus 472 ~~ 473 (568)
++
T Consensus 242 ~~ 243 (390)
T 3gd7_A 242 HY 243 (390)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.5e-48 Score=386.27 Aligned_cols=205 Identities=20% Similarity=0.344 Sum_probs=172.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|+++||+|.|++. ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEG----GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 69 (229)
T ss_dssp EEEEEEEEEECSSTT----SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----------
T ss_pred ceEEEEEEEEEeCCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----------
Confidence 479999999999631 35799999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||+||++.+++. ||+||+.++... .. .+.++.++.+++.+ ....++++.+||||||||++
T Consensus 70 -~i~~v~q~~~~~~~-tv~enl~~~~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 70 -RISFCSQFSWIMPG-TIKENIIFGVSY---DE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp -CEEEECSSCCCCSB-CHHHHHHTTSCC---CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred -EEEEEecCCcccCC-CHHHHhhccCCc---Ch----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 38999999999886 999999874321 11 12233333333321 01234567899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|||||+.+|+++||||||+|||+.+++.+++.+ ++..+|+|||++||+++++.. |||+++|++|++++.|+++++.++
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH-CSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh-CCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999999974 555568999999999999875 999999999999999999998653
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.2e-48 Score=384.24 Aligned_cols=207 Identities=24% Similarity=0.417 Sum_probs=173.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
+|+++||+|.|++. ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~----~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------ 66 (237)
T 2cbz_A 3 SITVRNATFTWARS----DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66 (237)
T ss_dssp CEEEEEEEEESCTT----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------
T ss_pred eEEEEEEEEEeCCC----CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------
Confidence 58999999999731 25699999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHH---HHHHcCCCC---CCcccccCCCCChhHHHHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEE---SLKSVNLFH---GGVADKQAGKYSGGMKRRLSVAIS 398 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~---~l~~~~L~~---~~~~~~~~~~LSgG~kqrl~la~A 398 (568)
.+||+||++.+ +.+|++||+.++... ..+. .+++.+ +.+.+++.+ ....++++.+||||||||++||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 38999999875 478999999875432 1111 122222 222333321 013578899999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 399 LIGNPKVVYMDEPSTGLDPASRNNLWNVVK---RAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 399 l~~~p~lllLDEPtsgLD~~~r~~i~~~l~---~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
|+.+|+++||||||+|||+.+++.+++.+. +.++|+|||++||++++++ .|||+++|++|++++.|+++++.+.
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999995 3456899999999999986 6999999999999999999998764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-46 Score=420.78 Aligned_cols=219 Identities=19% Similarity=0.408 Sum_probs=191.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK----EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415 (582)
T ss_pred CeEEEEEEEEEcCCC----CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH
Confidence 469999999999741 2569999999999999999999999999999999999999999999999999864 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.++.. .+. .+++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GEY----TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CCC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 8899999999999985 99999997531 111 2355777777777642 0123455689999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+.+.|++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877999999999999987 6999999999999999999999764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.5e-47 Score=421.72 Aligned_cols=218 Identities=24% Similarity=0.413 Sum_probs=189.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+..
T Consensus 338 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN----EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CCEEEEEEEECSCSS----SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCC----CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 469999999999742 3579999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+... .. .++++.++++..++.+ +...+++..+||||||||+
T Consensus 414 r~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv 486 (578)
T 4a82_A 414 RNQIGLVQQDNILFSD-TVKENILLGRP--TA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 486 (578)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHGGGCS--SC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred hhheEEEeCCCccCcc-cHHHHHhcCCC--CC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHH
Confidence 8999999999999987 99999987421 11 1234555666655421 1234556679999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||||||+.+++.+.+.+++.++++|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 487 ~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 487 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999765
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-46 Score=421.72 Aligned_cols=220 Identities=24% Similarity=0.459 Sum_probs=187.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhc
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYT 324 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~ 324 (568)
|+++||+++|+++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +.+.+|+
T Consensus 342 i~~~~v~~~y~~~~---~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 342 LEFKNVHFAYPARP---EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp EEEEEEEEECSSCT---TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred EEEEEEEEEeCCCC---CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 99999999997421 2469999999999999999999999999999999999999999999999999965 4566788
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHHH
Q 008362 325 SMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~l 395 (568)
++||+||++.+|+. |++||+.++.... .+..+++++++++.+++.+ +...+++..+||||||||++|
T Consensus 419 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~i 494 (595)
T 2yl4_A 419 KIGTVSQEPILFSC-SIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494 (595)
T ss_dssp SEEEECSSCCCCSS-BHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHH
T ss_pred ceEEEccCCcccCC-CHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 99999999999985 9999999853221 0112456778888887631 012334458999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
||||+.+|++++|||||+|||+.+++.+++.+++..+|+|+|++||++++++. ||||++|++|++++.|+++++.++
T Consensus 495 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEEEEEETTEEEEEECSCC----
T ss_pred HHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999998779999999999999875 999999999999999999998764
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-46 Score=420.43 Aligned_cols=219 Identities=21% Similarity=0.411 Sum_probs=191.2
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. +.+..
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR----EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 415 (582)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHH
Confidence 469999999999731 2569999999999999999999999999999999999999999999999999965 45667
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.++.. .+.+ +++++++++.+++.+ +...+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl 489 (582)
T 3b60_A 416 RNQVALVSQNVHLFND-TVANNIAYART-EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489 (582)
T ss_dssp HHTEEEECSSCCCCSS-BHHHHHHTTTT-SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHH
T ss_pred HhhCeEEccCCcCCCC-CHHHHHhccCC-CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8899999999999985 99999997531 1111 345677777777631 1234556789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||+|||+.+++.+++.+++..+|+|+|++||+++.++ .||||++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 999999999999999999999999999999999998777999999999999987 6999999999999999999999765
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-46 Score=419.04 Aligned_cols=218 Identities=24% Similarity=0.443 Sum_probs=188.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 340 ~~i~~~~v~~~y~~~----~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN----TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CCEEEEEEEECSSSS----SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CcEEEEEEEEEcCCC----CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 469999999999642 3579999999999999999999999999999999999999999999999999965 45677
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+.... .+. +++.+.++..++.+ +...++++.+||||||||+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRED--ATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCSS--CCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCCC--CCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 8999999999999976 999999874321 111 23333444333310 1356788899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++++|||||++||+.+++.+.+.+++..+|+|+|++||+++.+. .||||++|++|++++.|+++++.++
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998888999999999999986 7999999999999999999999765
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-46 Score=421.60 Aligned_cols=217 Identities=22% Similarity=0.434 Sum_probs=187.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|++ ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 353 ~~i~~~~v~~~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK-----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CCEEEEEEECCSSS-----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEECCC-----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 35999999999974 3569999999999999999999999999999999999999999999999999965 55678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+. |++||+.+... +.+. +++.++++.+++.+ +...+++..+||||||||+
T Consensus 428 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv 500 (598)
T 3qf4_B 428 RSSIGIVLQDTILFST-TVKENLKYGNP--GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLL 500 (598)
T ss_dssp HHHEEEECTTCCCCSS-BHHHHHHSSST--TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHH
T ss_pred HhceEEEeCCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 8899999999999975 99999987421 1122 33555565555531 0122334479999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++||||||||||+.+++.+.+.+++..+|+|+|++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 501 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988789999999999999976 999999999999999999999875
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.2e-45 Score=374.19 Aligned_cols=199 Identities=21% Similarity=0.332 Sum_probs=156.5
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..++++||++.+ +.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~--------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------- 99 (290)
T ss_dssp -----------C--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----------
T ss_pred ceEEEEEEEEcC--------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----------
Confidence 469999999853 3599999999999999999999999999999999999999999999998
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHHH
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRLS 394 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl~ 394 (568)
++||+||++.+++. |++||+. ... ... ..+.+.++.+++.+ ....++++.+||||||||++
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~~---~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~ 169 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GVS---YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TTC---CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Ccc---cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHH
Confidence 38999999999885 9999997 321 111 12333444444421 01234456899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 395 VAISLIGNPKVVYMDEPSTGLDPASRNNLWNVV-KRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 395 la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l-~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
|||||+.+|+++||||||+|||+.+++.+++.+ ++.++|+|||++||+++++. .|||+++|++|++++.|+++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999999999999974 45556899999999999986 599999999999999999999854
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.2e-44 Score=429.10 Aligned_cols=224 Identities=25% Similarity=0.501 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++||+++|+.+ ++.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++ +.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~---~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER---PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CCEEEEEEEECCTTS---CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred CeEEEEEEEEeCCCC---CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 369999999999753 24579999999999999999999999999999999999999999999999999976 67889
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.||+. |++||+.++..- .+..++++.++++..++.+ +........+||||||||+
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld~----~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLDP----SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSCT----TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCCC----CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 9999999999999997 999999864211 1223456777888777631 0122334467999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+|||||||||+||+++.+.+.+.|++..+|+|+|+++|.++.+.. ||||++|++|++++.|++++|.++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHC
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999988889999999999999875 999999999999999999999987
Q ss_pred cCC
Q 008362 474 YGG 476 (568)
Q Consensus 474 ~~~ 476 (568)
-|.
T Consensus 1306 ~g~ 1308 (1321)
T 4f4c_A 1306 KGA 1308 (1321)
T ss_dssp C--
T ss_pred CcH
Confidence 443
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.7e-42 Score=414.95 Aligned_cols=220 Identities=28% Similarity=0.493 Sum_probs=188.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 386 g~i~~~~v~~~y~~~~---~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRK---EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCEEEEEEEECCSSTT---SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CeEEEEEEEEEcCCCC---CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence 3599999999997431 3579999999999999999999999999999999999999999999999999965 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCC-------C--CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLF-------H--GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-------~--~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.+|+. |++||+.++.. ..+. +++.++++..++. + +....++..+||||||||+
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE--DVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS--SCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC--CCCH----HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 8899999999999987 99999998632 1122 2333333333321 0 1234567789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|+++|||||||+||+.+++.+.+.+++..+|+|+|++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHT
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999976 999999999999999999999765
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 615 ~ 615 (1284)
T 3g5u_A 615 K 615 (1284)
T ss_dssp T
T ss_pred C
Confidence 3
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-42 Score=416.49 Aligned_cols=222 Identities=21% Similarity=0.444 Sum_probs=188.6
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..++++||+++|+++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.. +.+.+
T Consensus 1029 g~i~~~~v~~~y~~~~---~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP---SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CCEEEEEEEBCCSCGG---GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHH
T ss_pred CcEEEEEEEEECCCCC---CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHH
Confidence 3599999999997431 3469999999999999999999999999999999999999999999999999975 56678
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|+++||+||++.+|+ .|++||+.+.......+. +++.+.++..++.+ +........+||||||||+
T Consensus 1106 r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv 1180 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRI 1180 (1284)
T ss_dssp TTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHH
T ss_pred HhceEEECCCCcccc-ccHHHHHhccCCCCCCCH----HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHH
Confidence 899999999999887 599999987533222222 23444444444321 0122345578999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+|||||+.+|++|||||||+|||+.+++.+.+.|++..+|+|||++||+++++.. ||||++|++|++++.|+++++.++
T Consensus 1181 ~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1181 AIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999888789999999999999865 999999999999999999999876
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
.
T Consensus 1260 ~ 1260 (1284)
T 3g5u_A 1260 K 1260 (1284)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.3e-42 Score=414.14 Aligned_cols=220 Identities=24% Similarity=0.448 Sum_probs=192.9
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRI 322 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~ 322 (568)
..|+++|++++|+++ +++++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|+|++. +.+.+
T Consensus 414 g~I~~~nvsF~Y~~~---~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR---PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCEEEEEEEECCSSS---TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CcEEEEEeeeeCCCC---CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 359999999999753 24689999999999999999999999999999999999999999999999999976 67788
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCC---------CCcccccCCCCChhHHHHH
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFH---------GGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~~~LSgG~kqrl 393 (568)
|++||||||++.||+. |++||+.++.. ...++++.++++..++.+ +.....+..+||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~------~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE------GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT------TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc------cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 9999999999999987 99999987521 112345666666665421 1234456678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHh
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKAR 473 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~ 473 (568)
+||||++.+|+++|||||||+||+.+++.+.+.|.++.+|+|+|++||++..+. .||+|++|++|++++.|+.++|.++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~ 642 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQ 642 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHh
Confidence 999999999999999999999999999999999999888999999999999886 5999999999999999999999875
Q ss_pred c
Q 008362 474 Y 474 (568)
Q Consensus 474 ~ 474 (568)
-
T Consensus 643 ~ 643 (1321)
T 4f4c_A 643 Q 643 (1321)
T ss_dssp T
T ss_pred h
Confidence 4
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-41 Score=377.21 Aligned_cols=205 Identities=24% Similarity=0.312 Sum_probs=181.1
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ ..++++||++++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~~-------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------ 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS-------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------ 415 (607)
T ss_dssp CEEEEECCEEEECSS-------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------
T ss_pred ceEEEEeceEEEecc-------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------
Confidence 357999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.++||+||+..+.+.+||.|++....... ....++++++++.+++. +..++++++|||||||||+|||||+.+
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~----~~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSSK----LNSNFYKTELLKPLGII--DLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH----HHCHHHHHHTHHHHTCT--TTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhccC----CCHHHHHHHHHHHcCCc--hHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 246999999988878899999887641110 01135678899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRA--KQGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~--~~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
|+++||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+|||+++|++ |++...|+++++..
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999986 3599999999999999999999999986 88888999988764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-41 Score=372.94 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=180.3
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|+++.|++ ..++++||+|++||++||+||||||||||+|+|+|+.+|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------ 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS-------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------ 345 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------
T ss_pred CeEEEEeeEEEEECC-------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------
Confidence 357999999999963 3799999999999999999999999999999999999999999975
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
...+||+||+....+.+||.|++....... .. ..++++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-~~---~~~~~~~~l~~~~l~--~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASK-LN---SNFYKTELLKPLGII--DLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-HT---CHHHHHHTTTTTTCG--GGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccC-CC---HHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 246999999988778899999887541110 01 135678899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
|++|||||||+|||+.+++.++++|+++. +|+|||++|||++++..+||||++|++ |++...|+++++..
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999863 499999999999999999999999996 78888999988764
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-41 Score=369.34 Aligned_cols=206 Identities=23% Similarity=0.287 Sum_probs=177.5
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
...++++|++|.|++ ..+++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~~-------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~---------- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD-------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK---------- 329 (538)
T ss_dssp CEEEEECCEEEEETT-------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC----------
T ss_pred cceEEEcceEEEECC-------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----------
Confidence 357999999999973 468888999999999999999999999999999999999999998765
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 323 YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 323 r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+.++|+||+......+||+||+.+..... .. .....++++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~l~~~~l~--~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDA-LS--TSSWFFEEVTKRLNLH--RLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSST-TC--TTSHHHHHTTTTTTGG--GCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhc-cc--hhHHHHHHHHHHcCCH--HHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 35899999977667889999998742211 11 1234578899999996 478999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELK 471 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~ 471 (568)
|++|||||||+|||+.+++.++++|+++. .|+|||++|||++++..+||||++|++ |+....+++..+.
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999863 589999999999999999999999986 5566666665543
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.3e-40 Score=365.11 Aligned_cols=198 Identities=25% Similarity=0.344 Sum_probs=165.9
Q ss_pred eEEE--------EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--------
Q 008362 245 AIIS--------DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 308 (568)
Q Consensus 245 ~i~~--------~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-------- 308 (568)
+|++ +||+|+|++ ...+++|+| ++++||++||+||||||||||+|+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred eEEEecCCccccCCeEEEECC-----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 5888 889999974 125999999 999999999999999999999999999999999996
Q ss_pred -EECCeeCCCcHH---HhhcceEEEcCCCCCCC---CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccccc
Q 008362 309 -YVQGLDIRTDMD---RIYTSMGVCPQEDLLWE---TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQ 381 (568)
Q Consensus 309 -~i~G~~i~~~~~---~~r~~ig~~~Q~~~l~~---~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 381 (568)
.++|.++..... ..+..+++++|+..+.+ ..|++|++... . ..++++++++.+||. +..+++
T Consensus 157 ~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-----~~~~~~~~L~~lgL~--~~~~~~ 225 (607)
T 3bk7_A 157 RAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D-----EVGKFEEVVKELELE--NVLDRE 225 (607)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C-----CSSCHHHHHHHTTCT--TGGGSB
T ss_pred heeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H-----HHHHHHHHHHHcCCC--chhCCC
Confidence 456665532111 12346889999743322 13999998631 1 123578899999997 478999
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 382 AGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+++|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++ ++|+|||++|||++++..+||||++|+++
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999999999999999999999986 46999999999999999999999999864
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-39 Score=359.84 Aligned_cols=197 Identities=23% Similarity=0.309 Sum_probs=162.6
Q ss_pred EEE-EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE---------EECCeeC
Q 008362 246 IIS-DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA---------YVQGLDI 315 (568)
Q Consensus 246 i~~-~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i---------~i~G~~i 315 (568)
.++ +||+|+|++ ...+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 21 ~~~~~~ls~~yg~-----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~ 94 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94 (538)
T ss_dssp ---CCCEEEECST-----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTH
T ss_pred hhHhcCcEEEECC-----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccH
Confidence 445 699999974 125899999 999999999999999999999999999999999995 3566554
Q ss_pred CCcHH---HhhcceEEEcCCCCCCCC---CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 316 RTDMD---RIYTSMGVCPQEDLLWET---LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 316 ~~~~~---~~r~~ig~~~Q~~~l~~~---lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
..... ..+..+++++|+..+++. .|+.|++... +..++++++++.+|+. +..++++++|||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---------~~~~~~~~~l~~lgl~--~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---------DETGKLEEVVKALELE--NVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---------CSSSCHHHHHHHTTCT--TTTTSBGGGCCHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---------hHHHHHHHHHHHcCCC--hhhhCChhhCCHHH
Confidence 32111 123468999997544332 3899987531 1123578899999997 47899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
||||+||+||+.+|++|||||||++||+.+++.++++|+++ ++|+|||++|||++++..+||||++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999986 46999999999999999999999999864
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-39 Score=358.90 Aligned_cols=201 Identities=23% Similarity=0.303 Sum_probs=172.4
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSG-----ECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~G-----ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+++++.|++ .+.+++|+||++++| |++||+||||||||||+|+|+|+.+|++|+. +. +
T Consensus 350 ~~~~~~y~~-----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~ 412 (608)
T 3j16_B 350 ASRAFSYPS-----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------K 412 (608)
T ss_dssp SSSCCEECC-----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------S
T ss_pred cceeEEecC-----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------C
Confidence 556777863 245899999999999 8899999999999999999999999999962 21 2
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
..++|+||+.......|++|++... .++.. ...+.++++++.++|. +.+++++.+|||||||||+|||||+.+|
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~--~~~~~~~~~l~~l~l~--~~~~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKK--IRGQF--LNPQFQTDVVKPLRID--DIIDQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHH--CSSTT--TSHHHHHHTHHHHTST--TTSSSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEecccccccCCccHHHHHHHH--hhccc--ccHHHHHHHHHHcCCh--hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 4699999997766667999987532 22211 1134567889999997 4899999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEEC--CEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVD--GSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~--G~l~~~g~~~~l~~ 472 (568)
++|||||||+|||+.+++.++++|+++ + +|+|||++|||++++..+||||++|++ |++...|+|+++..
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 999999999999999999999999986 3 599999999999999999999999996 89999999988865
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.4e-39 Score=371.46 Aligned_cols=207 Identities=24% Similarity=0.342 Sum_probs=166.7
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHh
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRI 322 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~ 322 (568)
..+++++|+++.|++. ++++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 669 ~~mL~v~nLs~~Y~g~----~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--------- 735 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGT----SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--------- 735 (986)
T ss_dssp SEEEEEEEEEECCTTC----SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT---------
T ss_pred CceEEEEeeEEEeCCC----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc---------
Confidence 3479999999999642 256999999999999999999999999999999999999999999999862
Q ss_pred hcceEEEcCCCCC----CCCCCHHHHHHHHhh------------------------------------------------
Q 008362 323 YTSMGVCPQEDLL----WETLTGREHLLFYGR------------------------------------------------ 350 (568)
Q Consensus 323 r~~ig~~~Q~~~l----~~~lTv~e~l~~~~~------------------------------------------------ 350 (568)
.++||++|++.. ..+.|+.|++.+...
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 136777775421 123466665543110
Q ss_pred -----------------------------------------------------hcCCCchhHHHHHHHHHHHcCCCCCCc
Q 008362 351 -----------------------------------------------------LKNLKGPALTQAVEESLKSVNLFHGGV 377 (568)
Q Consensus 351 -----------------------------------------------------l~~~~~~~~~~~~~~~l~~~~L~~~~~ 377 (568)
..+......+++++++++.+||.+ +.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~-~~ 893 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP-EI 893 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH-HH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc-hh
Confidence 001011112456888999999962 23
Q ss_pred -ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 378 -ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 378 -~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
.++++++|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|++. +.|||++|||++++..+|||+++|
T Consensus 894 ~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL 971 (986)
T 2iw3_A 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAV 971 (986)
T ss_dssp HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECC
T ss_pred hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEE
Confidence 58899999999999999999999999999999999999999999999998765 579999999999999999999999
Q ss_pred ECCEEEeecC
Q 008362 457 VDGSLQCIGN 466 (568)
Q Consensus 457 ~~G~l~~~g~ 466 (568)
++|+++..|+
T Consensus 972 ~~G~Iv~~G~ 981 (986)
T 2iw3_A 972 KDGRMTPSGH 981 (986)
T ss_dssp BTTBCCC---
T ss_pred ECCEEEEeCC
Confidence 9999987774
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.9e-38 Score=362.71 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=173.1
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
..+...|++|.|++ +.+|+|+||++++||++||+||||||||||+|+|+| |+| +|.+... +
T Consensus 434 ~~L~~~~ls~~yg~------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~ 494 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----E 494 (986)
T ss_dssp CEEEEEEEEEEETT------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----T
T ss_pred ceeEEeeEEEEECC------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----c
Confidence 35777899999973 579999999999999999999999999999999995 543 5544321 1
Q ss_pred cceEEEcCCC-CCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 324 TSMGVCPQED-LLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 324 ~~ig~~~Q~~-~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
.+++|++|+. .+++.+|+.||+.+ ...+. +++++++++.+|+.. +..++++++||||||||++|||||+.+
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~-~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTD-EMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCH-HHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred eeEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 2478999984 67889999999975 22221 567889999999952 367999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEE-eecCHHHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQ-CIGNPKELKA 472 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~-~~g~~~~l~~ 472 (568)
|++|||||||+|||+.+++.++++|++ +|+|||++|||++++..+|||+++|++|+++ ..|+++++.+
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999988 6999999999999999999999999999997 6899988753
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-38 Score=360.29 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=142.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhCCCCCC-------ceEEEECCeeC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFI---------------------SMMIGITRTT-------SGTAYVQGLDI 315 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll---------------------~~l~Gl~~p~-------~G~i~i~G~~i 315 (568)
+++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.+.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 9999999999 45566666554
Q ss_pred CCcHHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHhhhcCCC--chhHH------HHHHHHHH
Q 008362 316 RTDMDRIYTSMGVCPQEDL-------------------LWETLTGREHLLFYGRLKNLK--GPALT------QAVEESLK 368 (568)
Q Consensus 316 ~~~~~~~r~~ig~~~Q~~~-------------------l~~~lTv~e~l~~~~~l~~~~--~~~~~------~~~~~~l~ 368 (568)
.. ..++.+|+++|... .++.+|++||+.++..+.... ..... .+..++++
T Consensus 111 ~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 111 SR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred hc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 32 12344555555432 346789999998754332111 00000 01123588
Q ss_pred HcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHH
Q 008362 369 SVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEE 445 (568)
Q Consensus 369 ~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e 445 (568)
.+||.+ ...++++.+|||||||||+|||||+.+|+ +|||||||+||||.+++.++++|+++ ++|+|||++|||+++
T Consensus 188 ~~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 188 NVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HTTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HcCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 899963 34789999999999999999999999998 99999999999999999999999986 469999999999998
Q ss_pred HHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 446 AEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 446 ~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+.. |||+++| ++|++++.|+++++.+
T Consensus 267 ~~~-~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 267 MLA-ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp HHH-CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred Hhh-CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 874 9999999 8999999999998864
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-36 Score=335.61 Aligned_cols=201 Identities=22% Similarity=0.312 Sum_probs=156.1
Q ss_pred eEEEEe--------EEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--------
Q 008362 245 AIISDN--------LRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-------- 308 (568)
Q Consensus 245 ~i~~~~--------l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-------- 308 (568)
+|++.| ++++|+. +...+++++ .+++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~-----~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~ 142 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSA-----NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQE 142 (608)
T ss_dssp CEEEEEESSSSSTTEEEECST-----TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHH
T ss_pred ceEEecCChhhcCCeEEEECC-----CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhh
Confidence 566655 4677763 234777777 689999999999999999999999999999999998
Q ss_pred ---EECCeeCCCcH-HHhhcce--EEEcCCCCC------CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCC
Q 008362 309 ---YVQGLDIRTDM-DRIYTSM--GVCPQEDLL------WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGG 376 (568)
Q Consensus 309 ---~i~G~~i~~~~-~~~r~~i--g~~~Q~~~l------~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~ 376 (568)
.+.|.++.... ....+.+ .+.+|.... -+..++.+++... .++..++++++++.+||. +
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~~~~~~~~~~~l~~~gl~--~ 213 (608)
T 3j16_B 143 IIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR-------MEKSPEDVKRYIKILQLE--N 213 (608)
T ss_dssp HHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH-------CCSCHHHHHHHHHHHTCT--G
T ss_pred hhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh-------hhhHHHHHHHHHHHcCCc--c
Confidence 33343322111 1112222 344554221 1223566655432 112245788999999996 4
Q ss_pred cccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~i 455 (568)
..++++.+||||||||++||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||+++++..+||||++
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999974 599999999999999999999999
Q ss_pred EECCE
Q 008362 456 FVDGS 460 (568)
Q Consensus 456 l~~G~ 460 (568)
|.+|.
T Consensus 294 l~~~~ 298 (608)
T 3j16_B 294 IYGVP 298 (608)
T ss_dssp EESCT
T ss_pred EeCCc
Confidence 98764
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.6e-36 Score=339.62 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=156.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------CCCCCCceEEEECCeeCCCcHH-
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI----------------------GITRTTSGTAYVQGLDIRTDMD- 320 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~----------------------Gl~~p~~G~i~i~G~~i~~~~~- 320 (568)
+.+|+||||+|++||++||+||||||||||+++|. |+.++ +|.+.++|.++.....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998753 44444 4689999887742110
Q ss_pred ---H-------------------h-------------------hcceEEEcCCCCCCC----------------------
Q 008362 321 ---R-------------------I-------------------YTSMGVCPQEDLLWE---------------------- 337 (568)
Q Consensus 321 ---~-------------------~-------------------r~~ig~~~Q~~~l~~---------------------- 337 (568)
. . ....|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0 0 011244444333322
Q ss_pred ----------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---C
Q 008362 338 ----------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---K 404 (568)
Q Consensus 338 ----------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~ 404 (568)
.+|++||+.+.... ...++..+.++.+++.. ...++++.+|||||||||+|||||+.+| +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~------~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ 566 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI------PKIKRKLETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 566 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC------HHHHHHHHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh------hhHHHHHHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCc
Confidence 47999999886432 12345667888999963 4578999999999999999999999887 5
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+|||||||+||||.+++.++++|+++ ++|+|||++|||++++. .||||++| ++|++++.|+++++.+
T Consensus 567 llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 567 LYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999986 46999999999999985 59999999 8999999999999965
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-36 Score=335.62 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=152.6
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEE-eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-----------EECCeeCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLAL-PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-----------YVQGLDIR 316 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i-~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-----------~i~G~~i~ 316 (568)
++.+.+||. ..++-..|.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.++.
T Consensus 3 ~~~~~~~~~-------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 3 GEVIHRYKV-------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75 (538)
T ss_dssp CCEEEESST-------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred CCCceecCC-------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH
Confidence 356778974 2344444544 5999999999999999999999999999999998 67777663
Q ss_pred CcHHH-hh--cceEEEcCC----CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 317 TDMDR-IY--TSMGVCPQE----DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 317 ~~~~~-~r--~~ig~~~Q~----~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
..... .. ..+...+|. +.++. .|+.|++.-. +.+++++++++.+++. ...++++++|||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~---------~~~~~~~~~l~~l~l~--~~~~~~~~~LSgGe 143 (538)
T 3ozx_A 76 NYFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKI---------DERGKKDEVKELLNMT--NLWNKDANILSGGG 143 (538)
T ss_dssp HHHHHHHTTCCCEEEECSCTTGGGTTCC-SBHHHHHHHH---------CCSSCHHHHHHHTTCG--GGTTSBGGGCCHHH
T ss_pred HHHHHHhhcccchhhccchhhhhhhhcc-CcHHHHhhcc---------hhHHHHHHHHHHcCCc--hhhcCChhhCCHHH
Confidence 21111 11 223444444 23333 3788765421 1123567889999996 47899999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
||||+||+||+.+|++|||||||+|||+.+++.++++|+++++|+|||++||+++++..+||||.+|++|
T Consensus 144 ~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 144 LQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 9999999999999999999999999999999999999999877999999999999999999999999865
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=6.8e-34 Score=325.44 Aligned_cols=212 Identities=24% Similarity=0.317 Sum_probs=164.4
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHH-HhCCC-------CC-----------
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISM-MIGIT-------RT----------- 303 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~-l~Gl~-------~p----------- 303 (568)
...++++|+++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTR-----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEE-----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeee-----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 34699999974 16999999999999999999999999999996 76543 23
Q ss_pred -------Cce-------EEEECCeeCCCcH-----------HHhhc---------ceEEEcCC-----------------
Q 008362 304 -------TSG-------TAYVQGLDIRTDM-----------DRIYT---------SMGVCPQE----------------- 332 (568)
Q Consensus 304 -------~~G-------~i~i~G~~i~~~~-----------~~~r~---------~ig~~~Q~----------------- 332 (568)
.+| .|.++|.++.... +.+|+ ..||.++.
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 467 6889988774211 12221 12332221
Q ss_pred -----CCCC------------------------C--------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCC
Q 008362 333 -----DLLW------------------------E--------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHG 375 (568)
Q Consensus 333 -----~~l~------------------------~--------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~ 375 (568)
..++ . .+|+.|++.++.. ....+++.++++.+||..
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~------~~~~~~~~~~L~~~gL~~- 721 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD------ESAIFRALDTLREVGLGY- 721 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT------SHHHHHHHHHHHHTTCTT-
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc------chHHHHHHHHHHHcCCCc-
Confidence 1111 1 2455565555321 122346789999999963
Q ss_pred CcccccCCCCChhHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 376 GVADKQAGKYSGGMKRRLSVAISLIGN---PKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 376 ~~~~~~~~~LSgG~kqrl~la~Al~~~---p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
...++++.+|||||||||+||++|+.+ |+++||||||+|||+.+++.++++|+++ ++|.|||++|||++++ ..||
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD 800 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD 800 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence 246899999999999999999999996 7999999999999999999999999986 5799999999999999 6799
Q ss_pred EEEEE------ECCEEEeecCHHHHHHh
Q 008362 452 RLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 452 ri~il------~~G~l~~~g~~~~l~~~ 473 (568)
||++| ++|++++.|+++++.+.
T Consensus 801 rii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 801 WVLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99999 79999999999998654
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.5e-33 Score=323.17 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=166.8
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCC-------CCCce---------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GIT-------RTTSG--------- 306 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~-------~p~~G--------- 306 (568)
..++++|+++ .+|+||||+|++||++||+|+||||||||+++|. |.+ .+..|
T Consensus 628 ~~L~v~~l~~-----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888851 2699999999999999999999999999999853 211 12333
Q ss_pred ----EEEECCeeCCC----cHH-------Hh---------hcceEEEcCCCCCC----------------------C---
Q 008362 307 ----TAYVQGLDIRT----DMD-------RI---------YTSMGVCPQEDLLW----------------------E--- 337 (568)
Q Consensus 307 ----~i~i~G~~i~~----~~~-------~~---------r~~ig~~~Q~~~l~----------------------~--- 337 (568)
.|.++|.++.. ... .+ .+.+||+||...+. +
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 47888877632 110 11 13468888854321 0
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 338 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 338 -----------------------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.+|+.|++.++... .. .++..++++.+||.. ...++++.+||||
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~-----~~-~~~~~~~L~~~gL~~-~~l~~~~~~LSGG 849 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI-----PK-IKRKLETLYDVGLGY-MKLGQPATTLSGG 849 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC-----HH-HHHHHHHHHHTTCSS-SBTTCCGGGCCHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc-----hh-HHHHHHHHHHcCCCc-ccccCchhhCCHH
Confidence 46888888875432 11 234578999999963 3678999999999
Q ss_pred HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------EC
Q 008362 389 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 458 (568)
Q Consensus 389 ~kqrl~la~Al~~~p---~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~ 458 (568)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|.|||++|||++++. .||||++| ++
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEEcCCCCCCC
Confidence 999999999999865 999999999999999999999999986 46999999999999985 79999999 78
Q ss_pred CEEEeecCHHHHHHh
Q 008362 459 GSLQCIGNPKELKAR 473 (568)
Q Consensus 459 G~l~~~g~~~~l~~~ 473 (568)
|++++.|+++++.+.
T Consensus 929 G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEV 943 (972)
T ss_dssp CSEEEEESHHHHHTC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999998753
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-33 Score=319.73 Aligned_cols=201 Identities=21% Similarity=0.337 Sum_probs=160.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHH---------HHHhCCCCCCc------e------EEEECCeeCCCc----H
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFI---------SMMIGITRTTS------G------TAYVQGLDIRTD----M 319 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll---------~~l~Gl~~p~~------G------~i~i~G~~i~~~----~ 319 (568)
.+|+||||+|++||++||+||||||||||+ +++.|...+.. | .+.+++.++... .
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 45555544433 2 244444443210 0
Q ss_pred -------HH-------------------------------hhcceEEEcCCCCCCC------------------------
Q 008362 320 -------DR-------------------------------IYTSMGVCPQEDLLWE------------------------ 337 (568)
Q Consensus 320 -------~~-------------------------------~r~~ig~~~Q~~~l~~------------------------ 337 (568)
+. ..+..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 00 0123577877766654
Q ss_pred --------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC---CEE
Q 008362 338 --------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP---KVV 406 (568)
Q Consensus 338 --------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p---~ll 406 (568)
.+|+.|++.|+... ....++.++|+.+||.. ...++++.+|||||||||+|||||+.+| +++
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred cCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 37889999886432 12356778999999963 3568999999999999999999999875 799
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHHh
Q 008362 407 YMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKAR 473 (568)
Q Consensus 407 lLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~~ 473 (568)
||||||+|||+.+++.++++|+++ ++|.|||++|||++++.. ||||++| ++|++++.|+++++.+.
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKN 903 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhC
Confidence 999999999999999999999986 469999999999999875 9999999 89999999999999764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=8.6e-33 Score=317.91 Aligned_cols=211 Identities=21% Similarity=0.323 Sum_probs=164.0
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-C----CCC---CCceE--------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-G----ITR---TTSGT-------- 307 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-G----l~~---p~~G~-------- 307 (568)
..++++|+++ .+|+||||+|++||++||+|+||||||||+++|. | .+. +..|.
T Consensus 646 ~~L~v~~l~~-----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~ 714 (993)
T 2ygr_A 646 RQLTVVGARE-----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLD 714 (993)
T ss_dssp SEEEEEEECS-----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCT
T ss_pred ceEEEecCcc-----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCcc
Confidence 4688998851 2699999999999999999999999999999853 2 221 23443
Q ss_pred -----EEECCeeCCC----cH-------HHh---------hcceEEEcCCCCCC----------------------C---
Q 008362 308 -----AYVQGLDIRT----DM-------DRI---------YTSMGVCPQEDLLW----------------------E--- 337 (568)
Q Consensus 308 -----i~i~G~~i~~----~~-------~~~---------r~~ig~~~Q~~~l~----------------------~--- 337 (568)
|.++|.++.. .. +.+ .+..||.||...+. +
T Consensus 715 ~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~ 794 (993)
T 2ygr_A 715 YLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVY 794 (993)
T ss_dssp TCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEE
T ss_pred ccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccce
Confidence 4555555421 11 011 13468888854321 1
Q ss_pred -----------------------------CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh
Q 008362 338 -----------------------------TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG 388 (568)
Q Consensus 338 -----------------------------~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG 388 (568)
.+|+.|++.++... .. .++..++++.+||.. ...++++.+||||
T Consensus 795 ~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~-----~~-~~~~~~~L~~lgL~~-~~l~~~~~~LSGG 867 (993)
T 2ygr_A 795 VPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI-----AG-VHRYLRTLVDVGLGY-VRLGQPAPTLSGG 867 (993)
T ss_dssp EECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC-----HH-HHHHHHHHHHTTGGG-SBTTCCGGGSCHH
T ss_pred eeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc-----hH-HHHHHHHHHHcCCCc-ccccCccccCCHH
Confidence 36788888775432 11 234578999999962 2578999999999
Q ss_pred HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCCEEEEE------EC
Q 008362 389 MKRRLSVAISLIGNP---KVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCDRLGIF------VD 458 (568)
Q Consensus 389 ~kqrl~la~Al~~~p---~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~dri~il------~~ 458 (568)
|||||+||+||+.+| +++||||||+|||+.+++.++++|+++ ++|.|||++|||++++. .||||++| ++
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIK-TSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEEECCCcCCCC
Confidence 999999999999865 999999999999999999999999986 46999999999999985 79999999 68
Q ss_pred CEEEeecCHHHHHHh
Q 008362 459 GSLQCIGNPKELKAR 473 (568)
Q Consensus 459 G~l~~~g~~~~l~~~ 473 (568)
|++++.|+++++.+.
T Consensus 947 G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV 961 (993)
T ss_dssp SEEEEEECHHHHHHC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.4e-36 Score=328.82 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=165.9
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-E-EEECCeeCCCcHH
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-T-AYVQGLDIRTDMD 320 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~-i~i~G~~i~~~~~ 320 (568)
.++++++||+|.|+ ++||++++||+++|+||||||||||+|+|+|+.+|++| + |+++| +
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~------ 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D------ 176 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C------
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C------
Confidence 34688899998883 68999999999999999999999999999999999999 9 99998 2
Q ss_pred HhhcceEEEcCCCC---CCCCCCHHHHHHHHhhh-cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 321 RIYTSMGVCPQEDL---LWETLTGREHLLFYGRL-KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 321 ~~r~~ig~~~Q~~~---l~~~lTv~e~l~~~~~l-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
.++.+||+||+.. +.+.+|++||+ +.... ++.. ..+++.++++.+|+.+ ..+ +.+|||||||||++|
T Consensus 177 -~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~--~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 177 -PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLER--INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp -TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSS--GGG--CHHHHHHHHHHHHHH
T ss_pred -ccCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCc--ccc--hhhhhHHHHHHHHHH
Confidence 3678999999984 44567999998 54432 2211 1234566788899963 444 889999999999999
Q ss_pred HH--HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH------HHHHhCCE-----EEEEE-
Q 008362 397 IS--LIGNPKV----VYMDE-PSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME------EAEALCDR-----LGIFV- 457 (568)
Q Consensus 397 ~A--l~~~p~l----llLDE-PtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~------e~~~l~dr-----i~il~- 457 (568)
|| |+.+|++ +|||| ||+|||+. ++.+.+++++. ++|+|++||+.+ +++.+||| |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 77777776654 788999999988 88899999 99999
Q ss_pred CCEEEeecCHHHHH
Q 008362 458 DGSLQCIGNPKELK 471 (568)
Q Consensus 458 ~G~l~~~g~~~~l~ 471 (568)
+|+++ .|+++++.
T Consensus 325 ~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 325 LDGVS-AVDDVYKR 337 (460)
T ss_dssp CTTCC-CCCHHHHH
T ss_pred CCcEE-ECCHHHHh
Confidence 99999 99998774
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=2.1e-31 Score=284.81 Aligned_cols=197 Identities=17% Similarity=0.213 Sum_probs=150.9
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC--------------------------------------CCce
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR--------------------------------------TTSG 306 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~--------------------------------------p~~G 306 (568)
.+++++||++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999977664 4578
Q ss_pred EEEECCeeCCC-cHHHhhc-ceEEEcCCCCCCCCCCHHHHHHHHhhhcCC----------------------C-------
Q 008362 307 TAYVQGLDIRT-DMDRIYT-SMGVCPQEDLLWETLTGREHLLFYGRLKNL----------------------K------- 355 (568)
Q Consensus 307 ~i~i~G~~i~~-~~~~~r~-~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~----------------------~------- 355 (568)
+++++|+++.. ....+.+ .+++++|++.++.. +..++..+.-..... .
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999864 2334444 48999999877653 565555543221100 0
Q ss_pred -------------------------------chhHHHHHHHHHHHcCCCCCCc---------------------cc----
Q 008362 356 -------------------------------GPALTQAVEESLKSVNLFHGGV---------------------AD---- 379 (568)
Q Consensus 356 -------------------------------~~~~~~~~~~~l~~~~L~~~~~---------------------~~---- 379 (568)
.+...+.+.+.++.+++..... ..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0112234555666666542000 00
Q ss_pred ---ccCCC-CChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE
Q 008362 380 ---KQAGK-YSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL 453 (568)
Q Consensus 380 ---~~~~~-LSgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri 453 (568)
++++. ||||||||++||++|+.+| ++|||||||+|||+..++.+.+.|+++.+|+|||++||+++.+. .|||+
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i 365 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHH 365 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEE
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeE
Confidence 33333 5999999999999999999 99999999999999999999999999878999999999998775 79999
Q ss_pred EEE----ECCEEEee
Q 008362 454 GIF----VDGSLQCI 464 (568)
Q Consensus 454 ~il----~~G~l~~~ 464 (568)
++| ++|+++..
T Consensus 366 ~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 366 YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEEEETTEEEEE
T ss_pred EEEEEeccCCceEEE
Confidence 999 99988654
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.96 E-value=1.7e-32 Score=267.17 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=105.6
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|. +.++.......++.+||+||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH--------H
Confidence 36799996 89999999999999999999999999 99999994 3333222223567899999986 4
Q ss_pred HHH-HHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 008362 343 EHL-LFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 343 e~l-~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~ 417 (568)
||+ .+. ..+..... .++++++++. ++ |||||++|||||+.+|+++||||||+|
T Consensus 77 enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl---------------Gq~qrv~lAraL~~~p~lllLDEPts~--- 134 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI---------------VEVAPLAYMRGRTLNDAFVILDEAQNT--- 134 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS---------------EEEEEGGGGTTCCBCSEEEEECSGGGC---
T ss_pred HHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC---------------chHHHHHHHHHHhcCCCEEEEeCCccc---
Confidence 444 221 11221111 2345555554 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q 008362 418 ASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 418 ~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~ 448 (568)
+++.++++|+++++|+||| +|||+++++.
T Consensus 135 -~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 -TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp -CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred -cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 8999999998875689999 9999998764
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.95 E-value=4.7e-28 Score=255.33 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=78.0
Q ss_pred cccCCCCChhHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhCC
Q 008362 379 DKQAGKYSGGMKRRLSVAISLI------GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~d 451 (568)
++++.+||||||||++||+||+ ++|+++||||||+||||.+++.++++|+++ ++|+|||++||++++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5788999999999999999999 899999999999999999999999999986 469999999999998 56799
Q ss_pred EEEEEECCEEEe
Q 008362 452 RLGIFVDGSLQC 463 (568)
Q Consensus 452 ri~il~~G~l~~ 463 (568)
|+++|++|++++
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.2e-27 Score=247.89 Aligned_cols=190 Identities=18% Similarity=0.208 Sum_probs=129.9
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----------------------------------------------
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT----------------------------------------------- 301 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~----------------------------------------------- 301 (568)
++++++.+| +++|+|||||||||++++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 568899999 99999999999999999999543
Q ss_pred ---CCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--------h----cC-CCchhHH----
Q 008362 302 ---RTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR--------L----KN-LKGPALT---- 360 (568)
Q Consensus 302 ---~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~--------l----~~-~~~~~~~---- 360 (568)
++.+|.++++|.++.. +.....+.+|+.||+..+...-++.+++..... . .. ...++..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3345788999988742 234455567877776554422223332211000 0 00 0000011
Q ss_pred -----------------HHHHHHHHHcCCCC----CCcccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Q 008362 361 -----------------QAVEESLKSVNLFH----GGVADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGL 415 (568)
Q Consensus 361 -----------------~~~~~~l~~~~L~~----~~~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgL 415 (568)
.+..+.++. ++.. .+..++++.+||||||||++||+||+ .+|+++||||||++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111222322 2210 12467788999999999999999997 789999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEE--EEEECCEE
Q 008362 416 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRL--GIFVDGSL 461 (568)
Q Consensus 416 D~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri--~il~~G~l 461 (568)
||..++.+++++++..+|++||++||+++ +..+||++ ++|.+|+-
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEeCCEE
Confidence 99999999999998877899999999964 56689987 77877754
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.94 E-value=8.7e-31 Score=279.02 Aligned_cols=174 Identities=13% Similarity=0.130 Sum_probs=143.6
Q ss_pred cceeeeeEEEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 264 KVAVNGLSLALPSGE--------------------CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 264 ~~al~~isl~i~~Ge--------------------i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
+.+++++|+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.++. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 579999999999999 99999999999999999999999999999999997652 1
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh--HHHHHHHHHHHcC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG--MKRRLSVAISLIG 401 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG--~kqrl~la~Al~~ 401 (568)
.++++|++ .++.+|+.|++.+.. . +.+++++++.+++.+ . +..+. |||| ||||+.+|+||+.
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~--~-~~~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYE--Y-DFFII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGG--C-SEEEE-EESSCCCHHHHHHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCc--c-CCeEE-eCCCCccHHHHHHHHHHHh
Confidence 27899985 577889999875431 1 134678899999852 3 34444 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHh------cC----CceEEEEcCCHHH--HHHhCCEEE-EEEC
Q 008362 402 ----------NPKVVYMDEPSTGLDPASRNNLWNVVKRA------KQ----GRAIILTTHSMEE--AEALCDRLG-IFVD 458 (568)
Q Consensus 402 ----------~p~lllLDEPtsgLD~~~r~~i~~~l~~~------~~----g~tiil~tH~~~e--~~~l~dri~-il~~ 458 (568)
+|++++|||||+||||..++++++.+++. +. ..+|+++||++++ ++.+||++. .|..
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 99999999999999999999999999875 22 3679999999998 999999984 4433
Q ss_pred C
Q 008362 459 G 459 (568)
Q Consensus 459 G 459 (568)
|
T Consensus 254 g 254 (413)
T 1tq4_A 254 Y 254 (413)
T ss_dssp G
T ss_pred c
Confidence 3
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=3e-28 Score=229.58 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=104.1
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC-CCCCHHHHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW-ETLTGREHLLF 347 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~-~~lTv~e~l~~ 347 (568)
|+||++++||+++|+||||||||||+|++.+ |...++ .+.++ |+++|++.-. ..-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~-------~d~~~---g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS-------SDFCR---GLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE-------HHHHH---HHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc-------cHHHH---HHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999653 211111 22232 6777764210 0001111111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH---------
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA--------- 418 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~--------- 418 (568)
..... ....+.. .........|||||||++||+|++.+|++++|||||+|||+.
T Consensus 64 -------------~~~~~-~~~~g~~---~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~ 126 (171)
T 4gp7_A 64 -------------YIVSK-RLQLGKL---TVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQV 126 (171)
T ss_dssp -------------HHHHH-HHHTTCC---EEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCC
T ss_pred -------------HHHHH-HHhCCCe---EEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCC
Confidence 11222 2234543 222344566999999999999999999999999999999999
Q ss_pred -------HHHHHHHHHHHh-cCCceEEEEcCCHHHHHH
Q 008362 419 -------SRNNLWNVVKRA-KQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 419 -------~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~ 448 (568)
.++.+++.++++ ++|.|+|++|||+++++.
T Consensus 127 ~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 127 EEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp CHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred CHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 668889988775 459999999999999986
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.94 E-value=4e-31 Score=256.65 Aligned_cols=176 Identities=11% Similarity=0.071 Sum_probs=128.7
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
.+.+++| .++++||+++|+||||||||||+|+|+|+++. +.+++..... .....++.+||+||++.+++.+|+
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 3568888 79999999999999999999999999999863 4444322111 112235779999999888888888
Q ss_pred HHHHHHH----h--hhcCCCchhHHHHHHHH------HHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 008362 342 REHLLFY----G--RLKNLKGPALTQAVEES------LKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409 (568)
Q Consensus 342 ~e~l~~~----~--~l~~~~~~~~~~~~~~~------l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD 409 (568)
.+++..+ . ..++.+.++.++++++. ++.+|+. +.+++++++|| ||+.+|++++||
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~~~~~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR--AIKKTMPEAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH--HHHHHCTTSEE-----------EEEECSCHHHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH--HHHHhcCCcEE-----------EEEECCCHHHHH
Confidence 8876432 2 33344444555666665 6666764 36788888898 999999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 410 EPSTGL----DPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 410 EPtsgL----D~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
|||+|+ |+..++++++++++++ .|.|+|++|||++++..+||||++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999998 8889999999998863 48999999999999999999999985
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.94 E-value=3.1e-28 Score=231.33 Aligned_cols=147 Identities=11% Similarity=0.064 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP 357 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~ 357 (568)
.++|+||||||||||+|+|+|++. +.++|.+..... ...++++||++|+. ++.+++ .+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~--~~~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI--FSSK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE--EEET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH--HHhh------
Confidence 689999999999999999999985 566776542211 13467899999975 222332 1111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 008362 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAIS-----LIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 358 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~A-----l~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~ 430 (568)
+....+..++++.+||||||||+++|+| ++.+|++++||| ||+++|+..++.+++.+++
T Consensus 63 -------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~- 128 (178)
T 1ye8_A 63 -------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD- 128 (178)
T ss_dssp -------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred -------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence 1111125788899999999999999996 999999999999 9999999999999998865
Q ss_pred cCCceEEEEc---CCHHHHHHhCCEEEEEECCEEEe
Q 008362 431 KQGRAIILTT---HSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 431 ~~g~tiil~t---H~~~e~~~l~dri~il~~G~l~~ 463 (568)
.+.|+|++| |++++++.+||| .+|++..
T Consensus 129 -~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 -PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp -TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred -CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 467788887 599999999998 5567665
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.92 E-value=2.7e-27 Score=243.08 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=143.0
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh--hcceEEEcCCCC-CCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWE 337 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~--r~~ig~~~Q~~~-l~~ 337 (568)
+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ +..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 456789999999999999999999999999999999999999999999986421 122 457999999988 889
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL 415 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgL 415 (568)
.+|++|++.+... ++.. ..+++.+|+. +..++++.+|| |||+++|||++.+|+ +++|| ||+|+
T Consensus 169 ~~~v~e~l~~~~~-~~~d--------~~lldt~gl~--~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD--------VVLCDTSGRL--HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS--------EEEECCCCCS--SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHHH-cCCc--------chHHhcCCCC--cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999999987532 2211 1356678886 36788899999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHHhCCEEEEEECCEE
Q 008362 416 DPASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~~~r~~i~~~l~~~--~~g~tiil~tH---------~~~e~~~l~dri~il~~G~l 461 (568)
|+..+. ++. ..|.|+|++|| .++.+...+++|..+..|+.
T Consensus 234 D~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 998652 333 34899999999 66777788889999999964
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=5.1e-28 Score=260.33 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=159.7
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe---eCCCc--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL---DIRTD-- 318 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~---~i~~~-- 318 (568)
++++++|+++.|+. ...||+++ |++.+||+++|+||||||||||+++|+|+.+|++|.|.++|+ ++..-
T Consensus 130 ~~l~~~~v~~~~~t-----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 46888999999963 25699999 999999999999999999999999999999999999999998 45321
Q ss_pred ----HHHhhcceEEEcCC-CCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH
Q 008362 319 ----MDRIYTSMGVCPQE-DLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL 393 (568)
Q Consensus 319 ----~~~~r~~ig~~~Q~-~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl 393 (568)
....++.++|++|+ ..+++.+|+.+|+.+.+...+... +.+. ...+ .+..||+|| ||+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-----------~~v~----~~ld-~l~~lS~g~-qrv 266 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-----------QHVL----LIMD-SLTRYAMAQ-REI 266 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-----------CEEE----EEEE-CHHHHHHHH-HHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-----------CCHH----HHHH-hHHHHHHHH-HHH
Confidence 23467889999995 556778899999987654321100 0110 1122 267799999 999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----Cc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 394 SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQ-----GR-----AIILTTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 394 ~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~-----g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
++| +++|++ |+||||..+..+.+++.++.+ |+ ||+++|||++ +.+||++++|.+|+++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 999 889988 999999999999999988632 64 9999999999 67899999999999999
Q ss_pred ecCHHHHHHh
Q 008362 464 IGNPKELKAR 473 (568)
Q Consensus 464 ~g~~~~l~~~ 473 (568)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887543
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.91 E-value=1.4e-29 Score=259.36 Aligned_cols=167 Identities=14% Similarity=0.180 Sum_probs=132.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhc
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYT 324 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~ 324 (568)
.|+++||++.|+ +.+|+++||+|++||+++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~-------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF-------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------------- 155 (305)
T ss_dssp HHHHTTCCHHHH-------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------------
T ss_pred eEEEEEEEEEcC-------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------------
Confidence 367889999995 36999999999999999999999999999999999998 89883
Q ss_pred ceEEEcCCCCCCCCCCHHH-HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 325 SMGVCPQEDLLWETLTGRE-HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 325 ~ig~~~Q~~~l~~~lTv~e-~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+|++|++.+|+. |++| |+.+... .+ +.+.+.++.+ |.+ ..+ ..+|||||||| |||++.+|
T Consensus 156 --~~v~q~~~lf~~-ti~~~ni~~~~~---~~-----~~~~~~i~~~-L~~--gld--g~~LSgGqkQR---ARAll~~p 216 (305)
T 2v9p_A 156 --SFANHKSHFWLA-SLADTRAALVDD---AT-----HACWRYFDTY-LRN--ALD--GYPVSIDRKHK---AAVQIKAP 216 (305)
T ss_dssp --CGGGTTSGGGGG-GGTTCSCEEEEE---EC-----HHHHHHHHHT-TTG--GGG--TCCEECCCSSC---CCCEECCC
T ss_pred --EEecCccccccc-cHHHHhhccCcc---cc-----HHHHHHHHHH-hHc--cCC--ccCcCHHHHHH---HHHHhCCC
Confidence 466788877774 7776 7665311 11 1345556654 432 334 78999999999 99999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
+||| |++||+.+++.+.. .||+++.+ ..|||| +|++|++++.|++++++..|
T Consensus 217 ~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 217 PLLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CEEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred CEEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 9999 99999999988862 28998875 579999 99999999999999995443
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.90 E-value=1e-25 Score=235.95 Aligned_cols=173 Identities=14% Similarity=0.110 Sum_probs=142.7
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh--hcceEEEcCCCC-CCCCC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI--YTSMGVCPQEDL-LWETL 339 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~--r~~ig~~~Q~~~-l~~~l 339 (568)
+.+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+ |..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 5688999999999999999999999999999999999999999999985421 122 457999999988 88889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDP 417 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~ 417 (568)
|++|++.+... ++.. ..+++.+|+.+ ..++++.+|| |||++||||++.+|+ +++|| ||+|+|+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~--~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLH--TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSS--CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCCh--hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 99999987532 2211 13566788863 6788899999 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcC---------CHHHHHHhCCEEEEEECCEE
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTH---------SMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH---------~~~e~~~l~dri~il~~G~l 461 (568)
..+. ++. ..|.|+|++|| .+..+...++.|..+..|+.
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 8653 232 34899999999 46677778889999988863
No 77
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=1.9e-26 Score=241.09 Aligned_cols=196 Identities=17% Similarity=0.260 Sum_probs=148.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC------
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT------ 317 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~------ 317 (568)
+++++++++|.|+. ...|++++ |+|.+||++||+||||||||||+++|+|+.+|+.|.+.+.|++...
T Consensus 44 ~~i~~~~l~~~~~t-----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECC-----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCC-----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 46888999999973 25799999 9999999999999999999999999999999999999999976311
Q ss_pred --cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH
Q 008362 318 --DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV 395 (568)
Q Consensus 318 --~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l 395 (568)
.....++.+++++|.+. +..+++...... ..+.+.+...+-. --..-+.+.+||+|| ||+++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~~---------~~~ae~~~~~~~~-vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDR-----PALERMKAAFTA---------TTIAEYFRDQGKN-VLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp TSCHHHHTTEEEEEECTTS-----CHHHHHHHHHHH---------HHHHHHHHTTTCE-EEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhhhhceEEEEECCCC-----CHHHHHHHHHHH---------HHHHHHHHhcccc-HHHHHhhHHHHHHHH-HHHHH
Confidence 11124456888888642 333443321100 0111111111110 000115678999999 99999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCc-----eEEEEcCCHHHHHHhCCEEEEEECCEEEeecCH
Q 008362 396 AISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGR-----AIILTTHSMEEAEALCDRLGIFVDGSLQCIGNP 467 (568)
Q Consensus 396 a~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~-----tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~ 467 (568)
| +++|++ |+|+||..+..++++++++. +|. ||+++||||+ +.+||++.+|.+|+++..+++
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l 250 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTREL 250 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCH
Confidence 9 688887 99999999999999999863 377 9999999999 678999999999999999999
Q ss_pred HHHHH
Q 008362 468 KELKA 472 (568)
Q Consensus 468 ~~l~~ 472 (568)
+++..
T Consensus 251 ~~~~~ 255 (347)
T 2obl_A 251 AEENH 255 (347)
T ss_dssp HTTTC
T ss_pred HHcCC
Confidence 88753
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=2.9e-28 Score=238.76 Aligned_cols=177 Identities=8% Similarity=0.064 Sum_probs=123.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc--HHHhhcceEEEcCCCCCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD--MDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~--~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++.+. ....++.++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99999 8776432 12245789999999876654431
Q ss_pred -HHHHH---HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHH-----HHHHcCCCCEEEEeCCC
Q 008362 342 -REHLL---FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSV-----AISLIGNPKVVYMDEPS 412 (568)
Q Consensus 342 -~e~l~---~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~l-----a~Al~~~p~lllLDEPt 412 (568)
.+++. +....+|.+ ...++++++...+. ..+ .+||||||||+++ |++++.+|++++|||||
T Consensus 86 ~~~~l~~~~~~~~~~g~~----~~~i~~~l~~~~~~---il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~ 155 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTL----KSEYDKAKEQNKIC---LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRL 155 (218)
T ss_dssp TTCEEEEEEETTEEEEEE----HHHHHHHHHTTCEE---EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHH
T ss_pred ccchhhhhhcccccCCCc----HHHHHHHHhCCCcE---EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHH
Confidence 11211 112222222 23466777665431 223 5799999999999 89999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--------CCceEEEEcCCHHHHHHhCCEEE
Q 008362 413 TGLDPASRNNLWNVVKRAK--------QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 413 sgLD~~~r~~i~~~l~~~~--------~g~tiil~tH~~~e~~~l~dri~ 454 (568)
+++|..+...+.+.+.+.. ++...|+++|+++++...+++++
T Consensus 156 ~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 156 LTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9999998888888876542 45677888888888888777664
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.89 E-value=3.8e-23 Score=216.69 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=79.1
Q ss_pred cccCC-CCChhHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHH
Q 008362 379 DKQAG-KYSGGMKRRLSVAISLI---------GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEA 448 (568)
Q Consensus 379 ~~~~~-~LSgG~kqrl~la~Al~---------~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~ 448 (568)
+++++ .||||||||++||++|+ ++|+++||||||++||+..++.+++.+.+.. .|+|++|| +++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc---
Confidence 55677 79999999999999999 9999999999999999999999999998865 79999999 454
Q ss_pred hCCEEEEEECCEEEeecCHHHH
Q 008362 449 LCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 449 l~dri~il~~G~l~~~g~~~~l 470 (568)
.||++++|++|++++.|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999999876
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=4.6e-26 Score=230.37 Aligned_cols=149 Identities=13% Similarity=0.138 Sum_probs=101.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
.+||+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.+||+||++.+++.+||.||+.++....+. +
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---N 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT---T
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH---H
Confidence 4789999999999999999999999999999999987432 2357899999999999999999999887654431 1
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil 438 (568)
..+.+.+.++ . .+.++.+.+||||||||+++|||++. +++||||++||||.. .++++++++..+||+
T Consensus 79 ~~~~i~~~~~----~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~~~vI~ 145 (270)
T 3sop_A 79 CWEPIEKYIN----E--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKVVNIIP 145 (270)
T ss_dssp CSHHHHHHHH----H--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH----H--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhcCcEEE
Confidence 1233444443 1 35678888999999999999999885 999999999999987 334444433388888
Q ss_pred EcCCHHH
Q 008362 439 TTHSMEE 445 (568)
Q Consensus 439 ~tH~~~e 445 (568)
+.|..+.
T Consensus 146 Vi~K~D~ 152 (270)
T 3sop_A 146 VIAKADT 152 (270)
T ss_dssp EETTGGG
T ss_pred EEecccc
Confidence 8887653
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=7e-27 Score=257.77 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=132.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHH--HhCCCCCCceEEEECCeeCCCcHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISM--MIGITRTTSGTAYVQGLDIRTDMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~--l~Gl~~p~~G~i~i~G~~i~~~~~~ 321 (568)
+++.+++.+..+ ..++|+++|+ ++++||+++|+||||||||||+++ ++|+.+|++|.|+++|++......+
T Consensus 12 ~~~~~~~~~~~~------g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~ 85 (525)
T 1tf7_A 12 NSEHQAIAKMRT------MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIK 85 (525)
T ss_dssp --CCSSCCEECC------CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred CccccccccccC------CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHH
Confidence 455566655543 3579999999 999999999999999999999999 7899999999999999885333344
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG 401 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~ 401 (568)
.++.+|+++|++...+ ++.+ ..... .+ +..++++.+++. +..++.+.+||||
T Consensus 86 ~~~~~g~~~q~~~~~~------~l~~-~~~~~--~~----~~~~~l~~~~l~--~~~~~~~~~LS~g------------- 137 (525)
T 1tf7_A 86 NARSFGWDLAKLVDEG------KLFI-LDASP--DP----EGQEVVGGFDLS--ALIERINYAIQKY------------- 137 (525)
T ss_dssp HHGGGTCCHHHHHHTT------SEEE-EECCC--CS----SCCSCCSSHHHH--HHHHHHHHHHHHH-------------
T ss_pred HHHHcCCChHHhhccC------cEEE-EecCc--cc----chhhhhcccCHH--HHHHHHHHHHHHc-------------
Confidence 5678999999754221 1111 00000 00 011223333442 2445556666665
Q ss_pred CCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHH---------HHHhCCEEEEEECC
Q 008362 402 NPKVVYMDEPST-----GLDPASRNNLWNVVKRAK-QGRAIILTTHSMEE---------AEALCDRLGIFVDG 459 (568)
Q Consensus 402 ~p~lllLDEPts-----gLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e---------~~~l~dri~il~~G 459 (568)
+|++++|||||+ ++|+..++.+++++++++ +|+|||++||++++ ++.+||||++|++|
T Consensus 138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588999999998 569999999999999874 59999999999998 46779999999983
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.88 E-value=3.9e-24 Score=218.44 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=129.4
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
..+|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+.+.. ..++++++..+.|... ++..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCCC----hhhc
Confidence 3589999999999999999999999999999999999999888 7766554432 3344445555554432 2233
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHHcCCCCEEEEeCCCC---C---C
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISLIGNPKVVYMDEPST---G---L 415 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~la~Al~~~p~lllLDEPts---g---L 415 (568)
+++... .+ +.++..+.++++++..++ .....+.++|.++ +||+. |+++..+|+++++||||+ + +
T Consensus 96 ~~l~~~-~~---~~~~~~~~~~~~l~~~~l----~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 96 DSLKRE-II---ENGKFDQWFDELFGNDTF----HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-HH---HHTHHHHHHHHHHSSSCE----EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred cccccC-CC---CHHHHHHHHHHHhccCCE----EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 445432 11 223334455555554444 2334456789998 66666 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHh-cC-CceEEEEcCCH--H--------------------HHHHhCCEEEEEECCEE
Q 008362 416 DP-ASRNNLWNVVKRA-KQ-GRAIILTTHSM--E--------------------EAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~-~~r~~i~~~l~~~-~~-g~tiil~tH~~--~--------------------e~~~l~dri~il~~G~l 461 (568)
|+ ...+.+.+.|+++ ++ |+|||++||+. + +++.+||+|++|++|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 65 6678888888885 43 99999999995 5 78899999999999985
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.88 E-value=3.7e-24 Score=250.74 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=126.3
Q ss_pred CeEEEEe-----EEEEcCCCCCCCccceeeeeEEEEeC-------CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008362 244 HAIISDN-----LRKIYPGRDGNPEKVAVNGLSLALPS-------GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 311 (568)
Q Consensus 244 ~~i~~~~-----l~k~y~~~~~~~~~~al~~isl~i~~-------Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~ 311 (568)
.+|+++| |++.|++ ++.+++|++|++++ |++++|+|||||||||++|++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-----~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-----DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C-----CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEecC-----CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4699999 9999942 35799999999987 999999999999999999999 98863
Q ss_pred CeeCCCcHHHhhcceE-EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH
Q 008362 312 GLDIRTDMDRIYTSMG-VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK 390 (568)
Q Consensus 312 G~~i~~~~~~~r~~ig-~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k 390 (568)
+.++| ||||+.. .+|+.|++. ..+|+.+ ...+..+++|++|+
T Consensus 815 -----------~aqiG~~Vpq~~~---~l~v~d~I~---------------------~rig~~d--~~~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 -----------MAQMGCYVPAEVC---RLTPIDRVF---------------------TRLGASD--RIMSGESTFFVELS 857 (1022)
T ss_dssp -----------HHTTTCCEESSEE---EECCCSBEE---------------------EECC-----------CHHHHHHH
T ss_pred -----------HhheeEEeccCcC---CCCHHHHHH---------------------HHcCCHH--HHhhchhhhHHHHH
Confidence 23566 9999863 455555441 1234431 33445577888887
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHh-cC-CceEEEEcCCHHHHHHhCCEEEEEECCEEE--eec
Q 008362 391 RRLSVAISLIGNPKVVYMDEPSTGLDPASR-NNLWNVVKRA-KQ-GRAIILTTHSMEEAEALCDRLGIFVDGSLQ--CIG 465 (568)
Q Consensus 391 qrl~la~Al~~~p~lllLDEPtsgLD~~~r-~~i~~~l~~~-~~-g~tiil~tH~~~e~~~l~dri~il~~G~l~--~~g 465 (568)
+ +++|++++.+|+++|||||++|+|+... ..+|++++.+ ++ |.++|++||++++++.+||++.++ +|++. ..|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 6 9999999999999999999999999985 5579999886 44 899999999999999999999887 58888 456
Q ss_pred CHHH
Q 008362 466 NPKE 469 (568)
Q Consensus 466 ~~~~ 469 (568)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5544
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=2.3e-26 Score=237.15 Aligned_cols=182 Identities=13% Similarity=0.105 Sum_probs=138.0
Q ss_pred CCeEEEEeEEEEcCCCCCCCccceeeeeEEE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 243 SHAIISDNLRKIYPGRDGNPEKVAVNGLSLA-----------------------LPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 243 ~~~i~~~~l~k~y~~~~~~~~~~al~~isl~-----------------------i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...|+++||+|.|+ ++++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~--------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL--------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh--------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 44699999999994 366666654 89999999999999999999999999
Q ss_pred CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 008362 300 ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379 (568)
Q Consensus 300 l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 379 (568)
+++|+.|. +++++++|++.+++. |++||+.+.. .+|.+.....+.+.+.++.++ . +..+
T Consensus 113 ll~~~~G~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~--~~~~ 171 (312)
T 3aez_A 113 LLARWDHH----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVK-S--GSDY 171 (312)
T ss_dssp HHHTSTTC----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHH-T--TCSC
T ss_pred hccccCCC----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhC-C--Cccc
Confidence 99998663 468999999999988 9999986532 235444444567788888887 3 2456
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH-HHhCCEEEEEEC
Q 008362 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVD 458 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~-~~l~dri~il~~ 458 (568)
.++.+|||||+||+++|+|++.+|++||||||++.+|+.. .. +.+. -+.+ |+++|+.+.+ +++++|...+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~----l~~~-~D~~-I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LM----VSDL-FDFS-LYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CC----GGGG-CSEE-EEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-HH----HHHh-cCcE-EEEECCHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999998621 11 1111 1344 5566676653 445666555555
Q ss_pred CE
Q 008362 459 GS 460 (568)
Q Consensus 459 G~ 460 (568)
|+
T Consensus 245 ~~ 246 (312)
T 3aez_A 245 TA 246 (312)
T ss_dssp TG
T ss_pred cc
Confidence 44
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.88 E-value=9.3e-25 Score=227.02 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=111.1
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.+++++|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC--------------
Confidence 7999999999999999999999999999999999999999999999965211 1112344555430
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
|||+||++||+||..+|++++|||||+ .++++
T Consensus 225 -----------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~ 256 (330)
T 2pt7_A 225 -----------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYD 256 (330)
T ss_dssp -----------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHH
T ss_pred -----------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHH
Confidence 899999999999999999999999998 24677
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHHhCCEEEEEECCEE
Q 008362 426 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGSL 461 (568)
Q Consensus 426 ~l~~~~~g-~tiil~tH~~~e~~~l~dri~il~~G~l 461 (568)
.++.+..| .|+|+|||+++ +...|||+++|.+|+.
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 77776665 48999999998 7778999999988864
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.88 E-value=4.1e-24 Score=212.68 Aligned_cols=176 Identities=14% Similarity=0.163 Sum_probs=119.3
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+|+|+||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCHh
Confidence 467999999999999999999999999999999999976 544433 3467899999985 77889999
Q ss_pred HHHHHHhhhcCCCch--hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 008362 343 EHLLFYGRLKNLKGP--ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASR 420 (568)
Q Consensus 343 e~l~~~~~l~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r 420 (568)
|++.+.....+.... ...+.+.+.++.+ . ...++++.+||+||+||+++ ++++.+|+++|+|||....|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~--~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--V--EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--H--TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--H--CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 999876544333221 1233445555543 2 24678889999999999988 6889999999999998888764
Q ss_pred HHHHHHHHHhcCCceEEEEcCCHHHH-HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 421 NNLWNVVKRAKQGRAIILTTHSMEEA-EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 421 ~~i~~~l~~~~~g~tiil~tH~~~e~-~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
++ +. .+.+|+++||+...+ ..+++++ ++|+ +.+++.+++
T Consensus 150 --l~----~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 --IR----DM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp --HH----TT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHH
T ss_pred --HH----Hh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 22 11 388999999974444 4555545 6675 677776654
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.87 E-value=2.3e-22 Score=221.32 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=74.0
Q ss_pred ccCCCC-ChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEE
Q 008362 380 KQAGKY-SGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIF 456 (568)
Q Consensus 380 ~~~~~L-SgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il 456 (568)
+++.+| |||||||++||+|++.+| +++||||||+|||+.++..+.++|+++.+|+|||++||+++.+. .|||+++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 99999999999999999999999998766999999999999886 59999999
Q ss_pred ECCE
Q 008362 457 VDGS 460 (568)
Q Consensus 457 ~~G~ 460 (568)
++|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 7764
No 88
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=9.9e-23 Score=235.15 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=128.3
Q ss_pred HHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc----------hhHH
Q 008362 291 TTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG----------PALT 360 (568)
Q Consensus 291 TTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~----------~~~~ 360 (568)
+|...|..+.++|.+|+|.++|+++.. +..+|+.|++.+...+. .+. ++.
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~------------------~~~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~- 441 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHE------------------FTELSISEELEFLKNLN-LTEREREIVGELLKEI- 441 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHH------------------HHHSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHH-
T ss_pred ccchhcccccCChHhcCcEECCccHHH------------------hhhCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHH-
Confidence 445567778899999999999998732 22245555555533221 110 111
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEE
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAII 437 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tii 437 (568)
++..+.|+.+||.. ...++++.+|||||||||+||+||+.+|+ ++||||||+||||..++.++++|++++ +|.|||
T Consensus 442 ~~~~~~L~~vgL~~-l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tvi 520 (916)
T 3pih_A 442 EKRLEFLVDVGLEY-LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVI 520 (916)
T ss_dssp HHHHHHHHTTTCTT-CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHHHHHcCCcc-ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 23456788899963 23689999999999999999999999887 999999999999999999999999975 599999
Q ss_pred EEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 438 LTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 438 l~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
++|||++++.. ||||++| ++|++++.|+++++.+
T Consensus 521 vVtHd~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 521 VVEHDEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EECCCHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEeCCHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99999999876 9999999 8999999999999864
No 89
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.87 E-value=9.6e-22 Score=205.05 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=71.6
Q ss_pred ccccCCCCChhHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhC
Q 008362 378 ADKQAGKYSGGMKR------RLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 378 ~~~~~~~LSgG~kq------rl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~ 450 (568)
.++++.+||||||| |+++|+|++.+|+++||||||+||||..++.+++.|+++ ++|+|||++||+. ++...|
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~-~~~~~~ 320 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 320 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH-HHHHhC
Confidence 46789999999999 678889999999999999999999999999999999985 4688999999995 567789
Q ss_pred CEEEEEE
Q 008362 451 DRLGIFV 457 (568)
Q Consensus 451 dri~il~ 457 (568)
||+++|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999886
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.87 E-value=8.5e-24 Score=209.14 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=111.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh--CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMI--GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~--Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
.|++||+++|+||||||||||+++|+ |+.++.+|.+++.+.+......+.++.+|+.+|+....+.+++.++......
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 79999999999999999999999999 7757778888888866543333445678888887555555555554322110
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC-----HHHHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD-----PASRNNLWN 425 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD-----~~~r~~i~~ 425 (568)
.. .... .......+.++.++...+..-..+|+++++||||+++| +..++.+++
T Consensus 106 ~~-------~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~ 163 (251)
T 2ehv_A 106 LP-------SEEK---------------FVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLK 163 (251)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH
T ss_pred cc-------cccc---------------eeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH
Confidence 00 0000 01111223444444444444568999999999999998 777777999
Q ss_pred HHHHhc-CCceEEEEcCCHHHH---------HHhC-CEEEEEEC
Q 008362 426 VVKRAK-QGRAIILTTHSMEEA---------EALC-DRLGIFVD 458 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~~e~---------~~l~-dri~il~~ 458 (568)
+++.++ +|+|||++||+++++ +.+| |++++|++
T Consensus 164 l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 164 LNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 998864 599999999999998 6888 99999974
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.85 E-value=6.1e-22 Score=218.33 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=121.7
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
+..+++|++++|.||||||||||+++++|..+|+ |+ +.+.+.+|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----------------~vi~~~~ee~~----~~l~~~~----~ 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----------------RAILFAYEESR----AQLLRNA----Y 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----------------CEEEEESSSCH----HHHHHHH----H
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----------------CEEEEEEeCCH----HHHHHHH----H
Confidence 3499999999999999999999999999998875 43 11345555531 0122221 1
Q ss_pred hcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA-----SRNNLWN 425 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~-----~r~~i~~ 425 (568)
..+.+ +++ +...|+. ...+..+.+|||||+||+.+|+++..+|+++++| ||+|||+. .++.+++
T Consensus 330 ~~g~~-------~~~-~~~~g~~--~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLL--KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp TTSCC-------HHH-HHHTTSE--EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCE--EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 11222 112 2245554 3678889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHhc-CCceEEEEcCCH----------HHHHHhCCEEEEEECCE
Q 008362 426 VVKRAK-QGRAIILTTHSM----------EEAEALCDRLGIFVDGS 460 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~----------~e~~~l~dri~il~~G~ 460 (568)
+++.++ +|.|||++||++ ++++.+||+|++|++|+
T Consensus 399 ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 998864 699999999999 88889999999999987
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.84 E-value=3.1e-22 Score=231.95 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=120.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHH--------hCCCCCCceEEEECCeeCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMM--------IGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l--------~Gl~~p~~G~i~i~G~~i~ 316 (568)
.+.+++.+.-+-... .+.+.+++|++|++++|++++|+|||||||||++|++ .|...|.++..
T Consensus 631 ~i~i~~~rHP~le~~-~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQ-DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC---CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred ceEeecCccchhhhc-CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 466666554332111 1135789999999999999999999999999999999 55544433211
Q ss_pred CcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHH
Q 008362 317 TDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVA 396 (568)
Q Consensus 317 ~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la 396 (568)
++.+ ++++..+|+. +.....+|+|++++..+|
T Consensus 702 ---------~~~~----------------------------------d~i~~~ig~~-----d~l~~~lStf~~e~~~~a 733 (934)
T 3thx_A 702 ---------VSIV----------------------------------DCILARVGAG-----DSQLKGVSTFMAEMLETA 733 (934)
T ss_dssp ---------EECC----------------------------------SEEEEECC--------------CHHHHHHHHHH
T ss_pred ---------chHH----------------------------------HHHHHhcCch-----hhHHHhHhhhHHHHHHHH
Confidence 1100 0122334432 234456888888888888
Q ss_pred HHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHH
Q 008362 397 ISL--IGNPKVVYMDEPSTGLDPASRNNL-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 397 ~Al--~~~p~lllLDEPtsgLD~~~r~~i-~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l 470 (568)
+++ +.+|+++||||||+|+||..+..+ |.+++.+ + .|+++|++||+++.+ .+||++..+.+|++.+.++.+++
T Consensus 734 ~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 734 SILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 888 999999999999999999999888 7777775 3 489999999997655 68999999999999998887654
No 93
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=1.5e-20 Score=215.81 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CE
Q 008362 338 TLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KV 405 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~----------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~l 405 (568)
.+||.|++.|+..+. ++. +++.+++ +.|+.+||.. -..++++.+||||||||++||++|..+| ++
T Consensus 451 ~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~-l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 451 AMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNVGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp TSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTT-SBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCc-cccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 589999999976663 444 2344555 4589999963 2369999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 406 VYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 406 llLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+||||||+||||..++.++++|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999975 5999999999999986 69999999 7999999999988743
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=1.7e-20 Score=214.80 Aligned_cols=180 Identities=24% Similarity=0.294 Sum_probs=132.9
Q ss_pred CCCCcHHHHHHHHhCC---------CCCCceEEEECCeeCCC----cHHHhhcceEEEcCCCCCCC----CCCHHHHHHH
Q 008362 285 PNGAGKTTFISMMIGI---------TRTTSGTAYVQGLDIRT----DMDRIYTSMGVCPQEDLLWE----TLTGREHLLF 347 (568)
Q Consensus 285 ~NGaGKTTll~~l~Gl---------~~p~~G~i~i~G~~i~~----~~~~~r~~ig~~~Q~~~l~~----~lTv~e~l~~ 347 (568)
.+..||+|+.+.+... +.|.+|+|.++|+++.. ...+....++-+||...... .++. ++...
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 348 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIA 348 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHH
Confidence 4667999999988874 45678999999998743 12222222222333211000 0111 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~lllLDEPtsgLD~~~r~~i~~ 425 (568)
...+ .+++.++++ .++.+||.+ -..++++.+|||||||||.||+||..+| +++||||||+||||..++.+++
T Consensus 349 ~~~i----~~ei~~rl~-~L~~vGL~~-l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~ 422 (842)
T 2vf7_A 349 LQRM----AADLVKRLD-VLLHLGLGY-LGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLS 422 (842)
T ss_dssp HHHH----HHHHHHHHH-HHHHTTCTT-SBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHH----HHHHHHHHH-HHHhCCCCc-CCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHH
Confidence 1111 245566676 688999963 2369999999999999999999999999 5999999999999999999999
Q ss_pred HHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 426 VVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 426 ~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 423 ~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 423 ALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 999975 5999999999999876 69999999 7999999999987643
No 95
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.82 E-value=1.5e-22 Score=207.80 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=88.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCCCceEEEECCeeCCCcHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI-TRTTSGTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p~~G~i~i~G~~i~~~~~~~r~~ig 327 (568)
+||+|.|++ +.++++++|+| +|+||||||||||+++|.|. ..|++| +.++|.++.... . ++.++
T Consensus 2 ~~l~~~~~~------~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEAST 66 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CE
T ss_pred CCCcceECC------EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEE
Confidence 588999973 67999999999 99999999999999999998 889999 888888764322 1 35689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEE
Q 008362 328 VCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 407 (568)
Q Consensus 328 ~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lll 407 (568)
+++|.+.+...+|+.|+..+...... .+..+..++. ++ +..+++++++|||||||+.+|||++ +++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~-l~-------~~~~~~~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISY-ID-------EQFERYLHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EEEC---CCEEEEEEEEC-------------CTTHHHH-HH-------HHHHHHHHHHTSSCCTTCCCCCCCE----EEE
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHH-HH-------HHHHHHHHHhCHHhhhhhhhhhhhh----eee
Confidence 99999888888999998876433210 0110111111 11 1356788899999999999998886 999
Q ss_pred EeCCCC-CCCHHHHHHHHHHHHHhc--CCceEEEEcCCHH
Q 008362 408 MDEPST-GLDPASRNNLWNVVKRAK--QGRAIILTTHSME 444 (568)
Q Consensus 408 LDEPts-gLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~ 444 (568)
+||||+ |||+..+ ++++++. .+.++|+++||+.
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999998 5999874 4555543 3789999999985
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.82 E-value=9.6e-22 Score=197.72 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=102.3
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~-----------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-----------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC-----------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce-----------eecCCccee-------
Confidence 3899999 9999999999999999999999999999998 999999997653 333322100
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
. .. +.+++.. .+| |++||+||..+|+++++|||| |+.+.+.+
T Consensus 75 -------v---~q-----------~~~gl~~--------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 75 -------V---NQ-----------REVGEDT--------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -------E---EE-----------EEBTTTB--------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -------e---eH-----------HHhCCCH--------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 0 00 0344421 122 899999999999999999999 99886544
Q ss_pred HHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEEC
Q 008362 424 WNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVD 458 (568)
Q Consensus 424 ~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~ 458 (568)
++....|.+|+++||+.+ +...|||++.|..
T Consensus 117 ---l~~~~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 ---LRAAETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred ---HHHHccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 444457999999999987 6678999988754
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.81 E-value=5.8e-20 Score=168.99 Aligned_cols=83 Identities=28% Similarity=0.407 Sum_probs=75.0
Q ss_pred ccccCCCCChhHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHHHHHHhC
Q 008362 378 ADKQAGKYSGGMKRRLSVA------ISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 378 ~~~~~~~LSgG~kqrl~la------~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~e~~~l~ 450 (568)
.++++++||||||||++|| +|++++|++++|||||+|||+.+++.+++.+++. ++|+|||++||++ ++..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence 5788999999999999886 8999999999999999999999999999999986 4589999999999 567899
Q ss_pred CEEEEE--ECCEE
Q 008362 451 DRLGIF--VDGSL 461 (568)
Q Consensus 451 dri~il--~~G~l 461 (568)
|++++| .+|.-
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 98
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.81 E-value=4.3e-20 Score=212.80 Aligned_cols=133 Identities=23% Similarity=0.263 Sum_probs=112.9
Q ss_pred CCCCCHHHHHHHHhhhcCCCc----------hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC--C
Q 008362 336 WETLTGREHLLFYGRLKNLKG----------PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN--P 403 (568)
Q Consensus 336 ~~~lTv~e~l~~~~~l~~~~~----------~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~--p 403 (568)
+..+||.|.+.|+..+ +++. +++.+++ +.|+.+||.. -..++.+.+||||||||++||+||..+ |
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~-l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEY-LSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGG-SCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCc-cccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 3458999999986554 3444 3344555 3578899952 126999999999999999999999999 5
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEEEE------ECCEEEeecCHHHHHH
Q 008362 404 KVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLGIF------VDGSLQCIGNPKELKA 472 (568)
Q Consensus 404 ~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~il------~~G~l~~~g~~~~l~~ 472 (568)
+++||||||+||||..++.++++|++++ .|.|||+++|+++++. .||||++| ++|++++.|+++++.+
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 9999999999999999999999999975 6999999999999986 69999999 7999999999998865
No 99
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.81 E-value=3.7e-19 Score=191.31 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHHHhCCEEE
Q 008362 380 KQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~~l~dri~ 454 (568)
+++..||||||||++||++|+ ++|+++||||||++||+..++.+.+.|++.. ++.++|++||+.+.. ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 7899999999999999999999999999874 589999999997654 5799999
Q ss_pred EEE
Q 008362 455 IFV 457 (568)
Q Consensus 455 il~ 457 (568)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 100
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.80 E-value=6.9e-21 Score=217.00 Aligned_cols=146 Identities=21% Similarity=0.212 Sum_probs=112.9
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+++|+||+ |++++|+|||||||||++|+|+|+.. |+.|.+. . ..+..+|+++| +++.+++.
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEECCCSE---EEEECCC-
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccceeeHHH---hhccCCHH
Confidence 5799999999 99999999999999999999999874 6777642 1 12346888877 55666666
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH--cCCCCEEEEeCC---CCCCCH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL--IGNPKVVYMDEP---STGLDP 417 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al--~~~p~lllLDEP---tsgLD~ 417 (568)
||+.. .+|+||++++.+|+++ +.+|+++||||| |+++|+
T Consensus 630 d~l~~------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 630 DDLAG------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHHHh------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 65431 2588999999999999 999999999999 999999
Q ss_pred HHH-HHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 418 ASR-NNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 ~~r-~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
.++ ..+.+.+.+ .|.++|++||+++.++ +| .-.+.++++.+...
T Consensus 674 ~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~-~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 674 VAIATAVAEALHE--RRAYTLFATHYFELTA-LG--LPRLKNLHVAAREE 718 (765)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEECCCHHHHT-CC--CTTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHh--CCCEEEEEeCCHHHHH-hh--hhcceEEEEEEEEc
Confidence 886 468887766 5899999999998865 56 33355666666543
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.80 E-value=2.1e-21 Score=189.47 Aligned_cols=148 Identities=10% Similarity=0.079 Sum_probs=96.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-------CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRT-------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
.+++||+++|+||||||||||+++|+|+..| ..|.+++++.+... ++++++++|...+++. |+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 7899999999999999999999999996555 44577877765311 1234555565554443 555554
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH-HHHHHHHHHH-------cCCCCEEEEeCCCCCCCH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM-KRRLSVAISL-------IGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~-kqrl~la~Al-------~~~p~lllLDEPtsgLD~ 417 (568)
.+... .++++ ++.+..++++ ..+|+++++||||+++|+
T Consensus 95 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 95 YVARA----------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp EEEEC----------------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred EEEec----------------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 43211 11111 1122223322 358999999999999998
Q ss_pred H-------HH-----HHHHHHHHHh-c-CCceEEEEcCCHHH----HHHhCCEEEEEECCE
Q 008362 418 A-------SR-----NNLWNVVKRA-K-QGRAIILTTHSMEE----AEALCDRLGIFVDGS 460 (568)
Q Consensus 418 ~-------~r-----~~i~~~l~~~-~-~g~tiil~tH~~~e----~~~l~dri~il~~G~ 460 (568)
. .+ +++++.+.+. + .|.|||++||.+++ ++.+||++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 22 3566666654 3 49999999996665 999999999998753
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.80 E-value=6.6e-21 Score=220.30 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=105.9
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
++.+++|+||++++|++++|+|||||||||+||+++++.... +.-+++|+...-.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-------------------q~g~~vpa~~~~i~~---- 715 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-------------------QIGSYVPAEEATIGI---- 715 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------HHTCCBSSSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------hcCccccchhhhhhH----
Confidence 357999999999999999999999999999999997642110 001122322110000
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
+++++..+++. +...+..+++|+||+|++.++++ +.+|+++||||||+|+||..+..
T Consensus 716 --------------------~d~i~~~ig~~--d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 716 --------------------VDGIFTRMGAA--DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp --------------------CSEEEEEC------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred --------------------HHHHHHhCChH--HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 01122334443 24556678899999999999999 89999999999999999999988
Q ss_pred HH-HHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEE-EECCEEEe
Q 008362 423 LW-NVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI-FVDGSLQC 463 (568)
Q Consensus 423 i~-~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~i-l~~G~l~~ 463 (568)
+. .+++.+ + .|.++|++||+++.+ .+||+..- +.++++.+
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhcccceEEEEEEE
Confidence 86 677765 3 599999999998776 46776532 45566555
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.79 E-value=5.8e-22 Score=221.80 Aligned_cols=190 Identities=15% Similarity=0.244 Sum_probs=123.4
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeee----------EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCe
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGL----------SLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGL 313 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~i----------sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~ 313 (568)
.+.++||++.|+.. .++.++.+ +++++. +||+||||||||||+++|+|+..| ++|+|+++|.
T Consensus 10 ~i~~~~l~~~~~~~----~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEK----VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHH----HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHH----HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 47889999999631 12344433 366654 999999999999999999999988 8999999999
Q ss_pred eCCC----cHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 314 DIRT----DMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 314 ~i~~----~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
++.. ....+++.+||+||+..+++.+||+||+.+.....+... -++.
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~s---------------- 133 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGIS---------------- 133 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCCC----------------
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------cccc----------------
Confidence 8631 123567889999999999999999999987543211100 1111
Q ss_pred HHHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHh-c--CCceEEEEcCCHHH--------HHHh---
Q 008362 390 KRRLSVAISLIGNPKVVYMDEP------STGLDPASRNNLWNVVKRA-K--QGRAIILTTHSMEE--------AEAL--- 449 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEP------tsgLD~~~r~~i~~~l~~~-~--~g~tiil~tH~~~e--------~~~l--- 449 (568)
++++.++++....|+++++||| |+|||+..++.++++++++ + .+.+++++||+++. +..+
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 1122333344568999999999 9999999999999999984 3 36789999999762 2332
Q ss_pred -CCEEEEEECCEEEeecCHHHH
Q 008362 450 -CDRLGIFVDGSLQCIGNPKEL 470 (568)
Q Consensus 450 -~dri~il~~G~l~~~g~~~~l 470 (568)
+..|+|+.++.++..|+.+++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCC
T ss_pred CCceEEEecchhhcCcccHHHH
Confidence 356899999998888876543
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.78 E-value=2.5e-22 Score=194.44 Aligned_cols=145 Identities=14% Similarity=0.099 Sum_probs=118.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC--CCCCHHHHHHHHhhh
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW--ETLTGREHLLFYGRL 351 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~--~~lTv~e~l~~~~~l 351 (568)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|++++..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999998865 489999998876 5689999876532
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHH----HHHHHHHHHcCCCCEEEEeCCCCC-------CCHHHH
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMK----RRLSVAISLIGNPKVVYMDEPSTG-------LDPASR 420 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~k----qrl~la~Al~~~p~lllLDEPtsg-------LD~~~r 420 (568)
+.+.....+++.+.++.+++.+ ..++++.++|+||+ ||+++|++++.+|+++++||||++ ||+..+
T Consensus 60 -~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 60 -DHPDAFDLALYLEHAQALLRGL--PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp -TSGGGBCHHHHHHHHHHHHTTC--CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred -CChhhhhHHHHHHHHHHHHcCC--CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 2222223456777888888863 56778999999974 688999999999999999999999 999999
Q ss_pred HHHHHHHHHh--cCCceEEEEcCCHH
Q 008362 421 NNLWNVVKRA--KQGRAIILTTHSME 444 (568)
Q Consensus 421 ~~i~~~l~~~--~~g~tiil~tH~~~ 444 (568)
..+++.+++. .+|+|++.++|++.
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999998764 46999999999854
No 105
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.77 E-value=4.7e-21 Score=187.75 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=107.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCH----HHHH
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTG----REHL 345 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv----~e~l 345 (568)
-..++|++++|+||||||||||+++|+|+.+| .+|.|.+.|.+... ..++.++|+||++.+|+.+++ .||+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 46789999999999999999999999999986 78999998876542 235679999998776666666 4444
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
.+++..+|.+. +.+++ ++..++++||| ||+.+++.+++
T Consensus 88 ~~~~~~yg~~~----~~v~~---------------------------------~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 88 EVFGNYYGTSR----EAIEQ---------------------------------VLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp EETTEEEEEEH----HHHHH---------------------------------HHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred HHHhccCCCCH----HHHHH---------------------------------HHhcCCeEEEE-----ECHHHHHHHHH
Confidence 43333332211 12222 23336999999 99999999999
Q ss_pred HHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 426 VVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 426 ~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+. +++||+++||+++++++ |+ +.+| .++++++.+++
T Consensus 126 ~l~---~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 126 KMP---HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HCT---TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred Hcc---CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 875 68999999999999876 43 6777 68888887764
No 106
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.77 E-value=1.3e-21 Score=187.49 Aligned_cols=159 Identities=18% Similarity=0.123 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
|++++|+||||||||||+++|+|+++ ++| |.++|+++.. ....++++||++|+. ... ++++ +++.. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-VRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-EP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-EETTSSEEEEEEEET--TSC---EEEE---EECCC-CC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-hHhhhceEEEEEEec--ccc---eehh---hcccc-cC
Confidence 78999999999999999999999999 999 9999988743 334678899999975 111 1111 11110 00
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHh
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVAI---SLIGNPKVVYMDE--PSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~la~---Al~~~p~lllLDE--PtsgLD~~~r~~i~~~l~~~ 430 (568)
. ...- .....++...+|+|||+++ ++++ |+..+|+++|+|| |+..+|+...+.+.+++..
T Consensus 69 ~-----------~~~~--~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 69 P-----------PGKR--ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp C-----------SSSC--CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred C-----------cccc--ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 0 0000 0123555667999999888 4454 6899999999999 8999999887777777653
Q ss_pred cCCceEEE----EcCCHHHHHHhCCEEEEEECCEEEeec
Q 008362 431 KQGRAIIL----TTHSMEEAEALCDRLGIFVDGSLQCIG 465 (568)
Q Consensus 431 ~~g~tiil----~tH~~~e~~~l~dri~il~~G~l~~~g 465 (568)
..++|+ +||+.+ ..++|||..+.+|++....
T Consensus 135 --~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 --PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp --SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred --CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 344553 349863 2344455455778877643
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=1.1e-20 Score=193.88 Aligned_cols=149 Identities=16% Similarity=0.103 Sum_probs=109.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-----HHHh--hcceEEEcCCCCCCCCCCHHHHHHHH
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-----MDRI--YTSMGVCPQEDLLWETLTGREHLLFY 348 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-----~~~~--r~~ig~~~Q~~~l~~~lTv~e~l~~~ 348 (568)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.|+... ...+ +..+++++|++.++|.+|++|++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998542 1122 45799999999999989999999864
Q ss_pred hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 349 GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 349 ~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
. .++.. ..+++..|+.+ ..++.+ +...|||+++|||++.+|+.++| +||+.+++.+.+.++
T Consensus 181 ~-~~~~d--------~~llDt~G~~~--~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~ 241 (304)
T 1rj9_A 181 K-ARGYD--------LLFVDTAGRLH--TKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAK 241 (304)
T ss_dssp H-HHTCS--------EEEECCCCCCT--TCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHH
T ss_pred H-hCCCC--------EEEecCCCCCC--chHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHH
Confidence 2 12110 01233445432 233334 44458999999999999994444 455555556666666
Q ss_pred Hhc--CCceEEEEcCCH
Q 008362 429 RAK--QGRAIILTTHSM 443 (568)
Q Consensus 429 ~~~--~g~tiil~tH~~ 443 (568)
+.. .|.|+|++||+.
T Consensus 242 ~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 242 KFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHCCSEEEEECTT
T ss_pred HHHHHcCCcEEEEECCc
Confidence 642 389999999984
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.76 E-value=6.8e-20 Score=209.92 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=110.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
+.+++|+||+ ++|++++|+|||||||||++|+|+|+..+ ..| ..+.. .+..+|+++| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCHH
Confidence 5699999999 99999999999999999999999997432 222 11211 1234666655 45555555
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
|++.. ..+++|+||++ ++.+...+.+|+++|||||++|+|+..+..
T Consensus 661 d~l~~---------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 661 DDLAS---------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp ------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred HHHHh---------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 55421 11245777764 455556799999999999999999988877
Q ss_pred H-HHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 423 L-WNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 423 i-~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
+ +++++.+ + .|.++|++||+++.++ +||++..+.+|++.+...
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEEc
Confidence 5 8888875 4 4899999999998764 899988889999877643
No 109
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.76 E-value=3.2e-19 Score=173.83 Aligned_cols=169 Identities=16% Similarity=0.065 Sum_probs=118.7
Q ss_pred cceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCCCCCCCCH
Q 008362 264 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDLLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~l~~~lTv 341 (568)
..+|+++.. .+++|++++|+||||||||||++.|++...+++|.+.+.+.+.... .......+|+.+|..... .+.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~- 86 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI- 86 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE-
Confidence 568999988 8999999999999999999999999998888888888876554321 111112344444321100 000
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC--EEEEeCCCCCC--CH
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK--VVYMDEPSTGL--DP 417 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~--lllLDEPtsgL--D~ 417 (568)
.+.... ...+ . .+.. ...|.+++++...+.+...+|+ ++++||||+++ |+
T Consensus 87 --------~~~~~~------------~~~~-~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 87 --------IIDALM------------KEKE-D--QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp --------EEECCC-----------------C--TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred --------EEeccc------------cccC-c--eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 000000 0000 1 0111 2349999998888888888999 99999999888 99
Q ss_pred HHHHHHHHHHHHh-c-CCceEEEEcCCH--------HHHHHhCCEEEEEECCE
Q 008362 418 ASRNNLWNVVKRA-K-QGRAIILTTHSM--------EEAEALCDRLGIFVDGS 460 (568)
Q Consensus 418 ~~r~~i~~~l~~~-~-~g~tiil~tH~~--------~e~~~l~dri~il~~G~ 460 (568)
..++++++.|+++ + .|.|||++||++ ..++.+||++++|++.+
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9999999999875 3 599999999999 55899999999998764
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-20 Score=181.94 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=100.9
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC-----CCCceEEEECCeeCCCcH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT-----RTTSGTAYVQGLDIRTDM 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~-----~p~~G~i~i~G~~i~~~~ 319 (568)
+++++|++|.|+ ..++++ |.+++|+.++|+|+||||||||++.|+|.. .|+.|++...+.-.....
T Consensus 3 ~l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 478999999995 247888 899999999999999999999999999998 888898765331100000
Q ss_pred HHhhcceEEEcCCCCCCCCCC---HHHHHHHHhh----hcC--------CCchhHHHHHHHHHHHcCCCCCCcccccCCC
Q 008362 320 DRIYTSMGVCPQEDLLWETLT---GREHLLFYGR----LKN--------LKGPALTQAVEESLKSVNLFHGGVADKQAGK 384 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lT---v~e~l~~~~~----l~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~ 384 (568)
..+...-|+..+. .+.-. .+..+..+.+ ..+ .......+++.++++..++.. -....++..
T Consensus 74 ~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~nK~D~ 149 (210)
T 1pui_A 74 KRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAV-LVLLTKADK 149 (210)
T ss_dssp EEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred EEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEecccC
Confidence 0000000110000 00000 1111222111 000 011122345566677777752 123677889
Q ss_pred CChhHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCce
Q 008362 385 YSGGMKRR-LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRA 435 (568)
Q Consensus 385 LSgG~kqr-l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~t 435 (568)
+|+||||| +..+++++.+|+.+++|||||++|+..++++++.|.+. .++.+
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 99999999 89999999999999999999999999999999999874 44543
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.74 E-value=9.6e-23 Score=194.07 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
|++++|+|||||||||++++|++ |.+|.+.++|.++.. ....|+++|.....+.+++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINH-----MVVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHT-----TCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhh-----hhccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999997 778999999866532 1246778886655555688888876543221000
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCC--ChhHHHHHHHHH------HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKY--SGGMKRRLSVAI------SLIGNPKVVYMDEPSTGLDPASRNNLWNVVK 428 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~L--SgG~kqrl~la~------Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~ 428 (568)
. ..+++.+.. ....+...++ |+||+|++.++. +++.+|+...+|| |+|+..++. |+.+.
T Consensus 74 ~------~~ild~~~~---~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 74 N------DVVLDYIAF---PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp C------EEEEESCCC---HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred C------cEEEeeccC---HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 0 001111110 0111222334 889998988888 8888998888884 899999999 99988
Q ss_pred Hhc-CCceEEEEcCC-HHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 429 RAK-QGRAIILTTHS-MEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 429 ~~~-~g~tiil~tH~-~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
... .+.++|.+||. +++++++||+|+ ++|++++.|+++-+..
T Consensus 141 ~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 141 SKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--------
T ss_pred hcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchhh
Confidence 764 57899999999 999999999998 9999999999877643
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=6.7e-20 Score=195.66 Aligned_cols=165 Identities=20% Similarity=0.185 Sum_probs=101.4
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhh
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIY 323 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r 323 (568)
.+|.++||++.|++ +.+++|+||+| +|+|+||||||||+++|+|...|+.|. +|.++.......+
T Consensus 10 ~~l~~~~l~~~y~~------~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~ 74 (418)
T 2qag_C 10 GYVGFANLPNQVYR------KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQV 74 (418)
T ss_dssp -----CCCCCCTTT------TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEE
T ss_pred CcEEEEecceeECC------EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceee
Confidence 36899999999973 57999999998 999999999999999999998876652 3333221111123
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 008362 324 TSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP 403 (568)
Q Consensus 324 ~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p 403 (568)
+.+++++|++.+++.+|+.|++.+...... .+..+.+.+.++ ..++.+++||++||||++.+|
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EEEECC------CEEEEEEECC--------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCC
Confidence 568999999988888999999887543221 111111222221 134557788999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 404 K---VVYMDEPS-TGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 404 ~---lllLDEPt-sgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
+ ++++|||| .|||+... ++++++..+.+||++.|..|
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTT
T ss_pred CeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEccc
Confidence 9 99999999 69999874 34445555778888877665
No 113
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.73 E-value=7.7e-20 Score=191.39 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=106.1
Q ss_pred ceeeee-EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 265 VAVNGL-SLALPSGECFGMLGPNGAGKTTFISMMIGIT--RTTS----GT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 265 ~al~~i-sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~--~p~~----G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
..||++ ++.+++|++++|+||||||||||++.++|.. +|++ |+ |++++++.. .++++++++|...++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTCC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCCC
Confidence 467776 6899999999999999999999999999988 7777 67 899987642 134567778876655
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-------CCCCEEEEe
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-------GNPKVVYMD 409 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-------~~p~lllLD 409 (568)
+. ++.||+.+... . -|.+++|++.++++++ .+|+++++|
T Consensus 193 ~~-~v~~ni~~~~~---~------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 193 PD-EVLKHIYVARA---F------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp HH-HHGGGEEEEEC---C------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred HH-HHhhCEEEEec---C------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 44 55555433210 0 0334455555555555 799999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecC
Q 008362 410 EPSTGLDPAS------------RNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 410 EPtsgLD~~~------------r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~ 466 (568)
|||+++|+.. .++++..|+++ + .|+|||+++|.....+..++.......|++.+.++
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 9999999962 34555556553 3 58999999999887765555555666777665544
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.70 E-value=6.7e-18 Score=170.86 Aligned_cols=153 Identities=12% Similarity=0.116 Sum_probs=105.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+++|++++|+||||||||||++.++|... .|++ +.|.+... ...+.|+..+... -.+.+.+. .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~-----~~~v~~~~~e~~~---~~~~~r~~---~~- 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP-----TGPVIYLPAEDPP---TAIHHRLH---AL- 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC-----CCCEEEEESSSCH---HHHHHHHH---HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC-----CccEEEEECCCCH---HHHHHHHH---HH-
Confidence 478999999999999999999999998654 5665 34554321 2357777655421 01111111 11
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST--GLDPASR---NNLWNVV 427 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts--gLD~~~r---~~i~~~l 427 (568)
+.... ....+++++.+++.+ ..++++..||+||+|++ ++++.+|+++++||||+ ++|+..+ +++++.|
T Consensus 91 g~~~~--~~~~~~~~~~l~l~~--~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 91 GAHLS--AEERQAVADGLLIQP--LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp HTTSC--HHHHHHHHHHEEECC--CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred HhhcC--hhhhhhccCceEEee--cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 11111 133566778888863 67889999999998865 68888999999999999 9998544 7788888
Q ss_pred HHh-c-CCceEEEEcCCHHHHH
Q 008362 428 KRA-K-QGRAIILTTHSMEEAE 447 (568)
Q Consensus 428 ~~~-~-~g~tiil~tH~~~e~~ 447 (568)
+++ + .|+|||+++|+.++++
T Consensus 164 ~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHcCCEEEEEecCCCccc
Confidence 775 3 4999999999998765
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=1.4e-18 Score=182.13 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=96.1
Q ss_pred ceeeeeEE-------EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 265 VAVNGLSL-------ALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 265 ~al~~isl-------~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
..++++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++... .+...++++|.....
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~~ 180 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVHR 180 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBTT
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeecc
Confidence 45566655 67889999999999999999999999999987 56665443333211 122344555543222
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLD 416 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD 416 (568)
..++..+ +||+||..+|+++++|||| |
T Consensus 181 ~~~~~~~--------------------------------------------------~La~aL~~~PdvillDEp~---d 207 (356)
T 3jvv_A 181 DTLGFSE--------------------------------------------------ALRSALREDPDIILVGEMR---D 207 (356)
T ss_dssp TBSCHHH--------------------------------------------------HHHHHTTSCCSEEEESCCC---S
T ss_pred ccCCHHH--------------------------------------------------HHHHHhhhCcCEEecCCCC---C
Confidence 2222221 9999999999999999999 6
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEECC
Q 008362 417 PASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFVDG 459 (568)
Q Consensus 417 ~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~~G 459 (568)
+...+.+.+ ....|++|++|+|+.+.+ ..|||++.|..|
T Consensus 208 ~e~~~~~~~---~~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 208 LETIRLALT---AAETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHHHHH---HHHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHHHHH---HHhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 655333332 245699999999999988 679999888654
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.70 E-value=4e-22 Score=209.93 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=115.0
Q ss_pred eeeeEEEEeC--CcEEEEEcCCCCcHHHHHHHHhCCCCCCc----eEEEEC----CeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 267 VNGLSLALPS--GECFGMLGPNGAGKTTFISMMIGITRTTS----GTAYVQ----GLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 267 l~~isl~i~~--Gei~~LlG~NGaGKTTll~~l~Gl~~p~~----G~i~i~----G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+.|+++|++ |+.++|+||||||||||+|+|+|+++|++ |+++++ |.++.....+. ++|++++|+..++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYIDY 236 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 777664 32221111111 2244444322111
Q ss_pred CCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCCCEEEEeC---CC
Q 008362 337 ETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPKVVYMDE---PS 412 (568)
Q Consensus 337 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-~~p~lllLDE---Pt 412 (568)
. .|+.||+.+ ++. +..++.+..+|+|++|+..+++++. .+|++++||| |+
T Consensus 237 ~-~t~~~nl~~----------------------~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~ 290 (365)
T 1lw7_A 237 A-VRHSHKIAF----------------------IDT---DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 290 (365)
T ss_dssp H-HHHCSSEEE----------------------ESS---CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-
T ss_pred H-HhccCCEEE----------------------EeC---CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCc
Confidence 1 122222111 010 1223334456677788888888774 6999999999 65
Q ss_pred ------CCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEEEECCEEEeecCHHHHHH
Q 008362 413 ------TGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKA 472 (568)
Q Consensus 413 ------sgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~il~~G~l~~~g~~~~l~~ 472 (568)
.++|+..|..+.+.+++. + .|.+|++++|. ++.+++|+++.++++ +...+++++|++
T Consensus 291 ~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 291 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp ----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred ccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 589999999999999875 3 38999999976 577788988877754 445566666543
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.66 E-value=7.8e-20 Score=173.70 Aligned_cols=152 Identities=10% Similarity=-0.001 Sum_probs=101.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|+.. +.+|+.|++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 4779999999999999999999999998 78999999997653211 11234678888644 4578899987654321
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcc--cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVA--DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRA 430 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~--~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~ 430 (568)
...... ..++.+++..++. ... +.++..+|+|++||+.++|++..+|+++ +|+..++.+++.+..+
T Consensus 80 ~~~~~~--~~~~~~~~~~~l~--~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYF--VILDGVVRPDWLP--AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCE--EEECSCCCTTTTH--HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCe--EEEeccCcHHHHH--HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 000000 0011111111221 111 3456789999999999999999999876 6899888898888664
Q ss_pred cC-CceEEEEcC
Q 008362 431 KQ-GRAIILTTH 441 (568)
Q Consensus 431 ~~-g~tiil~tH 441 (568)
.+ +..+|-++|
T Consensus 148 ~~~~~~~i~t~~ 159 (191)
T 1zp6_A 148 GAFEHHVLPVSG 159 (191)
T ss_dssp GGGGGGEEECTT
T ss_pred CcccccEEECCC
Confidence 32 344555553
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.66 E-value=4.4e-16 Score=146.71 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=72.5
Q ss_pred cccccCCCCChhHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLI----GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~----~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
..++++..||||||||++||++++ .+|++++|||||+|||+.+++.++++|++..++.++|++||+.... ..|||
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 456778999999999999999997 4579999999999999999999999999887778999999997654 68999
Q ss_pred EEEE--ECCE
Q 008362 453 LGIF--VDGS 460 (568)
Q Consensus 453 i~il--~~G~ 460 (568)
++.+ .+|.
T Consensus 136 i~~v~~~~g~ 145 (173)
T 3kta_B 136 IIGVSMRDGV 145 (173)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCE
Confidence 9865 4554
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.65 E-value=3.3e-17 Score=161.02 Aligned_cols=146 Identities=12% Similarity=0.184 Sum_probs=88.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCC-----CceEEEECCeeCCC--cHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG--ITRT-----TSGTAYVQGLDIRT--DMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p-----~~G~i~i~G~~i~~--~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+... ...+.++.+|+.+|+ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~ 91 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD 91 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence 588999999999999999999999999 5665 67889998876311 122233445544431 112
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH-HHHHHHHc--CCCCEEEEeCCCCCCCHH--
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR-LSVAISLI--GNPKVVYMDEPSTGLDPA-- 418 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr-l~la~Al~--~~p~lllLDEPtsgLD~~-- 418 (568)
|+.+. ...+..+..+ +.-+.+++ .+|+++++|||++.+|+.
T Consensus 92 ~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 92 NVAYA----------------------------------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp TEEEE----------------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred CeEEE----------------------------------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 21110 0122222211 12122222 689999999999999985
Q ss_pred -----H-----HHHHHHHHHHh-c-CCceEEEEcCCHHHHHH-------------------hCCEEEEEECCE
Q 008362 419 -----S-----RNNLWNVVKRA-K-QGRAIILTTHSMEEAEA-------------------LCDRLGIFVDGS 460 (568)
Q Consensus 419 -----~-----r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~-------------------l~dri~il~~G~ 460 (568)
. .+++++.+++. + .|.|||+++|..++.+. +||++++|++|+
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 23455555543 3 49999999998877654 899999998763
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.65 E-value=5.5e-17 Score=156.97 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=101.8
Q ss_pred cceeeeeEE-EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 264 KVAVNGLSL-ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl-~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
...||++.. .+++|++++|.||||||||||++.+++ ++..+.+++++.+ . .+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~-------------------~----~~~~ 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG-------------------G----FSPE 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC-------------------C----CCHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC-------------------C----CCHH
Confidence 457777775 799999999999999999999999999 4444444444322 0 1111
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhH--HHHHHHHHHHcCC-CCEEEEeCCCCCCCHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM--KRRLSVAISLIGN-PKVVYMDEPSTGLDPAS 419 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~--kqrl~la~Al~~~-p~lllLDEPtsgLD~~~ 419 (568)
+ +.-.....+... +++++.+. +.++|+++ +++++.+++++.+ |+++++||||+++|+..
T Consensus 61 ~-~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~ 122 (220)
T 2cvh_A 61 R-LVQMAETRGLNP-------EEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEE 122 (220)
T ss_dssp H-HHHHHHTTTCCH-------HHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGG
T ss_pred H-HHHHHHhcCCCh-------HHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcC
Confidence 1 110011111111 11222222 22344554 5688888999986 99999999999999843
Q ss_pred H-----HH---HHHHHHHh-c-CCceEEEEcCCHH-------------HHHHhCCEEEEEECCE
Q 008362 420 R-----NN---LWNVVKRA-K-QGRAIILTTHSME-------------EAEALCDRLGIFVDGS 460 (568)
Q Consensus 420 r-----~~---i~~~l~~~-~-~g~tiil~tH~~~-------------e~~~l~dri~il~~G~ 460 (568)
. +. +.+.|+++ + .|.|||+++|... .++..||++++|++..
T Consensus 123 ~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 123 NRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp GSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 2 33 44446654 3 3899999999876 5788999999998653
No 121
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.65 E-value=4.6e-20 Score=192.22 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=124.3
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM----- 319 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~----- 319 (568)
+++++|+++.|+ .+.+++++|+++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 477889999996 357999999999999999999999999999999999999999999999999885321
Q ss_pred HHhhcceEEEcCCCCCCCCCC------------HHHHHHHH-----------------------------hhhcCCC-ch
Q 008362 320 DRIYTSMGVCPQEDLLWETLT------------GREHLLFY-----------------------------GRLKNLK-GP 357 (568)
Q Consensus 320 ~~~r~~ig~~~Q~~~l~~~lT------------v~e~l~~~-----------------------------~~l~~~~-~~ 357 (568)
...++++|+++|++.++...+ +.|.+... ..+.... .+
T Consensus 103 ~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGD 182 (337)
T ss_dssp SCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--
T ss_pred HHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcc
Confidence 234678999999988775322 23322111 0000000 01
Q ss_pred hH---HHHHHHHHHHcCCCCCCcccc-cCCCCChhHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 008362 358 AL---TQAVEESLKSVNLFHGGVADK-QAGKYSGGMKRRLSVAISLIG------NPKVVYMDEPSTGLDPASRNNLWNVV 427 (568)
Q Consensus 358 ~~---~~~~~~~l~~~~L~~~~~~~~-~~~~LSgG~kqrl~la~Al~~------~p~lllLDEPtsgLD~~~r~~i~~~l 427 (568)
+. ++.+.+....+.+. +.|. ...++|+|++|++..|++++. +|+++. ||++|+....++++.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlN---K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVN---KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEE---CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEE---chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 10 00111222223332 3453 335689999999999999997 688886 9999999999999999
Q ss_pred HHh
Q 008362 428 KRA 430 (568)
Q Consensus 428 ~~~ 430 (568)
.+.
T Consensus 256 ~~~ 258 (337)
T 2qm8_A 256 EDH 258 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.64 E-value=6.5e-20 Score=189.56 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=114.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC--------CCCceEEEECCeeCCCc----------------HHHhhcceEEE---c
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT--------RTTSGTAYVQGLDIRTD----------------MDRIYTSMGVC---P 330 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~--------~p~~G~i~i~G~~i~~~----------------~~~~r~~ig~~---~ 330 (568)
++++|+|+||||||||+|+|.|+. .|+.|+|.++|.++... ..+.++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 78999999999987532 22345667877 6
Q ss_pred CCCCCCCCCCHHHHHHHH--hhh-cCC-CchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCC
Q 008362 331 QEDLLWETLTGREHLLFY--GRL-KNL-KGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPK 404 (568)
Q Consensus 331 Q~~~l~~~lTv~e~l~~~--~~l-~~~-~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ 404 (568)
|+..+++++++.|+..+. ..+ +.. ..++. ..+++.++..+++.+ ..++.. ++|+||+||+..+++++.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~--~~~~~~-~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVH--ADEQMN-QFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTT--HHHHHH-HCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHH--HHHHHh-hchHHHHHHHhCCEEEEECcc
Confidence 877666677887776542 110 000 00010 111223344556642 444443 799999999988888888888
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCC
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCD 451 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~d 451 (568)
++ ||| +++.+.+++++.+.+|+++||+..+++.+.|
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHhC
Confidence 77 888 7888888887789999999998777766654
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.64 E-value=1.8e-17 Score=174.86 Aligned_cols=130 Identities=21% Similarity=0.200 Sum_probs=101.7
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC-ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTT-SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~-~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
++++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. ..+..+++++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q~------------ 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQR------------ 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEee------------
Confidence 456655 7899999999999999999999999999998 8999887766532 245678899884
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLW 424 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~ 424 (568)
.+|+. +..+ +.+++++|..+|+++++|||+ |+.. ++
T Consensus 190 ------------------------~~g~~--------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~---~~ 225 (372)
T 2ewv_A 190 ------------------------EVGED--------TKSF------ADALRAALREDPDVIFVGEMR---DLET---VE 225 (372)
T ss_dssp ------------------------EBTTT--------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHH---HH
T ss_pred ------------------------ecCCC--------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHH---HH
Confidence 13331 1233 469999999999999999999 7765 34
Q ss_pred HHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 425 NVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 425 ~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
..++....|.+|+.|+|+.+ +...|||++.|.
T Consensus 226 ~~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l~ 257 (372)
T 2ewv_A 226 TALRAAETGHLVFGTLHTNT-AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHTTTCEEEECCCCCS-HHHHHHHHHHTS
T ss_pred HHHHHHhcCCEEEEEECcch-HHHHHHHHHHhc
Confidence 44555566999999999965 778899987664
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.63 E-value=1.4e-18 Score=172.65 Aligned_cols=142 Identities=19% Similarity=0.177 Sum_probs=106.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh--
Q 008362 276 SGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR-- 350 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~-- 350 (568)
++++++|+|||||||||++++|+ |+..|++|++.++|.+... .....++.++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999999999 9999999999888765322 223345667888888888899999976321
Q ss_pred ------hcCCCchhHHHHHHHHHH--HcC------------CCCCCcccccCCCCChhHHHHHHHHHHH-cCCCCEEEEe
Q 008362 351 ------LKNLKGPALTQAVEESLK--SVN------------LFHGGVADKQAGKYSGGMKRRLSVAISL-IGNPKVVYMD 409 (568)
Q Consensus 351 ------l~~~~~~~~~~~~~~~l~--~~~------------L~~~~~~~~~~~~LSgG~kqrl~la~Al-~~~p~lllLD 409 (568)
+.|.+... .+++.+.+ .++ +. ...++++.+||| |+ +|+ +.+|++++||
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~--r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKD--RLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHH--HHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHH--HHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 23333222 22233221 222 21 235778889999 55 778 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHhc
Q 008362 410 ----EPSTGLDPASRNNLWNVVKRAK 431 (568)
Q Consensus 410 ----EPtsgLD~~~r~~i~~~l~~~~ 431 (568)
|||+|+|+.+++.+++.++++.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.63 E-value=1.1e-18 Score=162.20 Aligned_cols=90 Identities=23% Similarity=0.171 Sum_probs=75.7
Q ss_pred EEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceE
Q 008362 248 SDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 248 ~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig 327 (568)
.+|++|.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|+++.... ..+ .
T Consensus 10 ~~~~~~~~g------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~ 78 (158)
T 1htw_A 10 DEFSMLRFG------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---G 78 (158)
T ss_dssp SHHHHHHHH------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---T
T ss_pred CHHHHHHHH------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---C
Confidence 356777886 357999999999999999999999999999999999999 99999999998875321 111 2
Q ss_pred EEcCCCCCCCCCCHHHHHHHHh
Q 008362 328 VCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 328 ~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
+++|+..++ .+|+.|++.+.+
T Consensus 79 ~~~q~~~l~-~ltv~e~l~~~g 99 (158)
T 1htw_A 79 KMIYHFDLY-RLADPEELEFMG 99 (158)
T ss_dssp EEEEEEECT-TCSCTTHHHHST
T ss_pred cceeccccc-cCCcHHHHHHcC
Confidence 799998888 899999997643
No 126
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.2e-17 Score=177.75 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=117.6
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHH
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDR 321 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~ 321 (568)
.+++++ +|.|++ .+ ++++||++++|++ +||+||||||||||+|+|+|+. ++|.++.. ....
T Consensus 16 ~l~~~~-~~~y~~------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGV 79 (427)
T ss_dssp -CCCCC-CC-CC--------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSC
T ss_pred eEEEee-EEEECC------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccc
Confidence 466677 888863 45 9999999999999 9999999999999999999984 33444321 1122
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHhhhcC-CCch----hHHHHHHHHHHHc-CCCCC--CcccccC-----------
Q 008362 322 IYTSMGVCPQEDLLWETLTGREHLLFYGRLKN-LKGP----ALTQAVEESLKSV-NLFHG--GVADKQA----------- 382 (568)
Q Consensus 322 ~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~-~~~~----~~~~~~~~~l~~~-~L~~~--~~~~~~~----------- 382 (568)
.++.+||++|++.+++.+|+.||+.+...... ...+ ...+..+++++.. ++... ...+.++
T Consensus 80 ~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 80 QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 34679999999998888999999876432110 0011 1234455566654 43210 0122221
Q ss_pred CCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCceEEEEcCC
Q 008362 383 GKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR-AK-QGRAIILTTHS 442 (568)
Q Consensus 383 ~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~-~~-~g~tiil~tH~ 442 (568)
..|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ ++ .|.+|+.+|.+
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 2455554 7899999999999999999999999999999999986 65 59999999875
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.61 E-value=3.4e-16 Score=163.40 Aligned_cols=122 Identities=19% Similarity=0.194 Sum_probs=93.4
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC-CCceEEEEC-CeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITR-TTSGTAYVQ-GLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~-p~~G~i~i~-G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
.++++++. .+|++++|+||||||||||+|+|+|+.+ |++|+|.++ |.+..+ ..++.++++||+..+++..|++|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t---t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT---TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc---eEEEEEEEECCCCEecCcccHHH
Confidence 46677764 4899999999999999999999999999 999999987 765422 23467999999999999889998
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISL 399 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al 399 (568)
+ .+.+.+.++..+.+.++++.+++. ++.++.+.+|| ||+||+++|+++
T Consensus 281 ~-----~l~~l~~~e~~~~~~e~l~~~gl~--~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 281 F-----GLWHLEPEQITQGFVEFHDYLGHC--KYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C-----CCCCCCHHHHHHTSGGGGGGTTCS--SSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred h-----hhcCCCHHHHHHHHHHHHHHcCCc--hhcCCCcccCC-HHHHHHHHHhcC
Confidence 4 233455556667788899999996 48999999999 999999999864
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.60 E-value=5.3e-18 Score=182.86 Aligned_cols=157 Identities=17% Similarity=0.103 Sum_probs=111.0
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HH--hhcceEEEcCCCCCCCCC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DR--IYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~--~r~~ig~~~Q~~~l~~~l 339 (568)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+.... .. .|++++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 47899999999999999999999999999999999999999999988875421 12 367899999998888889
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc-CCCC-EEEEeCCCCCCCH
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI-GNPK-VVYMDEPSTGLDP 417 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~-~~p~-lllLDEPtsgLD~ 417 (568)
|+++++.+... ++.. .+ +++..|+.+ ....... -.+|++.+++++. ..|. +++...|++|.|.
T Consensus 363 tV~e~l~~a~~-~~~D------vV--LIDTaGrl~--~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~a 427 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------VL--IADTAGRLQ--NKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA 427 (503)
T ss_dssp HHHHHHHHHHH-TTCS------EE--EECCCCSCC--CHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH
T ss_pred HHHHHHHHHHh-cCCC------EE--EEeCCCccc--hhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHH
Confidence 99999987533 2211 00 233344421 1111222 3357888888774 4563 5555558988665
Q ss_pred HHHHHHHHHHHHh--cCCceEEEEcCCHHH
Q 008362 418 ASRNNLWNVVKRA--KQGRAIILTTHSMEE 445 (568)
Q Consensus 418 ~~r~~i~~~l~~~--~~g~tiil~tH~~~e 445 (568)
. +.++.. .-+.|.++.|| +++
T Consensus 428 l------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 428 V------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp H------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred H------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 4 233333 24789999999 565
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.58 E-value=1.5e-16 Score=167.09 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=105.2
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEc-CCCCCCCCCCHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCP-QEDLLWETLTGREHL 345 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~-Q~~~l~~~lTv~e~l 345 (568)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+-. .....++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCcccc----------
Confidence 39999999999999999999999999999999999999999999985311 1222456789998 65431
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
+ ++++..+|-.|+.++..+|+.+++|||.. .+.++
T Consensus 234 -------------------------~-------------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~ 268 (361)
T 2gza_A 234 -------------------------E-------------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD 268 (361)
T ss_dssp -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred -------------------------c-------------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence 0 02233477788888888999999999986 35667
Q ss_pred HHHHhcCC-ceEEEEcCCHHHHHHhCCEEEEEECCE
Q 008362 426 VVKRAKQG-RAIILTTHSMEEAEALCDRLGIFVDGS 460 (568)
Q Consensus 426 ~l~~~~~g-~tiil~tH~~~e~~~l~dri~il~~G~ 460 (568)
.++.+..| .|++.++|..+ +...+||+..|..|.
T Consensus 269 ~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 269 FINVAASGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 77776654 57899999965 778899999888774
No 130
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.57 E-value=2.9e-16 Score=162.63 Aligned_cols=144 Identities=12% Similarity=0.037 Sum_probs=102.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHhhc--ceEEEcCCCCCCCCCCHHHHHH
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRIYT--SMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~r~--~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.... ..+++ .+.+++|...++|.++++||+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999985421 12233 4569999999999999999998
Q ss_pred HHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 347 FYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 347 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
+... .+... -+++..|+.+ ..+....+|| .+++++..++.+++||.+| | +.+.+.
T Consensus 206 ~~~~-~~~d~--------vliDtaG~~~--~~~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~~~~~ 260 (328)
T 3e70_C 206 HAKA-RGIDV--------VLIDTAGRSE--TNRNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NAIVEQ 260 (328)
T ss_dssp HHHH-HTCSE--------EEEEECCSCC--TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------THHHHH
T ss_pred HHHh-ccchh--------hHHhhccchh--HHHHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HHHHHH
Confidence 6432 11100 0133344431 2333333343 4899999988899999554 4 344555
Q ss_pred HHHhc--CCceEEEEcCC
Q 008362 427 VKRAK--QGRAIILTTHS 442 (568)
Q Consensus 427 l~~~~--~g~tiil~tH~ 442 (568)
++... .+.|+|++||.
T Consensus 261 ~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 261 ARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHSCCCEEEEECG
T ss_pred HHHHHHhcCCCEEEEeCc
Confidence 55543 48999999994
No 131
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.57 E-value=7e-18 Score=184.65 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=117.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee-CCCcHHHhhcceEEEcCCC---------
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD-IRTDMDRIYTSMGVCPQED--------- 333 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~-i~~~~~~~r~~ig~~~Q~~--------- 333 (568)
..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+ +.... +..+++..|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHH
Confidence 568899999999999999999999999999999999999999999999865 22110 12344444332
Q ss_pred -------------CCCCCCCHHHHHHHHhhhc-CCC------chhHHHHHHHHHHH-cCCCCC--Cccc---ccCCCCCh
Q 008362 334 -------------LLWETLTGREHLLFYGRLK-NLK------GPALTQAVEESLKS-VNLFHG--GVAD---KQAGKYSG 387 (568)
Q Consensus 334 -------------~l~~~lTv~e~l~~~~~l~-~~~------~~~~~~~~~~~l~~-~~L~~~--~~~~---~~~~~LSg 387 (568)
.++..++..|++.+..... |.. .....+.++++... +++... +..+ .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 2334567777666554433 311 11222222222211 222210 0112 33456899
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEE--EcCCHHHHHHhCC
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIIL--TTHSMEEAEALCD 451 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil--~tH~~~e~~~l~d 451 (568)
|||||.++|. + | |+||||..++.+++.+.+.. +++|+++ +||++++++..|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999887652 1 7 99999999998888887764 5889985 9999999998884
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=1.3e-16 Score=163.60 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=90.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhh-cceEEEcCCCCCC-----CCCCHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDLLW-----ETLTGRE 343 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r-~~ig~~~Q~~~l~-----~~lTv~e 343 (568)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.......+ +.+||++|.+.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45579999999999999999999999 99999999999 9988865433333 3689999998653 67899 8
Q ss_pred HH--HHH------hhhcC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHH
Q 008362 344 HL--LFY------GRLKN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAI 397 (568)
Q Consensus 344 ~l--~~~------~~l~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~ 397 (568)
++ .|. ++.++ ...++...+++++++.++|.+ ...+++++.|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISC-ERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCH-HHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 87 332 12333 233444567899999999962 3678999999999999999986
No 133
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.53 E-value=2.2e-14 Score=151.11 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=69.9
Q ss_pred ccCCCCChhHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCE
Q 008362 380 KQAGKYSGGMKRRL------SVAISLIGN-PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 380 ~~~~~LSgG~kqrl------~la~Al~~~-p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dr 452 (568)
+++.+||||||||+ ++|+|++++ |+++||||||+|||+..++.+++.|++..++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567899999 999999999999999999999999998766679999999986 6789999
Q ss_pred EEEEE
Q 008362 453 LGIFV 457 (568)
Q Consensus 453 i~il~ 457 (568)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 134
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=1.7e-17 Score=175.44 Aligned_cols=168 Identities=11% Similarity=0.104 Sum_probs=127.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC------------CCCCCceEEEECCeeCCCcHH--Hhhcce---EEEcCCCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG------------ITRTTSGTAYVQGLDIRTDMD--RIYTSM---GVCPQEDLL 335 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G------------l~~p~~G~i~i~G~~i~~~~~--~~r~~i---g~~~Q~~~l 335 (568)
.+++|+.+||+|+||||||||+|+|+| ...|+.|.+.+.|.++....+ .-++.+ .++++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 667999999999854421111 112223 477888888
Q ss_pred CCCCCHHHHH--HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCC--CEEEEeCC
Q 008362 336 WETLTGREHL--LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNP--KVVYMDEP 411 (568)
Q Consensus 336 ~~~lTv~e~l--~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p--~lllLDEP 411 (568)
.+..+..|++ .+...++... .++..++.. .+..+..+||++ +| ++.++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~----~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF----DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC----CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc----ccceeeeecccc------------Ccchhhhhchhh
Confidence 8888877766 5555554321 123333332 245666677764 99 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEE-EEECC-EEEeecCH
Q 008362 412 STGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLG-IFVDG-SLQCIGNP 467 (568)
Q Consensus 412 tsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~-il~~G-~l~~~g~~ 467 (568)
+.++|+..+++.|+.+++. . .|+||+ +|++++++.+||++. +|.+| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 5 477764 999999999999998 99999 88776654
No 135
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.51 E-value=2.2e-15 Score=141.90 Aligned_cols=112 Identities=13% Similarity=0.173 Sum_probs=77.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
+++++|+.++|.||||+|||||+++++|...|++|... .| +++.+.+...
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-----------------~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-----------------YF----------FDTKDLIFRL--- 82 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-----------------CE----------EEHHHHHHHH---
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-----------------EE----------EEHHHHHHHH---
Confidence 45567999999999999999999999998876666310 01 2333332211
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRA 430 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~l~~~ 430 (568)
......-.. . -+...+.+|++|+||||++ ++|+..++.+.+++.+.
T Consensus 83 ------------~~~~~~~~~------~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 83 ------------KHLMDEGKD------T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp ------------HHHHHHTCC------S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred ------------HHHhcCchH------H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 111111000 0 0112234999999999985 99999999999999875
Q ss_pred -cCCceEEEEcCCHHHH
Q 008362 431 -KQGRAIILTTHSMEEA 446 (568)
Q Consensus 431 -~~g~tiil~tH~~~e~ 446 (568)
.+|+++|+|||...+.
T Consensus 130 ~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 130 YNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTTCEEEEECCCCSCC
T ss_pred HHcCCCEEEEcCCChhH
Confidence 5799999999987543
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=2.3e-14 Score=149.03 Aligned_cols=136 Identities=18% Similarity=0.180 Sum_probs=79.7
Q ss_pred EEEEcCCCCcHHHHHHHHhC-CCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCch-
Q 008362 280 FGMLGPNGAGKTTFISMMIG-ITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGP- 357 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G-l~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~- 357 (568)
+.|.||||+||||++++++| +..|+.|++.++|.+...... .+..+++++|.+.+.-..+ + .+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEEEECCC--------------CCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceEEecHh--h--------cCCcchH
Confidence 88999999999999999999 899999999999987653322 2567899998765321111 0 011111
Q ss_pred hHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEE
Q 008362 358 ALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAII 437 (568)
Q Consensus 358 ~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tii 437 (568)
..++.++++.+..++. ... +||| +.++|+++++|||++ ||+.++..+.+.+.+..++.++|
T Consensus 108 ~~~~~i~~~~~~~~~~------~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~I 168 (354)
T 1sxj_E 108 VIQELLKEVAQMEQVD------FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLI 168 (354)
T ss_dssp HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEE
T ss_pred HHHHHHHHHHHhcccc------ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEE
Confidence 2223333333333332 111 5676 788999999999999 99999999999999877789999
Q ss_pred EEcCCHHH
Q 008362 438 LTTHSMEE 445 (568)
Q Consensus 438 l~tH~~~e 445 (568)
++||+.+.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999764
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.48 E-value=1.3e-17 Score=173.37 Aligned_cols=175 Identities=20% Similarity=0.221 Sum_probs=122.7
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCC-------cEEEEEcCCCCcHHHHHHHHhCCC----CCCceEEEECCee
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSG-------ECFGMLGPNGAGKTTFISMMIGIT----RTTSGTAYVQGLD 314 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~G-------ei~~LlG~NGaGKTTll~~l~Gl~----~p~~G~i~i~G~~ 314 (568)
++.+++++.||+ ..+++++++.+++| +.++|.||||+|||||+++|+|.+ .|++|.+..+|.+
T Consensus 19 lr~~~l~~~~g~------~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 19 LRPKSLDEFIGQ------ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp TSCSSGGGCCSC------HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred cCCccHHHccCc------HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 444566667763 46899999999876 899999999999999999999988 7788888777666
Q ss_pred CCCcHHHh-hcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC----chhHHHHHHHHHHHcCCCCCCcccccCCCCChhH
Q 008362 315 IRTDMDRI-YTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK----GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGM 389 (568)
Q Consensus 315 i~~~~~~~-r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~ 389 (568)
+....... ++.+++++|.+.+.+ ++.|++.......+.. .....+.++..++.+++. .+++++..||+|+
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li---~at~~~~~Ls~~l 167 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV---GATTRSGLLSSPL 167 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEE---EEESCGGGSCHHH
T ss_pred HHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE---EecCCcccCCHHH
Confidence 53222222 457999999888765 7888885433322211 112234455566666663 2677889999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCceEEEEcCCHHHHHHhCCE
Q 008362 390 KRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--QGRAIILTTHSMEEAEALCDR 452 (568)
Q Consensus 390 kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--~g~tiil~tH~~~e~~~l~dr 452 (568)
|||+.++ .+|||..+.++.+++++.. .+ ++|+.+.++.+|++
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 9998654 7888889999999998743 24 37999999988876
No 138
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.47 E-value=8.2e-15 Score=134.64 Aligned_cols=92 Identities=16% Similarity=0.335 Sum_probs=71.7
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
.+++++ +|+.++|+||||+|||||+++++|...+ +| .+++++.++...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 355665 8999999999999999999999998877 46 555555432211
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNN 422 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~ 422 (568)
+++.+|+++++|||++ +|+..++.
T Consensus 79 -------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~ 102 (149)
T 2kjq_A 79 -------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQAL 102 (149)
T ss_dssp -------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHH
T ss_pred -------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHH
Confidence 2345799999999998 66666999
Q ss_pred HHHHHHHh-cCCce-EEEEcCC
Q 008362 423 LWNVVKRA-KQGRA-IILTTHS 442 (568)
Q Consensus 423 i~~~l~~~-~~g~t-iil~tH~ 442 (568)
+++++.+. .+|++ +|++||.
T Consensus 103 l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 103 LFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHcCCcEEEEECCC
Confidence 99999875 45788 8999984
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.47 E-value=4.3e-17 Score=174.10 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=105.9
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----H
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----D 320 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~ 320 (568)
+.++++.+.|+ ...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.|.++.... .
T Consensus 144 ~~l~~Lg~~~~------~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~ 215 (418)
T 1p9r_A 144 LDLHSLGMTAH------NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQT 215 (418)
T ss_dssp CCGGGSCCCHH------HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEE
T ss_pred CCHHHcCCCHH------HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceE
Confidence 45566666664 35588888 53 899999999999999999999999999999999999998774321 1
Q ss_pred HhhcceEEEc---------CCCCC--CCC----CCHHHHHHHHhhhc----CCCchhHHHHHHHHHHHcCCCCCCccccc
Q 008362 321 RIYTSMGVCP---------QEDLL--WET----LTGREHLLFYGRLK----NLKGPALTQAVEESLKSVNLFHGGVADKQ 381 (568)
Q Consensus 321 ~~r~~ig~~~---------Q~~~l--~~~----lTv~e~l~~~~~l~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 381 (568)
.+++.+|+.+ |++.+ ++. .|+.+++.+...-+ .+......+.++ .|..+++.+ . ..
T Consensus 216 ~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~--~--~~ 290 (418)
T 1p9r_A 216 QVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEP--F--LI 290 (418)
T ss_dssp ECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCH--H--HH
T ss_pred EEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcH--H--HH
Confidence 2344566655 88765 343 68999988753211 011112223333 567788852 2 47
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 382 AGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 382 ~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+.+|||||+|| ||++++.+|++..-
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 88999999999 99999999998763
No 140
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=3.3e-16 Score=147.40 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCC-c---HHHhh-cceE----EEcCCCCCCCCCCHHHHH
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRT-D---MDRIY-TSMG----VCPQEDLLWETLTGREHL 345 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~-~---~~~~r-~~ig----~~~Q~~~l~~~lTv~e~l 345 (568)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.. + .+.+| +.+| +++|++.+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999999998 8999999988543 1 34555 4677 889987665 000
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHH-c-CCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE-------EEeCCCCC--
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKS-V-NLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV-------YMDEPSTG-- 414 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll-------lLDEPtsg-- 414 (568)
+ ..+....+++.++. + +++ ..-...||||||||++||||++++|++. .=|.|..+
T Consensus 77 -------~--~~~~~a~l~~~i~~~l~g~d-----t~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -------V--SEEEGNDLDWIYERYLSDYD-----LVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -------C--CHHHHTCHHHHHHHHTTTCS-----EEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -------C--ChhhhhCHHHHHHhhCCCCC-----EEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 0 01111134445444 3 332 1222349999999999999999999873 22444322
Q ss_pred -CCHHHHHHHHHHHHH-hcCC
Q 008362 415 -LDPASRNNLWNVVKR-AKQG 433 (568)
Q Consensus 415 -LD~~~r~~i~~~l~~-~~~g 433 (568)
+|......+.+.|.+ .++|
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC-
T ss_pred ccCcccHHHHHHHHHHHHhcc
Confidence 233344566666644 4443
No 141
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.43 E-value=5.7e-16 Score=159.25 Aligned_cols=140 Identities=11% Similarity=0.087 Sum_probs=104.3
Q ss_pred CeEEEEeEEEEcCCCCCCCccceeeeeEEEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhCCCC--
Q 008362 244 HAIISDNLRKIYPGRDGNPEKVAVNGLSLAL-------------------PSGECFGMLGPNGAGKTTFISMMIGITR-- 302 (568)
Q Consensus 244 ~~i~~~~l~k~y~~~~~~~~~~al~~isl~i-------------------~~Gei~~LlG~NGaGKTTll~~l~Gl~~-- 302 (568)
.+|+++||+|.|+ ++++++++.+ .+|+++||+||||||||||+++|+|+++
T Consensus 36 ~~i~~~~v~~~y~--------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp TTCCHHHHHHTHH--------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred cccchHhHHHHHH--------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3688999999994 5899999988 9999999999999999999999999988
Q ss_pred CCceEEEE---CCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc
Q 008362 303 TTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD 379 (568)
Q Consensus 303 p~~G~i~i---~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~ 379 (568)
|++|+|.+ +|.... ...++.+|++ |...+++.+|+.+++.+...++.... .+ .
T Consensus 108 ~~~G~i~vi~~d~~~~~---~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~--------------~i------~ 163 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP---NQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP--------------NV------T 163 (308)
T ss_dssp TTCCCEEEEEGGGGBCC---HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS--------------CE------E
T ss_pred CCCCeEEEEecCCccCc---HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC--------------ce------e
Confidence 99999999 887642 2345668898 88888888999999998776653110 00 1
Q ss_pred ccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 008362 380 KQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDP 417 (568)
Q Consensus 380 ~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~ 417 (568)
.+.-..+.+ +|+..+.+.+.+|+++|+|.|....|+
T Consensus 164 ~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 164 APVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred ccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 111111111 233222345678999999999998874
No 142
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.41 E-value=2.6e-15 Score=153.88 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=77.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhh-cceEEEcCCCC-------------
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIY-TSMGVCPQEDL------------- 334 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r-~~ig~~~Q~~~------------- 334 (568)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.......+ +.+|+++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455689999999999999999999999999999999999 9988865332222 36899999975
Q ss_pred ---CCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh
Q 008362 335 ---LWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG 387 (568)
Q Consensus 335 ---l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg 387 (568)
+++++|+ ||+.|.... ...+...++.++|+.++|.. +..+++++.||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L~~-~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEIAE-SRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCCCH-HHHHHHHHHHHH
Confidence 5888999 998874321 12334467899999999952 467888888885
No 143
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.41 E-value=4.4e-14 Score=150.00 Aligned_cols=153 Identities=14% Similarity=0.173 Sum_probs=93.7
Q ss_pred eeeee-EEEEeCCcEEEEEcCCCCcHHHHHH--HHhCCCCCCce-----EEEECCeeCCCc--HHHhhcceEEEcCCCCC
Q 008362 266 AVNGL-SLALPSGECFGMLGPNGAGKTTFIS--MMIGITRTTSG-----TAYVQGLDIRTD--MDRIYTSMGVCPQEDLL 335 (568)
Q Consensus 266 al~~i-sl~i~~Gei~~LlG~NGaGKTTll~--~l~Gl~~p~~G-----~i~i~G~~i~~~--~~~~r~~ig~~~Q~~~l 335 (568)
.||.+ .=.+++|++++|+||||||||||++ ++.++.+++.| .+++++++.... ...+++++|+.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----
Confidence 44442 2378999999999999999999999 45677777544 888888763221 1222344554433
Q ss_pred CCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCCh-hHHHHHHHHHHH--cCCCCEEEEeCCC
Q 008362 336 WETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSG-GMKRRLSVAISL--IGNPKVVYMDEPS 412 (568)
Q Consensus 336 ~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSg-G~kqrl~la~Al--~~~p~lllLDEPt 412 (568)
++.+|+.+.. ..++ .+.+.+.-++++ ..+|+++++|||+
T Consensus 242 ----~vleni~~~~----------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 242 ----DALNNVAYAR----------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp ----HHHHTEEEEE----------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred ----hHhhcEEEec----------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 2333322110 0111 111222222222 2579999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHh-c-CCceEEEEcCCH-------------------HHHHHhCCEEEEEECC
Q 008362 413 TGLDPASR------------NNLWNVVKRA-K-QGRAIILTTHSM-------------------EEAEALCDRLGIFVDG 459 (568)
Q Consensus 413 sgLD~~~r------------~~i~~~l~~~-~-~g~tiil~tH~~-------------------~e~~~l~dri~il~~G 459 (568)
+.+|+... +++.+.|+++ + .|.|||+++|.. ..++..||.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997532 4566667664 3 399999999983 2246778988888876
Q ss_pred E
Q 008362 460 S 460 (568)
Q Consensus 460 ~ 460 (568)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 4
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=1.9e-14 Score=153.47 Aligned_cols=166 Identities=17% Similarity=0.142 Sum_probs=101.9
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
-++++|+++.|++++|+|+||||||||+++|+|..+ .+.+++..+ +...+|++++++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT----l~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT----LSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS----SCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce----ecceeeEEEecCc--ceEEEEeccc
Confidence 479999999999999999999999999999999843 344444322 1234566655430 0011111100
Q ss_pred H---HhhhcCCCchhH--HHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHH
Q 008362 347 F---YGRLKNLKGPAL--TQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRN 421 (568)
Q Consensus 347 ~---~~~l~~~~~~~~--~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~ 421 (568)
+ .....++..... .++++.++..+++. ++++.+||+|++|++.+|++|+..|.++++ +++|+..+.
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~ 285 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE 285 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH
Confidence 0 001111111100 01122233334441 567788999999999999999999999999 999998773
Q ss_pred HHHHHHHHhc-CCceEEE-EcCCHHHHHHhCCEE
Q 008362 422 NLWNVVKRAK-QGRAIIL-TTHSMEEAEALCDRL 453 (568)
Q Consensus 422 ~i~~~l~~~~-~g~tiil-~tH~~~e~~~l~dri 453 (568)
.+.++.+.++ .+.+++. |+|.-+.++.+++.+
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 3333333443 4666654 556666666666554
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.40 E-value=9.1e-15 Score=148.99 Aligned_cols=127 Identities=15% Similarity=0.071 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh------
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG------ 349 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~------ 349 (568)
++.++||.|++|||||||.+.|.+++.+. | . . ++.+.+++|++.+++. +.++|+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 57899999999999999999999998763 2 0 1 3445666999988875 8889987742
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCC------CCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLF------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA 418 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~------~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~ 418 (568)
..+|.+.....+.+.+.++.+.-. ..-....+...+||||+||+++|++...+|+|+|+|||++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 123334333344556666665432 001134556789999999999973333399999999999999985
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.36 E-value=1.5e-14 Score=148.26 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE---CCeeCCCcHHHhhcceEEEcCCCCCCC----CCCHHHH
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV---QGLDIRTDMDRIYTSMGVCPQEDLLWE----TLTGREH 344 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i---~G~~i~~~~~~~r~~ig~~~Q~~~l~~----~lTv~e~ 344 (568)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+++.....+..+|+++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 456789999999999999999999999999999999999 888775543222333899999987765 6899 88
Q ss_pred HH-HHhhh---------cC-CCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHH
Q 008362 345 LL-FYGRL---------KN-LKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRR 392 (568)
Q Consensus 345 l~-~~~~l---------~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqr 392 (568)
+. .+..+ ++ ....+....++++++.++|.+ .+.+...+++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~--~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ--YRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH--HHHHHHHHHHHHHhhc
Confidence 83 22211 22 122333457899999999962 4556666777788773
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.35 E-value=2.6e-16 Score=159.17 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=107.9
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~-~l~~~lTv 341 (568)
..+++++++.+++| ++|.||||+|||||+|+|+|...+ |.+.++|.++... ....++.+++++|.. ...+.+++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999877 7999999887542 233456688888874 45566666
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC--------
Q 008362 342 REHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-------- 413 (568)
Q Consensus 342 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-------- 413 (568)
.|++...+..++. ... + .+. ...++...+|||||+||+.+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~------~~~----~--~~~--~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 109 FDEVDALCPRRSD------RET----G--ASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EETCTTTCC---------------------CT--THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred eehhhhhhcccCC------Ccc----h--HHH--HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 6776543321110 000 0 121 3567788899999999999999999999975 99864
Q ss_pred ----CCCHHHHHHHHHHHH
Q 008362 414 ----GLDPASRNNLWNVVK 428 (568)
Q Consensus 414 ----gLD~~~r~~i~~~l~ 428 (568)
--|...|+++++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 347888888888764
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.31 E-value=1.8e-16 Score=152.38 Aligned_cols=152 Identities=16% Similarity=0.208 Sum_probs=88.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC-------------CCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR-------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLT 340 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~-------------p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lT 340 (568)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++.. ..+..++.+ +|+..++. .+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~-~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEH-AE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEE-EE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEee-ee
Confidence 5799999999999999999999999875 67776 47766532 233444433 45443322 23
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHH----HHHHHH-HHcCCCCEEEEeCCCCCC
Q 008362 341 GREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKR----RLSVAI-SLIGNPKVVYMDEPSTGL 415 (568)
Q Consensus 341 v~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kq----rl~la~-Al~~~p~lllLDEPtsgL 415 (568)
+.+|+ +|.+. +.++++++.-... ..+.. + .|-++ ++ .|+ +++.+|++.+|||||+++
T Consensus 76 ~~~n~------~g~~~----~~i~~~~~~~~~~---~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL------YGTSK----EAVRAVQAMNRIC---VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE------EEEEH----HHHHHHHHTTCEE---EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc------CCCCH----HHHHHHHHcCCcE---EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 33333 23222 2344444431110 00100 0 11111 12 345 677788888888899999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHhCCEEEEEE
Q 008362 416 DPASRNNLWNVVKRAKQGRAIILTTHSMEEAEALCDRLGIFV 457 (568)
Q Consensus 416 D~~~r~~i~~~l~~~~~g~tiil~tH~~~e~~~l~dri~il~ 457 (568)
|..+.+.+.+.|.+..++ +..+|. . ..+|+|++++
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGGS--T--TTCSEEEECS
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhhc--c--CCceEEEECC
Confidence 999988898888765433 233452 1 4689987765
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.29 E-value=2.7e-13 Score=129.73 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=81.7
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-HHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-DRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
|+++.+|++++|+||||||||||+++|+|+.+ .+.+.|.++.... ...+..++|+||++.+++.+++.+++..+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57788999999999999999999999999964 5788887765422 233567999999988888777777665444
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCC
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEP 411 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEP 411 (568)
...+.......+.+++.++.-.. -..+ +..+-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~---vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD---VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE---EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe---EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 33332211222345555543111 0112 334445555667778888988887
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.27 E-value=6.8e-12 Score=128.09 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=94.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNL 354 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~ 354 (568)
.+|++++++|||||||||+++.|++.+.+++| ++++++.++.. ..++.|++..++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-----------------~~V~lv~~D~~---r~~a~eqL~~~~~~--- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-----------------KKIAFITTDTY---RIAAVEQLKTYAEL--- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-----------------CCEEEEECCCS---STTHHHHHHHHHTT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----------------CEEEEEecCcc---cchHHHHHHHHHHh---
Confidence 47999999999999999999999999988778 13455555542 24566666654432
Q ss_pred CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---
Q 008362 355 KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK--- 431 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~--- 431 (568)
.|+.. ... .+ +..-+.+++ .+.+|+++|+| |+|+|+..+..++++.+-..
T Consensus 160 ---------------~gl~~--~~~-----~~-~~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 160 ---------------LQAPL--EVC-----YT-KEEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ---------------TTCCC--CBC-----SS-HHHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ---------------cCCCe--Eec-----CC-HHHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 23321 111 12 222344444 45999999999 99999988877777655433
Q ss_pred C-CceEEE-EcCCHHHHHHhCCEEEEEECCEEEe
Q 008362 432 Q-GRAIIL-TTHSMEEAEALCDRLGIFVDGSLQC 463 (568)
Q Consensus 432 ~-g~tiil-~tH~~~e~~~l~dri~il~~G~l~~ 463 (568)
. +..+++ +||..++++++|+++..+..+.++.
T Consensus 213 ~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 213 SIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2 345555 5999999999999876555555554
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.25 E-value=6.8e-13 Score=130.25 Aligned_cols=172 Identities=16% Similarity=0.080 Sum_probs=93.7
Q ss_pred ceeeee-EEEEeCCcEEEEEcCCCCcHHHHH-HHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHH
Q 008362 265 VAVNGL-SLALPSGECFGMLGPNGAGKTTFI-SMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGR 342 (568)
Q Consensus 265 ~al~~i-sl~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~ 342 (568)
..||++ .-.+++|++++|.|||||||||++ +++.+..+...+.+++.+........+..+.+|+.+|+....+.+++.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 89 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMV 89 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEE
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEE
Confidence 456666 667999999999999999999995 555555555556666665432211112223445544321000011110
Q ss_pred HHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCC--CHH
Q 008362 343 EHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL--DPA 418 (568)
Q Consensus 343 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgL--D~~ 418 (568)
+. ... .++... ..+.....-+....+....++.++ .+|+++++|||++.+ |+.
T Consensus 90 ~~----------~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~ 146 (247)
T 2dr3_A 90 DA----------FTA-----------GIGKSK--EYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPA 146 (247)
T ss_dssp EC----------STT-----------TTCC----CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGG
T ss_pred ec----------chh-----------hccccc--ccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHH
Confidence 00 000 000000 000000011112222233333333 579999999999988 664
Q ss_pred HHHHHHHHHHH-h-cCCceEEEEcCCHHH--------HHHhCCEEEEEECC
Q 008362 419 SRNNLWNVVKR-A-KQGRAIILTTHSMEE--------AEALCDRLGIFVDG 459 (568)
Q Consensus 419 ~r~~i~~~l~~-~-~~g~tiil~tH~~~e--------~~~l~dri~il~~G 459 (568)
.+++....+.+ . +.|.||++++|...+ ++..||.++.|+..
T Consensus 147 ~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~~ 197 (247)
T 2dr3_A 147 MARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDLD 197 (247)
T ss_dssp GHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEEE
Confidence 44454444444 4 358999999999876 56889999999753
No 152
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.24 E-value=2.2e-14 Score=138.67 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=90.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhh
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGR 350 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~ 350 (568)
.++|+++||+||||||||||+++|+|+++|+ .|.|.++|..+.... +..++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~---~~~~~~~~~------------------- 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL---LEPRGLLPR------------------- 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH---HGGGTCGGG-------------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH---HHHhccccc-------------------
Confidence 4689999999999999999999999999864 666666665543211 111111110
Q ss_pred hcCCCchhHHHHHHHHHHHc----CCCCCCcccccCCCCChhHHHHHHHH-HHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 008362 351 LKNLKGPALTQAVEESLKSV----NLFHGGVADKQAGKYSGGMKRRLSVA-ISLIGNPKVVYMDEPSTGLDPASRNNLWN 425 (568)
Q Consensus 351 l~~~~~~~~~~~~~~~l~~~----~L~~~~~~~~~~~~LSgG~kqrl~la-~Al~~~p~lllLDEPtsgLD~~~r~~i~~ 425 (568)
++.+.........+.+..+ ++.. .. ......+|+||+||+++| ++++.++.++++|||. |.
T Consensus 77 -~~~~~~~~~~~~~~~l~~l~~~~~i~~-p~-~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~ 142 (208)
T 3c8u_A 77 -KGAPETFDFEGFQRLCHALKHQERVIY-PL-FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WR 142 (208)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHHCSCEEE-EE-EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GG
T ss_pred -CCCCchhhHHHHHHHHHHHhcCCceec-cc-CCccccCCCCCceEEcCCCcEEEECCceeccCCch-----------hH
Confidence 0111000011111222211 1110 11 223345799999999887 7777777777788873 21
Q ss_pred HHHHhcCCceEEEEcCCHHH-HHHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 426 VVKRAKQGRAIILTTHSMEE-AEALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 426 ~l~~~~~g~tiil~tH~~~e-~~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+.. .--.+++++++.+. ..+++.|. +..|+ +.+++.+++
T Consensus 143 ~l~~--~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 143 DLTA--IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp GGGG--TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred HHHH--hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 1211 12367888888876 66777762 34454 677776654
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.24 E-value=3.7e-16 Score=153.44 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=73.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh-CCCCCCceEEEECCeeCCCcH--HHhhcceEEEcCCCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMI-GITRTTSGTAYVQGLDIRTDM--DRIYTSMGVCPQEDLLWETLT 340 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~-Gl~~p~~G~i~i~G~~i~~~~--~~~r~~ig~~~Q~~~l~~~lT 340 (568)
.+..+++||++++|+++||+||||||||||+++|+ |+.++. ..+.+..+.. ...+..++|.+++...++.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLC 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhh
Confidence 45789999999999999999999999999999999 998541 2333221110 001123446666554444333
Q ss_pred HHHHHHH----HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH-HHH-HHHcCCCCEEEEeCCCCC
Q 008362 341 GREHLLF----YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL-SVA-ISLIGNPKVVYMDEPSTG 414 (568)
Q Consensus 341 v~e~l~~----~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl-~la-~Al~~~p~lllLDEPtsg 414 (568)
..+++.. ....++.+.+ .+++.++.-.. -..+-.+.. ....++++ .-+ ..++..|+..++||+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~---vild~~~~g-~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~ 160 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVS---TLLVIDWQG-AFKFMEMMREHVVSIFIMPPSMEELRRRLCG 160 (231)
T ss_dssp HTTCEEEEEEETTEEEEEECT----THHHHHHHTCE---EEEECCHHH-HHHHHHHSGGGEEEEEEECSCHHHHHHC---
T ss_pred hcCceehhhhhccccCCCCHH----HHHHHHHcCCe---EEEEcCHHH-HHHHHHhcCCCeEEEEEECCcHHHHHHHHHH
Confidence 3333321 1122222222 23334433111 011110000 01113332 111 223456667777889999
Q ss_pred CCHHHHHHHHHHHHHh----c--CCceEEEEcCCHHHHHHhCCEEE
Q 008362 415 LDPASRNNLWNVVKRA----K--QGRAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 415 LD~~~r~~i~~~l~~~----~--~g~tiil~tH~~~e~~~l~dri~ 454 (568)
.|..+...+.+.+++. . +...+++++|+++++..-+++++
T Consensus 161 R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 161 RRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp -----------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 9888777777666532 1 24577778888888776665554
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.21 E-value=4e-11 Score=122.34 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=97.6
Q ss_pred EEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcce
Q 008362 247 ISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSM 326 (568)
Q Consensus 247 ~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~i 326 (568)
.++++++.|++ .. ++++|+ +|++++++|+||+||||+.+.|+|.+.+..|+|.+.+.|+......
T Consensus 78 ~~~~l~~~~~~------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~----- 142 (295)
T 1ls1_A 78 VYEALKEALGG------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR----- 142 (295)
T ss_dssp HHHHHHHHTTS------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-----
T ss_pred HHHHHHHHHCC------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-----
Confidence 34566677753 11 678888 9999999999999999999999999999999999999887532111
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEE
Q 008362 327 GVCPQEDLLWETLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVV 406 (568)
Q Consensus 327 g~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~ll 406 (568)
+.+. ...+..++. ..... ...+-.+.+|.+++.+...+++++
T Consensus 143 ----------------~ql~------------------~~~~~~~l~---~~~~~-~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 143 ----------------EQLR------------------LLGEKVGVP---VLEVM-DGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ----------------HHHH------------------HHHHHHTCC---EEECC-TTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ----------------HHHH------------------HhcccCCeE---EEEcC-CCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0110 012234553 11100 012334557889999888999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHhcCCceEE
Q 008362 407 YMDEP-STGLDPASRNNLWNVVKRAKQGRAII 437 (568)
Q Consensus 407 lLDEP-tsgLD~~~r~~i~~~l~~~~~g~tii 437 (568)
|+||| +.|+|+....++.++.+......+++
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 99999 99999999999888877655444443
No 155
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.20 E-value=8.7e-12 Score=127.81 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=82.6
Q ss_pred eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHh
Q 008362 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYG 349 (568)
Q Consensus 270 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~ 349 (568)
++++.++|++++++|||||||||+++.|+|.+.++.|+|.+.+.|..... ..|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HHHH-----
Confidence 45566789999999999999999999999999999999999887753211 0111
Q ss_pred hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHH---HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 350 RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRL---SVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 350 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl---~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
+..+++..++. . ....|+|+.+++ ++++|+..+|+++|+|||.. +.....+++.
T Consensus 151 -------------L~~~~~~~gl~---~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~e 207 (306)
T 1vma_A 151 -------------LKIWGERVGAT---V----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEE 207 (306)
T ss_dssp -------------HHHHHHHHTCE---E----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHH
T ss_pred -------------HHHHHHHcCCc---E----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHH
Confidence 22344556663 2 235689999999 99999999999999999964 3344555555
Q ss_pred HHH
Q 008362 427 VKR 429 (568)
Q Consensus 427 l~~ 429 (568)
+++
T Consensus 208 L~~ 210 (306)
T 1vma_A 208 LRK 210 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.16 E-value=8.8e-12 Score=134.77 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=49.6
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
..+++|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3589999999999 999999999999999999999999999999999999875
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.03 E-value=8.9e-11 Score=126.83 Aligned_cols=175 Identities=11% Similarity=0.092 Sum_probs=114.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcc-----eEEEcCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTS-----MGVCPQEDLLWE 337 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~-----ig~~~Q~~~l~~ 337 (568)
...|+++...+++|+++.|.|++|+||||++..+++...+..| .|.+.+.+... .+++++ .|+-+|
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~--~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA--QQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH--HHHHHHHHHHHHTCCHH------
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHHHcCCCHH------
Confidence 4689999988999999999999999999999999987766445 56665544322 222211 121111
Q ss_pred CCCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCC
Q 008362 338 TLTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGL 415 (568)
Q Consensus 338 ~lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgL 415 (568)
.+. -..+. .+..+++.++++.++.. ...-.....+|.++.+ +.+++++ .+|+++++|+++...
T Consensus 262 ------~l~----~g~l~-~~~~~~~~~a~~~l~~~--~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 ------NLR----TGKLT-PEDWGKLTMAMGSLSNA--GIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ------HHH----TSCCC-HHHHHHHHHHHHHHHSS--CEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ------HHh----cCCCC-HHHHHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 111 01122 22234455555555433 1333345689999987 4566665 789999999999877
Q ss_pred CH--------HHHHHHHHHHHHh-cC-CceEEEEcC---------C--HH--------HHHHhCCEEEEEECCEE
Q 008362 416 DP--------ASRNNLWNVVKRA-KQ-GRAIILTTH---------S--ME--------EAEALCDRLGIFVDGSL 461 (568)
Q Consensus 416 D~--------~~r~~i~~~l~~~-~~-g~tiil~tH---------~--~~--------e~~~l~dri~il~~G~l 461 (568)
++ ....++.+.|+.+ ++ |.+||+++| + +. .++..||.|++|..++.
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 43 2234555566664 33 899999999 2 22 57889999999998765
No 158
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.03 E-value=2.9e-10 Score=118.59 Aligned_cols=144 Identities=17% Similarity=0.247 Sum_probs=84.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceE-EEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhh
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGT-AYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRL 351 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~-i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l 351 (568)
.+++|+++.|.||||+|||||...++.......|. ++++.... .... ..+++|+-+|+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~~~-~a~~lG~~~~~------------------- 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LDPE-YAKKLGVDTDS------------------- 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH-HHHHTTCCGGG-------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cCHH-HHHHcCCCHHH-------------------
Confidence 68899999999999999999987777544333333 33333211 0100 01111111110
Q ss_pred cCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcC--CCCEEEEeCCCCCC----------CH--
Q 008362 352 KNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIG--NPKVVYMDEPSTGL----------DP-- 417 (568)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~--~p~lllLDEPtsgL----------D~-- 417 (568)
+-+ .. ..+. .+-+.++++++. +|+++++|||++.+ |+
T Consensus 116 ------------------l~i------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 116 ------------------LLV------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp ------------------CEE------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred ------------------eEE------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 001 00 1122 234557777764 49999999999998 33
Q ss_pred -HHHHHHHHHHHH----hc-CCceEEEEcCCHHH----------------HHHhCCEEEEEECCEEEeecC
Q 008362 418 -ASRNNLWNVVKR----AK-QGRAIILTTHSMEE----------------AEALCDRLGIFVDGSLQCIGN 466 (568)
Q Consensus 418 -~~r~~i~~~l~~----~~-~g~tiil~tH~~~e----------------~~~l~dri~il~~G~l~~~g~ 466 (568)
...+.+.+.+++ ++ .|.|||+++|..+. ++.+||.++.++.++....|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 222344444443 23 48999999996542 567899999998887665554
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.02 E-value=6.8e-12 Score=136.58 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=110.3
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCC-CCCCCCCHHHH
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQED-LLWETLTGREH 344 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~-~l~~~lTv~e~ 344 (568)
.+++++.++..+.+.|++||||||+++.|.+ +.+++.|++.+.+.|.... .... .. +|.-- .... ...+-
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~-~~---lPhl~~~Vvt--d~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVY-EG---IPHLLTEVVT--DMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGG-TT---CTTBSSSCBC--SHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhh-cc---CCcccceeec--CHHHH
Confidence 4678888999999999999999999999876 6677889998888886531 1111 11 11100 0111 12222
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCccc---ccCCCCChhHHHHH----------HHHHHHcCCCC-EEEEeC
Q 008362 345 LLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVAD---KQAGKYSGGMKRRL----------SVAISLIGNPK-VVYMDE 410 (568)
Q Consensus 345 l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~---~~~~~LSgG~kqrl----------~la~Al~~~p~-lllLDE 410 (568)
...... ..++.+++. ++++..|+.+ ..+ +....+|+||+|+. .+|+++...|. ++++||
T Consensus 233 ~~~L~~----~~~EmerR~-~ll~~~Gv~~--i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE 305 (512)
T 2ius_A 233 ANALRW----CVNEMERRY-KLMSALGVRN--LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE 305 (512)
T ss_dssp HHHHHH----HHHHHHHHH-HHHHHTTCSS--HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEET
T ss_pred HHHHHH----HHHHHHHHH-HHHHHcCCcc--HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeC
Confidence 221111 124555554 6788888752 322 22346889988753 35566778898 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cC-CceEEEEcCCHH-------HHHHhCCEEEEE
Q 008362 411 PSTGLDPASRNNLWNVVKRA----KQ-GRAIILTTHSME-------EAEALCDRLGIF 456 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~----~~-g~tiil~tH~~~-------e~~~l~dri~il 456 (568)
+++-+|.. ...+.+.+.++ +. |.++|++||.++ ....+.+||++-
T Consensus 306 ~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 306 FADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred HHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 99988843 34455555432 32 889999999987 456677887653
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.99 E-value=7e-13 Score=131.69 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=97.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceEEEcCCC-CCCCCCCH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMGVCPQED-LLWETLTG 341 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~-~l~~~lTv 341 (568)
..+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++.. .....++.+++++|.. ...+.+++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999 89999999999999999999875 7899999876532 1112234567778764 34566777
Q ss_pred HHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC----
Q 008362 342 REHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST---- 413 (568)
Q Consensus 342 ~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts---- 413 (568)
.|++...+..++. ..++..+.+.+++ ..|||||+||+.+++|+..+|++ +|++.-
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~ll---------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~r 176 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQLL---------------VEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGR 176 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHHH---------------HHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTS
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHHH---------------HHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCc
Confidence 7777544332211 1122222233322 35789999999999999999987 676542
Q ss_pred --------CCCHHHHHHHHHHH
Q 008362 414 --------GLDPASRNNLWNVV 427 (568)
Q Consensus 414 --------gLD~~~r~~i~~~l 427 (568)
--|...|+++++..
T Consensus 177 f~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEeeCCcCHHHHHHHHHHH
Confidence 23666777766543
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.99 E-value=1.1e-11 Score=121.59 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc------
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD------ 318 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~------ 318 (568)
.|+++|+.+.|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~-------~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (227)
T 1qhl_A 9 SLTLINWNGFFA-------R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRD 74 (227)
T ss_dssp EEEEEEETTEEE-------E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------------
T ss_pred EEEEEeeecccC-------C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccc
Confidence 578888876553 1 566666 89999999999999999999999999999999999887321
Q ss_pred ---HHHhhcceEEEcCC
Q 008362 319 ---MDRIYTSMGVCPQE 332 (568)
Q Consensus 319 ---~~~~r~~ig~~~Q~ 332 (568)
....+..++|++|.
T Consensus 75 ~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 75 KGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp --CGGGBCSSEEEEEEE
T ss_pred cchhhHhhcCcEEEEEe
Confidence 11245789999984
No 162
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=1.1e-11 Score=138.77 Aligned_cols=165 Identities=14% Similarity=0.100 Sum_probs=107.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCc-eEEEECCeeCCCcHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTS-GTAYVQGLDIRTDMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~-G~i~i~G~~i~~~~~~~r~~ig 327 (568)
++++..|| ...+++++++.+.+|+.++|+||||+|||||+++|+|+.++.. |.+.+++.+... ....++
T Consensus 38 ~~l~~i~G------~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~ 107 (604)
T 3k1j_A 38 KLIDQVIG------QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIK 107 (604)
T ss_dssp SHHHHCCS------CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEE
T ss_pred cccceEEC------chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEE
Confidence 34444565 3579999999999999999999999999999999999999887 888888866532 234588
Q ss_pred EEcCCC----------------------CCCCCCCHHHHHHHHhh-hcCCCc-hhHHHHHHHHHHHcCCCCCCcccccCC
Q 008362 328 VCPQED----------------------LLWETLTGREHLLFYGR-LKNLKG-PALTQAVEESLKSVNLFHGGVADKQAG 383 (568)
Q Consensus 328 ~~~Q~~----------------------~l~~~lTv~e~l~~~~~-l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~ 383 (568)
+|||.. ..+..+++.+|+..... ..+.+. .+......++ +|.. +......+
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L---~G~~--~~~~~~~g 182 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGAL---LGDV--RHDPFQSG 182 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHH---HCEE--CCCCC---
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhc---CceE--EechhhcC
Confidence 888753 11112222222211000 000000 0000011222 2321 12233446
Q ss_pred CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 384 KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 384 ~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
.+|+|++|++..++....++.+|+|||... |+|..+..+.+.|.+
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 799999999999999999999999999988 899999999998875
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.97 E-value=4.5e-13 Score=135.17 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=91.1
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig 327 (568)
+++.+.|+ ...+++++++++++| ++|+||||+|||||+++|+|... .|.+.++|.++... ....++.++
T Consensus 53 ~~l~~~~~------~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 122 (278)
T 1iy2_A 53 KEIVEFLK------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 122 (278)
T ss_dssp HHHHHHHH------CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHH
T ss_pred HHHHHHHH------CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHH
Confidence 44555564 246899999999999 89999999999999999999885 79999998775321 122334577
Q ss_pred EEcCCCC-CCCCCCHHHHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCC
Q 008362 328 VCPQEDL-LWETLTGREHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGN 402 (568)
Q Consensus 328 ~~~Q~~~-l~~~lTv~e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~ 402 (568)
+++|... ..+.+++.|++...+..++. ..++..+.+.++ ..+|||||+||+.+++|+..+
T Consensus 123 ~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l---------------l~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 123 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL---------------LVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp HHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH---------------HHHHTTCCTTCCEEEEEEESC
T ss_pred HHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH---------------HHHHhCCCCCCCEEEEEecCC
Confidence 7888643 55667788888544322211 111222222222 235889999999999999999
Q ss_pred CCE
Q 008362 403 PKV 405 (568)
Q Consensus 403 p~l 405 (568)
|++
T Consensus 188 p~~ 190 (278)
T 1iy2_A 188 PDI 190 (278)
T ss_dssp TTS
T ss_pred chh
Confidence 976
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.96 E-value=2.8e-11 Score=114.79 Aligned_cols=134 Identities=11% Similarity=0.141 Sum_probs=75.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC-----------CceEEEECCeeCCC---cHHHhhcceEEEcCCC----C---CCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT-----------TSGTAYVQGLDIRT---DMDRIYTSMGVCPQED----L---LWE 337 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p-----------~~G~i~i~G~~i~~---~~~~~r~~ig~~~Q~~----~---l~~ 337 (568)
.++|+|+||||||||++.++|...| ++|++.++|+++.. +....++..++++|.. . .++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6799999999999999999998765 58999999976531 1111112222332210 0 011
Q ss_pred CC--CHHHHHHHHh-hhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 008362 338 TL--TGREHLLFYG-RLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG 414 (568)
Q Consensus 338 ~l--Tv~e~l~~~~-~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsg 414 (568)
.. ...+++..+. .++..... ...+..++.++++ ..-.+++...|++++.+|+++++| ||+
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl-------------~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDL-------------RHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGG-------------GGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccc-------------ccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 0112221110 00000000 0000001111122 111123467899999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q 008362 415 LDPASRNNLWNVVKR 429 (568)
Q Consensus 415 LD~~~r~~i~~~l~~ 429 (568)
+|+.+.+++++.|.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999998865
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.83 E-value=1.2e-11 Score=130.11 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=90.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC-CCCCCCHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL-LWETLTGR 342 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~-l~~~lTv~ 342 (568)
..+++++++++++|++++|.||||||||||+++|+|. .+|++...+ ... +..+..+|++||... ++++.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~--~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL--DRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT--TTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc--hhHHHHHHHhcchhHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 467776511 111 112234778888764 44444433
Q ss_pred HHHHHHhhhcCCCc-hh--HHHHHHHHHHH---cCCC-----------CCCcccccCCCCChhHHHHHHHHHHHcCCCCE
Q 008362 343 EHLLFYGRLKNLKG-PA--LTQAVEESLKS---VNLF-----------HGGVADKQAGKYSGGMKRRLSVAISLIGNPKV 405 (568)
Q Consensus 343 e~l~~~~~l~~~~~-~~--~~~~~~~~l~~---~~L~-----------~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~l 405 (568)
.++ .++... .. ....+...++- +.+. .....+.....+++|++||+..+++++..|++
T Consensus 229 ~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 229 GGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 221 111111 00 11223333430 0011 01234567778999999999999889999999
Q ss_pred EE-EeCCCC
Q 008362 406 VY-MDEPST 413 (568)
Q Consensus 406 ll-LDEPts 413 (568)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 88 999987
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.78 E-value=9.6e-11 Score=111.48 Aligned_cols=35 Identities=9% Similarity=0.252 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 393 LSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 393 l~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
...|++++.+|++.++| ||++|+...+++++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 35688999999999999 999999999999998865
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.75 E-value=5.6e-10 Score=106.79 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=45.3
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCC
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLW 336 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~ 336 (568)
.+.+-.++-++|++++|+|||||||||++++|+|.+ |.+.++|.++.......+...|+++|+...+
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccc
Confidence 333334667789999999999999999999999976 8999999887543322333568888864433
No 168
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.71 E-value=1.5e-09 Score=113.82 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH---H
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE---H 344 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~-----------p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e---~ 344 (568)
+++|+|+||||||||++.|+|... |+.|++.++|.++. +....|++.|.+. -.+.. .
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~-----l~DT~G~i~~lp~----~lve~f~~t 251 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM-----LVDTVGFIRGIPP----QIVDAFFVT 251 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE-----EEECCCBCSSCCG----GGHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE-----EEeCCCchhcCCH----HHHHHHHHH
Confidence 489999999999999999999876 67899999986642 1123455444221 11111 1
Q ss_pred HHHHhh------hcCCCc-----hhHHHHHHHHHHHcCCCCCCcc----cccCCCCChhHHHHHHHH----HHH-cCCCC
Q 008362 345 LLFYGR------LKNLKG-----PALTQAVEESLKSVNLFHGGVA----DKQAGKYSGGMKRRLSVA----ISL-IGNPK 404 (568)
Q Consensus 345 l~~~~~------l~~~~~-----~~~~~~~~~~l~~~~L~~~~~~----~~~~~~LSgG~kqrl~la----~Al-~~~p~ 404 (568)
+..... ....+. .+..+.+.+.++.+++.+ .. ..++..+|+|+++|+..+ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 111100 001111 112233566777777642 22 445677898988888877 666 44555
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH
Q 008362 405 VVYMDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 405 lllLDEPtsgLD~~~r~~i~~~l~~ 429 (568)
+ +|+|++|......+++.|.+
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHH
Confidence 4 89999999999999999876
No 169
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.65 E-value=3.4e-09 Score=101.43 Aligned_cols=136 Identities=18% Similarity=0.242 Sum_probs=86.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCchh
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKGPA 358 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~~~ 358 (568)
++||+|+|||||||+.++|+++ |...+++-+ +.+.+. + + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------~~~~~~---~-----~---------------~--~-- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------VAREVV---A-----K---------------D--S-- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------HHHHTT---C-----S---------------S--C--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------HHHHHc---c-----C---------------C--h--
Confidence 6899999999999999999983 554554321 111110 0 0 0 0
Q ss_pred HHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEE
Q 008362 359 LTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIIL 438 (568)
Q Consensus 359 ~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil 438 (568)
..+.++.+.+|.. .. .+.|+.+|..++.....+|+..-.+ .+.++|..++.+++.+.... +.++|+
T Consensus 45 --~~~~~i~~~~g~~---~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~-~~~vv~ 110 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQ---IL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT-APYTLF 110 (206)
T ss_dssp --HHHHHHHHHHCTT---CC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC-SSEEEE
T ss_pred --HHHHHHHHHhCHH---Hh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC-CCEEEE
Confidence 1234445555543 11 3678888999988888887644333 45678988888888776543 558999
Q ss_pred EcCCHHHH--HHhCCEEEEEECCEEEeecCHHHHHHhc
Q 008362 439 TTHSMEEA--EALCDRLGIFVDGSLQCIGNPKELKARY 474 (568)
Q Consensus 439 ~tH~~~e~--~~l~dri~il~~G~l~~~g~~~~l~~~~ 474 (568)
.+|.+.|. ...||++++++ .+++...++.
T Consensus 111 ~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl 141 (206)
T 1jjv_A 111 VVPLLIENKLTALCDRILVVD-------VSPQTQLARS 141 (206)
T ss_dssp ECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHH
T ss_pred EechhhhcCcHhhCCEEEEEE-------CCHHHHHHHH
Confidence 99999887 67899988874 5666666655
No 170
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.58 E-value=2.1e-09 Score=118.35 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEE-ECCeeCCC-----------cHHHhhcceEEEcCCCCCCCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAY-VQGLDIRT-----------DMDRIYTSMGVCPQEDLLWETL 339 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~-i~G~~i~~-----------~~~~~r~~ig~~~Q~~~l~~~l 339 (568)
.+++|++++|+|+|||||||++++|+|.+.|++| ++. ++|.++.. +....++.+++++|+ +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~------l 438 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE------I 438 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH------H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH------H
Confidence 5789999999999999999999999999999987 785 88866521 011123446666664 1
Q ss_pred CHHHHHHHHhhhcCCCchhHHHHHHHHHHHcC
Q 008362 340 TGREHLLFYGRLKNLKGPALTQAVEESLKSVN 371 (568)
Q Consensus 340 Tv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~ 371 (568)
+..+++.+.. .+.+....++++.++++.+|
T Consensus 439 ~~~~~ivi~~--~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICA--PIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEEC--CCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEe--cCCccHHHHHHHHHHHHHcC
Confidence 2222222211 11123455667788888776
No 171
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.56 E-value=7.1e-09 Score=103.00 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=52.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh---CCCCCCceEEE--------ECCeeCCC--cHHHhhcceEEEcCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMI---GITRTTSGTAY--------VQGLDIRT--DMDRIYTSMGVCPQED 333 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~---Gl~~p~~G~i~--------i~G~~i~~--~~~~~r~~ig~~~Q~~ 333 (568)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++.. ....+++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 89988843 3556788899999854
No 172
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.56 E-value=1.3e-08 Score=104.73 Aligned_cols=78 Identities=13% Similarity=0.053 Sum_probs=60.6
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcH-----HHh-----hcceEEE-cCCCCC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDM-----DRI-----YTSMGVC-PQEDLL 335 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~-----~~~-----r~~ig~~-~Q~~~l 335 (568)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.... ..+ +.+++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 46888999999999999999999999999999999999999999999885432 223 5678999 676544
Q ss_pred CCCCCHHHH
Q 008362 336 WETLTGREH 344 (568)
Q Consensus 336 ~~~lTv~e~ 344 (568)
.+..++.++
T Consensus 175 ~p~~~~~~~ 183 (320)
T 1zu4_A 175 DPASVVFDA 183 (320)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 443333333
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.54 E-value=5.6e-08 Score=111.53 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=61.5
Q ss_pred cccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhc-CCceEEEE-cCCHHHHHHhCCE
Q 008362 379 DKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNVVKRAK-QGRAIILT-THSMEEAEALCDR 452 (568)
Q Consensus 379 ~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~l~~~~-~g~tiil~-tH~~~e~~~l~dr 452 (568)
+..+.-+|.|+.+|..++.+++.+++++|+|||.. ++|......+++.+.... +.++|++| ||+.+.+..++++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 44566789999999999999999999999999996 999888777777666554 46788884 9999888887764
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.53 E-value=8.2e-08 Score=100.10 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=51.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE-EECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA-YVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLL 346 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i-~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~ 346 (568)
.+++|+++.|.||||+|||||+..+++...+..|.+ ++++....... ..+++|+.+|+..+....++.+.+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~ 129 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQALE 129 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHHH
Confidence 588999999999999999999999999887777765 67665443221 3355777777654444445555443
No 175
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.53 E-value=3.1e-08 Score=92.64 Aligned_cols=137 Identities=13% Similarity=0.135 Sum_probs=84.8
Q ss_pred ee--eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe--eC-CCcHH----HhhcceEEEcCCCC--
Q 008362 266 AV--NGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL--DI-RTDMD----RIYTSMGVCPQEDL-- 334 (568)
Q Consensus 266 al--~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~--~i-~~~~~----~~r~~ig~~~Q~~~-- 334 (568)
.+ +++++++.+| +++|+|||||||||++++|.+++.++.|...-.+. ++ ..... ..+..|.+++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 55 7889999999 99999999999999999999998887765432221 11 11100 13356889998753
Q ss_pred CCC---CCCHHHHHHHH----hhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEE
Q 008362 335 LWE---TLTGREHLLFY----GRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVY 407 (568)
Q Consensus 335 l~~---~lTv~e~l~~~----~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lll 407 (568)
+.+ .+++...+.-. ..+.+. ....+++.++++.+++..+ ...-++.|+.+++.
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~--~~~~~~~~~~l~~~~l~~~-----~~~~~~qg~~~~l~------------- 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGR--RATRSEILDILTAAMISPD-----GYNIVLQGDITKFI------------- 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTE--EECHHHHHHHHHHTTCCTT-----CTTEECTTCTTHHH-------------
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCe--EcCHHHHHHHHHHcCCCCC-----CCEEEEcccHHHHH-------------
Confidence 111 12322211000 011111 1224568889999999641 12357888887764
Q ss_pred EeCCCCCCCHHHHHHHHHHHHH
Q 008362 408 MDEPSTGLDPASRNNLWNVVKR 429 (568)
Q Consensus 408 LDEPtsgLD~~~r~~i~~~l~~ 429 (568)
-++|..|+++++.+..
T Consensus 153 ------~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 153 ------KMSPLERRLLIDDISG 168 (182)
T ss_dssp ------HSCHHHHHHHHHHHHT
T ss_pred ------hCCHHHHHHHHHHHHC
Confidence 2467888888877643
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.52 E-value=7.3e-08 Score=100.61 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=84.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCCc
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLKG 356 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~~ 356 (568)
.-.++++|+||+|||||++.|+|.. +. +.+.+..+. ...++.+++... .
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~----~~~~~~~~~~~~---------------~------ 215 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTR----GINVGQFEDGYF---------------R------ 215 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSS----CEEEEEEEETTE---------------E------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeee----ceeEEEEEecCc---------------e------
Confidence 4578999999999999999999965 21 122211110 112344433211 0
Q ss_pred hhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCce
Q 008362 357 PALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD-EPSTGLDPASRNNLWNVVKRAKQGRA 435 (568)
Q Consensus 357 ~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD-EPtsgLD~~~r~~i~~~l~~~~~g~t 435 (568)
+..++.. ...+.+...+|+|++|++. +.+...++-++++| +|.+|+|......+++.+.+...++.
T Consensus 216 ----------~~l~Dt~--G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p 282 (357)
T 2e87_A 216 ----------YQIIDTP--GLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP 282 (357)
T ss_dssp ----------EEEEECT--TTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC
T ss_pred ----------EEEEeCC--CccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC
Confidence 1112221 1334567789999998877 66666788899999 99999999998888888876544788
Q ss_pred EEEEc--CCHHHH
Q 008362 436 IILTT--HSMEEA 446 (568)
Q Consensus 436 iil~t--H~~~e~ 446 (568)
+|++. ||+...
T Consensus 283 iilV~NK~Dl~~~ 295 (357)
T 2e87_A 283 FLVVINKIDVADE 295 (357)
T ss_dssp EEEEECCTTTCCH
T ss_pred EEEEEECcccCCh
Confidence 88877 887543
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.51 E-value=3.7e-08 Score=93.68 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G 306 (568)
+++++|++++|+|||||||||++++|+|...|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977666
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.49 E-value=2.6e-08 Score=93.99 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
|++++|+||||||||||+++|+|+++++.|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFS 32 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEE
Confidence 67899999999999999999999998655543
No 179
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.46 E-value=2e-09 Score=117.13 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=96.1
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCC-CCCCCCHH
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETLTGR 342 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~-l~~~lTv~ 342 (568)
.+++++++.+++| +.|.||||+|||||+++|+|... .|.+.++|.++... .....++++.++|... ..+.+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4788899999999 89999999999999999999874 78999999876432 1122344666777643 34555566
Q ss_pred HHHHHHhhhcCC----CchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCC----
Q 008362 343 EHLLFYGRLKNL----KGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTG---- 414 (568)
Q Consensus 343 e~l~~~~~l~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsg---- 414 (568)
|++.....-++. ..++..+.+.+++. .||||++|+..+++|...+|++ |||+..-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLlr~gRf 192 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRF 192 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTSSTTSS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHH---------------HhcccccCccEEEEEecCChhh--cCccccccccc
Confidence 666433222111 12233333444433 3678888888999999999987 8988643
Q ss_pred --------CCHHHHHHHHHH
Q 008362 415 --------LDPASRNNLWNV 426 (568)
Q Consensus 415 --------LD~~~r~~i~~~ 426 (568)
-|...|+++++.
T Consensus 193 dr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 193 DRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp CCEEECCCCCHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHH
Confidence 466677776643
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.46 E-value=3.4e-09 Score=101.25 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=46.9
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE--EECCeeCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA--YVQGLDIR 316 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i--~i~G~~i~ 316 (568)
+|+++.++ ...+.++.++..++|++++|+|||||||||+.++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~------~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHEC------SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------C------CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCccccc------ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45666665 3567788889899999999999999999999999999987 77888 88886654
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.44 E-value=1.1e-07 Score=103.02 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHh-----cCCceEEEEcCCHHHHH
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEP----------STGLDPASRNNLWNVVKRA-----KQGRAIILTTHSMEEAE 447 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEP----------tsgLD~~~r~~i~~~l~~~-----~~g~tiil~tH~~~e~~ 447 (568)
|++++|-.+++|....|.+|++||+ +.|.|+..++.+.+++..+ ..+..||.+||..+.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 6778888899999999999999999 4477887777777777654 24678999999987653
No 182
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.44 E-value=1.8e-08 Score=105.00 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=37.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
+++.+++|+|++|||||||++.|+|...|++|+|.+.+.|+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3578999999999999999999999999999999998877643
No 183
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.43 E-value=1.5e-08 Score=100.71 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=36.0
Q ss_pred CeEEEEeE-EEEcCCCCCCCccceeeeeEEEEeC---CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 244 HAIISDNL-RKIYPGRDGNPEKVAVNGLSLALPS---GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 244 ~~i~~~~l-~k~y~~~~~~~~~~al~~isl~i~~---Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++++|+ +|.|++ .+.+|+|+||++.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~-----~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDE-----EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecC-----cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36999999 999932 35799999999999 9999999999999999999999855
No 184
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.42 E-value=9.2e-08 Score=107.97 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=85.3
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC--CceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITRT--TSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREHLLF 347 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p--~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~ 347 (568)
|+++++|..++|+|+||||||||++.|+|...+ ..|+| .+|.++.. ...+.++.+++.+|...+... ++..|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~n--- 77 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVF--- 77 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEE---
Confidence 456788999999999999999999999976654 67888 67766643 344456678887776544332 11111
Q ss_pred HhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCC-CCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 008362 348 YGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAG-KYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNLWNV 426 (568)
Q Consensus 348 ~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~-~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i~~~ 426 (568)
..|.+.. .+ +.......-..+..++++| |+.|+|+..+ .+|+.
T Consensus 78 -----------------------------liDTpG~~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~~~~ 121 (665)
T 2dy1_A 78 -----------------------------LLDAPGYGDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTE-RAWTV 121 (665)
T ss_dssp -----------------------------EEECCCSGGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HHHHH
T ss_pred -----------------------------EEeCCCccch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHH-HHHHH
Confidence 1121110 01 1112222235678899999 9999999876 44444
Q ss_pred HHHhcCCceEEEEcCCHHHH
Q 008362 427 VKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 427 l~~~~~g~tiil~tH~~~e~ 446 (568)
+++ .+.++|++.|.+|..
T Consensus 122 ~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH--TTCCEEEEEECGGGC
T ss_pred HHH--ccCCEEEEecCCchh
Confidence 433 478899999998853
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.38 E-value=4.7e-09 Score=109.72 Aligned_cols=173 Identities=16% Similarity=0.204 Sum_probs=87.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC--CCCCCceEEEECCeeCCCc-HHHhhcceEEEcCCCC-CCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG--ITRTTSGTAYVQGLDIRTD-MDRIYTSMGVCPQEDL-LWETL 339 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G--l~~p~~G~i~i~G~~i~~~-~~~~r~~ig~~~Q~~~-l~~~l 339 (568)
..+|++++++++ .++++|++|||||||++.|+| ++++.+|.++-.+..+... .....+..+..++.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 899999999999999999999 6677778775444333110 0000122333333221 11110
Q ss_pred -CHHHHH-----HHHhhhcCCCchhHHHHH----HHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEe
Q 008362 340 -TGREHL-----LFYGRLKNLKGPALTQAV----EESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMD 409 (568)
Q Consensus 340 -Tv~e~l-----~~~~~l~~~~~~~~~~~~----~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLD 409 (568)
.+.+.+ ...+..++.+.....-.+ ..-+..+++.. -......++.++.++++..++++.+.+|+++++.
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG-~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilv 179 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPG-LTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA 179 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCC-BCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCC-CCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEE
Confidence 111111 111111111110000000 00011112210 0111222456788899999999999999988888
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CC-ceEEEEcC
Q 008362 410 EPSTGLDPASRNNLWNVVKRAK-QG-RAIILTTH 441 (568)
Q Consensus 410 EPtsgLD~~~r~~i~~~l~~~~-~g-~tiil~tH 441 (568)
-..+..|.. .....++++... .| ++|++.|.
T Consensus 180 v~~~~~~~~-~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 180 ISPANQDLA-TSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEETTSCGG-GCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred eecccCCcC-CHHHHHHHHHhcccCCCEEEEEeC
Confidence 433444543 345566666654 34 57777775
No 186
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.27 E-value=3.9e-08 Score=91.37 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
.+|++++|+|+|||||||+.++|++.+ |.+.+++.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 468999999999999999999999865 889999877653
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.27 E-value=2e-06 Score=91.87 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=79.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhcCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLKNLK 355 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~~~~ 355 (568)
++.+++++||||+||||++..|++.+.+..++|.+-+.|+... ...|.+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~---------------------~a~eqL~~~~------ 148 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP---------------------AAYDQLLQLG------ 148 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH---------------------HHHHHHHHHH------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch---------------------hHHHHHHHHH------
Confidence 5789999999999999999999999988888888766654211 1223333322
Q ss_pred chhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHhcC
Q 008362 356 GPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPS-TG--LDPASRNNLWNVVKRAKQ 432 (568)
Q Consensus 356 ~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPt-sg--LD~~~r~~i~~~l~~~~~ 432 (568)
+..++. .... ......-.-.+-+++.+...+++++|+|+|. .+ .|+....++.++.+..+.
T Consensus 149 ------------~~~gv~---~~~~-~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p 212 (433)
T 3kl4_A 149 ------------NQIGVQ---VYGE-PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP 212 (433)
T ss_dssp ------------HTTTCC---EECC-TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC
T ss_pred ------------HhcCCc---eeec-cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC
Confidence 223332 1100 0011111122334566666799999999986 45 888888888887766654
Q ss_pred -CceEEEEcCCH
Q 008362 433 -GRAIILTTHSM 443 (568)
Q Consensus 433 -g~tiil~tH~~ 443 (568)
...+++.+|.-
T Consensus 213 d~vlLVlDa~~g 224 (433)
T 3kl4_A 213 DDVILVIDASIG 224 (433)
T ss_dssp SEEEEEEEGGGG
T ss_pred cceEEEEeCccc
Confidence 45566666543
No 188
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=5.6e-07 Score=93.76 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=39.0
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCceEEEEcCCHHHHHHhC
Q 008362 400 IGNPKVVYMDEPSTGLDPASRNNLWNVVKRAK----QGRAIILTTHSMEEAEALC 450 (568)
Q Consensus 400 ~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~----~g~tiil~tH~~~e~~~l~ 450 (568)
.++|.++++||+... |+.....+.+.+.+.. .+.++|++||+.+..+.+.
T Consensus 123 ~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 466899999999876 9888888888876542 4789999999987555443
No 189
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.12 E-value=6.9e-07 Score=83.71 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCC-CceEEEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRT-TSGTAYV 310 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p-~~G~i~i 310 (568)
+|++++|+||||||||||+++|+|..++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999998864 4566544
No 190
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.11 E-value=1.1e-07 Score=97.01 Aligned_cols=154 Identities=12% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCC---CCCCCCHHHHHHHHhhhc
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDL---LWETLTGREHLLFYGRLK 352 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~---l~~~lTv~e~l~~~~~l~ 352 (568)
++..++|+|++|||||||++.|+|... .+......+. ..+..|++++++. +++ |...+......+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~tT---r~~~~gi~~~~~~~i~~iD--TpG~~~~~~~~l~ 75 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQTT---RHRIVGIHTEGAYQAIYVD--TPGLHMEEKRAIN 75 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSSCC---SSCEEEEEEETTEEEEEES--SSSCCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCCcc---eeeEEEEEEECCeeEEEEE--CcCCCccchhhHH
Confidence 445899999999999999999999632 1211111111 1234677777542 121 1100000000000
Q ss_pred CCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HHHHHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLDPAS-RNNLWNVVKR 429 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgLD~~~-r~~i~~~l~~ 429 (568)
+...+.+...++.+++-- -..+. ..+|+|++ .++.++. +.|.++++ +.+|... +..+.+.+.+
T Consensus 76 ----~~~~~~~~~~l~~~D~vl-~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~ 141 (301)
T 1ega_A 76 ----RLMNKAASSSIGDVELVI-FVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQF 141 (301)
T ss_dssp ----HHHTCCTTSCCCCEEEEE-EEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCEEE-EEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHH
Confidence 000000111122222210 01122 23898886 4555665 78999999 7899876 6777777776
Q ss_pred hcC--C--ceEEEEcCCHHHHHHhCCEEE
Q 008362 430 AKQ--G--RAIILTTHSMEEAEALCDRLG 454 (568)
Q Consensus 430 ~~~--g--~tiil~tH~~~e~~~l~dri~ 454 (568)
+.+ | ..+.+++|+.+.++.++|.+.
T Consensus 142 l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 142 LASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 532 4 467788888888887777653
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.07 E-value=1.1e-06 Score=85.80 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
+.++|++++|.|+|||||||++++|+|. .|+|.+.|++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4468999999999999999999999998 78899998764
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.06 E-value=7e-07 Score=85.22 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
.++|++++|.|+|||||||++++|++.+++..|.+.+.+.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4679999999999999999999999999888999988877653
No 193
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=1.8e-06 Score=82.07 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=24.8
Q ss_pred ccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 263 EKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 263 ~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457999999999999999999999999999999999765
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.7e-08 Score=104.49 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=41.4
Q ss_pred cceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe
Q 008362 264 KVAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313 (568)
Q Consensus 264 ~~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~ 313 (568)
..+++.++..+++|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 4688888888999998 9999999999999999999988776665444433
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.00 E-value=4.3e-06 Score=86.45 Aligned_cols=128 Identities=13% Similarity=0.211 Sum_probs=79.8
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......+. +.|+.= .++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~------------------Vl~fSl------Ems~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG------------------VAVFSL------EMSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE------------------EEEEES------SSCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe------------------EEEEeC------CCCHHH
Confidence 45788877789999999999999999999998877543221122 233221 234433
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
.. .++......+++. +-.-+.||.++++|+..|...+.++++.+.|+|...+| .+
T Consensus 89 l~---------------~Rlls~~~~v~~~-----~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i 143 (338)
T 4a1f_A 89 LA---------------LRALSDLTSINMH-----DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QI 143 (338)
T ss_dssp HH---------------HHHHHHHHCCCHH-----HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HH
T ss_pred HH---------------HHHHHHhhCCCHH-----HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HH
Confidence 22 1222222222221 11124799999999999999999999999999865433 34
Q ss_pred HHHHHHh--cC-CceEEEEc
Q 008362 424 WNVVKRA--KQ-GRAIILTT 440 (568)
Q Consensus 424 ~~~l~~~--~~-g~tiil~t 440 (568)
...++++ .. |..+|++-
T Consensus 144 ~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 144 RLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp HHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEe
Confidence 4444443 23 56677663
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.99 E-value=4.9e-07 Score=92.95 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=45.7
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCc------EEEEEcCCCCcHHHHHHHHhCCCC--CCceEEEECC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGE------CFGMLGPNGAGKTTFISMMIGITR--TTSGTAYVQG 312 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Ge------i~~LlG~NGaGKTTll~~l~Gl~~--p~~G~i~i~G 312 (568)
+.|++.|+ ++.++++++..+.+++ ++||.||||||||||+++|.|++. |++|.+.+-+
T Consensus 64 rll~~~~~------~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 64 RLLSFYVT------ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHhhc------chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 34555565 3678888998888887 999999999999999999999987 4666654433
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.96 E-value=3.4e-06 Score=80.89 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=27.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
++|++++|+|||||||||++++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999887
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.95 E-value=2.8e-06 Score=81.15 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=26.8
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|+...+|++++|+||||||||||++.|.+..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
No 199
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.94 E-value=2.6e-06 Score=88.25 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
++..+.|.||+|+|||||++.+++...+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999876553
No 200
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.90 E-value=7.8e-07 Score=85.90 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC---CCCceEEEE--------CCeeCCC--cHHHhhcceEEEcCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT---RTTSGTAYV--------QGLDIRT--DMDRIYTSMGVCPQED 333 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~---~p~~G~i~i--------~G~~i~~--~~~~~r~~ig~~~Q~~ 333 (568)
+.+++|+||+||||||+.++|++.+ .+++|++.. +|.++.. ....+++.+|+.+|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5789999999999999999999765 788999887 7777643 3345678899998864
No 201
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.88 E-value=2.7e-05 Score=82.88 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=50.0
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
++|++.|++. . ++++++ +|++++++|+||+||||+...|++.+.+..|+|.+.+.|+..
T Consensus 80 ~~L~~~~~~~------~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGGE------A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTSS------C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCCC------c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 4566777631 1 677887 899999999999999999999999999999999999988765
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.86 E-value=1.2e-06 Score=90.97 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=55.6
Q ss_pred EEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCC
Q 008362 246 IISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIR 316 (568)
Q Consensus 246 i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~ 316 (568)
++.+++.+.|+ .+.+++++++.+.+|.+++++|+||||||||++.|+|.+.+..|++.+-+.|+.
T Consensus 31 ie~~~~~~~~~------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQAL------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHH------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhH------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 55566666775 356899999999999999999999999999999999999988899988777664
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.78 E-value=1.2e-05 Score=76.60 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 271 SLALPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 271 sl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
-=++++|++++|.|++||||||+.++|++.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34677899999999999999999999999864
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.77 E-value=1.7e-05 Score=81.47 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=72.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC-CCC------CceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI-TRT------TSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHL 345 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl-~~p------~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l 345 (568)
.+++|+++.|.||+|+||||+...++.. ..| ..+.++++.... + ...+-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~-------------------~----~~~~l~ 159 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT-------------------F----RWERIE 159 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-------------------C----CHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC-------------------C----CHHHHH
Confidence 6899999999999999999999888763 334 233344443321 0 111111
Q ss_pred HHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChh-HHHHHHHHHHHc---CCCCEEEEeCCCCCCCH----
Q 008362 346 LFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGG-MKRRLSVAISLI---GNPKVVYMDEPSTGLDP---- 417 (568)
Q Consensus 346 ~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG-~kqrl~la~Al~---~~p~lllLDEPtsgLD~---- 417 (568)
.. +.-.+...+ ++++.+-+ .+ ..+.. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 160 ~~-~~~~g~~~~-------~~~~~l~~-----~~----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~ 222 (324)
T 2z43_A 160 NM-AKALGLDID-------NVMNNIYY-----IR----AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPG 222 (324)
T ss_dssp HH-HHHTTCCHH-------HHHHTEEE-----EE----CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCT
T ss_pred HH-HHHhCCCHH-------HHhccEEE-----Ee----CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcC
Confidence 11 111122211 12222111 11 12222 235566777777 78999999999876533
Q ss_pred ----HHH-HHHHHH---HHHh-c-CCceEEEEcCCHHHH
Q 008362 418 ----ASR-NNLWNV---VKRA-K-QGRAIILTTHSMEEA 446 (568)
Q Consensus 418 ----~~r-~~i~~~---l~~~-~-~g~tiil~tH~~~e~ 446 (568)
..| +.+.+. |+++ + .|.+||+++|-....
T Consensus 223 ~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 223 RENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 222 123333 4443 2 389999999976543
No 205
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.75 E-value=3.6e-06 Score=90.31 Aligned_cols=42 Identities=10% Similarity=0.315 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCCCCCCH-HHHHHHHHHHHHh-cCCceEEEEcCC
Q 008362 401 GNPKVVYMDEPSTGLDP-ASRNNLWNVVKRA-KQGRAIILTTHS 442 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~-~~r~~i~~~l~~~-~~g~tiil~tH~ 442 (568)
.+|++|++||+..-.+. ..++.+...+... ..|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 6788888988875 568899999997
No 206
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.75 E-value=2.9e-06 Score=93.53 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=48.7
Q ss_pred EeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC-cHHHhhcceE
Q 008362 249 DNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT-DMDRIYTSMG 327 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~-~~~~~r~~ig 327 (568)
+++.+.|+ +..+++++++++ +|++++|+||||+|||||+++|++...+..|++.+.|..... .....++.+|
T Consensus 87 ~~vk~~i~------~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 87 EKVKERIL------EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HHHHHHHH------HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred HHHHHHHH------HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 45555564 356788888888 899999999999999999999999999999999888843321 1112234456
Q ss_pred EEcC
Q 008362 328 VCPQ 331 (568)
Q Consensus 328 ~~~Q 331 (568)
+.+|
T Consensus 160 ~~~~ 163 (543)
T 3m6a_A 160 AMPG 163 (543)
T ss_dssp ----
T ss_pred cCch
Confidence 5554
No 207
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.68 E-value=0.0002 Score=69.67 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCceEEEEcC
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAK---QGRAIILTTH 441 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~---~g~tiil~tH 441 (568)
.+|+++|+..+.+.++...++.+..+.+... ...++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4789999999988999877777776665432 2358888888
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.68 E-value=0.0001 Score=73.94 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhc-----CCceEEEEcCCHH
Q 008362 387 GGMKRRLSVAISLIGNPKVVYMDEPSTGLDPA----------SRNNLWNVVKRAK-----QGRAIILTTHSME 444 (568)
Q Consensus 387 gG~kqrl~la~Al~~~p~lllLDEPtsgLD~~----------~r~~i~~~l~~~~-----~g~tiil~tH~~~ 444 (568)
++++.|..++.|...+|.+|++||+.+-.+.. ....+...+.... .+..||.+|++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 56777777888888899999999997765532 2233444444321 2356788888754
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=0.00016 Score=73.36 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=48.8
Q ss_pred EeEEEEcCCCCCCCccceeee-eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCC
Q 008362 249 DNLRKIYPGRDGNPEKVAVNG-LSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRT 317 (568)
Q Consensus 249 ~~l~k~y~~~~~~~~~~al~~-isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~ 317 (568)
++|.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|++.+.+.|+..
T Consensus 78 ~~l~~~~~~~-----~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 78 DELSNLFGGD-----K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHTTCS-----C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHhccc-----c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4566667631 1 45 777776 99999999999999999999999999888999988877654
No 210
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.62 E-value=4.3e-05 Score=79.16 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+++|+++.|.||+|+||||+...++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999999988874
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.60 E-value=3e-05 Score=82.99 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC------------CCceEEEECCeeCCC-cHHHhhcceEEEcCCCCCCCCCCHHHH
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDIRT-DMDRIYTSMGVCPQEDLLWETLTGREH 344 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~------------p~~G~i~i~G~~i~~-~~~~~r~~ig~~~Q~~~l~~~lTv~e~ 344 (568)
-.++|+|+||+|||||++.|+|... |.+|.+.++|+++.- +....++..++.+|....+..++..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3789999999999999999999864 678999999986521 122233444555565555555555565
Q ss_pred HHH
Q 008362 345 LLF 347 (568)
Q Consensus 345 l~~ 347 (568)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 212
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.55 E-value=2.6e-05 Score=71.71 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.|++++|+|||||||||+.++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.54 E-value=4.3e-05 Score=69.45 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.2
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666655 999999999999999999873
No 214
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.49 E-value=1.8e-05 Score=73.54 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=32.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCeeC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLDI 315 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~i 315 (568)
++|++++|.|++||||||+.++|++.+++ .| .+.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 566665433
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.45 E-value=5.4e-05 Score=87.22 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
+.+++|+.+.|.||||+|||||+++|+|...+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46789999999999999999999999998754
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.44 E-value=0.00024 Score=71.93 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.++..+.|.||+|+||||+.+++++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45678899999999999999999999865
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.41 E-value=0.00039 Score=72.36 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.2
Q ss_pred ceeeeeE--EEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..||.+- =.+++|+++.|.|++|+|||||...++..
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455542 14889999999999999999998777653
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.41 E-value=0.00013 Score=73.48 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
...+.|.||+|+||||+.++|++...++.|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 36899999999999999999999887766643
No 219
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.35 E-value=1.9e-05 Score=78.77 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHh-c-CCceEEEEcCCHHHHHHhCCEEEE
Q 008362 411 PSTGLDPASRNNLWNVVKRA-K-QGRAIILTTHSMEEAEALCDRLGI 455 (568)
Q Consensus 411 PtsgLD~~~r~~i~~~l~~~-~-~g~tiil~tH~~~e~~~l~dri~i 455 (568)
|||+.+.....++++.+.+. . +..+..+.+|..++++..++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999998764 3 455667888999999998888643
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.32 E-value=6.9e-05 Score=73.06 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred eeeeeEEEEe---CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008362 266 AVNGLSLALP---SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQ 311 (568)
Q Consensus 266 al~~isl~i~---~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~ 311 (568)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4677777776 8999999999999999999999998887 6666543
No 221
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.30 E-value=0.00016 Score=67.67 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=20.3
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++++++..++. .++++|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4889999998887 568999999999999999997
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.28 E-value=3.3e-05 Score=73.91 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=36.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce--EEEECCee
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG--TAYVQGLD 314 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G--~i~i~G~~ 314 (568)
.+++|.++.|.|++||||||+.+.|++.+.|+.| .+.++|.+
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3557899999999999999999999999888888 88887543
No 223
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.28 E-value=5.4e-05 Score=71.46 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..+++++|+..+++. ++++|++|+|||||++.+++
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 458899999988875 68999999999999999987
No 224
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.25 E-value=0.00021 Score=72.97 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=80.1
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHH
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGRE 343 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e 343 (568)
...|+++.-.+++|+++.|.|++|+||||+...++.-.-- .| ..+.|+.=+ ++..+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----------------~~vl~~slE------~s~~~ 110 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----------------DVVNLHSLE------MGKKE 110 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----------------CEEEEEESS------SCHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----------------CeEEEEECC------CCHHH
Confidence 4578888877999999999999999999998877642110 11 123333221 34444
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHH
Q 008362 344 HLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPSTGLDPASRNNL 423 (568)
Q Consensus 344 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPtsgLD~~~r~~i 423 (568)
... ++......+++. ...+.. ..||.++++|+.-|...+.++++.+.|+|... + ..+
T Consensus 111 l~~---------------R~~~~~~~i~~~--~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i 167 (315)
T 3bh0_A 111 NIK---------------RLIVTAGSINAQ--KIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYI 167 (315)
T ss_dssp HHH---------------HHHHHHTTCCHH--HHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHH
T ss_pred HHH---------------HHHHHHcCCCHH--HHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHH
Confidence 322 111111112211 011111 23899999999999999989999999998643 2 334
Q ss_pred HHHHHHh-c-CCce--EEEEcCC
Q 008362 424 WNVVKRA-K-QGRA--IILTTHS 442 (568)
Q Consensus 424 ~~~l~~~-~-~g~t--iil~tH~ 442 (568)
.+.++++ + .|.. +|++-|-
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHhcCCCCeEEEEeCc
Confidence 4445443 2 3555 7777653
No 225
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.23 E-value=0.00023 Score=65.43 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|..++|+|++|+|||||++.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999965
No 226
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.21 E-value=4.1e-05 Score=80.03 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=46.5
Q ss_pred eEEEEeEEEEcCCCCCCCccceee--------------eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVN--------------GLSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~--------------~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.++||+..|+. ++..++ |+++.+.+||..+|+||+|+|||||+++|++..
T Consensus 133 ri~Fe~ltp~yP~-----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN-----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC-----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC-----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4778999999985 356888 899999999999999999999999999998865
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.20 E-value=3.5e-05 Score=80.41 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred eEEEEeEEEEcCCCCCCCccceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCe
Q 008362 245 AIISDNLRKIYPGRDGNPEKVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGL 313 (568)
Q Consensus 245 ~i~~~~l~k~y~~~~~~~~~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~ 313 (568)
.+.+.||++.|++ +.+.++++|+| +++|+||+|||||++.|.|...+..|.+...+.
T Consensus 17 ~v~~~~l~~~~~~------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 17 YVGFANLPNQVHR------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ----CCHHHHHHT------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred eEEeccchHHhCC------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4778899888863 56889999988 899999999999999999987666665544443
No 228
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=3.6e-06 Score=86.51 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
.+++++++|| ...+++..+..+.+.+.+...+..+|++|++.+
T Consensus 132 ~~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 132 PPYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp CSCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 3678999999 788999999999998887655555666766654
No 229
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.17 E-value=0.00011 Score=71.47 Aligned_cols=147 Identities=15% Similarity=0.061 Sum_probs=73.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeCCCcHHHhhcceEEEcCCCCCCCCCCHHHHHHHHhhhc
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDIRTDMDRIYTSMGVCPQEDLLWETLTGREHLLFYGRLK 352 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i~~~~~~~r~~ig~~~Q~~~l~~~lTv~e~l~~~~~l~ 352 (568)
.+.+|+.+.+.||+||||||++..+........|. ...++++.+.+......++.+++.-..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---------------~~~~~~l~~~p~~~la~q~~~~~~~~~--- 133 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---------------AAECNIVVTQPRRISAVSVAERVAFER--- 133 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---------------GGGCEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---------------CCceEEEEeccchHHHHHHHHHHHHHh---
Confidence 34679999999999999999988764311111110 123456666554333334444443211
Q ss_pred CCCchhHHHHHHHHHHHcCCC--CCCc---ccccCCCCChhHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 008362 353 NLKGPALTQAVEESLKSVNLF--HGGV---ADKQAGKYSGGMKRRLSVAISLIGNPKVVYMDEPST-GLDPASRNNLWNV 426 (568)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~L~--~~~~---~~~~~~~LSgG~kqrl~la~Al~~~p~lllLDEPts-gLD~~~r~~i~~~ 426 (568)
+..- -..+|.. .... .+..+--.+.|...+. ..+.+.+-+++++||.-. ++|........+.
T Consensus 134 ~~~~----------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~ 201 (235)
T 3llm_A 134 GEEP----------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRD 201 (235)
T ss_dssp TCCT----------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHH
T ss_pred cccc----------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHH
Confidence 1000 0000100 0000 0111112344655554 344688999999999966 6777766544444
Q ss_pred HHHhcC-CceEEEE-cCCHHHHHHh
Q 008362 427 VKRAKQ-GRAIILT-THSMEEAEAL 449 (568)
Q Consensus 427 l~~~~~-g~tiil~-tH~~~e~~~l 449 (568)
+..... -++++++ |.+.+...++
T Consensus 202 i~~~~~~~~~il~SAT~~~~~~~~~ 226 (235)
T 3llm_A 202 VVQAYPEVRIVLMSATIDTSMFCEY 226 (235)
T ss_dssp HHHHCTTSEEEEEECSSCCHHHHHH
T ss_pred HHhhCCCCeEEEEecCCCHHHHHHH
Confidence 444333 3344443 5554444333
No 230
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.14 E-value=0.00023 Score=67.98 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=24.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+.++++.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345666665 499999999999999999875
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.05 E-value=0.00059 Score=62.02 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.++++|++|+|||||++.++|...+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~~ 29 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENVY 29 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee
Confidence 5899999999999999999996543
No 232
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.05 E-value=0.0014 Score=62.21 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++|.++++||.-. +|+.....+.+.+.+...+..+|++|++.+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 5688999999765 788888888777765555778899988754
No 233
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.05 E-value=0.0003 Score=74.10 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=33.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCC-----------CCCCceEEEECCe
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGI-----------TRTTSGTAYVQGL 313 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl-----------~~p~~G~i~i~G~ 313 (568)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3457788999999999999999999998 6788899888764
No 234
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.03 E-value=0.00014 Score=67.90 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=31.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEE
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAY 309 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~ 309 (568)
...+|.++.|.|++||||||+.+.|++.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999998877777663
No 235
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00039 Score=64.17 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999985
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.99 E-value=0.00079 Score=72.02 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=91.7
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECCeeCCCcHHHhhcce----EEEcCCCCCCCC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQGLDIRTDMDRIYTSM----GVCPQEDLLWET 338 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G~~i~~~~~~~r~~i----g~~~Q~~~l~~~ 338 (568)
...|+.+.-.+++|+++.|.|++|+||||+..-++.......| .+.+...+. ...++.+++ +-++.+...-..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~~~~~i~~~~l~~g~ 264 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMCSEARIDMNRVRLGQ 264 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHHHHTTCCTTTCCGGG
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHHHHcCCCHHHHhCCC
Confidence 4567887767999999999999999999999877764432222 233322111 112221110 001111100001
Q ss_pred CCHHHHHHHHhhhcCCCchhHHHHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHc--CCCCEEEEeCCCCCCC
Q 008362 339 LTGREHLLFYGRLKNLKGPALTQAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLI--GNPKVVYMDEPSTGLD 416 (568)
Q Consensus 339 lTv~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~--~~p~lllLDEPtsgLD 416 (568)
++.++ .+++.+.++.+.-. ...-.....+|..+.+ +.++.+. .+++++++|..+.-.+
T Consensus 265 ---------------l~~~~-~~~~~~a~~~l~~~--~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 265 ---------------LTDRD-FSRLVDVASRLSEA--PIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp ---------------CCHHH-HHHHHHHHHHHHTS--CEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred ---------------CCHHH-HHHHHHHHHHHhcC--CEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCC
Confidence 11111 22333333333211 1111223456766653 3445554 6899999999865433
Q ss_pred H------HHH----HHHHHHHHHh-c-CCceEEEEcCCHH-------------------HHHHhCCEEEEEEC
Q 008362 417 P------ASR----NNLWNVVKRA-K-QGRAIILTTHSME-------------------EAEALCDRLGIFVD 458 (568)
Q Consensus 417 ~------~~r----~~i~~~l~~~-~-~g~tiil~tH~~~-------------------e~~~l~dri~il~~ 458 (568)
+ ..| .++...|+.+ + .|.+||+++|--. .++..||.|+.|..
T Consensus 325 ~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 325 PGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 2 122 2344445553 3 3899999998311 35678999988864
No 237
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.92 E-value=0.0009 Score=69.00 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987553
No 238
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.91 E-value=0.00014 Score=68.74 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998765 4556655443
No 239
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.89 E-value=0.0011 Score=62.28 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999987554
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.87 E-value=0.00098 Score=69.54 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=27.8
Q ss_pred eeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 266 AVNGLSLALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 266 al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
.+++..+++.+| +++|.|+|||||||++..|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 457788888775 99999999999999998876
No 241
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0011 Score=67.35 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHHHHh-cCCceEEEEcC
Q 008362 401 GNPKVVYMDEPST-GLDPASRNNLWNVVKRA-KQGRAIILTTH 441 (568)
Q Consensus 401 ~~p~lllLDEPts-gLD~~~r~~i~~~l~~~-~~g~tiil~tH 441 (568)
.++++|++||+-. .-|+..++.+...+... ..|+.+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999854 33557888888888774 45666666655
No 242
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.80 E-value=0.00063 Score=65.16 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999986543
No 243
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.79 E-value=0.0005 Score=64.89 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
+++|.|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.76 E-value=0.00063 Score=63.44 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred eeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 269 GLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 269 ~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++|+...+|.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999865
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.0008 Score=63.77 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
..+|.+++|+||+||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999988664
No 246
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0025 Score=63.25 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++..+.|.||.|+||||+.+.++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456678899999999999999998754
No 247
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.61 E-value=0.018 Score=61.31 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
++.++.++|++|+||||+..-|+..+....-++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kV 131 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKV 131 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeE
Confidence 467999999999999999999987665433334
No 248
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.59 E-value=0.00072 Score=63.06 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCC---ceEEEECCee
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTT---SGTAYVQGLD 314 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~---~G~i~i~G~~ 314 (568)
.++++.|++|||||||++.|.+.+++. -|.+..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999876543 4666666544
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.58 E-value=0.0011 Score=61.44 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
-++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 250
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.49 E-value=0.0003 Score=72.88 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=33.3
Q ss_pred ceeeeeEEEEeCCcE--EEEEcCCCCcHHHHHHHHhCCC
Q 008362 265 VAVNGLSLALPSGEC--FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 265 ~al~~isl~i~~Gei--~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+++++++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888888899988 9999999999999999999864
No 251
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.45 E-value=0.0072 Score=53.91 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=29.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceE-EEEcCCHHHH
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAI-ILTTHSMEEA 446 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~ti-il~tH~~~e~ 446 (568)
..+|++||. ..|++..+..+.+.+.....+..+ ..++.++++.
T Consensus 77 ~g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 77 GGTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TSCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHH
T ss_pred CcEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHH
Confidence 357999998 468898889998888554444444 4444555544
No 252
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.0013 Score=64.51 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=28.4
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCee
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLD 314 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~ 314 (568)
+++++...++| +.|.||+|+||||+.+.|++..... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44444555555 8899999999999999999875421 35555543
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.34 E-value=0.01 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.635 Sum_probs=23.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999866653
No 254
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.33 E-value=0.0011 Score=65.11 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=32.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
...++.++.|.|++||||||+.+.|+..+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999998764 35677777544
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.32 E-value=0.0017 Score=60.01 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+|.+++|.|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.31 E-value=0.0018 Score=62.87 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-.+|.+++|.|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999863
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.28 E-value=0.00044 Score=79.56 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=28.7
Q ss_pred eEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 270 LSLALPSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 270 isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++.+.+++.+.|.||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35677899999999999999999999999876
No 258
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.19 E-value=0.0032 Score=65.55 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC-----------CCCCCceEEEECC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG-----------ITRTTSGTAYVQG 312 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G-----------l~~p~~G~i~i~G 312 (568)
|-.++|+|.+|+|||||++.|+| ...|+.|.+.+.|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467888888776
No 259
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.04 E-value=0.00024 Score=69.01 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred HcCCCCEEEEeCCCCC-CCHHHHHHHHHHHHH-hcCCceEEEEcC
Q 008362 399 LIGNPKVVYMDEPSTG-LDPASRNNLWNVVKR-AKQGRAIILTTH 441 (568)
Q Consensus 399 l~~~p~lllLDEPtsg-LD~~~r~~i~~~l~~-~~~g~tiil~tH 441 (568)
+..+|+++++|||-.- .+.......|+.+.. +..|..++.|+|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3358999999997632 332222334555544 567889999998
No 260
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.00 E-value=0.0066 Score=56.16 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh-CC----CCCCce
Q 008362 279 CFGMLGPNGAGKTTFISMMI-GI----TRTTSG 306 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~-Gl----~~p~~G 306 (568)
-++++|+.|+|||||++.++ |. ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 46799999999999996554 43 456655
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.00 E-value=0.002 Score=67.57 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCC---CHHHHHHHHHHHHHhc-CCceEEEEcCCHHHHH
Q 008362 401 GNPKVVYMDEPSTGL---DPASRNNLWNVVKRAK-QGRAIILTTHSMEEAE 447 (568)
Q Consensus 401 ~~p~lllLDEPtsgL---D~~~r~~i~~~l~~~~-~g~tiil~tH~~~e~~ 447 (568)
..|.++++||-=.=+ +|...+.+.+.+++.+ .|..++++||+++++.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 568999999987666 4778888888888865 5999999999998653
No 262
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.016 Score=59.79 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+...+.|.||.|+||||+.+.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678899999999999999998754
No 263
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.93 E-value=0.0037 Score=57.56 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999986
No 264
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.03 Score=52.09 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
.++.++++||. ..+++.....+.+.+.....+..+|++|+..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46889999995 4577877788888777655567778887765
No 265
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.91 E-value=0.012 Score=56.92 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~----------~~e~~~l~dri~il~ 457 (568)
.+++++++||--. +++. +.+.+..+ +.|.+||++.|+ ..++..+||+|.-|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3689999999864 6654 33334442 359999999992 466777999998775
No 266
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.91 E-value=0.0016 Score=63.63 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..-+++|.||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999843
No 267
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.82 E-value=0.035 Score=58.68 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
-.+..++.|.|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999999975
No 268
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.82 E-value=0.024 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
...-+.|.||.|+||||+.+.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999874
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.81 E-value=0.0045 Score=56.09 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.021 Score=58.10 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHH-HHHhCCC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFI-SMMIGIT 301 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll-~~l~Gl~ 301 (568)
.+++| ++-|.||.|+|||||. .+++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence 37789 8999999999999994 5554443
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.69 E-value=0.015 Score=71.17 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=28.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCce
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIGITRTTSG 306 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G 306 (568)
.+++|+++.|.||+|+|||||...++.......|
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 4999999999999999999999888775443333
No 272
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.63 E-value=0.14 Score=55.27 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.2
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..|+.+.-.+++|+++.|.|++|+||||+..-++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 35666554699999999999999999999765553
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.63 E-value=0.0067 Score=55.53 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
No 274
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.63 E-value=0.0085 Score=64.17 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHHHH
Q 008362 388 GMKRRLSVAISLIGNPKVVYMDEP-STGLDPASRNNLWNVVKRAKQGRAIILTTHSMEEA 446 (568)
Q Consensus 388 G~kqrl~la~Al~~~p~lllLDEP-tsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~e~ 446 (568)
.+++....+...+.+++++|+... +.|+.+.. ..+++.+++ .++.++++-+-+|..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 366666677777778888777654 44565543 456655543 477777777766644
No 275
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.007 Score=55.81 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
|.++.|.|+.||||||+.+.|+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999753
No 276
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.55 E-value=0.063 Score=53.56 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHhcCCceEEEEcCCH
Q 008362 402 NPKVVYMDEPST--------GLDPASRNNLWNVVKRAKQGRAIILTTHSM 443 (568)
Q Consensus 402 ~p~lllLDEPts--------gLD~~~r~~i~~~l~~~~~g~tiil~tH~~ 443 (568)
++.+|++||--. ..++.....+.+.+.....+..+|++|+..
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 467999999742 346777777777777655567777887653
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.51 E-value=0.0069 Score=54.65 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 008362 279 CFGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l 297 (568)
+++|.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 278
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.50 E-value=0.0066 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=22.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.++.|.|++||||||+.+.|+-
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 279
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.48 E-value=0.0076 Score=57.34 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++-+++|.|++||||||+.++|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 280
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.47 E-value=0.002 Score=60.88 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
+++|.|++||||||+.+.|...+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.41 E-value=0.0076 Score=60.53 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
.|.++.|.||+||||||+.+.|..-.+ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999986442 36677765
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.39 E-value=0.0069 Score=59.61 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|||||||||+.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.37 E-value=0.007 Score=56.50 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQG 312 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G 312 (568)
..+++|.|+.||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 458999999999999999999975 6556654
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.26 E-value=0.0092 Score=55.61 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999754
No 285
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.21 E-value=0.0082 Score=55.01 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.|.|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.0095 Score=56.01 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.|.||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5799999999999999987543
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.12 E-value=0.012 Score=54.33 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+.++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999753
No 288
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.11 E-value=0.024 Score=57.84 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=27.1
Q ss_pred eeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 267 VNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 267 l~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
|+.+--.+++|.++.|.||.|+|||||...++.
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 444334688999999999999999999998874
No 289
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.10 E-value=0.012 Score=54.91 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999766
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.09 E-value=0.01 Score=54.56 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.++.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 291
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.08 E-value=0.012 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999986
No 292
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.08 E-value=0.011 Score=58.86 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 293
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.06 E-value=0.0066 Score=56.24 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
.++++.|++|||||||++.|.+.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999886543
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.05 E-value=0.048 Score=67.77 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=28.0
Q ss_pred ceeeeeEE--EEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..||.+-= .+++|+++-|.||.|+|||||...++..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34555422 4999999999999999999998766543
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.99 E-value=0.013 Score=54.82 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987544
No 296
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.021 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 297
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.95 E-value=0.03 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.-.++++|+.|+|||||++.+++-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34568999999999999999998753
No 298
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.93 E-value=0.014 Score=53.86 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++.+++|.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 299
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.90 E-value=0.014 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++.+++|.|+.||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999999753
No 300
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.87 E-value=0.034 Score=49.37 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCceEEEEcC
Q 008362 403 PKVVYMDEPSTGLDPASRNNLWNVVKRAK-QGRAIILTTH 441 (568)
Q Consensus 403 p~lllLDEPtsgLD~~~r~~i~~~l~~~~-~g~tiil~tH 441 (568)
..++++||.- .+++..+..+.+.+.+.. .+..+|.+|+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4679999964 678888888888887653 3455555554
No 301
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.87 E-value=0.014 Score=57.42 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
No 302
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.84 E-value=0.015 Score=54.77 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+|.+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 303
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.84 E-value=0.017 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.|-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 36899999999999999998754
No 304
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.012 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|+.|+|||||++.++|-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 678999999999999999998643
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.81 E-value=0.014 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
No 306
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.80 E-value=0.023 Score=57.77 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...+++..+++ .|.-+.|.|++|+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 45788888888 789999999999999999998876
No 307
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.79 E-value=0.013 Score=61.16 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl 300 (568)
+||+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.77 E-value=0.013 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
++++|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 68999999999999999988543
No 309
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.71 E-value=0.016 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 274 LPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 274 i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..+|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999853
No 310
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.71 E-value=0.016 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999854
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.68 E-value=0.03 Score=64.74 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCce-EEEECC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSG-TAYVQG 312 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G-~i~i~G 312 (568)
..+.|.||+|+|||++.+.|+.......+ -+.++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47889999999999999999987654333 344443
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.65 E-value=0.013 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.++.|.|+.||||||+.+.|+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999743
No 313
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.65 E-value=0.16 Score=51.49 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+..-+.|.||.|+||||+.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 44567899999999999999999865
No 314
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.64 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998744
No 315
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.57 E-value=0.017 Score=52.13 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 316
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.55 E-value=0.017 Score=56.48 Aligned_cols=56 Identities=7% Similarity=-0.024 Sum_probs=34.5
Q ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c---CCceEEEEcCCHHH
Q 008362 389 MKRRLSVAISL---IGNPKVVYMDEPSTGLDPASRNNLWNVVKRA-K---QGRAIILTTHSMEE 445 (568)
Q Consensus 389 ~kqrl~la~Al---~~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~---~g~tiil~tH~~~e 445 (568)
++.+-.+.+++ ..+++++|+--+.+.++.. .+.+++.+++. . .+.++|+++|-.|.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 33333444444 3788888777665566554 45556666553 2 26899999997764
No 317
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.54 E-value=0.011 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
--++++|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999975
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.53 E-value=0.018 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.++|..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.48 E-value=0.015 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 320
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.47 E-value=0.022 Score=50.75 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3689999999999999999874
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.47 E-value=0.017 Score=51.21 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998863
No 322
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.46 E-value=0.02 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|+.||||||+.+.|.-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.46 E-value=0.019 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.|.|+.||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998644
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.46 E-value=0.017 Score=51.11 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998754
No 325
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.41 E-value=0.018 Score=51.17 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 326
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.15 Score=62.54 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=27.8
Q ss_pred ceeeeeEE--EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 265 VAVNGLSL--ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 265 ~al~~isl--~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
..||.+-= .+++|+++-|.||.|+|||||.--++.
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45666532 489999999999999999999866654
No 327
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.38 E-value=0.018 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.++|-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 328
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.32 E-value=0.056 Score=55.29 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=32.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++++++++||. -.|++.+...+.+.+.+...+..+|++|++.+
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 46799999995 45788888888777766555778888888764
No 329
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.32 E-value=0.019 Score=52.68 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57899999999999999998864
No 330
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.30 E-value=0.019 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4689999999999999999865
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.24 E-value=0.023 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
..+.+++|.|+.||||||+.+.|+-.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999997643
No 332
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.24 E-value=0.026 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+|-.+.|.|+.||||||+.+.|+-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999754
No 333
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.24 E-value=0.025 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 334
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.035 Score=52.14 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3689999999999999988764
No 335
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.23 E-value=0.025 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.++|-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999853
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.23 E-value=0.026 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
No 337
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.23 E-value=0.019 Score=51.30 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.+.|-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 6899999999999999998753
No 338
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.22 E-value=0.019 Score=51.84 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 339
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.21 E-value=0.021 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999864
No 340
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.21 E-value=0.15 Score=54.26 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=30.0
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
...|+.+.-.+++|+++.|.|+.|+||||+.--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 346777665799999999999999999999876654
No 341
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.17 E-value=0.022 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
-++++|+.|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999986543
No 342
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.16 E-value=0.025 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++.++.|.|+.||||||+.+.|+-.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999853
No 343
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.16 E-value=0.027 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999988743
No 344
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.14 E-value=0.025 Score=57.18 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|+|++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 345
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.13 E-value=0.027 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
=++++|.|+.||||||+.+.|+-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
No 346
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.08 E-value=0.034 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999874
No 347
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.08 E-value=0.023 Score=50.66 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
No 348
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.08 E-value=0.023 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 349
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.04 E-value=0.023 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 350
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.03 E-value=0.13 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 402 NPKVVYMDEPSTGLD-PASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 402 ~p~lllLDEPtsgLD-~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
+++++++||.- .+. +.....+.+.+.+...+..+|++|++.+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 78999999984 344 6677777777776666778888888765
No 351
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.02 E-value=0.027 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.99 E-value=0.024 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999863
No 353
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.97 E-value=0.025 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|+.|||||||++.|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.97 E-value=0.033 Score=52.13 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+-+++|.|+.||||||+.+.|+-.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.96 E-value=0.029 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 356
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.95 E-value=0.025 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999763
No 357
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.95 E-value=0.029 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999997643
No 358
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.94 E-value=0.024 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 359
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.90 E-value=0.026 Score=50.20 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 008362 280 FGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~G 299 (568)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999976
No 360
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.89 E-value=0.028 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999854
No 361
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.88 E-value=0.014 Score=62.64 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=35.5
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGITRTTSGTAYV 310 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i 310 (568)
..+++.+ ..+-+|+..+|+|++|+|||||++.|++......|.+.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 3467776 677799999999999999999999998765443444443
No 362
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.86 E-value=0.046 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 363
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.86 E-value=0.032 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
+..+++|.|+.||||||+.+.|+-.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.85 E-value=0.033 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.84 E-value=0.031 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+.+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
No 366
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=93.81 E-value=0.027 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 008362 280 FGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++++|+.|+|||||++.|.|-.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998754
No 367
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.80 E-value=0.027 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998744
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.80 E-value=0.028 Score=50.94 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999753
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.80 E-value=0.027 Score=53.71 Aligned_cols=25 Identities=16% Similarity=0.077 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+.++.|.|+.||||||+.+.|+--
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999753
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.79 E-value=0.027 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 371
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.78 E-value=0.034 Score=55.02 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCCCCceE
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITRTTSGT 307 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~p~~G~ 307 (568)
-.++++|.+|+|||||++.|+|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 578999999999999999999976654443
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.78 E-value=0.034 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 373
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.77 E-value=0.028 Score=55.78 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.76 E-value=0.032 Score=50.98 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
=-++++|+.|+|||||++.+++-.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999743
No 375
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.74 E-value=0.028 Score=50.98 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
No 376
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.74 E-value=0.028 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.71 E-value=0.034 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|.|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
No 378
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.63 E-value=0.03 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|.|+.||||||+-+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.62 E-value=0.03 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998854
No 380
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.60 E-value=0.031 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.58 E-value=0.036 Score=49.82 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 382
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57 E-value=0.08 Score=52.81 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++++++++||. -.+++.....+.+.+.+...+..+|++|++.+
T Consensus 106 ~~~~viiiDe~-~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 106 GKHKIVILDEA-DSMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp TCCEEEEEESG-GGSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CCceEEEEECc-ccCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 35899999995 34667777777777776556777888887754
No 383
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.55 E-value=0.029 Score=51.05 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
No 384
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.52 E-value=0.032 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 385
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.52 E-value=0.037 Score=55.93 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|||||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999985
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.031 Score=51.54 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999999873
No 387
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.46 E-value=0.033 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 36899999999999999998753
No 388
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.45 E-value=0.042 Score=49.91 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3679999999999999999864
No 389
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.44 E-value=0.037 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
No 390
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.42 E-value=0.034 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
No 391
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.42 E-value=0.044 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 392
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.42 E-value=0.03 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 393
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.42 E-value=0.022 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.41 E-value=0.034 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998743
No 395
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.41 E-value=0.043 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998743
No 396
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.41 E-value=0.04 Score=51.17 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.35 E-value=0.035 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 398
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.34 E-value=0.043 Score=52.55 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 399
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.32 E-value=0.044 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++||.|+.||||||+.++|.-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999864
No 400
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.32 E-value=0.034 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36899999999999999998743
No 401
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.29 E-value=0.039 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4689999999999999999874
No 402
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.04 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.+++-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999963
No 403
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.26 E-value=0.057 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998853
No 404
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.24 E-value=0.048 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
++-+++|.||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999999974
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.23 E-value=0.043 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999884
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.22 E-value=0.045 Score=50.77 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITRT 303 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~p 303 (568)
-++++|+.|+|||||++.+.|-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4779999999999999999986543
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.21 E-value=0.035 Score=51.64 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57799999999999999998753
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.17 E-value=0.039 Score=50.80 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
No 409
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.17 E-value=0.04 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 410
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.14 E-value=0.046 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999773
No 411
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.13 E-value=0.045 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++++|+.|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999884
No 412
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.037 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 46799999999999999998754
No 413
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.12 E-value=0.041 Score=55.24 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
No 414
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.10 E-value=0.042 Score=50.46 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3689999999999999999863
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.09 E-value=0.11 Score=56.07 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=56.4
Q ss_pred cccccCCCCChhHHHHHHHHHHHc--C---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEE
Q 008362 377 VADKQAGKYSGGMKRRLSVAISLI--G---------------NPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILT 439 (568)
Q Consensus 377 ~~~~~~~~LSgG~kqrl~la~Al~--~---------------~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~ 439 (568)
+.++..+++||||+|-.-+|++.+ . .=++++|||. +-||....+...++++++ |-=+|++
T Consensus 372 ~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliia 448 (483)
T 3euj_A 372 WMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIA 448 (483)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEE
T ss_pred eeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEE
Confidence 456678899999999665555433 1 2368999999 999999999999999864 5556677
Q ss_pred cCCHHHHHHhCCEEEEEE
Q 008362 440 THSMEEAEALCDRLGIFV 457 (568)
Q Consensus 440 tH~~~e~~~l~dri~il~ 457 (568)
|=+ .+...+|.++.+.
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 766 5555677776654
No 416
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.04 E-value=0.039 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999975
No 417
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.03 E-value=0.042 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4689999999999999999864
No 418
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.03 E-value=0.044 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999854
No 419
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.02 E-value=0.039 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.043 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.043 Score=50.24 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 422
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.99 E-value=0.056 Score=51.71 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+|-++.+-|+.||||||+.+.|.--+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999976554
No 423
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.96 E-value=0.029 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++-++||-|+.||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998643
No 424
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.95 E-value=0.052 Score=51.02 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
-++++|+.|+|||||++.+++-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 368999999999999999997543
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.94 E-value=0.055 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 426
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.93 E-value=0.096 Score=48.60 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred cceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 264 KVAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 264 ~~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
+..++..-+++ .|.-+.|.|++|+|||||...+..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45667666666 588999999999999999887754
No 427
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.93 E-value=0.045 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 56899999999999999998753
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.92 E-value=0.052 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 429
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.85 E-value=0.036 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999874
No 430
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.84 E-value=0.05 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.83 E-value=0.048 Score=52.81 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+|-++.+-|+.||||||+.+.|.-.+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999986553
No 432
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.82 E-value=0.25 Score=50.20 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=31.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCceEEEEcCCHH
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRAKQGRAIILTTHSME 444 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~~~g~tiil~tH~~~ 444 (568)
++.+|+++||.= .|...+...+.+.+.+-..+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999963 4667777666666654444677888998875
No 433
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.80 E-value=0.061 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 434
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.79 E-value=0.047 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 435
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.74 E-value=0.053 Score=54.06 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999983
No 436
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.66 E-value=0.053 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999763
No 437
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.64 E-value=0.057 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999975
No 438
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.64 E-value=0.048 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 439
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.62 E-value=0.061 Score=51.10 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|-.+.|.|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999997543
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.60 E-value=0.037 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=8.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.58 E-value=0.064 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.++.+.|++||||||+.+.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999976553
No 442
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.58 E-value=0.072 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+..+.|.||.|+||||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999988754
No 443
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.51 E-value=0.056 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4689999999999999888763
No 444
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.45 E-value=0.054 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.++++|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 688999999999999999999653
No 445
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.44 E-value=0.071 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|.++.+-|+.||||||..+.|.-.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
No 446
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.40 E-value=0.059 Score=53.09 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999854
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.36 E-value=0.069 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++|+|..|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
No 448
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.30 E-value=0.08 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
.+..+.|.|+.||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999854
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.29 E-value=0.07 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~G 299 (568)
.++.|.|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999986
No 450
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.24 E-value=0.059 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 451
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.24 E-value=0.067 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998744
No 452
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.15 E-value=0.073 Score=49.50 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 36899999999999999998743
No 453
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.07 E-value=0.082 Score=50.74 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=27.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCCCCCceEE
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGITRTTSGTA 308 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i 308 (568)
.+|.++.+-|+.||||||+.+.|.-.+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36889999999999999999999887655 3443
No 454
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.07 E-value=0.036 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.++|-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998643
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.04 E-value=0.028 Score=59.76 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCCceEEEECCeeC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTTSGTAYVQGLDI 315 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~~G~i~i~G~~i 315 (568)
..+++++|++|+||||+...|++.+.....++.+-..|.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 358999999999999999999997765444555544443
No 456
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.02 E-value=0.087 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=24.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+++|+++.|.||+|+||||+...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
No 457
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.96 E-value=0.052 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999999965
No 458
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.93 E-value=0.08 Score=54.38 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.+++|.||+||||||+.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3899999999999999999987653
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.86 E-value=0.075 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~G 299 (568)
.+..++.|+||.||||+|.-+.|+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999984
No 460
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.85 E-value=0.072 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67899999999999998887643
No 461
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.81 E-value=0.07 Score=49.76 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 3689999999999999999864
No 462
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.80 E-value=0.037 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=3.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998865
No 463
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.79 E-value=0.098 Score=50.49 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+|-++.+-|+.||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999986553
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.77 E-value=0.29 Score=61.01 Aligned_cols=35 Identities=29% Similarity=0.463 Sum_probs=30.8
Q ss_pred cceeeeeE--EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 008362 264 KVAVNGLS--LALPSGECFGMLGPNGAGKTTFISMMI 298 (568)
Q Consensus 264 ~~al~~is--l~i~~Gei~~LlG~NGaGKTTll~~l~ 298 (568)
...|+++. ..+++|+++.+.||.|+|||||...+.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678877 579999999999999999999998876
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.73 E-value=0.13 Score=48.70 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.6
Q ss_pred ceeeeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 265 VAVNGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 265 ~al~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..++..-+++ .|..+.|.||+|+|||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566666665 5789999999999999999988754
No 466
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.078 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 467
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.68 E-value=0.1 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+.+++|.||+|||||||...|+--.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 468
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.65 E-value=0.28 Score=47.58 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCC----------HHHHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHS----------MEEAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~----------~~e~~~l~dri~il~ 457 (568)
.+.+++++||----.| ++++++.+ ..|+.||++.++ +.++..+||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7889999999866544 55555543 379999999999 556777899997764
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.58 E-value=0.099 Score=50.45 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
+|.++++-|+.||||||+.+.|+-.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36688999999999999999998755
No 470
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.56 E-value=0.076 Score=49.64 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988875
No 471
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.55 E-value=0.1 Score=53.53 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
++.++.|+||.|||||||-..|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999765
No 472
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.43 E-value=0.071 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
.-+++|+|+.|+|||||++.|++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999987654
No 473
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.41 E-value=0.12 Score=51.53 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITRTT 304 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~p~ 304 (568)
+-.++++|.+|+|||||+|.|+|-....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~ 147 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAK 147 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred CceEEEEecCCCchHHHHHHHhcCceee
Confidence 3468999999999999999999976443
No 474
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.39 E-value=0.091 Score=47.48 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+..+.|.||.|+||||+++.++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999987543
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.36 E-value=0.31 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.+.|.||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.34 E-value=0.1 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++.|+||+||||||+-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999755
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.25 E-value=0.11 Score=48.62 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 478
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.24 E-value=0.091 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
-++++|+.|+|||||++.+++-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4679999999999999998864
No 479
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.18 E-value=0.095 Score=55.03 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCCCCcccccCCCCChhHHHHHHHHHHHcCCCCEEEE
Q 008362 361 QAVEESLKSVNLFHGGVADKQAGKYSGGMKRRLSVAISLIGNPKVVYM 408 (568)
Q Consensus 361 ~~~~~~l~~~~L~~~~~~~~~~~~LSgG~kqrl~la~Al~~~p~lllL 408 (568)
+.+.++++.++... +..++|.++.+++.-...+...|-++++
T Consensus 180 ~~~~~~l~~l~~~~------~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 180 NDVWEAMHKLNLPE------DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHHTTCCS------CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHHhccCC------ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 34667777776641 1357899998888877777789999887
No 480
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.10 E-value=0.16 Score=52.21 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.5
Q ss_pred eeeEEEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 268 NGLSLALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 268 ~~isl~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
..+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 455666655456899999999999999999874
No 481
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.88 E-value=0.13 Score=47.77 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcCCHH----------HHHHhCCEEEEEE
Q 008362 401 GNPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTHSME----------EAEALCDRLGIFV 457 (568)
Q Consensus 401 ~~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH~~~----------e~~~l~dri~il~ 457 (568)
.+++++++||--. +|+. +.+.++++ .+|..|+++.++.+ ....+||.+.-|.
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999643 5543 44455543 45889999888654 2334588886554
No 482
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.87 E-value=0.083 Score=51.75 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 275 PSGECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 275 ~~Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++-+++|-|+.||||||+.+.|+-.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 357799999999999999999998765
No 483
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.79 E-value=0.49 Score=45.26 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCceEEEEcC----------CHHHHHHhCCEEEEEE
Q 008362 402 NPKVVYMDEPSTGLDPASRNNLWNVVKRA-KQGRAIILTTH----------SMEEAEALCDRLGIFV 457 (568)
Q Consensus 402 ~p~lllLDEPtsgLD~~~r~~i~~~l~~~-~~g~tiil~tH----------~~~e~~~l~dri~il~ 457 (568)
+.+++++||--- +|+.. + +.++++ ..|+.||++.+ -+.++..+||.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 66543 2 455553 46999999999 5667788999998775
No 484
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.79 E-value=0.16 Score=48.48 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=22.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH
Q 008362 273 ALPSGECFGMLGPNGAGKTTFISMM 297 (568)
Q Consensus 273 ~i~~Gei~~LlG~NGaGKTTll~~l 297 (568)
.+++|+++.|.|+.|+||||+.--+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 5899999999999999999997544
No 485
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.54 E-value=0.14 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
++.|+||.||||+|.-+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
No 486
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=90.52 E-value=0.13 Score=53.54 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC-----------CCceEEEECCeeC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR-----------TTSGTAYVQGLDI 315 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~-----------p~~G~i~i~G~~i 315 (568)
-+||+|..-+|||||+|.|+|--. |..|.+.+.|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 589999999999999999999532 3457777776543
No 487
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.45 E-value=0.15 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
..++.|.||+|||||||...|+--.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
No 488
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.22 E-value=0.13 Score=54.63 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl 300 (568)
.++|+|+.|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.16 E-value=0.037 Score=54.18 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=21.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhCC
Q 008362 272 LALPSGECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 272 l~i~~Gei~~LlG~NGaGKTTll~~l~Gl 300 (568)
...++| +.|.||.|+||||+.+.++..
T Consensus 41 ~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 41 AKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334445 668999999999999999873
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.42 E-value=0.059 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 478999999999999988875
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.76 E-value=0.19 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 277 GECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 277 Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
|..+++=|+-||||||..+.|.-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45788889999999999999987654
No 492
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=89.70 E-value=0.1 Score=49.24 Aligned_cols=21 Identities=38% Similarity=0.733 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHH-HhCC
Q 008362 280 FGMLGPNGAGKTTFISM-MIGI 300 (568)
Q Consensus 280 ~~LlG~NGaGKTTll~~-l~Gl 300 (568)
++++|+.|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999998 6553
No 493
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=89.63 E-value=0.18 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|+.|+|||||++.|+|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57899999999999999999954
No 494
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.60 E-value=0.26 Score=46.46 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=52.0
Q ss_pred HHHHHHHHHHc--CCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCceEEEEcCCH-HHHHHhCCEEEEEECC
Q 008362 390 KRRLSVAISLI--GNPKVVYMDEPST--GLDPASRNNLWNVVKRAKQGRAIILTTHSM-EEAEALCDRLGIFVDG 459 (568)
Q Consensus 390 kqrl~la~Al~--~~p~lllLDEPts--gLD~~~r~~i~~~l~~~~~g~tiil~tH~~-~e~~~l~dri~il~~G 459 (568)
++.+.-|+..+ ++.++|||||.+. .++.....++.++|.+.-++..||+|+++. +++.++||.|--|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 45566666677 7789999999865 234444556888887655688999999886 5677889999888653
No 495
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.44 E-value=2.7 Score=44.43 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhCCCC
Q 008362 276 SGECFGMLGPNGAGKTTFISMMIGITR 302 (568)
Q Consensus 276 ~Gei~~LlG~NGaGKTTll~~l~Gl~~ 302 (568)
+..+++++|++|+||||+.--|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999988885543
No 496
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.29 E-value=0.056 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
-++++|+.|+|||||++.+++-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999998743
No 497
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.14 E-value=0.23 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhCC
Q 008362 278 ECFGMLGPNGAGKTTFISMMIGI 300 (568)
Q Consensus 278 ei~~LlG~NGaGKTTll~~l~Gl 300 (568)
--++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999998775
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.13 E-value=0.2 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 008362 279 CFGMLGPNGAGKTTFISMMIG 299 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~G 299 (568)
..||+|+.||||||..+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999999864
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.05 E-value=0.35 Score=51.21 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC------------CCceEEEECCeeC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGITR------------TTSGTAYVQGLDI 315 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~~------------p~~G~i~i~G~~i 315 (568)
.++|+|..++|||||++.|+|-.. ...|.+.++|..+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEE
Confidence 579999999999999999998532 1246777777653
No 500
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=88.91 E-value=0.14 Score=52.71 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 008362 279 CFGMLGPNGAGKTTFISMMIGIT 301 (568)
Q Consensus 279 i~~LlG~NGaGKTTll~~l~Gl~ 301 (568)
.++++|..|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999964
Done!