BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008363
(568 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2 OS=Mus musculus
GN=Gtf3c2 PE=1 SV=2
Length = 907
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 143/385 (37%), Gaps = 88/385 (22%)
Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
L++ W + PH +L AG ++G V W + SD S+ P CF A +R
Sbjct: 554 LSLAWMPTRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 613
Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
+ W A S + +++AG +KFWD+R P+ P+ I +F+ L WL
Sbjct: 614 TIQWCKANS-----HFLVSAGSDRKIKFWDLRRPYEPINCIK---RFLSTELSWLLPYNG 665
Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
V ++ D+ A+Y + AG + +WS+ S G VA
Sbjct: 666 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVA 717
Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
G + A+ D + N I V P + P+ K
Sbjct: 718 AGDISGEL------IAAILPDMASN---------------PINVKKPAERR-FPIYKADL 755
Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
+ S S SS++PN K + + N L D L++ N
Sbjct: 756 IPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQ----------DTDLSSFHNL 805
Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
+++P R +E + + +C+D ++ A+H+VR+
Sbjct: 806 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 838
Query: 530 NMNKGSERWLCYGGAGGIIRCQEIR 554
+ N S WL GG G++R +R
Sbjct: 839 SPNLDSYGWLVSGGQSGLVRIHFVR 863
>sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2 OS=Homo sapiens
GN=GTF3C2 PE=1 SV=2
Length = 911
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/398 (21%), Positives = 147/398 (36%), Gaps = 90/398 (22%)
Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
L++ W + PH +L AG ++G V W + SD S+ P CF A +R
Sbjct: 558 LSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 617
Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
+ W A S + +++AG +KFWD+R P+ P+ I +F+ L WL
Sbjct: 618 TLQWCKANS-----HFLVSAGSDRKIKFWDLRRPYEPINSIK---RFLSTELAWLLPYNG 669
Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
V ++ D+ A+Y + AG + +WS+ S G +A
Sbjct: 670 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIA 721
Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
G + A+ D + N I V P++ P+ K
Sbjct: 722 AGDISGEL------IAAILPDMALN---------------PINVKRPVERR-FPIYKADL 759
Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
+ S S SS PN K + + N L D L + +
Sbjct: 760 IPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQ----------DTDLGSFHDL 809
Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
+++P R +E + + +C+D ++ A+H+VR+
Sbjct: 810 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 842
Query: 530 NMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQ 567
+ N S WL GG G++R +R + +G ++Q
Sbjct: 843 SPNLDSYGWLVSGGQSGLVRIHFVR--GLASPLGHRMQ 878
>sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2 OS=Pongo abelii
GN=GTF3C2 PE=2 SV=1
Length = 911
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/398 (21%), Positives = 146/398 (36%), Gaps = 90/398 (22%)
Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
L++ W + PH +L AG ++G V W + SD S+ P CF A +R
Sbjct: 558 LSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 617
Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
+ W A S + + +AG +KFWD+R P+ P+ I +F+ L WL
Sbjct: 618 TLQWCKANS-----HFLASAGSDRKIKFWDLRRPYEPINSIK---RFLSTELAWLLPYNG 669
Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
V ++ D+ A+Y + AG + +WS+ S G +A
Sbjct: 670 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIA 721
Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
G + A+ D + N I V P++ P+ K
Sbjct: 722 AGDISGEL------IAAILPDMALN---------------PINVKRPVERR-FPIYKADL 759
Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
+ S S SS PN K + + N L D L + +
Sbjct: 760 IPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQ----------DTDLGSFHDL 809
Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
+++P R +E + + +C+D ++ A+H+VR+
Sbjct: 810 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 842
Query: 530 NMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQ 567
+ N S WL GG G++R +R + +G ++Q
Sbjct: 843 SPNLDSYGWLVSGGQSGLVRIHFVR--GLASPLGHRMQ 878
>sp|O89053|COR1A_MOUSE Coronin-1A OS=Mus musculus GN=Coro1a PE=1 SV=5
Length = 461
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
L CG T + L + W P +D ++A G D TV +W+ + R P++ T
Sbjct: 76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
+ V+W P + NV+L+AG + WD+ L D+HP IY +DW
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
D + S D +R++ K V +P GT+ +H V S I + SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRM 242
Query: 347 T 347
+
Sbjct: 243 S 243
>sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum
GN=wdr24 PE=3 SV=1
Length = 1023
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253
D +L G D T+ +W DS+ S+ + FS + IR V + P++++ +A
Sbjct: 130 DCILTGSQDNTLRMWDI--RDSANASK--ITFSPKSESIRDVQFNPSQANQFAA----AF 181
Query: 254 GHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRI 303
+G ++ WDIR P + I + +DW P+ +I S D A+R+
Sbjct: 182 DNGTIQLWDIRKPTIAVEKITSHQGLVLTIDWHPEEKNIIASGGRDRAIRV 232
>sp|Q91ZN1|COR1A_RAT Coronin-1A OS=Rattus norvegicus GN=Coro1a PE=1 SV=3
Length = 461
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
L CG T + L + W P +D ++A G D TV +W+ + R P++ T
Sbjct: 76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVVTLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
+ V+W P + NV+L+AG + WD+ L D+HP IY +DW
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
D + S D +R++ K V +P GT+ +H V S I + SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKERPHEGTRP--VHAVFVSEGKILTTGFSRM 242
Query: 347 T 347
+
Sbjct: 243 S 243
>sp|O14186|YDSB_SCHPO Uncharacterized WD repeat-containing protein C4F8.11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F8.11 PE=4 SV=1
Length = 846
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 18/143 (12%)
Query: 147 AIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTV 205
A Y S + + D RF KL LK + L + +S P+ LA C D T+
Sbjct: 195 AAYDSGILQKWDIRFPKLP------FLKLAAHNGVVLCVNYS---PNGVFLASCGRDKTI 245
Query: 206 ALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA---GHGGLKFWD 262
+W DS+ + + L + P+ V W PA S +N + ++ G + WD
Sbjct: 246 RIW-----DSTSNKKKSLITINNVSPLNCVRWRPANQQSRGSNQLASSSLVGDTAINVWD 300
Query: 263 IRDPFRPLWDIHPAPKFIYGLDW 285
I P+ P + + + W
Sbjct: 301 ITRPYIPYRTVSCHDSIVSTMHW 323
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254
Y+L DG + LW + S S+I F ++ R V ++P+E + +
Sbjct: 149 YVLTASQDGLIKLWDYKESSSTI------TFRGNSEAARDVVFSPSEPNE----FVAAYD 198
Query: 255 HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI 303
G L+ WDIR P P + + +++ P+ + D +RI
Sbjct: 199 SGILQKWDIRFPKLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRI 247
>sp|B3NQR5|CIAO1_DROER Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila erecta GN=Ciao1 PE=3 SV=1
Length = 335
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 119/296 (40%), Gaps = 46/296 (15%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL------RTMKAI-- 148
H G++ W V W P V C + A+ + + + W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDK---AIRIWSLTGSTWSTKTILSDGHKRTIREIRW 67
Query: 149 -----YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-H 201
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 68 SPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSR 123
Query: 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261
D +V +W+ VA D + +L ++ T ++ V W P + V+ +A +
Sbjct: 124 DKSVWIWE-VAGDDEFECAAVL--NSHTQDVKRVVWHPTK------EVLASASYDNTIKM 174
Query: 262 DIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317
DP WD + I+G+D+ D ++ DD ++I KA + P
Sbjct: 175 YAEDPVDNDWDCTATLTSHTSTIWGIDFDADGERLVSCSDDTTIKI---WKAYH--PGNS 229
Query: 318 KPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368
A QQ + C+ S AI+ V +LTG++A D + F+ T+ +
Sbjct: 230 AGVATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDS 285
>sp|Q4R4J2|COR1A_MACFA Coronin-1A OS=Macaca fascicularis GN=CORO1A PE=2 SV=3
Length = 461
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ + R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W P + NV+L+AG + WD+ L ++HP IY +DW D
Sbjct: 135 GIVAWHPT-----AQNVLLSAGCDNVIMVWDVGTGAAVLTLGPEVHP--DTIYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347
G + S D +RI+ K V +P GT+ + V S I + SR++
Sbjct: 188 GGLICTSCRDKRVRIIEPRKCTV-VAEKDRPHEGTRP--VRAVFVSEGKILTTGFSRMS 243
>sp|Q92176|COR1A_BOVIN Coronin-1A OS=Bos taurus GN=CORO1A PE=1 SV=3
Length = 461
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
+ CG T + L + W P +D ++A G D +V +W+ ++ R P++ T
Sbjct: 76 MVCGHTAPV-LDIAWC--PHNDNVIASGSEDCSVMVWEIPDGGLTLPLREPVVTLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
+ V+W P + NV+L+AG + WD+ L D+HP IY +DW
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGVAVLTLGSDVHP--DTIYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
D + S D +RI+ K V +P GT+ + V S I + SR+
Sbjct: 186 RDGALICTSCRDKRVRIIEPRKGTI-VAEKDRPHEGTRP--VRAVFVSDGKILTTGFSRM 242
Query: 347 T 347
+
Sbjct: 243 S 243
>sp|B4P7Q3|CIAO1_DROYA Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1
Length = 335
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 118/297 (39%), Gaps = 48/297 (16%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQ-RLGYLAVLLGNGSLEVWEVPLL------RTMKAI- 148
H G++ W V W P V C + + + L GN W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGN----TWSTKTILSDGHKRTIREIQ 66
Query: 149 ------YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC- 200
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 67 WSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCS 122
Query: 201 HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKF 260
D +V +W+ VA D + +L ++ T ++ V W P + ++ +A +
Sbjct: 123 RDKSVWIWE-VAGDDEFECAAVL--NSHTQDVKRVVWHPTK------EILASASYDNTIK 173
Query: 261 WDIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316
+P WD + I+G+D+ D ++ DD ++I AY P
Sbjct: 174 MYAEEPIDNDWDCTATLTSHTSTIWGIDFDADGERLVSCSDDTTVKIWR----AYH-PGN 228
Query: 317 GKPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368
A QQ + C+ S AI+ V +LTG++A D + F+ T+ +
Sbjct: 229 SAGVATPDQQTVWKCVCTLSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDS 285
>sp|B4QFZ8|CIAO1_DROSI Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila simulans GN=Ciao1 PE=3 SV=1
Length = 335
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 120/297 (40%), Gaps = 48/297 (16%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQ-RLGYLAVLLGNGSLEVWEVPLL------RTMKAI- 148
H G++ W V W P V C + + + L GN W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGN----TWSTKTILSDGHKRTIREIR 66
Query: 149 ------YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC- 200
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 67 WSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCS 122
Query: 201 HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKF 260
D +V +W+ VA D + +L + T ++ V W P + +V+ +A +
Sbjct: 123 RDKSVWIWE-VAGDDEFECAAVL--NPHTQDVKRVVWHPTK------DVLASASYDNTIK 173
Query: 261 WDIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316
+P WD + ++G+D+ D ++ DD ++I KA + P
Sbjct: 174 MFAEEPIDNDWDCTATLTSHTSTVWGIDFDADGERLVSCSDDTTIKI---WKAYH--PGN 228
Query: 317 GKPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368
A +QQ + C+ S AI+ V +LTG++A D + F+ T+ +
Sbjct: 229 TAGVATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDS 285
>sp|B4HRQ6|CIAO1_DROSE Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila sechellia GN=Ciao1 PE=3 SV=1
Length = 335
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 40/293 (13%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQ-RLGYLAVLLGN--GSLEVWEVPLLRTMKAI----- 148
H G++ W V W P V C + + + L GN G+ + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGNTWGTKTILSDGHKRTIREIRWSPC 70
Query: 149 --YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGT 204
YL+S + T + K F C+ G + ++ WS S LLA C D +
Sbjct: 71 GQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSRDKS 126
Query: 205 VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIR 264
V +W+ VA D + +L + T ++ V W P + +V+ +A +
Sbjct: 127 VWIWE-VAGDDEFECAAVL--NPHTQDVKRVVWHPTK------DVLASASYDNTIKMFAE 177
Query: 265 DPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320
+P WD + ++G+D+ D ++ DD ++I AY P
Sbjct: 178 EPIDNDWDCTATLTSHTSTVWGIDFDADGERLVSCSDDTTIKIWR----AYH-PGNTAGV 232
Query: 321 AGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368
A +QQ + C+ S AI+ V +LTG++A D + F+ T+ +
Sbjct: 233 ATPEQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFKETSDS 285
>sp|P31146|COR1A_HUMAN Coronin-1A OS=Homo sapiens GN=CORO1A PE=1 SV=4
Length = 461
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
CG T + L + W P +D ++A G D TV +W+ + R P++ T +
Sbjct: 78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGHTKRV 134
Query: 233 RAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
V+W + + NV+L+AG + WD+ L ++HP IY +DW D
Sbjct: 135 GIVAW-----HTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHP--DTIYSVDWSRD 187
Query: 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347
G + S D +RI+ K V +P GT+ + V S I + SR++
Sbjct: 188 GGLICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTRP--VRAVFVSEGKILTTGFSRMS 243
>sp|Q9D2V7|CORO7_MOUSE Coronin-7 OS=Mus musculus GN=Coro7 PE=2 SV=2
Length = 922
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 183 LTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241
L + SP D+LLA G D T+ LW+ + ++ S P + + LP+ + + P
Sbjct: 79 LVTDLDFSPFDDFLLASGSADRTIKLWRLSGTGEALPSVPGVVLGPEELPVEVLQFHPTV 138
Query: 242 SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM 301
V+++ +K WD+ +PL ++ + W D V + D +
Sbjct: 139 D-----GVLVSTAGKTVKVWDVAKQ-QPLTELEAHKDLVQSAVWSRDGAIVGTACKDKQL 192
Query: 302 RI 303
RI
Sbjct: 193 RI 194
>sp|P39706|SWD1_YEAST COMPASS component SWD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SWD1 PE=1 SV=1
Length = 426
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-----PIRAVSWAPAESDS 244
SP DYL GC +G + ++ +D+ +C + L PI +++W+P
Sbjct: 35 SPCGDYLALGCANGALVIY-------DMDTFRPICVPGNMLGAHVRPITSIAWSP----- 82
Query: 245 DSANVILTAGHGGLKFWDIRDPFRPLWDIH-PAPKFIYGLDWLPDPG--CVILSFDDGAM 301
D ++ ++ +K WD+ P +PL +I +P I+G WL CV F++
Sbjct: 83 DGRLLLTSSRDWSIKLWDLSKPSKPLKEIRFDSP--IWGCQWLDAKRRLCVATIFEESDA 140
Query: 302 RIVSL 306
++
Sbjct: 141 YVIDF 145
>sp|P57737|CORO7_HUMAN Coronin-7 OS=Homo sapiens GN=CORO7 PE=1 SV=2
Length = 925
Score = 39.3 bits (90), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 183 LTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241
L + SP D+LLA G D TV LW+ ++ S P + + LP+ + + P
Sbjct: 79 LVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDLPVEVLQFHPT- 137
Query: 242 SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM 301
S ++++A +K WD +PL ++ + W D V + D +
Sbjct: 138 ----SDGILVSAAGTTVKVWDAAKQ-QPLTELAAHGDLVQSAVWSRDGALVGTACKDKQL 192
Query: 302 RI 303
RI
Sbjct: 193 RI 194
>sp|Q5RBW3|CORO7_PONAB Coronin-7 OS=Pongo abelii GN=CORO7 PE=2 SV=1
Length = 925
Score = 38.9 bits (89), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 183 LTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241
L + SP D+LLA G D TV LW+ ++ S P + + LP+ + + P
Sbjct: 79 LVTDLDFSPFDDFLLATGSADRTVKLWRLPGPGQALPSAPGVVLGPEDLPVEVLQFHPT- 137
Query: 242 SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM 301
S ++++A +K WD +PL ++ + W D V + D +
Sbjct: 138 ----SDGILVSAAGTTVKVWDAAKQ-QPLTELEAHGDLVQSAVWSRDGALVGTACKDKQL 192
Query: 302 RI 303
RI
Sbjct: 193 RI 194
>sp|Q6BXX5|RTC1_DEBHA Restriction of telomere capping protein 1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=RTC1 PE=3 SV=2
Length = 1386
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 188 STSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSD 245
++S P+ L++G DGT+ LW S ++P L S+++ P+R+ ++P + +
Sbjct: 198 NSSSPYQ-LISGSQDGTIKLWDL----RSASNKPTLTISSNSHSDPVRSCQYSPHSTVRN 252
Query: 246 SANVILTAGHGGLKFWDIRDPF----------RPLWDIHPAPKFIYGLDWLPDPGCVI 293
++ G L +D+R P W+ H P L+ P+ VI
Sbjct: 253 KLTILSVHDSGALCKYDLRSPNGGYQHNINVPERKWNFHTGPAL--SLNIHPEKEYVI 308
>sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium
discoideum GN=grwd1 PE=3 SV=1
Length = 482
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255
L++GC DG+ +W A D+ P+ F T PI ++ W P E + VI+++
Sbjct: 355 LVSGCDDGSFRVWDLRAFK---DNSPVSDFKYHTGPITSIEWNPYE----ESQVIVSSSD 407
Query: 256 GGLKFWDI 263
+ WD
Sbjct: 408 DQVTIWDF 415
>sp|C5MIB1|RTC1_CANTT Restriction of telomere capping protein 1 OS=Candida tropicalis
(strain ATCC MYA-3404 / T1) GN=RTC1 PE=3 SV=1
Length = 1110
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVILTA 253
LL+G DGT+ LW +S S+P + A + PIRA ++P S + V+
Sbjct: 194 LLSGSQDGTIKLWDLRSS----SSKPSITIQASMRSDPIRACQYSPHSSVKNKMCVLSVH 249
Query: 254 GHGGLKFWDIR------DPFRP--LWDIHPAP 277
G L +D+R + + P W++H P
Sbjct: 250 DSGALCKFDLRSTGGNGNIYSPEKKWNLHTGP 281
>sp|Q7K1Y4|CIAO1_DROME Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila melanogaster GN=Ciao1 PE=1 SV=1
Length = 335
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 115/292 (39%), Gaps = 48/292 (16%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQ-RLGYLAVLLGNGSLEVWEVPLL------RTMKAI- 148
H G++ W V W P V C + + + L GN W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDKAIRIWSLTGN----TWSTKTILSDGHKRTIREIR 66
Query: 149 ------YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC- 200
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 67 WSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCS 122
Query: 201 HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKF 260
D +V +W+ VA D + +L + T ++ V W P + +++ +A +
Sbjct: 123 RDKSVWIWE-VAGDDEFECAAVL--NPHTQDVKRVVWHPTK------DILASASYDNTIK 173
Query: 261 WDIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316
+P WD + ++G+D+ D ++ DD ++I AY P
Sbjct: 174 MFAEEPIDNDWDCTATLTSHTSTVWGIDFDADGERLVSCSDDTTIKIWR----AYH-PGN 228
Query: 317 GKPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363
A QQ + C+ S AI+ V +LTG++A D + F+
Sbjct: 229 TAGVATPDQQTVWKCVCTVSGQHSRAIYDVSWCKLTGLIATACGDDGIRIFK 280
>sp|C4YN69|RTC1_CANAW Restriction of telomere capping protein 1 OS=Candida albicans
(strain WO-1) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 15/121 (12%)
Query: 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVIL 251
+ LL+G DGT+ LW +S ++P++ A+ + PIRA ++P + + V+
Sbjct: 191 NQLLSGSQDGTIKLWDLRSS----STKPVMTVQANLHSDPIRACQYSPHSAVRNKICVLS 246
Query: 252 TAGHGGLKFWDIRDP-----FRP--LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304
G L +D+R + P W++H P L P+ V+ D + I
Sbjct: 247 VHDSGALCKFDLRTKSGGKVYSPEKKWNLHTGPAL--SLHIHPEKELVVTGGRDKRISIF 304
Query: 305 S 305
+
Sbjct: 305 N 305
>sp|A3GIA4|RTC1_PICST Restriction of telomere capping protein 1 OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=RTC1 PE=3 SV=2
Length = 1105
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 113/301 (37%), Gaps = 60/301 (19%)
Query: 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVI--- 250
+++G DG++ LW +S RP+L S+ + PIR+ ++P + V+
Sbjct: 201 MISGSQDGSIKLWDMRSS----SPRPMLTISSGSHSDPIRSCQYSPHSQGRNKLVVLSVH 256
Query: 251 -----------LTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG 299
L+ GHG + W+I P +H P+ Y + D + ++ D
Sbjct: 257 DSGALCKFDLRLSNGHGPERKWNIHTG--PALSLHIHPEKEYVVTGGRDQKICVFNYGDS 314
Query: 300 AM-------RIVSLLKAAYDVPATGKPFAGTKQQGLHL--------VNCSSFAIWSVQVS 344
+ +++ V P A T Q G L N SS + + S
Sbjct: 315 QISNRITPDEMINTYGPVMKVRWCLYPDASTSQFGEPLDTFQQSNDFNSSSLYSYDLACS 374
Query: 345 RLTGMVAYCSADGTVHRFQLTAKAVEKD---HSRNRPMHFLCGSVTEDESAITVNTPLDN 401
Y + D TV + L K + K+ S N+P+ ++ I N P +
Sbjct: 375 -------YLNDDSTVAIYNLNRKFIPKEVITTSSNKPI----------QNFIWANNPGSS 417
Query: 402 TPV--PLKKTVHDAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEES 459
+ K V + + M L+ES SK P D+ + +N LC N+ E
Sbjct: 418 RKIWTITKSNVFSSYDLDMHDSLLESEISK-PLDELANVTVDWNNGFGDLCLANQEKYEF 476
Query: 460 E 460
E
Sbjct: 477 E 477
>sp|Q5ACL4|RTC1_CANAL Restriction of telomere capping protein 1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=RTC1 PE=3 SV=1
Length = 1088
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVILTA 253
LL+G DGT+ LW +S ++P++ A+ + PIRA ++P + + V+
Sbjct: 193 LLSGSQDGTIKLWDLRSS----STKPVMTVQANLHSDPIRACQYSPHSAVRNKICVLSVH 248
Query: 254 GHGGLKFWDIRDP-----FRP--LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305
G L +D+R + P W++H P L P+ V+ D + I +
Sbjct: 249 DSGALCKFDLRTKSGGKVYSPEKKWNLHTGPAL--SLHIHPEKELVVTGGRDKRISIFN 305
>sp|Q58D20|NLE1_BOVIN Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=3
Length = 486
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 149 YLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW 208
YL+S T RF L C G + L++ WS P L +GC +G + LW
Sbjct: 129 YLASGSGDTTVRFWDLST--ETPHFTCQGHRHWVLSISWS--PDGKKLASGCKNGQILLW 184
Query: 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262
D S + + + I A+SW P ++ + V ++ G ++ WD
Sbjct: 185 -----DPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWD 233
>sp|Q5RFF8|NLE1_PONAB Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3
Length = 485
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 149 YLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW 208
YL+S T RF L C G + L++ WS P L +GC +G + LW
Sbjct: 128 YLASGSGDTTVRFWDLST--ETPHFTCKGHRHWVLSISWS--PDGKKLASGCKNGQILLW 183
Query: 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262
D S + + + I +SW P ++ + V ++ G ++ WD
Sbjct: 184 -----DPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWD 232
>sp|Q55CT5|SEC31_DICDI Protein transport protein SEC31 OS=Dictyostelium discoideum
GN=sec31 PE=3 SV=1
Length = 1355
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 196 LLAGCHDGTVALWKFVASDS--SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253
L + ++G + +W + + +I+ R C R++ W P+E A I+ A
Sbjct: 193 LGSASYNGYIVIWDLKSKKTLMTINDRNRKC------KYRSIVWHPSE-----ATQIVAA 241
Query: 254 G----HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS 295
H ++ WD+R+ P+ + K ++GL W P ++LS
Sbjct: 242 SEDDDHPVIQAWDLRNTTSPVKSMEGHKKGVWGLSWCPSDNALLLS 287
>sp|Q9NVX2|NLE1_HUMAN Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=4
Length = 485
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 149 YLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW 208
YL+S T RF L C G + L++ WS P L +GC +G + LW
Sbjct: 128 YLASGSGDTTVRFWDLST--ETPHFTCKGHRHWVLSISWS--PDGRKLASGCKNGQILLW 183
Query: 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262
D S + + + I +SW P ++ + V ++ G ++ WD
Sbjct: 184 -----DPSTGKQVGRTLAGHSKWITGLSWEPLHANPECRYVASSSKDGSVRIWD 232
>sp|O16519|GAD1_CAEEL Gastrulation defective protein 1 OS=Caenorhabditis elegans GN=gad-1
PE=1 SV=1
Length = 620
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
SP ++ AGC DG+V WK+ + +++ L A I +++++P DS +
Sbjct: 289 SPDGKWIAAGCDDGSVQAWKYGSQYVNVN---YLVRKAHNGSITSIAFSP-----DSKRL 340
Query: 250 ILTAGHGGLKFWDIRDPFRPL 270
+ LK W + +P PL
Sbjct: 341 LSRGFDDTLKMWSLDNPKEPL 361
>sp|Q5ZLG9|WDR59_CHICK WD repeat-containing protein 59 OS=Gallus gallus GN=WDR59 PE=2 SV=1
Length = 973
Score = 36.2 bits (82), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT 229
C+ L+ G T+ I ++WS P D L+ D + +W D +P + SA
Sbjct: 98 CTSLQ-GHTRVIS-DLDWSVFEP-DLLVTSSVDTYIYIW-----DIKDTRKPTVSLSA-V 148
Query: 230 LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD 288
V W + +AN + T+ G ++ WD R P + + I+GLDW PD
Sbjct: 149 AGASQVKW-----NKKNANCLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPD 202
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 35.8 bits (81), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 72/190 (37%), Gaps = 44/190 (23%)
Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSAN 248
SP +L++G DG++ALW F SR L + I A S+ P
Sbjct: 106 SPDSSHLVSGGSDGSIALWDFT-------SRTLRRTGVVNDTSIVACSFTPC-----GQM 153
Query: 249 VILTAGHGGLKFWDIR-DPFRPLWDIHP--------APKFIYGLDWLPDPGCVILSF--- 296
I + +G L+ WD+ + + H APK + G D GCV
Sbjct: 154 FITGSTYGDLRLWDLNMNHLHAEKNAHDLGVSCAQFAPKMMKGTD-----GCVQFRLASC 208
Query: 297 -DDGAMR--IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC 353
D ++ IVSLL P AG K Q H + S + S S M+
Sbjct: 209 GQDSLLKIWIVSLL-----------PSAGIKMQLAHTLTGQSAPVLSCAYSPDGQMLVSG 257
Query: 354 SADGTVHRFQ 363
S D TV +Q
Sbjct: 258 SVDKTVTVYQ 267
>sp|A5E6M3|RTC1_LODEL Restriction of telomere capping protein 1 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=RTC1 PE=3 SV=1
Length = 1163
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVIL 251
D++++G DG++ LW AS ++P+ A+ PIRA ++P + ++
Sbjct: 190 DHIISGSQDGSIKLWDLRAS----PTKPVFNLQANLHNDPIRACQYSPHSVVRNKTCILS 245
Query: 252 TAGHGGLKFWDIR-----DPFRP--LWDIHPAP 277
G L +D+R + + P W++H P
Sbjct: 246 VHDSGALCKFDLRSGSGSNMYSPDRKWNLHAGP 278
>sp|Q8VEJ4|NLE1_MOUSE Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=4
Length = 485
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 149 YLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW 208
YL+S T RF L C G + L++ WS P L +GC +G V LW
Sbjct: 128 YLASGSGDTTVRFWDLST--ETPHFTCKGHRHWVLSISWS--PDGKKLASGCKNGQVLLW 183
Query: 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262
D S + + + I +SW P + + V ++ G ++ WD
Sbjct: 184 -----DPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWD 232
>sp|Q54NG9|SCPDH_DICDI Probable saccharopine dehydrogenase [NADP(+), L-glutamate-forming]
OS=Dictyostelium discoideum GN=sdh PE=2 SV=1
Length = 480
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 356 DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPL-KKTVHDAG 414
DG F + + +EKD G ++ DE + NTP+D+ L KK + AG
Sbjct: 326 DGLQFHFPIIPRDIEKDVQHAVEGFKWLGLLSADEKVVNKNTPIDSLCALLEKKLSYKAG 385
Query: 415 ERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYG 452
ER + ++E N D+ K V S +CYG
Sbjct: 386 ERDV--VVLEHNFVVQYADRTEKEVSS------LICYG 415
>sp|O60174|SFC6_SCHPO Transcription factor tau subunit sfc6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sfc6 PE=1 SV=1
Length = 582
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 68/184 (36%), Gaps = 37/184 (20%)
Query: 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM 153
L H+ ++W P +V+ LG+LAV+ +G L V VP +
Sbjct: 264 FILYHDWGSVLQLEWCPTISVE---DSILGFLAVVCSDGKLRVLRVP----RSPVKFHVF 316
Query: 154 KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPH---DYLLAGCHDGTVALWKF 210
E D F F S++ C W SP H +L GC +G +ALW
Sbjct: 317 VEQADFTFG-----FNDSLISC---------CTW-VSPEHGDIHQILVGCSNGYLALWDI 361
Query: 211 VASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL-KFWDIRDPF-- 267
++S PL I V + D + LT + +DIRDP
Sbjct: 362 LSSQEC----PLFYIPYHDSYIHNV----VQCLDDFPWLFLTTAFDCYTRIFDIRDPIID 413
Query: 268 -RPL 270
RPL
Sbjct: 414 NRPL 417
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 519 PKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEI 553
P + +++V WN NKG WL G A GI+R +++
Sbjct: 542 PWQIQVNKVEWNGNKGYAGWLASGMACGILRVEDL 576
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=slr0143 PE=4 SV=1
Length = 1191
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
SP YLL+ +GT +W S++ + L +D LPI ++ +P DS +
Sbjct: 1047 SPNGKYLLSAGREGTAKIW-------SVEGQLLHTLKSDPLPIDQIAISP-----DSQWI 1094
Query: 250 ILTAGHGGLKFWDIRDPFR 268
A G ++ WD + R
Sbjct: 1095 ATAASDGMVRLWDQQGNLR 1113
>sp|Q5DFU0|CIAO1_SCHJA Probable cytosolic iron-sulfur protein assembly protein
OS=Schistosoma japonicum PE=2 SV=1
Length = 352
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
SP Y+ + DGTV +WK + S+ + L+ T ++ V+W P S ++
Sbjct: 69 SPCGTYIASASFDGTVTIWKISEAHSAPEMEALVSLEGHTSEVKCVAWCP------SGHL 122
Query: 250 ILTAGHG-GLKFWDIRD 265
I T G + W+ D
Sbjct: 123 IATCGRDKSVWLWEFDD 139
>sp|Q6PJI9|WDR59_HUMAN WD repeat-containing protein 59 OS=Homo sapiens GN=WDR59 PE=1 SV=2
Length = 974
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
++W+ P D L+ D + +W D +P + SA V W +
Sbjct: 111 LDWAVFEP-DLLVTSSVDTYIYIW-----DIKDTRKPTVALSA-VAGASQVKW-----NK 158
Query: 245 DSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD 288
+AN + T+ G ++ WD R P + + I+GLDW PD
Sbjct: 159 KNANCLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPD 202
>sp|Q292E8|CIAO1_DROPS Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3
SV=1
Length = 335
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 119/306 (38%), Gaps = 51/306 (16%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL------RTMKAI-- 148
H G++ W V W P V C + A+ + + S W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDK---AIRVWSLSGNTWSTKTILSDGHKRTIREIRW 67
Query: 149 -----YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-H 201
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 68 SPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSR 123
Query: 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261
D +V +W+ VA D + +L +A T ++ V W P + +++ +A +
Sbjct: 124 DKSVWIWE-VAGDDEFECAAVL--NAHTQDVKRVVWHPTK------DILASASYDNTIKM 174
Query: 262 DIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317
WD + ++ +D+ + ++ DD ++I AY P
Sbjct: 175 FAESQLDSDWDCTATLSSHTSTVWSIDFDAEGDRLVSCSDDKTLKIWR----AYH-PGND 229
Query: 318 KPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372
A +Q + C+ S AI+ V +LTG++A D + F+ T+ D
Sbjct: 230 AGIATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETS-----D 284
Query: 373 HSRNRP 378
R+ P
Sbjct: 285 SKRDEP 290
>sp|Q5BJ90|WDR12_XENTR Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12
PE=2 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 188 STSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDS 246
S SP L +G D + LW + D S+ +LC ++ T + +V W+P S
Sbjct: 304 SYSPLSQRLASGSTDRHIRLWDPRSKDGSL----VLCSLTSHTGWVTSVKWSP----SHE 355
Query: 247 ANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306
++ + +K WD R PL+D+ + +DW D G ++ D +
Sbjct: 356 QQLVSGSLDKLVKLWDTRSCKAPLYDLAAHSDKVLSVDW-TDAGLILSGGSDNKLYSYRY 414
Query: 307 LKAAYDVPA 315
+ DV A
Sbjct: 415 TASLSDVGA 423
>sp|B4GDM7|CIAO1_DROPE Probable cytosolic iron-sulfur protein assembly protein Ciao1
OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2
Length = 335
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 119/306 (38%), Gaps = 51/306 (16%)
Query: 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL------RTMKAI-- 148
H G++ W V W P V C + A+ + + S W + RT++ I
Sbjct: 12 GHKGRI-WGVAWHPKGNVFASCGEDK---AIRVWSLSGNTWSTKTILSDGHKRTIREIRW 67
Query: 149 -----YLSSMK-EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-H 201
YL+S + T + K F C+ G + ++ WS S LLA C
Sbjct: 68 SPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVK-SVSWSRSGG---LLATCSR 123
Query: 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261
D +V +W+ VA D + +L +A T ++ V W P + +++ +A +
Sbjct: 124 DKSVWIWE-VAGDDEFECAAVL--NAHTQDVKRVVWHPTK------DILASASYDNTIKM 174
Query: 262 DIRDPFRPLWD----IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317
WD + ++ +D+ + ++ DD ++I AY P
Sbjct: 175 FAESQLDSDWDCTATLSSHTSTVWSIDFDAEGDRLVSCSDDKTLKIWR----AYH-PGND 229
Query: 318 KPFAGTKQQGLHLVNCS-----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372
A +Q + C+ S AI+ V +LTG++A D + F+ T+ D
Sbjct: 230 AGIATPDKQSVWKCVCTLSGQHSRAIYDVSWCKLTGLIATGCGDDGIRIFKETS-----D 284
Query: 373 HSRNRP 378
R+ P
Sbjct: 285 SKRDEP 290
>sp|Q8C0M0|WDR59_MOUSE WD repeat-containing protein 59 OS=Mus musculus GN=Wdr59 PE=1 SV=2
Length = 992
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
++W+ P D L+ D + +W D +P + SA V W +
Sbjct: 111 LDWAVFEP-DLLVTSSVDTYIYIW-----DIKDTRKPTVALSA-VAGASQVKW-----NK 158
Query: 245 DSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD 288
+AN + T+ G ++ WD R P + + I+GLDW PD
Sbjct: 159 KNANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPD 202
>sp|B5DG67|WDR12_SALSA Ribosome biogenesis protein wdr12 OS=Salmo salar GN=wdr12 PE=2 SV=1
Length = 423
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 188 STSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247
S SP L +G D V LW + D S+ LL ++ + + AV WAP S
Sbjct: 304 SYSPLCRRLASGSTDRHVRLWDPRSKDGSL---VLLSLTSHSGWVTAVKWAP----SHEH 356
Query: 248 NVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDW 285
++ + +K WD R PL+D+ + +DW
Sbjct: 357 QLVSGSLDNLVKLWDTRSCKAPLYDVSAHEDKVLCVDW 394
>sp|Q6BUA6|LIS1_DEBHA Nuclear distribution protein PAC1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PAC1 PE=3 SV=2
Length = 529
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230
S +K TQS L S P +L GC DG++ +W V +S I P A
Sbjct: 112 SSIKAFKTQSHQLVQSVSIHPALPIILGGCSDGSLIIWNLVNDESLI---PEKIIKAHIR 168
Query: 231 PIRAVSWAPAESD 243
+ ++W+ D
Sbjct: 169 GVNTIAWSKKPVD 181
>sp|Q9Y4E6|WDR7_HUMAN WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2
Length = 1490
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255
++ GCHDG + LW + + I+ R LL T I +S A A SD ++ +
Sbjct: 34 IVTGCHDGQICLWDL-SVELQINPRALLF--GHTASITCLSKACASSDKQ--YIVSASES 88
Query: 256 GGLKFWDIRD 265
G + WD+ D
Sbjct: 89 GEMCLWDVSD 98
>sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus
GN=Grwd1 PE=2 SV=1
Length = 445
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD 243
+ WS P +LL+G DGT+ +W S P+ F P+ +V W P
Sbjct: 312 VISWSRREP--FLLSGGDDGTLKVWDLRQFKS---GSPVATFKQHVAPVTSVEWHP---- 362
Query: 244 SDSANVILTAGHGGLKFWDI---RDP 266
DS + + WD+ RDP
Sbjct: 363 QDSGVFAASGADNQITQWDLAVERDP 388
>sp|Q9VKQ3|WDR12_DROME Ribosome biogenesis protein WDR12 homolog OS=Drosophila
melanogaster GN=CG6724 PE=2 SV=1
Length = 420
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
++L+GC+D T+ LW + + +L S T PI+AV W + ++
Sbjct: 118 WILSGCYDNTLNLW-------TNKGKHILTISGHTAPIKAVDWISLDEET 160
>sp|B3N534|WDR12_DROER Ribosome biogenesis protein WDR12 homolog OS=Drosophila erecta
GN=GG10358 PE=3 SV=1
Length = 420
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
++L+GC+D T+ LW + + +L S T PI+AV W + ++
Sbjct: 118 WILSGCYDNTLNLW-------TNKGKHILTISGHTAPIKAVDWISLDEET 160
>sp|P40055|UTP7_YEAST U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP7 PE=1
SV=1
Length = 554
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 27/145 (18%)
Query: 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD 243
TM + +P + + G +GTV+LW S PL+ + P+ +++ D
Sbjct: 235 TMAMAQNPWNAVMHLGHSNGTVSLW------SPSMPEPLVKLLSARGPVNSIAI-----D 283
Query: 244 SDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI 303
+ T +K WDIR+ F+ L + ++ LP PG + D G + +
Sbjct: 284 RSGYYMATTGADRSMKIWDIRN-FKQL----------HSVESLPTPGTNVSISDTGLLAL 332
Query: 304 -----VSLLKAAYDVPATGKPFAGT 323
V+L K A + KP G+
Sbjct: 333 SRGPHVTLWKDALKLSGDSKPCFGS 357
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,995,868
Number of Sequences: 539616
Number of extensions: 10017356
Number of successful extensions: 27148
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 26996
Number of HSP's gapped (non-prelim): 248
length of query: 568
length of database: 191,569,459
effective HSP length: 123
effective length of query: 445
effective length of database: 125,196,691
effective search space: 55712527495
effective search space used: 55712527495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)