BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008363
         (568 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
          Length = 402

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 19/181 (10%)

Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
           L CG T  + L + W   P +D ++A G  D TV +W+       +  R P++     T 
Sbjct: 76  LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132

Query: 231 PIRAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
            +  V+W P      + NV+L+AG    +  WD+      L    D+HP    IY +DW 
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWS 185

Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
            D   +  S  D  +R++   K    V    +P  GT+   +H V  S   I +   SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRM 242

Query: 347 T 347
           +
Sbjct: 243 S 243


>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
          Length = 402

 Score = 42.0 bits (97), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 18/171 (10%)

Query: 183 LTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPIRAVSWAPA 240
           L + W   P +D ++A G  D TV +W+       +  R P++     T  +  V+W P 
Sbjct: 85  LDIAWX--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT 142

Query: 241 ESDSDSANVILTAGHGGLKF-WDIRDPFRPLW---DIHPAPKFIYGLDWLPDPGCVILSF 296
                + NV+L+AG   +   WD+      L    D+HP    IY +DW  D   +  S 
Sbjct: 143 -----AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWSRDGALICTSC 195

Query: 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347
            D  +R++   K    V    +P  GT+   +H V  S   I +   SR++
Sbjct: 196 RDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRMS 243


>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum
 pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
 pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
           Parasitic Nematode Ascaris Suum With The Specific
           Inhibitor Flutolanil And Substrate Fumarate
          Length = 645

 Score = 28.9 bits (63), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 344 SRLTGMVAYCSADGTVHRFQ 363
            R  G++A C  DGT+HRF+
Sbjct: 209 GRCVGVIALCLEDGTIHRFR 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,041,927
Number of Sequences: 62578
Number of extensions: 706930
Number of successful extensions: 1162
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 9
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)