Your job contains 1 sequence.
>008363
MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSE
RDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQ
RLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS
IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA
ESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA
MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH
RFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRS
FLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSS
KKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLC
YGGAGGIIRCQEIRVPDIDKKMGKKIQK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008363
(568 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006132 - symbol:AT1G19485 species:3702 "Ara... 1491 2.7e-156 2
UNIPROTKB|Q8WUA4 - symbol:GTF3C2 "General transcription f... 155 5.9e-10 2
UNIPROTKB|F1MEI8 - symbol:GTF3C2 "Uncharacterized protein... 153 1.6e-09 2
MGI|MGI:1919002 - symbol:Gtf3c2 "general transcription fa... 151 9.5e-09 3
RGD|1560392 - symbol:Gtf3c2 "general transcription factor... 151 1.1e-08 3
DICTYBASE|DDB_G0279565 - symbol:DDB_G0279565 species:4468... 149 2.2e-07 4
MGI|MGI:1345961 - symbol:Coro1a "coronin, actin binding p... 134 1.4e-05 1
RGD|620009 - symbol:Coro1a "coronin, actin binding protei... 132 2.3e-05 1
UNIPROTKB|H3BRJ0 - symbol:CORO1A "Coronin" species:9606 "... 122 8.1e-05 1
UNIPROTKB|E2QSZ5 - symbol:CORO1A "Coronin" species:9615 "... 127 8.1e-05 1
UNIPROTKB|B4HRQ6 - symbol:Ciao1 "Probable cytosolic iron-... 124 9.8e-05 1
UNIPROTKB|B3NQR5 - symbol:Ciao1 "Probable cytosolic iron-... 122 0.00016 1
UNIPROTKB|Q92176 - symbol:CORO1A "Coronin-1A" species:991... 124 0.00017 1
UNIPROTKB|B4P7Q3 - symbol:Ciao1 "Probable cytosolic iron-... 121 0.00021 1
UNIPROTKB|H3BRY3 - symbol:CORO1A "Coronin" species:9606 "... 122 0.00022 1
UNIPROTKB|P31146 - symbol:CORO1A "Coronin-1A" species:960... 122 0.00029 1
UNIPROTKB|B4QFZ8 - symbol:Ciao1 "Probable cytosolic iron-... 119 0.00035 1
>TAIR|locus:505006132 [details] [associations]
symbol:AT1G19485 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR000637
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR017956
Pfam:PF00400 Pfam:PF02178 PROSITE:PS00354 SMART:SM00320
SMART:SM00384 EMBL:CP002684 GO:GO:0006355 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
KO:K15200 IPI:IPI00516286 RefSeq:NP_001185037.1 RefSeq:NP_564086.1
UniGene:At.41745 ProteinModelPortal:F4HP69 SMR:F4HP69 PRIDE:F4HP69
EnsemblPlants:AT1G19485.1 EnsemblPlants:AT1G19485.2 GeneID:838534
KEGG:ath:AT1G19485 OMA:AAGIVRC Uniprot:F4HP69
Length = 815
Score = 1491 (529.9 bits), Expect = 2.7e-156, Sum P(2) = 2.7e-156
Identities = 292/501 (58%), Positives = 355/501 (70%)
Query: 67 DVLGDFLSKPSLVSCPIPKDI-ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL 125
+ +G+ SKPS I +DI ALPRVVLCLAHNGKV WD+KW+P A D K +GYL
Sbjct: 325 EAVGNVPSKPS---SGISEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYL 381
Query: 126 AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM 185
AVLLGNGSLEVW+VP+ + A+YLSS K TDPRFVKL PVF+CS LKCG T+SIPLT+
Sbjct: 382 AVLLGNGSLEVWDVPMPKATSALYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSIPLTV 441
Query: 186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245
EWST D+LLAGCHDGTVALWKF + SS D+RPLL FSADT PIRAV+WAP ESD +
Sbjct: 442 EWSTLGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLFFSADTAPIRAVAWAPGESDQE 501
Query: 246 SANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305
SAN++ TAGH GLKFWD+RDPFRPLWD+HP P+FIY LDWL DP CV+LSFDDG +RI+S
Sbjct: 502 SANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPSCVLLSFDDGTLRILS 561
Query: 306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365
L+K AYDVPATG+P+ TKQQGL + NCS+F IWS+QVSRLTG+ AYC+ADG++ F+LT
Sbjct: 562 LVKVAYDVPATGRPYPNTKQQGLSVYNCSTFPIWSIQVSRLTGIAAYCTADGSIFHFELT 621
Query: 366 AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFLI 423
KAVEKD +RNR H+LCG +T +S V++P+ + P+ LKK V + GE R +RS L
Sbjct: 622 TKAVEKD-TRNRTPHYLCGQLTMKDSTFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLN 680
Query: 424 ESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTL-AALXXXXXXXXXXXXXX 482
ES S + NV SD QPLA + +PG ESE + T A
Sbjct: 681 ESPS------RYASNV--SDVQPLAFAHVEDPGLESESEGTNNKAAKSKAKKGKNNARAE 732
Query: 483 XEEDDQAMVCIDEEATDIQXXXXXXXXXXXXXXV--LPPKVVAMHRVRWNMNKGSERWLC 540
+E+ +A+VC+ E+ + + PPK+VAMHRVRWNMNKGSERWLC
Sbjct: 733 EDENSRALVCVKEDGGEEEGRRKAASNNSNGMKAEGFPPKMVAMHRVRWNMNKGSERWLC 792
Query: 541 YGGAGGIIRCQEIRVPDIDKK 561
YGGA GI+RCQEI P D K
Sbjct: 793 YGGAAGIVRCQEI-APTSDWK 812
Score = 54 (24.1 bits), Expect = 2.7e-156, Sum P(2) = 2.7e-156
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 2 STEKASSSNSSLKTPVRSRKLKSKARVE 29
S + SS N+++K PVR ++ K+K+ E
Sbjct: 287 SGQVLSSDNANIKLPVRRKRQKTKSTEE 314
>UNIPROTKB|Q8WUA4 [details] [associations]
symbol:GTF3C2 "General transcription factor 3C polypeptide
2" species:9606 "Homo sapiens" [GO:0000127 "transcription factor
TFIIIC complex" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IDA;TAS] [GO:0042791 "5S class rRNA
transcription from RNA polymerase III type 1 promoter" evidence=IC]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
EMBL:CH471053 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 Reactome:REACT_1788 eggNOG:NOG44594
GO:GO:0042797 GO:GO:0000127 GO:GO:0042791 EMBL:D13636 EMBL:BT009799
EMBL:BC000212 EMBL:BC020981 EMBL:AF054988 IPI:IPI00412837
IPI:IPI00878252 PIR:A56465 RefSeq:NP_001030598.1 RefSeq:NP_001512.1
UniGene:Hs.75782 ProteinModelPortal:Q8WUA4 SMR:Q8WUA4
DIP:DIP-38213N IntAct:Q8WUA4 STRING:Q8WUA4 PhosphoSite:Q8WUA4
DMDM:48428661 PaxDb:Q8WUA4 PRIDE:Q8WUA4 DNASU:2976
Ensembl:ENST00000264720 Ensembl:ENST00000359541 GeneID:2976
KEGG:hsa:2976 UCSC:uc002rju.1 UCSC:uc010eyz.2 CTD:2976
GeneCards:GC02M027548 HGNC:HGNC:4665 HPA:HPA035836 MIM:604883
neXtProt:NX_Q8WUA4 PharmGKB:PA29053 HOGENOM:HOG000133051
HOVERGEN:HBG056791 InParanoid:Q8WUA4 KO:K15200 OMA:GPVGNMT
OrthoDB:EOG4GXFN2 PhylomeDB:Q8WUA4 ChiTaRS:GTF3C2 GenomeRNAi:2976
NextBio:11802 ArrayExpress:Q8WUA4 Bgee:Q8WUA4 CleanEx:HS_GTF3C2
Genevestigator:Q8WUA4 GermOnline:ENSG00000115207 Uniprot:Q8WUA4
Length = 911
Score = 155 (59.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 60/221 (27%), Positives = 98/221 (44%)
Query: 99 NGKVAWDVKWKPYNAVDC-----KCK--QRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLS 151
NG + WD+K+ P A + K RLG LA+ +G + ++ +P +A+
Sbjct: 467 NGCI-WDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQ 522
Query: 152 SMKEGTDPRFVKLEPVFRCSMLKCGGTQSI-P------LTMEWSTSPPHDYLLAGCHDGT 204
+ P K++ V + L+ G Q+ P L++ W + PH +L AG ++G
Sbjct: 523 QPPDAVKPAIYKVQCV---ATLQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGM 579
Query: 205 VALWKFVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255
V W SD S+ P CF A +R + W A S + +++AG
Sbjct: 580 VVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANS-----HFLVSAGS 634
Query: 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
+KFWD+R P+ P I+ +F+ L WL P G +
Sbjct: 635 DRKIKFWDLRRPYEP---INSIKRFLSTELAWLLPYNGVTV 672
Score = 72 (30.4 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 523 AMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQ 567
A+H+VR++ N S WL GG G++R +R + +G ++Q
Sbjct: 836 AIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVR--GLASPLGHRMQ 878
>UNIPROTKB|F1MEI8 [details] [associations]
symbol:GTF3C2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000127 "transcription factor TFIIIC complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0003677 GO:GO:0006383 GO:GO:0000127
OMA:GPVGNMT GeneTree:ENSGT00390000018632 EMBL:DAAA02031593
IPI:IPI00713932 Ensembl:ENSBTAT00000022977 Uniprot:F1MEI8
Length = 913
Score = 153 (58.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 58/210 (27%), Positives = 91/210 (43%)
Query: 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFV 162
AW++ P A RLG LA+ +G + ++ +P +A+ + P
Sbjct: 482 AWELPGTPRKA---PLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPLDAVKPAIY 535
Query: 163 KLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWKFVA--- 212
K+ V + L+ G Q S P L++ W + PH +L AG ++G V LW
Sbjct: 536 KVHCV---ATLQVGSMQASEPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVLWNLPTNSP 592
Query: 213 ------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD 265
SD S+ P CF A +R + W A S + + +AG +KFWD+R
Sbjct: 593 LQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANS-----HFLASAGSDRKIKFWDLRR 647
Query: 266 PFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
P+ P I+ +F+ L WL P G +
Sbjct: 648 PYEP---INSIKRFLSTELAWLLPYNGVTV 674
Score = 70 (29.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 523 AMHRVRWNMNKGSERWLCYGGAGGIIRCQEIR 554
A+H+VR++ N S WL GG G++R +R
Sbjct: 838 AIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVR 869
>MGI|MGI:1919002 [details] [associations]
symbol:Gtf3c2 "general transcription factor IIIC,
polypeptide 2, beta" species:10090 "Mus musculus" [GO:0000127
"transcription factor TFIIIC complex" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1919002 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 GO:GO:0003677 GO:GO:0006383
GermOnline:ENSMUSG00000029144 GO:GO:0000127 CTD:2976
HOVERGEN:HBG056791 KO:K15200 OrthoDB:EOG4GXFN2 EMBL:AK008582
EMBL:AK012095 EMBL:AK043944 EMBL:AK046192 EMBL:AK083636
EMBL:AK151300 EMBL:AK152439 EMBL:AK129033 EMBL:BC034369
IPI:IPI00308807 RefSeq:NP_082177.2 UniGene:Mm.271923
ProteinModelPortal:Q8BL74 SMR:Q8BL74 STRING:Q8BL74
PhosphoSite:Q8BL74 PRIDE:Q8BL74 Ensembl:ENSMUST00000088010
GeneID:71752 KEGG:mmu:71752 UCSC:uc008wxh.1
GeneTree:ENSGT00390000018632 NextBio:334405 Bgee:Q8BL74
Genevestigator:Q8BL74 Uniprot:Q8BL74
Length = 907
Score = 151 (58.2 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
Identities = 57/216 (26%), Positives = 94/216 (43%)
Query: 104 WDVKWKPYNAVD-------CKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG 156
WD+K+ P A + RLG LA+ +G + ++ +P +A+ +
Sbjct: 467 WDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPPDA 523
Query: 157 TDPRFVKLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWK 209
P K++ + + L+ G Q S P L++ W + PH +L AG ++G V W
Sbjct: 524 MKPAIYKVQCL---ATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWN 580
Query: 210 FVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259
SD S+ P CF A +R + W A S + +++AG +K
Sbjct: 581 LPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANS-----HFLVSAGSDRKIK 635
Query: 260 FWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
FWD+R P+ P I+ +F+ L WL P G +
Sbjct: 636 FWDLRRPYEP---INCIKRFLSTELSWLLPYNGVTV 668
Score = 70 (29.7 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 523 AMHRVRWNMNKGSERWLCYGGAGGIIRCQEIR 554
A+H+VR++ N S WL GG G++R +R
Sbjct: 832 AIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVR 863
Score = 37 (18.1 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTA 51
+S K+ +S K P ++R+ S+ + + D L EDEE A
Sbjct: 209 LSGPKSPKVSSPTK-PKKTRQASSQGEEDGSARDEDFVLQVEGEDEEESEA 258
>RGD|1560392 [details] [associations]
symbol:Gtf3c2 "general transcription factor IIIC, polypeptide 2,
beta" species:10116 "Rattus norvegicus" [GO:0000127 "transcription
factor TFIIIC complex" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1560392 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 CTD:2976 HOVERGEN:HBG056791
KO:K15200 EMBL:BC087088 IPI:IPI00368730 RefSeq:NP_001020291.1
UniGene:Rn.228640 ProteinModelPortal:Q5PQP7 STRING:Q5PQP7
GeneID:313914 KEGG:rno:313914 NextBio:666990 Genevestigator:Q5PQP7
Uniprot:Q5PQP7
Length = 951
Score = 151 (58.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 57/216 (26%), Positives = 94/216 (43%)
Query: 104 WDVKWKPYNAVD-------CKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG 156
WD+K+ P A + RLG LA+ +G + ++ +P +A+ +
Sbjct: 511 WDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPPDA 567
Query: 157 TDPRFVKLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWK 209
P K++ + + L+ G Q S P L++ W + PH +L AG ++G V W
Sbjct: 568 MKPAIYKVQCL---ATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWN 624
Query: 210 FVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259
SD S+ P CF A +R + W A S + +++AG +K
Sbjct: 625 LPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANS-----HFLVSAGSDRKIK 679
Query: 260 FWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
FWD+R P+ P I+ +F+ L WL P G +
Sbjct: 680 FWDLRRPYEP---INCIKRFLSTELSWLLPYNGVTV 712
Score = 70 (29.7 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 523 AMHRVRWNMNKGSERWLCYGGAGGIIRCQEIR 554
A+H+VR++ N S WL GG G++R +R
Sbjct: 876 AIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVR 907
Score = 37 (18.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTA 51
+S K+ +S K P ++R+ S+ + + D L EDEE A
Sbjct: 253 LSGPKSPKVSSPTK-PKKTRQAASQGEEDGRARDEDFVLQVEGEDEEESEA 302
>DICTYBASE|DDB_G0279565 [details] [associations]
symbol:DDB_G0279565 species:44689 "Dictyostelium
discoideum" [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
SMART:SM00320 dictyBase:DDB_G0279565 Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AAFI02000031 RefSeq:XP_641703.1
EnsemblProtists:DDB0205852 GeneID:8622112 KEGG:ddi:DDB_G0279565
InParanoid:Q54WL4 Uniprot:Q54WL4
Length = 1094
Score = 149 (57.5 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 84 PKDIALPRVVLCLAHNGKVAWDVKWKPYNAV--DCKCKQ--RLGYLAVLLGNGSLEVWEV 139
P D + P++V + H G WD+KW PY D + K RLG L+ LLG+G++++W +
Sbjct: 635 PSDTSCPKLVYSITHEGNCCWDLKWMPYGGYYEDKETKSPIRLGVLSALLGDGTVKIWPI 694
Query: 140 PLLRTM-KAIYLSSMKEGTD-PRFVKLEPVFRCSM 172
P + K + K T +F+K++P+F S+
Sbjct: 695 PHPDFVEKQFNNDNSKTKTQLTKFLKIKPIFDQSL 729
Score = 53 (23.7 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 5 KASSSNSSLKTPVRS-RKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDS 63
+ S ++ + K P RS +K+ +K +E D Q S+ + ++ TA+ H SE +S
Sbjct: 258 RKSINSMTPKRPARSSKKVVNKLPIESSDDDSYQSASSGDSSDDYQTASE---HESESES 314
Score = 44 (20.5 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 519 PKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQE 552
PKV + V WN N L + + G IR E
Sbjct: 1059 PKV-NLTVVSWNKNTNYSNCLAFASSQGFIRVIE 1091
Score = 41 (19.5 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 423 IESNSSKSPNDKKGKNVLSSDNQPLALCYGNEP 455
IE+N++ + N+ + N DN L Y EP
Sbjct: 799 IENNNNNNNNNNENNNNNDDDNDNCEL-YFVEP 830
>MGI|MGI:1345961 [details] [associations]
symbol:Coro1a "coronin, actin binding protein 1A"
species:10090 "Mus musculus" [GO:0001772 "immunological synapse"
evidence=IDA] [GO:0001845 "phagolysosome assembly"
evidence=ISO;IBA] [GO:0001891 "phagocytic cup" evidence=ISO;IBA]
[GO:0003779 "actin binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005884 "actin
filament" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO;IDA] [GO:0006816 "calcium ion transport" evidence=IMP]
[GO:0006909 "phagocytosis" evidence=ISO] [GO:0007015 "actin
filament organization" evidence=IMP] [GO:0008022 "protein
C-terminus binding" evidence=ISO] [GO:0008064 "regulation of actin
polymerization or depolymerization" evidence=IMP] [GO:0008092
"cytoskeletal protein binding" evidence=IMP] [GO:0008360
"regulation of cell shape" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0016020 "membrane" evidence=IEA]
[GO:0016477 "cell migration" evidence=IMP] [GO:0030027
"lamellipodium" evidence=ISO;IBA] [GO:0030036 "actin cytoskeleton
organization" evidence=ISO] [GO:0030335 "positive regulation of
cell migration" evidence=IMP] [GO:0030595 "leukocyte chemotaxis"
evidence=IMP] [GO:0030833 "regulation of actin filament
polymerization" evidence=IMP] [GO:0030864 "cortical actin
cytoskeleton" evidence=ISO;IBA] [GO:0031252 "cell leading edge"
evidence=IDA] [GO:0031410 "cytoplasmic vesicle" evidence=IEA]
[GO:0031589 "cell-substrate adhesion" evidence=ISO] [GO:0032796
"uropod organization" evidence=IMP] [GO:0034097 "response to
cytokine stimulus" evidence=IMP] [GO:0042102 "positive regulation
of T cell proliferation" evidence=IMP] [GO:0042802 "identical
protein binding" evidence=IGI] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0043029 "T cell
homeostasis" evidence=IMP] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043548 "phosphatidylinositol 3-kinase binding"
evidence=ISO] [GO:0045335 "phagocytic vesicle" evidence=ISO;IBA]
[GO:0048873 "homeostasis of number of cells within a tissue"
evidence=IMP] [GO:0050870 "positive regulation of T cell
activation" evidence=IMP] [GO:0050918 "positive chemotaxis"
evidence=ISO;IBA] [GO:0051015 "actin filament binding"
evidence=ISO;IDA] [GO:0051126 "negative regulation of actin
nucleation" evidence=ISO;IBA] [GO:0071353 "cellular response to
interleukin-4" evidence=IDA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 MGI:MGI:1345961 GO:GO:0045335 GO:GO:0030670
GO:GO:0007015 Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0008360
InterPro:IPR019775 eggNOG:COG2319 GO:GO:0051015 GO:GO:0005884
GO:GO:0030027 GO:GO:0042802 GO:GO:0006816 GO:GO:0001891
GO:GO:0030864 GO:GO:0030335 GO:GO:0048873 GO:GO:0042102
GO:GO:0031589 GO:GO:0050918 GO:GO:0043029 GO:GO:0030833
GO:GO:0001772 GO:GO:0030595 GO:GO:0051126 GO:GO:0001845 CTD:11151
HOGENOM:HOG000166356 HOVERGEN:HBG059978 KO:K13882 OMA:FMALICE
OrthoDB:EOG4RNB8C GO:GO:0032796 InterPro:IPR015505
InterPro:IPR015048 InterPro:IPR015049 PANTHER:PTHR10856
Pfam:PF08953 Pfam:PF08954 EMBL:AF143955 EMBL:AF047388 EMBL:AF495468
EMBL:BC002136 EMBL:BC053398 EMBL:U89399 IPI:IPI00323600
RefSeq:NP_034028.1 UniGene:Mm.290482 PDB:2AKF PDB:2AQ5 PDB:2B4E
PDBsum:2AKF PDBsum:2AQ5 PDBsum:2B4E ProteinModelPortal:O89053
SMR:O89053 STRING:O89053 PhosphoSite:O89053 PaxDb:O89053
PRIDE:O89053 Ensembl:ENSMUST00000032949 Ensembl:ENSMUST00000106364
GeneID:12721 KEGG:mmu:12721 InParanoid:O89053 ChiTaRS:CORO1A
EvolutionaryTrace:O89053 NextBio:282000 Bgee:O89053
CleanEx:MM_CORO1A Genevestigator:O89053
GermOnline:ENSMUSG00000030707 GO:GO:0071353 Uniprot:O89053
Length = 461
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/181 (27%), Positives = 79/181 (43%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
L CG T + L + W P +D ++A G D TV +W+ + R P++ T
Sbjct: 76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
+ V+W P + NV+L+AG + WD+ L D+HP IY +DW
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
D + S D +R++ K V +P GT+ +H V S I + SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRM 242
Query: 347 T 347
+
Sbjct: 243 S 243
>RGD|620009 [details] [associations]
symbol:Coro1a "coronin, actin binding protein 1A" species:10116
"Rattus norvegicus" [GO:0001772 "immunological synapse"
evidence=IEA;ISO] [GO:0001845 "phagolysosome assembly"
evidence=ISO;IBA] [GO:0001891 "phagocytic cup" evidence=ISO;IBA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005884 "actin filament" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0006816 "calcium
ion transport" evidence=IEA;ISO] [GO:0006909 "phagocytosis"
evidence=ISO] [GO:0007015 "actin filament organization"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008064 "regulation of actin polymerization
or depolymerization" evidence=ISO] [GO:0008092 "cytoskeletal
protein binding" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008360 "regulation of cell shape"
evidence=ISO;IBA] [GO:0016477 "cell migration" evidence=ISO]
[GO:0030027 "lamellipodium" evidence=ISO;IBA] [GO:0030036 "actin
cytoskeleton organization" evidence=ISO] [GO:0030217 "T cell
differentiation" evidence=NAS] [GO:0030335 "positive regulation of
cell migration" evidence=IEA;ISO] [GO:0030595 "leukocyte
chemotaxis" evidence=ISO;IBA] [GO:0030670 "phagocytic vesicle
membrane" evidence=IEA] [GO:0030833 "regulation of actin filament
polymerization" evidence=IEA;ISO] [GO:0030864 "cortical actin
cytoskeleton" evidence=ISO;IBA] [GO:0031252 "cell leading edge"
evidence=ISO] [GO:0031589 "cell-substrate adhesion"
evidence=IEA;ISO] [GO:0032796 "uropod organization"
evidence=ISO;IBA] [GO:0034097 "response to cytokine stimulus"
evidence=IEA;ISO] [GO:0042102 "positive regulation of T cell
proliferation" evidence=IEA;ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=IEA;ISO] [GO:0043029 "T cell homeostasis"
evidence=IEA;ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043548 "phosphatidylinositol 3-kinase binding"
evidence=IEA;ISO] [GO:0045335 "phagocytic vesicle"
evidence=ISO;IBA] [GO:0048873 "homeostasis of number of cells
within a tissue" evidence=IEA;ISO] [GO:0050870 "positive regulation
of T cell activation" evidence=ISO] [GO:0050918 "positive
chemotaxis" evidence=ISO;IBA] [GO:0051015 "actin filament binding"
evidence=ISO;IBA] [GO:0051126 "negative regulation of actin
nucleation" evidence=ISO;IBA] [GO:0071353 "cellular response to
interleukin-4" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0015629 "actin cytoskeleton" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 RGD:620009 GO:GO:0045335
GO:GO:0030670 GO:GO:0007015 Gene3D:2.130.10.10 PROSITE:PS00678
GO:GO:0008360 InterPro:IPR019775 eggNOG:COG2319 GO:GO:0034097
GO:GO:0051015 GO:GO:0005884 GO:GO:0030027 GO:GO:0006816
GO:GO:0001891 GO:GO:0030864 GO:GO:0030335 GO:GO:0048873
GO:GO:0042102 GO:GO:0031589 GO:GO:0050918 GO:GO:0043029
GO:GO:0030833 GO:GO:0030217 GO:GO:0001772 GO:GO:0030595
GO:GO:0051126 GO:GO:0001845 CTD:11151 GeneTree:ENSGT00550000074317
HOGENOM:HOG000166356 HOVERGEN:HBG059978 KO:K13882 OMA:FMALICE
OrthoDB:EOG4RNB8C GO:GO:0032796 InterPro:IPR015505
InterPro:IPR015048 InterPro:IPR015049 PANTHER:PTHR10856
Pfam:PF08953 Pfam:PF08954 EMBL:AF416730 EMBL:AF495469 EMBL:BC086971
IPI:IPI00210071 RefSeq:NP_569095.1 UniGene:Rn.6990 HSSP:O89053
ProteinModelPortal:Q91ZN1 SMR:Q91ZN1 STRING:Q91ZN1
PhosphoSite:Q91ZN1 World-2DPAGE:0004:Q91ZN1 PRIDE:Q91ZN1
Ensembl:ENSRNOT00000026496 GeneID:155151 KEGG:rno:155151
UCSC:RGD:620009 InParanoid:Q91ZN1 NextBio:620883
Genevestigator:Q91ZN1 Uniprot:Q91ZN1
Length = 461
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 50/181 (27%), Positives = 79/181 (43%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
L CG T + L + W P +D ++A G D TV +W+ + R P++ T
Sbjct: 76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVVTLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
+ V+W P + NV+L+AG + WD+ L D+HP IY +DW
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
D + S D +R++ K V +P GT+ +H V S I + SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKERPHEGTRP--VHAVFVSEGKILTTGFSRM 242
Query: 347 T 347
+
Sbjct: 243 S 243
>UNIPROTKB|H3BRJ0 [details] [associations]
symbol:CORO1A "Coronin" species:9606 "Homo sapiens"
[GO:0005884 "actin filament" evidence=IEA] [GO:0001772
"immunological synapse" evidence=IEA] [GO:0006816 "calcium ion
transport" evidence=IEA] [GO:0007015 "actin filament organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0030335 "positive regulation of cell migration" evidence=IEA]
[GO:0030595 "leukocyte chemotaxis" evidence=IEA] [GO:0030833
"regulation of actin filament polymerization" evidence=IEA]
[GO:0031252 "cell leading edge" evidence=IEA] [GO:0032796 "uropod
organization" evidence=IEA] [GO:0034097 "response to cytokine
stimulus" evidence=IEA] [GO:0042102 "positive regulation of T cell
proliferation" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IEA] [GO:0043029 "T cell homeostasis"
evidence=IEA] [GO:0048873 "homeostasis of number of cells within a
tissue" evidence=IEA] [GO:0051015 "actin filament binding"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0031252 GO:GO:0007015 Gene3D:2.130.10.10
PROSITE:PS00678 GO:GO:0008360 InterPro:IPR019775 GO:GO:0015629
GO:GO:0034097 GO:GO:0006816 GO:GO:0030335 GO:GO:0048873
GO:GO:0042102 GO:GO:0043029 GO:GO:0030833 GO:GO:0001772
GO:GO:0030595 GO:GO:0032796 InterPro:IPR015505 InterPro:IPR015048
PANTHER:PTHR10856 Pfam:PF08953 HGNC:HGNC:2252 EMBL:AC012645
Ensembl:ENST00000563778 Bgee:H3BRJ0 Uniprot:H3BRJ0
Length = 249
Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ + R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W + + NV+L+AG + WD+ L ++HP IY +DW D
Sbjct: 135 GIVAW-----HTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDT--IYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
G + S D +RI+ K V +P GT+
Sbjct: 188 GGLICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222
>UNIPROTKB|E2QSZ5 [details] [associations]
symbol:CORO1A "Coronin" species:9615 "Canis lupus
familiaris" [GO:0051126 "negative regulation of actin nucleation"
evidence=IEA] [GO:0051015 "actin filament binding" evidence=IEA]
[GO:0050918 "positive chemotaxis" evidence=IEA] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA]
[GO:0045335 "phagocytic vesicle" evidence=IEA] [GO:0043548
"phosphatidylinositol 3-kinase binding" evidence=IEA] [GO:0043029
"T cell homeostasis" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042102 "positive
regulation of T cell proliferation" evidence=IEA] [GO:0034097
"response to cytokine stimulus" evidence=IEA] [GO:0032796 "uropod
organization" evidence=IEA] [GO:0031589 "cell-substrate adhesion"
evidence=IEA] [GO:0030864 "cortical actin cytoskeleton"
evidence=IEA] [GO:0030833 "regulation of actin filament
polymerization" evidence=IEA] [GO:0030595 "leukocyte chemotaxis"
evidence=IEA] [GO:0030335 "positive regulation of cell migration"
evidence=IEA] [GO:0030027 "lamellipodium" evidence=IEA] [GO:0008360
"regulation of cell shape" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007015 "actin filament
organization" evidence=IEA] [GO:0006816 "calcium ion transport"
evidence=IEA] [GO:0005884 "actin filament" evidence=IEA]
[GO:0001891 "phagocytic cup" evidence=IEA] [GO:0001845
"phagolysosome assembly" evidence=IEA] [GO:0001772 "immunological
synapse" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0045335 GO:GO:0007015 Gene3D:2.130.10.10
PROSITE:PS00678 GO:GO:0008360 InterPro:IPR019775 GO:GO:0034097
GO:GO:0005884 GO:GO:0030027 GO:GO:0006816 GO:GO:0001891
GO:GO:0030864 GO:GO:0030335 GO:GO:0048873 GO:GO:0042102
GO:GO:0031589 GO:GO:0050918 GO:GO:0043029 GO:GO:0030833
GO:GO:0001772 GO:GO:0030595 GO:GO:0051126 GO:GO:0001845 CTD:11151
GeneTree:ENSGT00550000074317 KO:K13882 OMA:FMALICE GO:GO:0032796
InterPro:IPR015505 InterPro:IPR015048 InterPro:IPR015049
PANTHER:PTHR10856 Pfam:PF08953 Pfam:PF08954 EMBL:AAEX03004406
RefSeq:XP_547069.3 Ensembl:ENSCAFT00000027103 GeneID:489949
KEGG:cfa:489949 NextBio:20863057 Uniprot:E2QSZ5
Length = 461
Score = 127 (49.8 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 44/156 (28%), Positives = 69/156 (44%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ ++ R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W P + NV+L+AG + WD+ L D+HP IY +DW D
Sbjct: 135 GIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDT--IYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
+ S D +RI+ K V +P GT+
Sbjct: 188 GALICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222
>UNIPROTKB|B4HRQ6 [details] [associations]
symbol:Ciao1 "Probable cytosolic iron-sulfur protein
assembly protein Ciao1" species:7238 "Drosophila sechellia"
[GO:0016226 "iron-sulfur cluster assembly" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016226
EMBL:CH480816 OrthoDB:EOG45DV4X RefSeq:XP_002033907.1
ProteinModelPortal:B4HRQ6 EnsemblMetazoa:FBtr0203159 GeneID:6609216
KEGG:dse:Dsec_GM20174 FlyBase:FBgn0175057 Uniprot:B4HRQ6
Length = 335
Score = 124 (48.7 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 71/291 (24%), Positives = 122/291 (41%)
Query: 98 HNGKVAWDVKWKPYNAVDCKC-KQRLGYLAVLLGN--GSLEVWEVPLLRTMKAI------ 148
H G++ W V W P V C + + + L GN G+ + RT++ I
Sbjct: 13 HKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGNTWGTKTILSDGHKRTIREIRWSPCG 71
Query: 149 -YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTV 205
YL+S + T + K F C+ G + ++ WS S LLA C D +V
Sbjct: 72 QYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSRDKSV 127
Query: 206 ALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR 264
+W+ VA D + +L + T ++ V W P + +V+ +A + +K +
Sbjct: 128 WIWE-VAGDDEFECAAVL--NPHTQDVKRVVWHPTK------DVLASASYDNTIKMF-AE 177
Query: 265 DPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320
+P WD + ++G+D+ D ++ DD ++I AY P
Sbjct: 178 EPIDNDWDCTATLTSHTSTVWGIDFDADGERLVSCSDDTTIKIWR----AYH-PGNTAGV 232
Query: 321 AGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366
A +QQ + C+ S AI+ V +LTG++A D + F+ T+
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETS 283
>UNIPROTKB|B3NQR5 [details] [associations]
symbol:Ciao1 "Probable cytosolic iron-sulfur protein
assembly protein Ciao1" species:7220 "Drosophila erecta"
[GO:0016226 "iron-sulfur cluster assembly" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016226
EMBL:CH954179 OrthoDB:EOG45DV4X RefSeq:XP_001975575.1
ProteinModelPortal:B3NQR5 EnsemblMetazoa:FBtr0142445 GeneID:6549053
KEGG:der:Dere_GG22391 FlyBase:FBgn0114563 Uniprot:B3NQR5
Length = 335
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 73/293 (24%), Positives = 118/293 (40%)
Query: 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL------RTMKAI--- 148
H G++ W V W P V C + + + GS W + RT++ I
Sbjct: 13 HKGRI-WGVAWHPKGNVFASCGEDKA-IRIWSLTGS--TWSTKTILSDGHKRTIREIRWS 68
Query: 149 ----YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HD 202
YL+S + T + K F C+ G + ++ WS S LLA C D
Sbjct: 69 PCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSRD 124
Query: 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262
+V +W+ VA D + +L ++ T ++ V W P + SA+ T +K +
Sbjct: 125 KSVWIWE-VAGDDEFECAAVL--NSHTQDVKRVVWHPTKEVLASASYDNT-----IKMY- 175
Query: 263 IRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK 318
DP WD + I+G+D+ D ++ DD ++I AY P
Sbjct: 176 AEDPVDNDWDCTATLTSHTSTIWGIDFDADGERLVSCSDDTTIKIWK----AYH-PGNSA 230
Query: 319 PFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366
A QQ + C+ S AI+ V +LTG++A D + F+ T+
Sbjct: 231 GVATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETS 283
>UNIPROTKB|Q92176 [details] [associations]
symbol:CORO1A "Coronin-1A" species:9913 "Bos taurus"
[GO:0051126 "negative regulation of actin nucleation" evidence=ISS]
[GO:0051015 "actin filament binding" evidence=ISS] [GO:0050918
"positive chemotaxis" evidence=ISS] [GO:0045335 "phagocytic
vesicle" evidence=ISS] [GO:0032796 "uropod organization"
evidence=ISS] [GO:0030864 "cortical actin cytoskeleton"
evidence=ISS] [GO:0030595 "leukocyte chemotaxis" evidence=ISS]
[GO:0030027 "lamellipodium" evidence=ISS] [GO:0008360 "regulation
of cell shape" evidence=ISS] [GO:0001891 "phagocytic cup"
evidence=ISS] [GO:0001845 "phagolysosome assembly" evidence=ISS]
[GO:0030670 "phagocytic vesicle membrane" evidence=IEA] [GO:0048873
"homeostasis of number of cells within a tissue" evidence=IEA]
[GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA]
[GO:0043029 "T cell homeostasis" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042102 "positive
regulation of T cell proliferation" evidence=IEA] [GO:0034097
"response to cytokine stimulus" evidence=IEA] [GO:0031589
"cell-substrate adhesion" evidence=IEA] [GO:0030833 "regulation of
actin filament polymerization" evidence=IEA] [GO:0030335 "positive
regulation of cell migration" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007015 "actin filament
organization" evidence=IEA] [GO:0006816 "calcium ion transport"
evidence=IEA] [GO:0005884 "actin filament" evidence=IEA]
[GO:0001772 "immunological synapse" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0045335 GO:GO:0030670 GO:GO:0007015 Gene3D:2.130.10.10
PROSITE:PS00678 GO:GO:0008360 InterPro:IPR019775 eggNOG:COG2319
GO:GO:0034097 GO:GO:0051015 GO:GO:0005884 GO:GO:0030027
GO:GO:0006816 GO:GO:0001891 GO:GO:0030864 GO:GO:0030335
GO:GO:0048873 GO:GO:0042102 GO:GO:0031589 GO:GO:0050918
GO:GO:0043029 GO:GO:0030833 GO:GO:0001772 GO:GO:0030595
GO:GO:0051126 GO:GO:0001845 EMBL:D44496 EMBL:BT025463 EMBL:BC102876
IPI:IPI00690160 PIR:S65666 RefSeq:NP_776946.1 UniGene:Bt.351
ProteinModelPortal:Q92176 SMR:Q92176 STRING:Q92176 PRIDE:Q92176
Ensembl:ENSBTAT00000011382 Ensembl:ENSBTAT00000051969 GeneID:282196
KEGG:bta:282196 CTD:11151 GeneTree:ENSGT00550000074317
HOGENOM:HOG000166356 HOVERGEN:HBG059978 InParanoid:Q92176 KO:K13882
OMA:FMALICE OrthoDB:EOG4RNB8C NextBio:20806021 GO:GO:0032796
InterPro:IPR015505 InterPro:IPR015048 InterPro:IPR015049
PANTHER:PTHR10856 Pfam:PF08953 Pfam:PF08954 Uniprot:Q92176
Length = 461
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D +V +W+ ++ R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCSVMVWEIPDGGLTLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W P + NV+L+AG + WD+ L D+HP IY +DW D
Sbjct: 135 GIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGVAVLTLGSDVHPDT--IYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
+ S D +RI+ K V +P GT+
Sbjct: 188 GALICTSCRDKRVRIIEPRKGTI-VAEKDRPHEGTR 222
>UNIPROTKB|B4P7Q3 [details] [associations]
symbol:Ciao1 "Probable cytosolic iron-sulfur protein
assembly protein Ciao1" species:7245 "Drosophila yakuba"
[GO:0016226 "iron-sulfur cluster assembly" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0016226 EMBL:CM000158 OrthoDB:EOG45DV4X RefSeq:XP_002091367.1
ProteinModelPortal:B4P7Q3 STRING:B4P7Q3 EnsemblMetazoa:FBtr0258798
GeneID:6530451 KEGG:dya:Dyak_GE12280 FlyBase:FBgn0230036
Uniprot:B4P7Q3
Length = 335
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 72/290 (24%), Positives = 119/290 (41%)
Query: 98 HNGKVAWDVKWKPYNAVDCKC-KQRLGYLAVLLGN--GSLEVWEVPLLRTMKAI------ 148
H G++ W V W P V C + + + L GN + + RT++ I
Sbjct: 13 HKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGNTWSTKTILSDGHKRTIREIQWSPCG 71
Query: 149 -YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTV 205
YL+S + T + K F C+ G + ++ WS S LLA C D +V
Sbjct: 72 QYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSRDKSV 127
Query: 206 ALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRD 265
+W+ VA D + +L ++ T ++ V W P + SA+ T +K + +
Sbjct: 128 WIWE-VAGDDEFECAAVL--NSHTQDVKRVVWHPTKEILASASYDNT-----IKMY-AEE 178
Query: 266 PFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321
P WD + I+G+D+ D ++ DD ++I AY P A
Sbjct: 179 PIDNDWDCTATLTSHTSTIWGIDFDADGERLVSCSDDTTVKIWR----AYH-PGNSAGVA 233
Query: 322 GTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366
QQ + C+ S AI+ V +LTG++A D + F+ T+
Sbjct: 234 TPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETS 283
>UNIPROTKB|H3BRY3 [details] [associations]
symbol:CORO1A "Coronin" species:9606 "Homo sapiens"
[GO:0005884 "actin filament" evidence=IEA] [GO:0051015 "actin
filament binding" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 Gene3D:2.130.10.10 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR015505 InterPro:IPR015048
InterPro:IPR015049 PANTHER:PTHR10856 Pfam:PF08953 Pfam:PF08954
HGNC:HGNC:2252 EMBL:AC012645 ProteinModelPortal:H3BRY3 SMR:H3BRY3
Ensembl:ENST00000565497 Bgee:H3BRY3 Uniprot:H3BRY3
Length = 389
Score = 122 (48.0 bits), Expect = 0.00022, P = 0.00022
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ + R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W + + NV+L+AG + WD+ L ++HP IY +DW D
Sbjct: 135 GIVAW-----HTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDT--IYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
G + S D +RI+ K V +P GT+
Sbjct: 188 GGLICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222
>UNIPROTKB|P31146 [details] [associations]
symbol:CORO1A "Coronin-1A" species:9606 "Homo sapiens"
[GO:0001772 "immunological synapse" evidence=IEA] [GO:0006816
"calcium ion transport" evidence=IEA] [GO:0007015 "actin filament
organization" evidence=IEA] [GO:0030335 "positive regulation of
cell migration" evidence=IEA] [GO:0030833 "regulation of actin
filament polymerization" evidence=IEA] [GO:0034097 "response to
cytokine stimulus" evidence=IEA] [GO:0042102 "positive regulation
of T cell proliferation" evidence=IEA] [GO:0043029 "T cell
homeostasis" evidence=IEA] [GO:0048873 "homeostasis of number of
cells within a tissue" evidence=IEA] [GO:0030670 "phagocytic
vesicle membrane" evidence=IEA] [GO:0008360 "regulation of cell
shape" evidence=IBA] [GO:0030595 "leukocyte chemotaxis"
evidence=IBA] [GO:0032796 "uropod organization" evidence=IBA]
[GO:0008092 "cytoskeletal protein binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0043548
"phosphatidylinositol 3-kinase binding" evidence=IDA] [GO:0043234
"protein complex" evidence=IDA] [GO:0006909 "phagocytosis"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0006928 "cellular component movement"
evidence=NAS] [GO:0030036 "actin cytoskeleton organization"
evidence=IMP] [GO:0031589 "cell-substrate adhesion" evidence=IMP]
[GO:0051126 "negative regulation of actin nucleation" evidence=IDA]
[GO:0001845 "phagolysosome assembly" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0045087 "innate immune response" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001891 "phagocytic cup"
evidence=IDA] [GO:0030027 "lamellipodium" evidence=IDA] [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0050918 "positive
chemotaxis" evidence=IDA] [GO:0030864 "cortical actin cytoskeleton"
evidence=IDA] [GO:0005884 "actin filament" evidence=IDA]
[GO:0051015 "actin filament binding" evidence=IDA] [GO:0042803
"protein homodimerization activity" evidence=IDA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0042803 GO:GO:0045335 GO:GO:0030670 GO:GO:0007015
Gene3D:2.130.10.10 PROSITE:PS00678 GO:GO:0008360 InterPro:IPR019775
GO:GO:0030036 eggNOG:COG2319 GO:GO:0034097 GO:GO:0045087
GO:GO:0051015 GO:GO:0005884 GO:GO:0030027 GO:GO:0006816
GO:GO:0001891 GO:GO:0030864 GO:GO:0030335 GO:GO:0048873
GO:GO:0042102 EMBL:CH471238 GO:GO:0031589 GO:GO:0050918
GO:GO:0043029 GO:GO:0030833 GO:GO:0001772 GO:GO:0030595
GO:GO:0051126 GO:GO:0001845 CTD:11151 HOGENOM:HOG000166356
HOVERGEN:HBG059978 KO:K13882 OMA:FMALICE OrthoDB:EOG4RNB8C
GO:GO:0032796 InterPro:IPR015505 InterPro:IPR015048
InterPro:IPR015049 PANTHER:PTHR10856 Pfam:PF08953 Pfam:PF08954
EMBL:D44497 EMBL:X89109 EMBL:U34690 EMBL:AF495470 EMBL:AK314714
EMBL:BC110374 EMBL:BC126385 EMBL:BC126387 IPI:IPI00010133
PIR:S65665 RefSeq:NP_001180262.1 RefSeq:NP_009005.1
UniGene:Hs.415067 ProteinModelPortal:P31146 SMR:P31146
IntAct:P31146 STRING:P31146 PhosphoSite:P31146 DMDM:1706004
OGP:P31146 UCD-2DPAGE:P31146 PaxDb:P31146 PeptideAtlas:P31146
PRIDE:P31146 DNASU:11151 Ensembl:ENST00000219150
Ensembl:ENST00000570045 GeneID:11151 KEGG:hsa:11151 UCSC:uc002dww.3
GeneCards:GC16P030194 HGNC:HGNC:2252 HPA:CAB046473 HPA:HPA051132
MIM:605000 neXtProt:NX_P31146 Orphanet:228003 PharmGKB:PA26768
InParanoid:P31146 PhylomeDB:P31146 GenomeRNAi:11151 NextBio:42396
Bgee:P31146 CleanEx:HS_CORO1A Genevestigator:P31146
GermOnline:ENSG00000102879 GO:GO:0043548 Uniprot:P31146
Length = 461
Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
Identities = 43/156 (27%), Positives = 69/156 (44%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ + R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W + + NV+L+AG + WD+ L ++HP IY +DW D
Sbjct: 135 GIVAW-----HTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDT--IYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
G + S D +RI+ K V +P GT+
Sbjct: 188 GGLICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222
>UNIPROTKB|B4QFZ8 [details] [associations]
symbol:Ciao1 "Probable cytosolic iron-sulfur protein
assembly protein Ciao1" species:7240 "Drosophila simulans"
[GO:0016226 "iron-sulfur cluster assembly" evidence=ISS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0016226
EMBL:CM000362 OrthoDB:EOG45DV4X RefSeq:XP_002081558.1
UniGene:Dsi.12266 ProteinModelPortal:B4QFZ8
EnsemblMetazoa:FBtr0225561 GeneID:6734549 KEGG:dsi:Dsim_GD25651
FlyBase:FBgn0196936 Uniprot:B4QFZ8
Length = 335
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 70/291 (24%), Positives = 121/291 (41%)
Query: 98 HNGKVAWDVKWKPYNAVDCKC-KQRLGYLAVLLGN--GSLEVWEVPLLRTMKAI------ 148
H G++ W V W P V C + + + L GN + + RT++ I
Sbjct: 13 HKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGNTWSTKTILSDGHKRTIREIRWSPCG 71
Query: 149 -YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTV 205
YL+S + T + K F C+ G + ++ WS S LLA C D +V
Sbjct: 72 QYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSRDKSV 127
Query: 206 ALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR 264
+W+ VA D + +L + T ++ V W P + +V+ +A + +K +
Sbjct: 128 WIWE-VAGDDEFECAAVL--NPHTQDVKRVVWHPTK------DVLASASYDNTIKMF-AE 177
Query: 265 DPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320
+P WD + ++G+D+ D ++ DD ++I AY P
Sbjct: 178 EPIDNDWDCTATLTSHTSTVWGIDFDADGERLVSCSDDTTIKIWK----AYH-PGNTAGV 232
Query: 321 AGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366
A +QQ + C+ S AI+ V +LTG++A D + F+ T+
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETS 283
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 568 539 0.00094 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 631 (67 KB)
Total size of DFA: 353 KB (2173 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 45.95u 0.11s 46.06t Elapsed: 00:00:03
Total cpu time: 45.96u 0.11s 46.07t Elapsed: 00:00:03
Start: Tue May 21 01:30:07 2013 End: Tue May 21 01:30:10 2013